Citrus Sinensis ID: 009452

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
Protein Sequence
MEPPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEIKLYAV
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHccccccHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccEEEEEEEccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccccHHHHHHHHHHccccccccHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHEcccccccccccccccccccccEEEccccHHEEEEEHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccEEEEc
Coil and Loop (DISEMBL)
MEPPSEQQQSWKKMKKQLtakrddtplqslvrTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSlagikarngydAFHIAAKQGCLEVLKILMEALPELLmtfdssnttalhtaSSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLskepgivlrndkkgqTALHMAVKGQSIELVDELVKVEPVIINMVdakgnsalHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKehgvpcgksikpqaNSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAifsvpgqfadkpdelppkvspgeahiapktpfLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRrssmdsgsrsmsasvmldseflnneiklyav
Flexible Loop (DISEMBL)
MEPPSEQQQSWKKMKKQltakrddtplqslvrtgsveLVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRkgrvqkllningvdkavinksretaldtaektghsEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHdqlehtretrkhvHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEAskirsirrssmdsgsrsmsasvmldseflnneiklyav
Low Complexity Region (SEG)
MEPPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSttvvavliatvafaaifSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAvvivqtsvvvIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEaskirsirrssmdsgsrsmsasVMLDSEFLNNEIKLYAV
Disordered region (IsUnstruct)
******************************VRTGSVELVLDMISSYGDMELR*********GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINK***************EIGVILKEHGVPC**************************************VHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQF*****************IAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEAS*************************************
Disordered Region (DISOPRED)
**PPSEQ***********TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHD************************EGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEA***************************FLNNEIKLYAV
Disordered Region (DISEMBL)
*********************RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ*********AVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIR***************ASVMLDSEFLNNEIKLYAV
Disordered Region (DISPRO)
*EPPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHV**IAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIR***********************FLNNEIKLYAV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEIKLYAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	534	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.953	0.971	0.617	1e-178
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.947	0.857	0.444	1e-108
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.883	0.887	0.428	1e-102
Q6ZVH7	1005	Espin-like protein OS=Hom	yes	no	0.470	0.249	0.284	1e-18
Q9ET47	871	Espin OS=Mus musculus GN=	yes	no	0.481	0.295	0.284	2e-18
Q3UYR4	1005	Espin-like protein OS=Mus	no	no	0.498	0.264	0.277	6e-18
Q63618	837	Espin OS=Rattus norvegicu	yes	no	0.479	0.305	0.277	1e-17
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.462	0.131	0.288	2e-17
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.462	0.132	0.288	2e-17
Q9EQG6	1762	Kinase D-interacting subs	no	no	0.440	0.133	0.309	2e-17

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  626 bits (1614), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 329/533 (61%), Positives = 407/533 (76%), Gaps = 24/533 (4%)

Query: 12  KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
           K M KQ+TA+RDDTPL + VR G  +L+L+MI  +  +EL+E+L++ NQSGETALYVAAE
Sbjct: 6   KTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAE 65

Query: 72  YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
           YGY DMV+ ++++ D+ LAG KA+NG+DAFHIAAK G L+VL +L+EA PEL  TFDSS 
Sbjct: 66  YGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSK 125

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
           TTALHTA+SQGH E+V FLL+KG  LA IARSNGKTALHSAARNGH  IVK L+ K+ G+
Sbjct: 126 TTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGM 185

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQK 248
           V R DKKGQTALHMAVKGQ+ E+VD L++ +  +IN  D KGN+ LHIA RK R   VQ 
Sbjct: 186 VTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQT 245

Query: 249 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ-----ANSARE 303
           +L    V +  +NKS ETALD AEKTG  EI  +L++ G+   +SIKP      + S+R+
Sbjct: 246 VLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRK 305

Query: 304 LKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAF 363
           LK+ VS+I HEVH QLE T  TR+ + GIAKR+NKMHTEGLNNAINSTT+VA+LIATVAF
Sbjct: 306 LKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAF 365

Query: 364 AAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVV 423
           AAIF+VPGQ+ D P ++PP  S GEA  AP+  FLIF++FDS ALFISLAVV+VQTSVVV
Sbjct: 366 AAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVV 425

Query: 424 IERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIG 483
           IER+AKKQMMA+INKLMW+ACIMISVAF++LS++VVG+  +  AV VT IG +IMVST+G
Sbjct: 426 IERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLG 485

Query: 484 TMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNE--IKLYAV 534
           TM YWVI NRIE              GS+S  AS+M D E  +++   KLYAV
Sbjct: 486 TMCYWVIANRIE--------------GSKSSPASMMSDPELADSKHNRKLYAV 524

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 241/542 (44%), Positives = 334/542 (61%), Gaps = 36/542 (6%)

Query: 8   QQSWKKMKKQLTAKRDDTPLQSLVRTG---SVELVLDMISSY---------GDMELREM- 54
           Q   KK  KQ+T + +DT L    + G   +V+ +L  I+S           D E+ E+ 
Sbjct: 59  QAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIR 118

Query: 55  ---LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLE 111
              ++++N+ GETAL+ AA+ G++D+V+E+++Y        K R+GYD  HIAA QG   
Sbjct: 119 ASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHA 178

Query: 112 VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           ++++L++    L  TF  SN T L +A+ +GH EVV  LL K   L  I+RSN K ALH 
Sbjct: 179 IVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHL 238

Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AAR GH+E++KALLSK+P +  R DKKGQTALHMAVKGQS E+V  L+  +P I+   D 
Sbjct: 239 AARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDK 298

Query: 232 KGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 288
             N+ALH+ATRK R   V+ LL++   +   + +  +TALD AE    SE    +KE   
Sbjct: 299 SCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLA 358

Query: 289 PCGKSIKPQANSAR-ELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNA 347
             G     + N  R EL+  V+ IK++VH QLE T+ T K+VH I+K + K+H EG+NNA
Sbjct: 359 RSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNA 418

Query: 348 INSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIA 407
            NS TVVAVL ATVAFAAIF+VPG   D  D        G A +  +  F IF IF+++A
Sbjct: 419 TNSVTVVAVLFATVAFAAIFTVPG--GDNND--------GSAVVVGRASFKIFFIFNALA 468

Query: 408 LFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWA 467
           LF SLAVV+VQ ++V  E KA+K+++ VINKLMWLA +  SVAFLA SYIVVG      A
Sbjct: 469 LFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAA 528

Query: 468 VAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNN 527
             VT +G VIM   +GTM+Y+V    +++ + RS+R+  + S  RS S S    S+F N+
Sbjct: 529 ELVTVVGGVIMAGVLGTMTYYV----VKSKRTRSMRK-KVKSARRSGSNS-WHHSDFSNS 582

Query: 528 EI 529
           E+
Sbjct: 583 EV 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/492 (42%), Positives = 311/492 (63%), Gaps = 20/492 (4%)

Query: 23  DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
           D + LQ LV   + + ++D  S      + E++S  N +GETA+Y++A     D+ R +I
Sbjct: 22  DLSQLQQLVDNLTGDELIDESSPCS--AVAELMSVQNDAGETAVYISAAENLEDIFRYLI 79

Query: 83  RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
           R+       I++++  +AFH+AAK+G L ++K L+   PEL    D+SNT+ L+ A+ Q 
Sbjct: 80  RFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQD 139

Query: 143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
           H+E+V  +L+   + A I R NGKT+LH+A R G L IVKAL+ K+  IV   DKKGQTA
Sbjct: 140 HLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTA 199

Query: 203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ---KLLNINGVDKAV 259
           LHMAVKG+S+E+V+E+++ +  I+N  D KGN+ALHIATRK R Q    LL    ++   
Sbjct: 200 LHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNA 259

Query: 260 INKSRETALDTAEKTGHS----EIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEV 315
           IN  +ETA+D A+K  +S    EI   L E G   G+ I  + + AR LK+AVSDIKHEV
Sbjct: 260 INNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGRE-DEARALKRAVSDIKHEV 318

Query: 316 HDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFAD 375
             QL    +T + V GIAK + K+H E + N  NS TVVAVL A++AF AIF++PGQ+  
Sbjct: 319 QSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFT 378

Query: 376 KPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAV 435
           +   +      G+A+IA +T F +F + ++ +LFISLAVV+VQ ++V  + +A+K++++V
Sbjct: 379 EGSHV------GQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSV 432

Query: 436 INKLMWLACIMISVAFLALSYIVVGDDGRGW-AVAVTFIGTVIMVSTIGTMSYWVIVNRI 494
           +NKLMW AC     AFLA+++ VVG  G  W A+ +T +G  I+V T+ +M Y+V   R 
Sbjct: 433 VNKLMWAACACTFGAFLAIAFAVVG-KGNSWMAITITLLGAPILVGTLASMCYFVFRQRF 491

Query: 495 EASK--IRSIRR 504
            +     R IRR
Sbjct: 492 RSGNDSQRRIRR 503

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZVH7|ESPNL_HUMAN Espin-like protein OS=Homo sapiens GN=ESPNL PE=2 SV=3

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 13/264 (4%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TP      TGS+  +  ++   G       L   + SG + L++AA +G+  +V  ++  
Sbjct: 72  TPAHDAAATGSLAELCWLVREGGCG-----LQDQDASGVSPLHLAARFGHPVLVEWLL-- 124

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV 144
           H+   A ++ R G    H AA  G L  LK+L  A    +     S  + L+ A  +GH+
Sbjct: 125 HEGHSATLETREGARPLHHAAVSGDLTCLKLLTAAHGSSVNRRTRSGASPLYLACQEGHL 184

Query: 145 EVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS-KEPGIVLRNDKKGQTAL 203
            + +FL++       +   +G +ALH+AA  GH  +V  L++  + G+  R D +G TAL
Sbjct: 185 HLAQFLVKDCGADVHLRALDGMSALHAAAARGHYSLVVWLVTFTDIGLTAR-DNEGATAL 243

Query: 204 HMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVIN 261
           H A +G    ++D L+ +   I+   D+ G + LH A   G+++  + L  + VD ++ +
Sbjct: 244 HFAARGGHTPILDRLLLMGTPILR--DSWGGTPLHDAAENGQMECCQTLVSHHVDPSLRD 301

Query: 262 KSRETALDTAEKTGHSEIGVILKE 285
           +   TA D AE  GH +    L+E
Sbjct: 302 EDGYTAADLAEYHGHRDCAQYLRE 325

Homo sapiens (taxid: 9606)

>sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 127/267 (47%), Gaps = 10/267 (3%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A+   TP      TG +   L  + + G   ++E     + SG T L++AA +G+ D+V+
Sbjct: 67  ARNGATPAHDAAATGYLS-CLQWLLTQGGCRVQEK----DNSGATVLHLAARFGHPDVVK 121

Query: 80  EMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139
            ++ Y   + + I    G    H AA +G L  LK+L+   PE +    ++  T L+ A 
Sbjct: 122 WLL-YQGGANSAITTDTGALPIHYAAAKGDLPSLKLLVGHYPEGVNAQTNNGATPLYLAC 180

Query: 140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG 199
            +GH+EV K+L+++ S    +   +G T LH+AA+ GH  ++  L+S         D  G
Sbjct: 181 QEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNPVLVWLVSFADVSFSEQDHDG 240

Query: 200 QTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDK 257
            TA+H A      +++  L+     I    D  G + LH A   G ++  ++L +NG   
Sbjct: 241 ATAMHFAASRGHTKVLSWLLLHGAEISQ--DLWGGTPLHDAAENGELECCQILAVNGAGL 298

Query: 258 AVINKSRETALDTAEKTGHSEIGVILK 284
            V +    TA D AE  GH+     L+
Sbjct: 299 DVRDHDGYTAADLAEFNGHTHCSRYLR 325

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Mus musculus (taxid: 10090)

>sp|Q3UYR4|ESPNL_MOUSE Espin-like protein OS=Mus musculus GN=Espnl PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 134/281 (47%), Gaps = 15/281 (5%)

Query: 13  KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY 72
           K+     A    TP+     TG++  +  ++   G       L   + SG + L++AA +
Sbjct: 60  KLPGNQQAHNGATPVHDAAATGNLAELCWLVRDAGCG-----LQDQDASGVSPLHLAARF 114

Query: 73  GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT 132
           G+  +V  ++R  +   A ++   G    H AA  G L  LK+L  A    +     S  
Sbjct: 115 GHPALVEWLLR--EGHAATLETLEGALPLHHAAVSGDLTCLKLLTAAHSSGVNQRTCSGA 172

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS-KEPGI 191
           + L+ A  +GH+ + +FL++       +   +G ++LH+AA +GH  +V  L++  + G+
Sbjct: 173 SPLYLACQEGHLHLAQFLVKDCGADVRLRALDGMSSLHAAAAHGHYSLVVWLVTFTDIGL 232

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQK 248
             R D +G TALH A +G    ++D L+ +   I  M D+ G + LH A   G     Q 
Sbjct: 233 TAR-DNEGATALHFAARGGHTPILDRLLLMGAPI--MRDSWGGTPLHDAAENGHMECCQT 289

Query: 249 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 289
           LL+ + VD  + ++   TA+D AE  GH +    L+E   P
Sbjct: 290 LLSHH-VDPFLRDEDGYTAIDLAEYHGHQDCAQFLREMSRP 329

Mus musculus (taxid: 10090)

>sp|Q63618|ESPN_RAT Espin OS=Rattus norvegicus GN=Espn PE=1 SV=2

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 11/267 (4%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A+   TP      TG +   L  + + G   ++E     + SG T L++AA +G+ D+V 
Sbjct: 67  ARNGATPAHDAAATGYLS-CLQWLLTQGGCRVQEK----DNSGATVLHLAARFGHPDVVN 121

Query: 80  EMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139
            ++ Y   + + I    G    H AA +G L  +K+L+   PE +    ++  T L+ A 
Sbjct: 122 WLL-YQGGANSAITTDTGALPIHYAAAKGDLPSMKLLVGHYPEGVNAQTNNGATPLYLAC 180

Query: 140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG 199
            +GH+EV K+L+++ S    +   +G T LH+AA+ GH  ++  L+S    +    D  G
Sbjct: 181 QEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNPVLVWLVSFA-DVSFEQDHDG 239

Query: 200 QTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDK 257
            TA+H A      +++  L+     I    D  G + LH A   G ++  ++L +NG   
Sbjct: 240 ATAMHFAASRGHTKVLSWLLLHGAEISQ--DLWGGTPLHDAAENGELECCQILAVNGAGL 297

Query: 258 AVINKSRETALDTAEKTGHSEIGVILK 284
            V +    TA D A+  GH+     L+
Sbjct: 298 DVRDHDGYTAADLADFNGHTHCSRYLR 324

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Rattus norvegicus (taxid: 10116)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 41/288 (14%)

Query: 32  RTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG 91
           R+G+++  LD + +  D      ++  NQ+G   L++A++ G+V MV E++  H   +  
Sbjct: 21  RSGNLDKALDHLRNGVD------INTCNQNGLNGLHLASKEGHVKMVVELL--HKEIILE 72

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
              + G  A HIAA  G  EV++ L+     +         T L+ A+ + H+EVVKFLL
Sbjct: 73  TTTKKGNTALHIAALAGQDEVVRELVNYGANV-NAQSQKGFTPLYMAAQENHLEVVKFLL 131

Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALL---------------------SKEPG 190
           E G+    +A  +G T L  A + GH  +V  L+                     ++   
Sbjct: 132 ENGAN-QNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAA 190

Query: 191 IVLRND-------KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243
           ++L+ND       K G T LH+A   +++  V +L+      +N     G + LHIA+R+
Sbjct: 191 VLLQNDPNPDVLSKTGFTPLHIAAHYENLN-VAQLLLNRGASVNFTPQNGITPLHIASRR 249

Query: 244 GRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 289
           G V   +LL   G       K   T L  A + GH  I  IL +HG P
Sbjct: 250 GNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAP 297

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 41/288 (14%)

Query: 32  RTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG 91
           R+G+++  LD + +  D      ++  NQ+G   L++A++ G+V MV E++  H   +  
Sbjct: 17  RSGNLDKALDHLRNGVD------INTCNQNGLNGLHLASKEGHVKMVVELL--HKEIILE 68

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
              + G  A HIAA  G  EV++ L+     +         T L+ A+ + H+EVVKFLL
Sbjct: 69  TTTKKGNTALHIAALAGQDEVVRELVNYGANV-NAQSQKGFTPLYMAAQENHLEVVKFLL 127

Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALL---------------------SKEPG 190
           E G+    +A  +G T L  A + GH  +V  L+                     ++   
Sbjct: 128 ENGAN-QNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAA 186

Query: 191 IVLRND-------KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243
           ++L+ND       K G T LH+A   +++  V +L+      +N     G + LHIA+R+
Sbjct: 187 VLLQNDPNPDVLSKTGFTPLHIAAHYENLN-VAQLLLNRGASVNFTPQNGITPLHIASRR 245

Query: 244 GRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 289
           G V   +LL   G       K   T L  A + GH  I  IL +HG P
Sbjct: 246 GNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGAP 293

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q9EQG6|KDIS_RAT Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 141/265 (53%), Gaps = 30/265 (11%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL      G+VE+V +++ +  +  L ++         TAL  A++ G++ +V E+++ 
Sbjct: 40  TPLMLAAEQGNVEIVKELLKNGANCNLEDL------DNWTALISASKEGHIHIVEELLK- 92

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
              S A ++ R+  G+ A   A  +G  +V+++L+   A P +   +   +   +  A+ 
Sbjct: 93  ---SGASLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSVTGLY---SVYPIIWAAG 146

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG- 199
           +GH ++V  LL+ G+ +   +   G T L  AAR GHLE VK LL+    +    D++G 
Sbjct: 147 RGHADIVHLLLQNGAKV-NCSDKYGTTPLVWAARKGHLECVKHLLAMGADV----DQEGA 201

Query: 200 --QTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQKLLNING 254
              TAL +AVKG   + V E++K  P  +N+ D  GN+AL IA+++G    VQ LL+  G
Sbjct: 202 NSMTALIVAVKGGYTQSVKEILKRNPN-VNLTDKDGNTALMIASKEGHIEIVQDLLDA-G 259

Query: 255 VDKAVINKSRETALDTAEKTGHSEI 279
               + ++S +T L  A + GH EI
Sbjct: 260 TYVNIPDRSGDTVLIGAVRGGHVEI 284

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
225439832	541	PREDICTED: ankyrin repeat-containing pro	1.0	0.987	0.720	0.0
147866067	539	hypothetical protein VITISV_005610 [Viti	0.996	0.987	0.713	0.0
356541266	549	PREDICTED: ankyrin repeat-containing pro	0.994	0.967	0.692	0.0
356542601	548	PREDICTED: ankyrin repeat-containing pro	1.0	0.974	0.686	0.0
359478657	542	PREDICTED: ankyrin repeat-containing pro	0.996	0.981	0.701	0.0
449460983	547	PREDICTED: ankyrin repeat-containing pro	0.996	0.972	0.672	0.0
356547216	560	PREDICTED: ankyrin repeat-containing pro	0.992	0.946	0.682	0.0
255568070	537	ankyrin repeat-containing protein, putat	0.992	0.986	0.680	0.0
356557461	603	PREDICTED: ankyrin repeat-containing pro	0.998	0.883	0.681	0.0
224088591	491	predicted protein [Populus trichocarpa]	0.908	0.987	0.718	0.0

>gi|225439832|ref|XP_002277467.1| PREDICTED: ankyrin repeat-containing protein At5g02620 [Vitis vinifera] gi|297741527|emb|CBI32659.3| unnamed protein product [Vitis vinifera]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/541 (72%), Positives = 450/541 (83%), Gaps = 7/541 (1%)

Query: 1   MEPPSEQQQSWKK-MKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDME-LREMLSKM 58
           ME P+ QQ   +K + KQLT KRDDT L S  R G++EL LD++S   D E L+E+LSK 
Sbjct: 1   MEAPARQQSFRRKNITKQLTGKRDDTSLHSAARAGNLELALDILSKCEDAEALKELLSKQ 60

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           NQSGETALYVAAEYG+ D+V+EM+ Y+D S AGI+ARNGYDAFHIAAKQG LEVLK+LME
Sbjct: 61  NQSGETALYVAAEYGHCDLVKEMMEYYDVSSAGIQARNGYDAFHIAAKQGDLEVLKVLME 120

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
           A+PE  MT D SNTTALHTA++QGH+ VV FLLEKGS+LA IA+SNGKTALHSAAR GHL
Sbjct: 121 AIPETSMTVDLSNTTALHTAAAQGHISVVSFLLEKGSSLANIAKSNGKTALHSAARKGHL 180

Query: 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH 238
           ++VKALLSKEPGI  R DKKGQTALHMAVKGQ+IE+VDEL+K +P +INMVDAK N+ LH
Sbjct: 181 KVVKALLSKEPGISTRTDKKGQTALHMAVKGQNIEVVDELMKSDPSLINMVDAKDNTTLH 240

Query: 239 IATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI- 294
           +A RK R   VQ+LL+    D   INKS ETALDTAEKTGH+EI  IL+EHGV   KSI 
Sbjct: 241 VAVRKCRAQIVQQLLSHKATDTEAINKSGETALDTAEKTGHAEITTILQEHGVKSAKSIM 300

Query: 295 KPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVV 354
            P  N ARELKQ VSDIKHEVH QLEHTR+TRK V GIAKRINKMH+EGLNNAINSTTVV
Sbjct: 301 PPTKNKARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHSEGLNNAINSTTVV 360

Query: 355 AVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAV 414
           AVLIATVAFAAIF+VPGQ+AD P+ +PP +SPGEA+IAP+TPF++F IFDS+ALFISLAV
Sbjct: 361 AVLIATVAFAAIFNVPGQYADDPEHVPPGLSPGEANIAPRTPFMLFFIFDSLALFISLAV 420

Query: 415 VIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIG 474
           V+VQTS+VVIERKAKK+MMA+INKLMWLAC+++SVAFL+LSYIVVG   R  AV VT IG
Sbjct: 421 VVVQTSIVVIERKAKKKMMAIINKLMWLACVLVSVAFLSLSYIVVGTKERWLAVGVTGIG 480

Query: 475 TVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI-KLYA 533
           TVIM +T+GTM YWVIV+RIEA K RSIRRS+M S SRS   SVM DSE LNNE  KLYA
Sbjct: 481 TVIMATTLGTMCYWVIVHRIEAKKSRSIRRSTMSSRSRSSPMSVMSDSEILNNEYKKLYA 540

Query: 534 V 534
           +
Sbjct: 541 I 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866067|emb|CAN80966.1| hypothetical protein VITISV_005610 [Vitis vinifera]

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/541 (71%), Positives = 448/541 (82%), Gaps = 9/541 (1%)

Query: 1   MEPPSEQQQSWKK-MKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDME-LREMLSKM 58
           ME P+ QQ   +K + KQLT KRDDT L S  R G++EL LD++S   D E L+E+LSK 
Sbjct: 1   MEAPARQQSFRRKNITKQLTGKRDDTSLHSAARAGNLELALDILSKCEDAEALKELLSKQ 60

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           NQSGETALYVAAEYG+ D+V+EM+ Y+D S AGI+ARNGYDAFHIAAKQG  +++K+LME
Sbjct: 61  NQSGETALYVAAEYGHCDLVKEMMEYYDVSSAGIQARNGYDAFHIAAKQG--DLVKVLME 118

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
           A+PE  MT D SNTTALHTA++QGH+ VV FLLEKGS+LA IA+SNGKTALHSAAR GHL
Sbjct: 119 AIPETSMTVDLSNTTALHTAAAQGHISVVSFLLEKGSSLANIAKSNGKTALHSAARKGHL 178

Query: 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH 238
            +VKALLSKEPGI  R DKKGQTALHMAVKGQ+IE+VDEL+K +P +INMVDAK N+ LH
Sbjct: 179 XVVKALLSKEPGISTRTDKKGQTALHMAVKGQNIEVVDELMKSDPSLINMVDAKDNTTLH 238

Query: 239 IATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI- 294
           +A RK R   VQ+LL+    D   INKS ETALDTAEKTGH+EI  IL+EHGV   KSI 
Sbjct: 239 VAVRKCRAQIVQQLLSHKATDTEAINKSGETALDTAEKTGHAEITTILQEHGVKSAKSIM 298

Query: 295 KPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVV 354
            P  N ARELKQ VSDIKHEVH QLEHTR+TRK V GIAKRINKMH+EGLNNAINSTTVV
Sbjct: 299 PPTKNKARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHSEGLNNAINSTTVV 358

Query: 355 AVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAV 414
           AVLIATVAFAAIF+VPGQ+AD P+ +PP +SPGEA+IAP+TPF++F IFDS+ALFISLAV
Sbjct: 359 AVLIATVAFAAIFNVPGQYADDPEHVPPGLSPGEANIAPRTPFMLFFIFDSLALFISLAV 418

Query: 415 VIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIG 474
           V+VQTS+VVIERKAKK+MMA+INKLMWLAC+++SVAFL+LSYIVVG   R  AV VT IG
Sbjct: 419 VVVQTSIVVIERKAKKKMMAIINKLMWLACVLVSVAFLSLSYIVVGTKERWLAVGVTGIG 478

Query: 475 TVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI-KLYA 533
           TVIM +T+GTM YWVIV+RIEA K RSIRRS+M S SRS   SVM DSE LNNE  KLYA
Sbjct: 479 TVIMATTLGTMCYWVIVHRIEAKKSRSIRRSTMSSRSRSSPMSVMSDSEILNNEYKKLYA 538

Query: 534 V 534
           +
Sbjct: 539 I 539

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541266|ref|XP_003539100.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/552 (69%), Positives = 443/552 (80%), Gaps = 21/552 (3%)

Query: 1   MEPPSEQQQSW---------KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMEL 51
           M+ P+ Q Q+          KKM KQLT KRDDTPL S  R G++ ++ D +S   + EL
Sbjct: 1   MDTPNAQPQAASASTPRTPRKKMTKQLTGKRDDTPLHSAARAGNMSVLKDTVSGSEEGEL 60

Query: 52  REMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLE 111
           R +L+K N SGET L+VAAEYGYV+MVRE+I+Y+D + AGIKA NG+DA HIAAKQG L+
Sbjct: 61  RVLLTKQNHSGETILFVAAEYGYVEMVRELIQYYDPAGAGIKASNGFDALHIAAKQGDLD 120

Query: 112 VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           ++KILMEA PEL MT D SNTTA+HTA+ QGH E+VK LLE GS LATIARSNGKTALHS
Sbjct: 121 IVKILMEAHPELSMTVDPSNTTAVHTAALQGHTEIVKLLLEAGSNLATIARSNGKTALHS 180

Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AARNGHLE+VKALL KEP +  R DKKGQTALHMAVKGQS+E+V+EL+K +P  INMVD 
Sbjct: 181 AARNGHLEVVKALLGKEPVVATRTDKKGQTALHMAVKGQSLEVVEELIKADPSTINMVDN 240

Query: 232 KGNSALHIATRKGRVQ--KLL----NINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 285
           KGN+ALHIATRKGR Q  KLL      NG+   V+NKS ETALDTAEKTG+SEI  IL E
Sbjct: 241 KGNTALHIATRKGRAQIIKLLLGQTETNGL---VVNKSGETALDTAEKTGNSEIKDILLE 297

Query: 286 HGVPCGKSIK--PQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEG 343
           HGV   K+IK  P   +ARELKQ VSDIKHEVH QLEHTR+TR+ V GIAKRINKMH EG
Sbjct: 298 HGVRSAKAIKAQPGTATARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHAEG 357

Query: 344 LNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIF 403
           LNNAINSTTVVAVLIATVAFAAIF+VPGQFAD P  LP  ++ GEA+IAP+  FLIF +F
Sbjct: 358 LNNAINSTTVVAVLIATVAFAAIFTVPGQFADDPKVLPAGMTIGEANIAPQAAFLIFFVF 417

Query: 404 DSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDG 463
           DSIALFISLAVV+VQTSVV+IE KAKKQMMA+INKLMWLAC++ISVAFLALS++VVG D 
Sbjct: 418 DSIALFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQ 477

Query: 464 RGWAVAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSE 523
           +  A+ VT IGT IM +T+GTMSYWVI +RIEAS +RSIR+SSM+S SRS S SVM DSE
Sbjct: 478 KWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRKSSMESRSRSFSVSVMSDSE 537

Query: 524 FLNNEIK-LYAV 534
            LNNE K LYA+
Sbjct: 538 LLNNERKILYAI 549

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542601|ref|XP_003539755.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/548 (68%), Positives = 443/548 (80%), Gaps = 14/548 (2%)

Query: 1   MEPPSEQQQS------WKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREM 54
           M+ P+ Q Q+       KKM KQLT KRDDTPL S  R G++ ++ D +    + ELR +
Sbjct: 1   MDTPNAQPQAASASTPRKKMTKQLTGKRDDTPLHSAARAGNMTVLKDTVGGTEEGELRVL 60

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLK 114
           L+K N +GET LYVAAEYGYVDMVRE+I+Y+D + AGIKARNG+DA HIAAKQG L+++K
Sbjct: 61  LTKQNHAGETVLYVAAEYGYVDMVRELIQYYDLAGAGIKARNGFDALHIAAKQGDLDIVK 120

Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           ILMEA PEL MT D SNTTA+HTA+ QGH E+VK LLE GS LATI+RSNGKTALHSAAR
Sbjct: 121 ILMEAHPELSMTVDPSNTTAVHTAALQGHTEIVKLLLEAGSNLATISRSNGKTALHSAAR 180

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
           NGHLE+VKALL KEP +  R DKKGQTA+HMAVKGQS+E+V+EL+K +P  INMVD KGN
Sbjct: 181 NGHLEVVKALLGKEPSVATRTDKKGQTAIHMAVKGQSLEVVEELIKADPSTINMVDNKGN 240

Query: 235 SALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG 291
           +ALHIATRKGR   V+ LL     D  V+N+S ETALDTAEKTG+SE+  IL EHGV   
Sbjct: 241 TALHIATRKGRARIVKLLLGQTETDALVVNRSGETALDTAEKTGNSEVKDILLEHGVRRA 300

Query: 292 KSIK--PQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAIN 349
           K+IK  P   +ARELKQ VSDIKHEVH QLEHTR+TR+ V GIAKRINKMHTEGLNNAIN
Sbjct: 301 KAIKAQPGTATARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHTEGLNNAIN 360

Query: 350 STTVVAVLIATVAFAAIFSVPGQFADKPDELPP--KVSPGEAHIAPKTPFLIFIIFDSIA 407
           STTVVAVLIATVAFAAIF+VPGQFAD+P ++P    ++ GEA+IAP+  FLIF +FDSIA
Sbjct: 361 STTVVAVLIATVAFAAIFTVPGQFADEPKDIPAGSGMTIGEANIAPQAAFLIFFVFDSIA 420

Query: 408 LFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWA 467
           LFISLAVV+VQTSVV+IE KAKKQMMA+INKLMWLAC++ISVAFLALS++VVG D +  A
Sbjct: 421 LFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLA 480

Query: 468 VAVTFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNN 527
           + VT IGT IM +T+GTMSYWVI +RIEAS +RSIR+SSM S SRS S SVM DSE LNN
Sbjct: 481 IGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDSELLNN 540

Query: 528 EIK-LYAV 534
           + K LYA+
Sbjct: 541 DRKILYAI 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478657|ref|XP_002284522.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera] gi|297746150|emb|CBI16206.3| unnamed protein product [Vitis vinifera]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/539 (70%), Positives = 438/539 (81%), Gaps = 7/539 (1%)

Query: 3   PPSEQQQSW--KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQ 60
           P     QS   KKM KQLT KRDDTPL S  R G +E+V   +SS G+ EL E+LSK NQ
Sbjct: 4   PAGHHYQSLPRKKMTKQLTGKRDDTPLHSAARAGQLEVVARTLSSAGEEELLELLSKQNQ 63

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL 120
           SGETALYVAAEYGYVD+VREMI+YHD S A IKARNGYDAFHIAAKQG LEVLKILMEAL
Sbjct: 64  SGETALYVAAEYGYVDVVREMIQYHDLSTASIKARNGYDAFHIAAKQGDLEVLKILMEAL 123

Query: 121 PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI 180
           P L +T D SNTTALHTA++QG++EVV  LLE GS +A IA+SNGKTALHSAAR GHLE+
Sbjct: 124 PGLSLTEDVSNTTALHTAANQGYIEVVNLLLESGSGVAAIAKSNGKTALHSAARKGHLEV 183

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
           +KALL KEPG+  R DKKGQTALHMAVKGQ++E+V+EL+K +P ++NMVD KGN+ALHIA
Sbjct: 184 IKALLEKEPGVATRIDKKGQTALHMAVKGQNLEVVEELMKADPSLVNMVDTKGNTALHIA 243

Query: 241 TRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ 297
           +RKGR   V+KLL+ +  D   +NKS ETA DTAEKTG+  I  IL+EHGV   K++KPQ
Sbjct: 244 SRKGREQIVRKLLSHDETDTKAVNKSGETAFDTAEKTGNPNIATILQEHGVQSAKAMKPQ 303

Query: 298 ANS-ARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAV 356
             S ARELKQ VSDIKHEVH QLEHTR+TR+ V GIAKR+NKMH EGLNNAINSTTVVAV
Sbjct: 304 VTSTARELKQTVSDIKHEVHYQLEHTRQTRRRVQGIAKRLNKMHGEGLNNAINSTTVVAV 363

Query: 357 LIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVI 416
           LIATVAFAAIF+VPGQ+ D P  +P   S GEA+IAPK  F+IF IFDSIALFISLAVV+
Sbjct: 364 LIATVAFAAIFTVPGQYVDDPTNIPYGFSLGEANIAPKISFIIFFIFDSIALFISLAVVV 423

Query: 417 VQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTV 476
           VQTSVVVIE KAKKQMMA+INKLMWLAC++ISVAFLAL+++VVGD  +  A+ VT IGT 
Sbjct: 424 VQTSVVVIESKAKKQMMAIINKLMWLACVLISVAFLALAFVVVGDHEKWLAIGVTIIGTT 483

Query: 477 IMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI-KLYAV 534
           IM +T+GTM YWVI +RIEA K+RS+RR SM S SRS + SVM DSE LNNE  K+YA+
Sbjct: 484 IMATTLGTMCYWVIRHRIEAKKMRSVRRMSMPSKSRSWTMSVMSDSEILNNEFKKMYAI 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460983|ref|XP_004148223.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] gi|449484926|ref|XP_004157019.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/540 (67%), Positives = 441/540 (81%), Gaps = 8/540 (1%)

Query: 3   PPSEQQQSW--KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQ 60
           PP+  + S   KKM KQLT KRDDTPL S  R G++   +++++   +M+LRE+L+K N 
Sbjct: 8   PPAAAETSLPRKKMTKQLTGKRDDTPLHSAARAGNLTAAMEILTDTDEMDLRELLAKQNH 67

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL 120
           SGETALYVAAEYGYVD+VRE+++Y+D + A IKARNG+DAFHIA KQG LE+L++LMEA 
Sbjct: 68  SGETALYVAAEYGYVDLVRELLKYYDLADAEIKARNGFDAFHIATKQGDLEILRVLMEAH 127

Query: 121 PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI 180
           PEL MT D SNTTALHTA++QGH+E+V FLLE GS LATIARSNGKTALHSAARNGHL +
Sbjct: 128 PELSMTVDISNTTALHTAATQGHIEIVDFLLEAGSGLATIARSNGKTALHSAARNGHLHV 187

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
           ++ALL+KEP +  R DKKGQTAL MA KGQ++E+V+EL+K +P  INMVD KGN+ LHIA
Sbjct: 188 IRALLAKEPIVATRTDKKGQTALQMASKGQNLEVVEELIKADPSSINMVDNKGNTVLHIA 247

Query: 241 TRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ 297
            RKGR   V+ LL  +  +   +N+S ETALDTAEKTG+ +I + LKEHGV   K+IKP+
Sbjct: 248 ARKGRAEIVRMLLRHSETNTKAVNRSGETALDTAEKTGNPDIALTLKEHGVQSAKAIKPE 307

Query: 298 A-NSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAV 356
             N ARELKQ VSDIKHEVH QLEHTR+TR+ V GIAKR+NKMH+EGLNNAINSTTVVAV
Sbjct: 308 VKNPARELKQTVSDIKHEVHYQLEHTRQTRRRVQGIAKRLNKMHSEGLNNAINSTTVVAV 367

Query: 357 LIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVI 416
           LIATVAFAAIF+VPGQ+ D P+++P   S GEA+IAPK PF+IF IFDSIALFISLAVV+
Sbjct: 368 LIATVAFAAIFTVPGQYVDDPEDVPEGFSLGEANIAPKAPFIIFFIFDSIALFISLAVVV 427

Query: 417 VQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTV 476
           VQTSVVVIE +AKKQMMA+INKLMWLAC++ISVAFLALS++VVG+  +  A+ VT IGT 
Sbjct: 428 VQTSVVVIESQAKKQMMAIINKLMWLACVLISVAFLALSFVVVGEREKWLAIGVTLIGTT 487

Query: 477 IMVSTIGTMSYWVIVNRIEASKIRSIRRSSM-DSGSRSMSASVMLDSEFLNNEI-KLYAV 534
           IM +T+GTM YWVI +RIEAS +RSIR+SSM  S S+S S SVM DSE LNNE  K+YA+
Sbjct: 488 IMATTLGTMCYWVIKHRIEASNLRSIRKSSMGGSRSKSCSLSVMSDSEILNNEFKKMYAI 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547216|ref|XP_003542012.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/541 (68%), Positives = 432/541 (79%), Gaps = 11/541 (2%)

Query: 4   PSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGE 63
           P E+    +K K     KRDDTPL S  R G + ++ D+I    + EL E+L+K NQ GE
Sbjct: 21  PEEEHAKPRKKKTNSQGKRDDTPLHSAARAGKLAVLKDIILGTDETELHELLAKQNQDGE 80

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
           T LY+AAEYGYVD+VREMI+Y+D   AGIKARNG+DA HIAAKQG L+VLKILME  PEL
Sbjct: 81  TPLYIAAEYGYVDVVREMIQYYDLVDAGIKARNGFDALHIAAKQGDLDVLKILMEGHPEL 140

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
            MT D SNTTALHTA+ QGH E+VKFLLE GS+LATIARSNGKTALHSAARNGHLE+VKA
Sbjct: 141 SMTVDPSNTTALHTAAIQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVVKA 200

Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243
           LL KEPG+  R DKKGQTALHMAVKGQ IE+V+EL+K +P +INM+D+KGN+ALHIATRK
Sbjct: 201 LLEKEPGVATRTDKKGQTALHMAVKGQKIEVVEELIKADPSLINMLDSKGNTALHIATRK 260

Query: 244 GRVQ--KLL--NINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKP--- 296
           GR Q  KLL      V  AV N+  ETA+DTAEKTG+ E+  IL EHGV   ++IKP   
Sbjct: 261 GRAQIVKLLLEQKENVTSAV-NRCGETAVDTAEKTGNHEVQAILLEHGVQSARTIKPPQG 319

Query: 297 -QANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVA 355
             A +ARELKQ VSDIKHEVH QLEHTR+TRK V GIAKRINKMH EGLNNAINSTTVVA
Sbjct: 320 TTATTARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVA 379

Query: 356 VLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVV 415
           VLIATVAFAAIF+VPGQF D P+ +PP +S GEA+IAP+ PF+IF +FDSIALFISLAVV
Sbjct: 380 VLIATVAFAAIFTVPGQFVDDPNNIPPGMSLGEANIAPQAPFIIFFVFDSIALFISLAVV 439

Query: 416 IVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGT 475
           +VQTSVVVIE KAKKQMMAVINKLMWLAC++ISVAFLALS++VVG + +  A+ VT IGT
Sbjct: 440 VVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGVTIIGT 499

Query: 476 VIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI--KLYA 533
            IM +T+GTM YWVI +RIEAS +R+IR+SS+ S S+S S S   DSE LN+E   K+YA
Sbjct: 500 TIMATTLGTMCYWVIRHRIEASNLRNIRKSSLQSKSKSFSVSAFSDSELLNSEYYKKMYA 559

Query: 534 V 534
           +
Sbjct: 560 I 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568070|ref|XP_002525011.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223535673|gb|EEF37338.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/541 (68%), Positives = 437/541 (80%), Gaps = 11/541 (2%)

Query: 1   MEPPSEQQQSWK-KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMN 59
           M+ P+ Q    + KM KQLT KRDD+P  +  R G++E VL+++S   + EL+E+LSK N
Sbjct: 1   MDGPARQTSFRRSKMTKQLTGKRDDSPFHAAARAGNLETVLEIVSETDEAELKELLSKQN 60

Query: 60  QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEA 119
           QSGETALYVAAEYG+V++V+EMI+Y+D  LAGIKARNGYDAFHIAAKQG L+ L +LMEA
Sbjct: 61  QSGETALYVAAEYGHVELVKEMIKYYDIGLAGIKARNGYDAFHIAAKQGDLKTLTVLMEA 120

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST-LATIARSNGKTALHSAARNGHL 178
            PEL MTFDSSNTTALH+A+SQGHVEVV FLLEKGS+ L TIA+SN KTALHSAARNGHL
Sbjct: 121 NPELAMTFDSSNTTALHSAASQGHVEVVNFLLEKGSSNLVTIAKSNSKTALHSAARNGHL 180

Query: 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH 238
           EI++ALL KEPGI  R D+KGQTALHMAVKGQ++ELVDEL+  E  +INMVD+KGN+ LH
Sbjct: 181 EILRALLIKEPGIATRIDRKGQTALHMAVKGQNVELVDELIMSETCLINMVDSKGNTPLH 240

Query: 239 IATRKGRVQ---KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK 295
           IA RKGR Q   KLL   G+DK  IN+S ETA DTAEKTG SE+  +L+EHGV   +S+K
Sbjct: 241 IAARKGRTQIVKKLLEHKGLDKIAINRSGETAFDTAEKTGQSEVASVLEEHGVQSARSMK 300

Query: 296 P-QANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVV 354
           P    +ARELKQ VSDIKHEVHDQ++ TR+TRK V GIAKR+NKMHTEGLNNAINSTTVV
Sbjct: 301 PGTTTTARELKQTVSDIKHEVHDQIQTTRQTRKRVQGIAKRLNKMHTEGLNNAINSTTVV 360

Query: 355 AVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAV 414
           AVLIATVAFAAI+ VPGQFAD P+ L    S GEA+ A K  F+IFIIFDSIALFISLAV
Sbjct: 361 AVLIATVAFAAIYQVPGQFADNPEHLALGQSAGEANAASKPEFMIFIIFDSIALFISLAV 420

Query: 415 VIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIG 474
           V+VQTS+VVIERKAKKQ+MAVINKLMWLAC++IS+AFLAL+Y+VVGD  +  A+ VT IG
Sbjct: 421 VVVQTSIVVIERKAKKQLMAVINKLMWLACVLISIAFLALAYVVVGDQEKWLALWVTGIG 480

Query: 475 TVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNE-IKLYA 533
           TVIM +TIGTM YWVI+ +IE+S++R    S     S S S SVM ++E L NE  KLYA
Sbjct: 481 TVIMAATIGTMCYWVIMQKIESSQLRRSSISR----SLSGSMSVMAETEILENEHKKLYA 536

Query: 534 V 534
           +
Sbjct: 537 I 537

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557461|ref|XP_003547034.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/546 (68%), Positives = 434/546 (79%), Gaps = 13/546 (2%)

Query: 1   MEPPSEQ--QQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKM 58
           M  P+ Q    + KKM KQLT KRDDTPL S  R G++ ++ D I    + EL E+L+K 
Sbjct: 59  MATPAMQAVNTTRKKMTKQLTGKRDDTPLHSAARAGNLAVLKDTILETDEAELHELLAKQ 118

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           NQ GET LY+AAEYGYVD+VREMI+Y+D + AGIKARNG+DA HIAAKQG L+VLKILME
Sbjct: 119 NQDGETPLYIAAEYGYVDVVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDVLKILME 178

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
             PEL MT D SNTTALHTA+ QGH E+VKFLLE GS+LATIARSNGKTALHSAARNGHL
Sbjct: 179 GHPELSMTVDPSNTTALHTAAIQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHL 238

Query: 179 EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH 238
            +VKALL KEPG+  R DKKGQTALHMAVKGQ+IE+V+EL+K +P  INMVD+KGN+ALH
Sbjct: 239 VVVKALLEKEPGVATRTDKKGQTALHMAVKGQNIEVVEELIKADPSSINMVDSKGNTALH 298

Query: 239 IATRKGRVQ--KLL--NINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI 294
           IATRKGR Q  KLL      V  AV N+  ETA+DTAEKTG+  +  IL EHGV   ++I
Sbjct: 299 IATRKGRAQIVKLLLEQKENVTSAV-NRCGETAVDTAEKTGNHAVQAILLEHGVESARTI 357

Query: 295 KP----QANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINS 350
           KP     A +ARELKQ VSDIKHEVH QLEHTR+TRK V GIAKRINKMH EGLNNAINS
Sbjct: 358 KPPQGTTATTARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINS 417

Query: 351 TTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFI 410
           TTVVAVLIATVAFAAIF+VPGQF D P+ +P  +S GEA+IAP+  F+IF +FDSIALFI
Sbjct: 418 TTVVAVLIATVAFAAIFTVPGQFVDDPNNIPAGMSLGEANIAPQATFIIFFVFDSIALFI 477

Query: 411 SLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAV 470
           SLAVV+VQTSVVVIE KAKKQMMAVINKLMWLAC++ISVAFLALS++VVG + +  A+ V
Sbjct: 478 SLAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGV 537

Query: 471 TFIGTVIMVSTIGTMSYWVIVNRIEASKIRSIRRSSMDSGSRSMSASVMLDSEFLNNEI- 529
           T IGT IM +T+GTM YWVI +RIE S +RSIR+SS+ S S+S S S   DSE LN+E  
Sbjct: 538 TIIGTTIMATTLGTMCYWVIRHRIETSNLRSIRKSSLQSKSKSFSVSAFSDSELLNSEYY 597

Query: 530 -KLYAV 534
            K+YA+
Sbjct: 598 KKMYAI 603

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088591|ref|XP_002308487.1| predicted protein [Populus trichocarpa] gi|222854463|gb|EEE92010.1| predicted protein [Populus trichocarpa]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/491 (71%), Positives = 415/491 (84%), Gaps = 6/491 (1%)

Query: 14  MKKQLTAKRDDTPLQSLVRTGSVELVLDMIS-SYGDM-ELREMLSKMNQSGETALYVAAE 71
           M KQLT KRDDTP  ++VR G+++LV +M++ + G+  EL  MLSK NQSGETALYVA+E
Sbjct: 1   MTKQLTGKRDDTPFHAVVRAGNLKLVKEMVAENLGEAAELTVMLSKQNQSGETALYVASE 60

Query: 72  YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
           Y +VD+V+E+I+Y+DT LA +KARNGYD FHIAAKQG LE++++LME  PEL +TFDSSN
Sbjct: 61  YSHVDIVKELIKYYDTGLASLKARNGYDTFHIAAKQGDLEIVEVLMEVDPELSLTFDSSN 120

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
           TTALH+A+SQGHVEVV FLLEK S LA IA+SNGKTALHSAARNGHLEI+KALLSKEPG+
Sbjct: 121 TTALHSAASQGHVEVVNFLLEKCSGLALIAKSNGKTALHSAARNGHLEILKALLSKEPGL 180

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQK 248
           V++ DKKGQTALHMAVKGQ++ELV+EL+  +P ++NMVD KGNSALHIA RKGR   V+K
Sbjct: 181 VIKIDKKGQTALHMAVKGQTVELVEELIMSDPSLMNMVDNKGNSALHIAVRKGRDQIVRK 240

Query: 249 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSA-RELKQA 307
           LL+  G+DK ++N+SRET  D AEK GH  I  IL+EHGV   KS+KP   +A RELKQ 
Sbjct: 241 LLDQQGIDKTIVNRSRETPFDIAEKNGHRGIASILEEHGVLSAKSMKPTTKTANRELKQT 300

Query: 308 VSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIF 367
           VSDIKH VH+QLE TR TRK V GIAKR+NKMHTEGLNNAINSTTVVAVLIATVAFAAIF
Sbjct: 301 VSDIKHGVHNQLETTRLTRKRVQGIAKRLNKMHTEGLNNAINSTTVVAVLIATVAFAAIF 360

Query: 368 SVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAVVIVQTSVVVIERK 427
            +PGQF D PD L P  S GEA IAPK  F+IFIIFDSIALFISLAVV+VQTS+VVIERK
Sbjct: 361 QLPGQFVDNPDNLAPGQSAGEAKIAPKPEFMIFIIFDSIALFISLAVVVVQTSIVVIERK 420

Query: 428 AKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSY 487
           AKKQ+M+VINKLMWLAC++ISVAFLALSY+VVGDD +  A++VT IGT+IMV+TIGTM Y
Sbjct: 421 AKKQLMSVINKLMWLACVLISVAFLALSYVVVGDDEKWLALSVTVIGTIIMVTTIGTMGY 480

Query: 488 WVIVNRIEASK 498
           WVIV RIE SK
Sbjct: 481 WVIVQRIETSK 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.979	0.963	0.587	2.1e-155
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.906	0.923	0.593	3.9e-147
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.979	0.790	0.486	1.5e-122
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.973	0.829	0.478	6e-119
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.891	0.806	0.415	6e-87
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.880	0.774	0.408	1.7e-84
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.863	0.866	0.396	2.4e-83
ZFIN|ZDB-GENE-070615-8	489	ankdd1a "ankyrin repeat and de	0.518	0.566	0.307	9.2e-24
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.837	0.747	0.231	3.8e-22
WB|WBGene00185078	240	F40G9.17 [Caenorhabditis elega	0.352	0.783	0.355	3.8e-21

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
 Identities = 310/528 (58%), Positives = 384/528 (72%)

Query:    12 KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
             KKM KQLT KRDDT L S VR G+ + V+++++   + EL ++L K NQSGETALYVAAE
Sbjct:    16 KKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVAAE 75

Query:    72 YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
             YG V++V+EMI  +D +L  IKARNG+DAFHIAAKQG L+VLK+L EA  EL MT D SN
Sbjct:    76 YGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDLSN 135

Query:   132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
             TTALHTA++QGH EVV FLLE GS+LA IA+SNGKTALHSA+RNGH++++KALL+ EP I
Sbjct:   136 TTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEPAI 195

Query:   192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KL 249
              +R DKKGQTALHMAVKG ++E+V+EL+K +   IN+ D KGN+ALHIA RKGR Q  KL
Sbjct:   196 AIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIAARKGRSQIVKL 255

Query:   250 LNINGV-DKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQA-NSARELKQA 307
             L  N + D   +N+S ETALDTAEK G+ E+ +IL++HGVP  K+IKP   N ARELKQ 
Sbjct:   256 LLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQKHGVPSAKTIKPSGPNPARELKQT 315

Query:   308 VSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXXXXXX 367
             VSDIKHEVH+QLEHTR TRK V GIAK++NKMHTEGLNNAINS                 
Sbjct:   316 VSDIKHEVHNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAINSTTVVAVLIATVAFAAIF 375

Query:   368 SVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXXIERK 427
             +VPGQ+ +   ++P   S GEA+IA  TPF+IF IFDSIALFISLA          IE K
Sbjct:   376 TVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFISLAVVVVQTSVVVIESK 435

Query:   428 AKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSY 487
             AKKQMMAVINKLMWLAC++ISVAFLALS++VVG++ +  A+ VT IG  IM++T+GTM Y
Sbjct:   436 AKKQMMAVINKLMWLACVLISVAFLALSFVVVGEEEKWLAIWVTAIGATIMITTLGTMCY 495

Query:   488 WVIVNRIEXXXXXXXXXXXXXXXXXXXXXXVMLDSEFLNNEIK-LYAV 534
             W+I ++IE                       + DS+ L NE K +YA+
Sbjct:   496 WIIQHKIEAANLRNIRRSSINSISGSWGIPQLTDSDILQNECKKMYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1437 (510.9 bits), Expect = 3.9e-147, P = 3.9e-147
 Identities = 292/492 (59%), Positives = 362/492 (73%)

Query:    12 KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
             K M KQ+TA+RDDTPL + VR G  +L+L+MI  +  +EL+E+L++ NQSGETALYVAAE
Sbjct:     6 KTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAE 65

Query:    72 YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
             YGY DMV+ ++++ D+ LAG KA+NG+DAFHIAAK G L+VL +L+EA PEL  TFDSS 
Sbjct:    66 YGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSK 125

Query:   132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
             TTALHTA+SQGH E+V FLL+KG  LA IARSNGKTALHSAARNGH  IVK L+ K+ G+
Sbjct:   126 TTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGM 185

Query:   192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQK 248
             V R DKKGQTALHMAVKGQ+ E+VD L++ +  +IN  D KGN+ LHIA RK R   VQ 
Sbjct:   186 VTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQT 245

Query:   249 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ-----ANSARE 303
             +L    V +  +NKS ETALD AEKTG  EI  +L++ G+   +SIKP      + S+R+
Sbjct:   246 VLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRK 305

Query:   304 LKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXX 363
             LK+ VS+I HEVH QLE T  TR+ + GIAKR+NKMHTEGLNNAINS             
Sbjct:   306 LKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAF 365

Query:   364 XXXXSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXX 423
                 +VPGQ+ D P ++PP  S GEA  AP+  FLIF++FDS ALFISLA          
Sbjct:   366 AAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVV 425

Query:   424 IERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIG 483
             IER+AKKQMMA+INKLMW+ACIMISVAF++LS++VVG+  +  AV VT IG +IMVST+G
Sbjct:   426 IERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLG 485

Query:   484 TMSYWVIVNRIE 495
             TM YWVI NRIE
Sbjct:   486 TMCYWVIANRIE 497

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
 Identities = 262/538 (48%), Positives = 350/538 (65%)

Query:     6 EQQQSW---KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSG 62
             E+Q S+   ++ K +   KR D+ L    RTG++  V ++I   GD EL+E+LSK N  G
Sbjct:   131 ERQLSFIGERRKKNESPGKRGDSSLHIAARTGNLSKVKELIRGCGD-ELKELLSKQNLEG 189

Query:    63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
             ET LY AAE G+  +V EM+++ D   A I ARNG+D FH+AAKQG LEVLKIL+E  P 
Sbjct:   190 ETPLYTAAENGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPN 249

Query:   123 LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK 182
             L MT D S TTALHTA++QGH++VV  LLE  S LA IA++NGKTALHSAAR GH+E+VK
Sbjct:   250 LAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVK 309

Query:   183 ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR 242
             +L+ K+P I  R DKKGQTALHMAVKGQ+  +V ELVK +  ++++ D KGN+ LHIAT 
Sbjct:   310 SLIGKDPSIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATN 369

Query:   243 KGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI-KPQA 298
             KGR   V+ L++  G++   INK+ +T LD +EK G++E+  +LKE G    K + KPQ 
Sbjct:   370 KGRIKIVRCLVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQ- 428

Query:   299 NSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXX 358
             N A++LKQ VSDIKHEV  QL+ +R+T   V  IAKR+ K+H  GLNNAINS        
Sbjct:   429 NPAKQLKQTVSDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLI 488

Query:   359 XXXXXXXXXSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXX 418
                      ++PGQ+ +  D    ++  G+AHIA K PFL+F IFDS+ALFISLA     
Sbjct:   489 ATVAFAAIFTIPGQYEE--DRSKGELL-GQAHIANKAPFLVFFIFDSLALFISLAVVVVQ 545

Query:   419 XXXXXIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIM 478
                  IE+KAKK+++ VINKLMW AC+ IS+AF++LSYIVVG +    AV  T IG  IM
Sbjct:   546 TSVVVIEQKAKKKLVFVINKLMWCACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTIM 605

Query:   479 VSTIGTMSYWVIVNRIEXXXXXXXXXXXXXXXXXXXXXXVMLDSEFLNNEI--KLYAV 534
             ++TIG M Y V+++R+E                      +  DS+ LN E   ++YA+
Sbjct:   606 LTTIGAMCYCVVMHRMEESKLRSIRKERSKSQSFSMSR-MPSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1171 (417.3 bits), Expect = 6.0e-119, P = 6.0e-119
 Identities = 253/529 (47%), Positives = 336/529 (63%)

Query:    12 KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSY-GDMELREMLSKMNQSGETALYVAA 70
             +K K     KR D+PL    RTG++  V+++I +  G  EL+E+ SK N  GET LY AA
Sbjct:   102 RKKKTDSPGKRGDSPLHLAARTGNLGKVMELIRACNGIEELKELSSKQNLEGETPLYSAA 161

Query:    71 EYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSS 130
             E G+  +V EM+++ D   A +KARNG+D FH+AAKQG +E LK L+E  P L MT D S
Sbjct:   162 ENGHSLVVEEMLKHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVDLS 221

Query:   131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
              TTALHTA+SQGH +VV  LL+  S LA IA++NGKTALHSAAR GH E+VK+L+  +  
Sbjct:   222 CTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLIGNDAS 281

Query:   191 IVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQ 247
             I  R DKKGQTALHMAVKGQ+  +V ELVK +P I+++ D+KGN+ LH AT KGR   V+
Sbjct:   282 IGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVR 341

Query:   248 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQA 307
              L++ +G++   +NK+ +TALD AEK G+ E+  +LKE G    K +    N A++L Q 
Sbjct:   342 CLVSFDGINLNAMNKAGDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPRNPAKQLNQT 401

Query:   308 VSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXXXXXX 367
             VSDIKHEV  QL+ +R+T   V  IAKR+ K+H  GLNNAINS                 
Sbjct:   402 VSDIKHEVQSQLQQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATVAFAAIF 461

Query:   368 SVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXXIERK 427
             ++PGQ+ +  D     +  GEA IA K PFL+F IFDS+ALFISLA          IE+K
Sbjct:   462 TIPGQYEE--DRTKGLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQK 519

Query:   428 AKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVAVTFIGTVIMVSTIGTMSY 487
             AKK ++ VINKLMWLAC+ ISVAF++LS+IVVG +    A+  T IG  IM++TIG M Y
Sbjct:   520 AKKNLVFVINKLMWLACLFISVAFVSLSFIVVGKEDIWLAICATIIGGTIMLTTIGAMCY 579

Query:   488 WVIVNRIEXXXXXXXXXXXXXXXXXXXXXXVMLDSEFLNNEI--KLYAV 534
              V+++RIE                      +  +SE LN E   ++YA+
Sbjct:   580 CVVMHRIEESKLKSLRKERSKSKSFSLSH-MPSESEILNGEFNKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 210/506 (41%), Positives = 293/506 (57%)

Query:     8 QQSWKKMKKQLTAKRDDTPLQSLVRTG---SVELVLDMISSY--G-------DMELREM- 54
             Q   KK  KQ+T + +DT L    + G   +V+ +L  I+S   G       D E+ E+ 
Sbjct:    59 QAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIR 118

Query:    55 ---LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLE 111
                ++++N+ GETAL+ AA+ G++D+V+E+++Y        K R+GYD  HIAA QG   
Sbjct:   119 ASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHA 178

Query:   112 VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
             ++++L++    L  TF  SN T L +A+ +GH EVV  LL K   L  I+RSN K ALH 
Sbjct:   179 IVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHL 238

Query:   172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
             AAR GH+E++KALLSK+P +  R DKKGQTALHMAVKGQS E+V  L+  +P I+   D 
Sbjct:   239 AARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDK 298

Query:   232 KGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 288
               N+ALH+ATRK R   V+ LL++   +   + +  +TALD AE    SE    +KE   
Sbjct:   299 SCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLA 358

Query:   289 PCGKSIKPQANSAR-ELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNA 347
               G     + N  R EL+  V+ IK++VH QLE T+ T K+VH I+K + K+H EG+NNA
Sbjct:   359 RSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNA 418

Query:   348 INSXXXXXXXXXXXXXXXXXSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIA 407
              NS                 +VPG   D  D        G A +  +  F IF IF+++A
Sbjct:   419 TNSVTVVAVLFATVAFAAIFTVPG--GDNND--------GSAVVVGRASFKIFFIFNALA 468

Query:   408 LFISLAXXXXXXXXXXIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWA 467
             LF SLA           E KA+K+++ VINKLMWLA +  SVAFLA SYIVVG      A
Sbjct:   469 LFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAA 528

Query:   468 VAVTFIGTVIMVSTIGTMSYWVIVNR 493
               VT +G VIM   +GTM+Y+V+ ++
Sbjct:   529 ELVTVVGGVIMAGVLGTMTYYVVKSK 554

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 206/504 (40%), Positives = 294/504 (58%)

Query:    12 KKMKKQLTAKRDDTPLQSLVRTG---SVELVLDMISSY--G-------DMELREMLS--- 56
             KK  KQ+T + +DT L    + G   SV+ +L  I S   G       D E+ ++++   
Sbjct:    77 KKYVKQVTGRHNDTELHLAAQRGDLASVKQILSDIDSQITGTITGADFDDEVAQIMTSVV 136

Query:    57 -KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVL 113
              ++N+ GET L+ AAE G +D+V+E++ Y  T++  +  +N  G+DA HIA  QG   ++
Sbjct:   137 NEVNELGETPLFTAAEKGNIDVVKELLPY--TTIESLMQKNLSGFDALHIACSQGHRSIV 194

Query:   114 KILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA 173
             ++L+E  P+L  T   SN T L +A+++GH EVV  LL K S+L  I+RSNGK ALH AA
Sbjct:   195 QLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAA 254

Query:   174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG 233
             R GH++IV+ LL K+P +  R DKKGQT+LHMAVKG S ++V  L++ +P I+ + D  G
Sbjct:   255 RQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVMLPDKFG 314

Query:   234 NSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 290
             N+ LHIATRK R   V +LL +   +   + +  +TA D AE   HSE    +KE    C
Sbjct:   315 NTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTHSEETAEIKEILSRC 374

Query:   291 GKSIKPQANSAR-ELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAIN 349
             G     + N  R EL++ V++IK +VH QLE TR+T K+V GIAK + K+H  G+NNA N
Sbjct:   375 GALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINNATN 434

Query:   350 SXXXXXXXXXXXXXXXXXSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALF 409
             S                 +VPG   D           G A +   T F IF IF++IALF
Sbjct:   435 SVTVVAVLFATVAFAAIFTVPGGDDDH----------GVAVMVHATSFKIFFIFNAIALF 484

Query:   410 ISLAXXXXXXXXXXIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVVGDDGRGWAVA 469
              SLA           E K +++++ VINKLMWLA +  +VAF++ SYIVVG   R  AV 
Sbjct:   485 TSLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVVGRRNRYAAVV 544

Query:   470 VTFIGTVIMVSTIGTMSYWVIVNR 493
             VT IGTV M   +  M+Y+V+ ++
Sbjct:   545 VTVIGTVTMTGILSIMTYYVVKSK 568

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 190/479 (39%), Positives = 284/479 (59%)

Query:    23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
             D + LQ LV   + + ++D  S      + E++S  N +GETA+Y++A     D+ R +I
Sbjct:    22 DLSQLQQLVDNLTGDELIDESSPCS--AVAELMSVQNDAGETAVYISAAENLEDIFRYLI 79

Query:    83 RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
             R+       I++++  +AFH+AAK+G L ++K L+   PEL    D+SNT+ L+ A+ Q 
Sbjct:    80 RFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQD 139

Query:   143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
             H+E+V  +L+   + A I R NGKT+LH+A R G L IVKAL+ K+  IV   DKKGQTA
Sbjct:   140 HLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTA 199

Query:   203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ---KLLNINGVDKAV 259
             LHMAVKG+S+E+V+E+++ +  I+N  D KGN+ALHIATRK R Q    LL    ++   
Sbjct:   200 LHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNA 259

Query:   260 INKSRETALDTAEKTGHSE----IGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHEV 315
             IN  +ETA+D A+K  +SE    I   L E G   G+ I  + + AR LK+AVSDIKHEV
Sbjct:   260 INNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGRE-DEARALKRAVSDIKHEV 318

Query:   316 HDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXXXXXXSVPGQFAD 375
               QL    +T + V GIAK + K+H E + N  NS                 ++PGQ+  
Sbjct:   319 QSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFT 378

Query:   376 KPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXXIERKAKKQMMAV 435
             +   +      G+A+IA +T F +F + ++ +LFISLA           + +A+K++++V
Sbjct:   379 EGSHV------GQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSV 432

Query:   436 INKLMWLACIMISVAFLALSYIVVGDDGRGW-AVAVTFIGTVIMVSTIGTMSYWVIVNR 493
             +NKLMW AC     AFLA+++ VVG  G  W A+ +T +G  I+V T+ +M Y+V   R
Sbjct:   433 VNKLMWAACACTFGAFLAIAFAVVGK-GNSWMAITITLLGAPILVGTLASMCYFVFRQR 490

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-070615-8 ankdd1a "ankyrin repeat and death domain containing 1A" [Danio rerio (taxid:7955)]

 Score = 295 (108.9 bits), Expect = 9.2e-24, P = 9.2e-24
 Identities = 90/293 (30%), Positives = 158/293 (53%)

Query:    48 DMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQ 107
             D+E    L+K+  SG+TA ++AAE+G++++V  +I         +K ++G  A H+AAKQ
Sbjct:   136 DLE-NVQLNKVENSGKTAFHLAAEHGHLEVVEFLIGMGCAH--NLKDKHGNTALHLAAKQ 192

Query:   108 GCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKT 167
             G  +VL+ +ME   E +   +    TALH AS  GH E ++ LLE G  +  +  S  +T
Sbjct:   193 GHSDVLQKIMET-GENIDERNIDGMTALHLASEGGHYECIRLLLEAGCNVNELTDSK-RT 250

Query:   168 ALHSAARNGHLEIVKALLSKEPGIVLRN-DKKGQTALHMAVKGQSIELVDELVKVEPVII 226
             ALH  A++     V+ L+  + GI L + D +  +ALH+AV   S E+V +L++     +
Sbjct:   251 ALHLVAQHASASEVRLLI--QAGINLDSVDTQHVSALHLAVLNNSTEIVKDLIEAG-CDL 307

Query:   227 NMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVINKSRETALDTAEKTGH-SEIGVIL 283
             ++ D +  +ALHIA   GR  + + + I+GV+  +++K  +++LD A +  H + + +I+
Sbjct:   308 DIFDNRLQTALHIAAEHGRLNIAETILISGVNLNLLDKQGKSSLDVAARGNHVNVVDMII 367

Query:   284 K-EHGVPCGKSIKPQANSAREL--KQAVSDIKH-EVHDQLEHTRETRKHVHGI 332
             K +      K  +P+    R +  K A   +K  E      H + +  H+  I
Sbjct:   368 KADRFYKWEKDHQPETQHIRSVLWKLASRFLKPGEWKTLARHWKFSEAHIRAI 420

GO:0007165 "signal transduction" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 111/480 (23%), Positives = 205/480 (42%)

Query:    24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
             +TPL      G++ ++  M+ + G+ E      K+N+ G+TA  +A     V+  R ++ 
Sbjct:   103 NTPLHLAAEIGNINILWKMLET-GEAECM----KINKQGQTAFILACLNNNVNSARILVE 157

Query:    84 YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH 143
                TS   +   N   AF  + +Q    ++  ++E  P L++  D   +T LH A   G+
Sbjct:   158 --GTSSMTMVELNA--AF--SEQQQV--IIDSILEKFPNLILDADEEQSTLLHKACKSGN 209

Query:   144 VEVVKFLLEK--GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV-LRNDKKGQ 200
             +E+ + LL+      +A     +G T LH A  NG +EI+K  L K P    +      +
Sbjct:   210 LEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVINGSVEILKEFLCKAPSSFNITTQGTIE 269

Query:   201 TALHMAVKGQSIELVDELVKVEPV--IINMVDAKGNSALHIATR---KGRVQKLLNINGV 255
             T  H+A K Q  +    + +   +  ++  +DA+ N+ LH+A        V+ +L+   +
Sbjct:   270 TVFHLAAKYQKTKAFIFMAQSANIRQLLYSLDAEDNTVLHVAASVDSTSLVRHILSETTI 329

Query:   256 DKAVINKSRETALDTAEKTG--HSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKH 313
             D  + NK    A+D  +K G     + +  ++      +  +     A E  + + +  +
Sbjct:   330 DVTLKNKKGFAAVDLIDKEGVDFPLLSLWFRDEAEKIQRPAR-YVKFAHEPVELIRNTNN 388

Query:   314 -EVHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSXXXXXXXXXXXXXXXXXSVPGQ 372
              E         +  +       +  +MH+E L NA N+                 + PG 
Sbjct:   389 GEKLSSESRAMDLLREGRDPRNKEREMHSESLQNARNTITIVAVLIASVAFTCGINPPGG 448

Query:   373 FADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFISLAXXXXXXXXXXIERKAKKQM 432
                      P +  G+A       F IF + ++IALF SL+             KA K  
Sbjct:   449 VHQDG----PFI--GKATAGRTLAFKIFSVANNIALFTSLSIVTLLVSIISYRTKALKMC 502

Query:   433 MAVINKLMWLACIMISVAFLALSYIVVG-DDGRGWAVAVTF-IGTVIMVSTIGTMSYWVI 490
             + + +K+MWLA   ++ A+ A ++I V  ++G  W V  T  I +V + S    +S+ ++
Sbjct:   503 VVIAHKMMWLAVASMATAYAASAWITVPHNEGSKWLVYTTSAIASVALGSMFVYVSFMMV 562

GO:0008150 "biological_process" evidence=ND

WB|WBGene00185078 F40G9.17 [Caenorhabditis elegans (taxid:6239)]

 Score = 254 (94.5 bits), Expect = 3.8e-21, P = 3.8e-21
 Identities = 69/194 (35%), Positives = 98/194 (50%)

Query:    79 REMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138
             R + RY    L G    +G    H AA  G L +L+  +   PE+    D    T L  A
Sbjct:    34 RLLTRY--PKLVGYTDDSGRSTIHFAAVGGSLPLLQFAILNDPEMAHKTDDLGWTPLMIA 91

Query:   139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
             SS G V+VV++LL           SN +T+LH A    H+EIVK L+  +P I+   DK 
Sbjct:    92 SSAGRVDVVRYLLTLPDVDVKHTNSNKQTSLHYACSKNHVEIVKLLIEADPNIINLPDKF 151

Query:   199 GQTALHMAV-KGQSIELVDELVKVEPVIINMVDAKGNSALHIAT--RKGRVQKLLNINGV 255
             G TALH A  +G  + +V  LV      ++  D +GN+ALH+A    +G V  LL   G 
Sbjct:   152 GATALHRAASRGNDV-IVRALVSTGKCSLDRQDGEGNTALHLACDENRGDVAILLVNRGA 210

Query:   256 DKAVINKSRETALD 269
             D  ++NK ++T L+
Sbjct:   211 DMKMLNKEKQTPLE 224

GO:0040010 "positive regulation of growth rate" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	534
pfam13962	114	pfam13962, PGG, Domain of unknown function	7e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-15
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-13
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	3e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	5e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.002
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.004
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  112 bits (283), Expect = 7e-30
 Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 342 EGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKTP-FLIF 400
           E L    NS  VVA LIATV FAA F+ PG +             G   +A K   F  F
Sbjct: 2   EWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDG----GHHAGTPILAGKPRRFKAF 57

Query: 401 IIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIV 458
            + ++IA   SL  VI+   +V    +   +++A+   L+WL+ + + VAF A SY V
Sbjct: 58  FVSNTIAFVASLVAVILLLYIVPSFSRRLPRLLAL-LTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  108 bits (271), Expect = 4e-28
 Identities = 54/126 (42%), Positives = 75/126 (59%), Gaps = 6/126 (4%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           D    T LH A+S GH+EVVK LLE G+ +     ++G+T LH AA+NGHLEIVK LL K
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR-- 245
              +  R DK G T LH+A +  ++++V  L+K     +N  D  G + LH+A + G   
Sbjct: 63  GADVNAR-DKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 246 -VQKLL 250
            V+ LL
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  107 bits (268), Expect = 1e-27
 Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 3/128 (2%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
            +  +G    H+AA  G LEV+K+L+E   ++    D+   T LH A+  GH+E+VK LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           EKG+ +    + +G T LH AARNG+L++VK LL     +  R DK G+T LH+A K   
Sbjct: 61  EKGADVNARDK-DGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGH 118

Query: 212 IELVDELV 219
           +E+V  L+
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  103 bits (259), Expect = 2e-26
 Identities = 46/127 (36%), Positives = 76/127 (59%), Gaps = 4/127 (3%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           ++ G T L++AA  G++++V+ ++          K  +G    H+AAK G LE++K+L+E
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN--AKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
              ++    D    T LH A+  G+++VVK LL+ G+ +      +G+T LH AA+NGHL
Sbjct: 62  KGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHL 119

Query: 179 EIVKALL 185
           E+VK LL
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.6 bits (246), Expect = 1e-24
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVE 222
            +G+T LH AA NGHLE+VK LL     +  + D  G+T LH+A K   +E+V  L++ +
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLE-K 62

Query: 223 PVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIG 280
              +N  D  GN+ LH+A R G +   KLL  +G D    +K   T L  A K GH E+ 
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVV 122

Query: 281 VIL 283
            +L
Sbjct: 123 KLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 88.5 bits (220), Expect = 2e-21
 Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 4/95 (4%)

Query: 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
            H+AAK G LE++K+L+E   ++         TALH A+  G++E+VK LLE G+ +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVN---LGDTDTALHLAARNGNLEIVKLLLEHGADV-NA 56

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN 195
              +G TALH AARNG+LEIVK LL     I L++
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 4/91 (4%)

Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           LH A+  G++E+VK LLEKG   A +   +  TALH AARNG+LEIVK LL     +  +
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 195 NDKKGQTALHMAVKGQSIELVDELVKVEPVI 225
            DK G TALH+A +  ++E+V  L++    I
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 8/96 (8%)

Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
           LH AA+NG+LE+VK LL K   +   N     TALH+A +  ++E+V  L++     +N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHG-ADVNA 56

Query: 229 VDAKGNSALHIATRKGR---VQKLLNINGVDKAVIN 261
            D  GN+ALH+A R G    V+ LL  +G D  + +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLE-HGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 69.9 bits (170), Expect = 2e-13
 Identities = 53/258 (20%), Positives = 83/258 (32%), Gaps = 43/258 (16%)

Query: 72  YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
                ++  ++      L+    +       +A          +L   +   L   D   
Sbjct: 14  CFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDG 73

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL-----EIVKALLS 186
              LH+A+S+G  ++VK LL  G+ +      +G T LH AA NG+      E+ K LL 
Sbjct: 74  RLPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLE 132

Query: 187 K--EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG 244
              +  +    D+ G T LH A      ++V                             
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIV----------------------------- 163

Query: 245 RVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSAREL 304
              +LL   G D    N    TALD A K G  E+  +L + G+        + N     
Sbjct: 164 ---ELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLL---KFNLEGVA 217

Query: 305 KQAVSDIKHEVHDQLEHT 322
              VS         L   
Sbjct: 218 NANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             TALH A+  G +E+VK+LLEKG  +      +G TALH AA NG+LE++K LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 61.0 bits (147), Expect = 2e-10
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 14/175 (8%)

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQG---- 108
           L+  +  G   L+ AA  G   +V+ ++     S A + A++  G    H+AA  G    
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLA----SGADVNAKDADGDTPLHLAALNGNPPE 121

Query: 109 -CLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG 165
             +EV K+L+E  A  ++    D    T LH A+  G  ++V+ LLE G+   +   S G
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS-RNSYG 180

Query: 166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
            TAL  AA+NG +E+VK LL K   + L        A     K   + L   ++ 
Sbjct: 181 VTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 72/276 (26%), Positives = 118/276 (42%), Gaps = 42/276 (15%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL   +R+G  ++V   I    D      ++ +N      L  A + G  D+++ +I  
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGAD------INHINTKIPHPLLTAIKIGAHDIIKLLIDN 90

Query: 85  H-DTSL--------------------AGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
             DTS+                      IK        H A K+G LE +K+L E   ++
Sbjct: 91  GVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV 150

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
            +  D+     +H A      +++K LLEKG+  A +  +NG++ LH+AA  G    +K 
Sbjct: 151 NIEDDNGC-YPIHIAIKHNFFDIIKLLLEKGA-YANVKDNNGESPLHNAAEYGDYACIKL 208

Query: 184 LLSKEPGIVLRNDKKGQTALHMAV--KGQSIELVDELVKVEPVIINMVDAKGNSALHIAT 241
           L+     I+ +  K G T LH A+     +IEL+     +    IN  D  G++ LH A 
Sbjct: 209 LIDHGNHIMNKC-KNGFTPLHNAIIHNRSAIELL-----INNASINDQDIDGSTPLHHAI 262

Query: 242 R----KGRVQKLLNINGVDKAVINKSRETALDTAEK 273
                   +  LL  +  D ++ +   E  +DTA K
Sbjct: 263 NPPCDIDIIDILL-YHKADISIKDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 60.7 bits (147), Expect = 9e-10
 Identities = 62/264 (23%), Positives = 105/264 (39%), Gaps = 35/264 (13%)

Query: 51  LREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH-IAAKQGC 109
           ++EM+  +N+       VA        +++     +  +  I   N Y     I      
Sbjct: 86  MKEMIRSINKCSVFYTLVA--------IKDAFNNRNVEIFKIILTNRYKNIQTIDLVYID 137

Query: 110 ---------LEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
                     E+ K+L+    ++ M       TALH A+      + + LL  G+ +   
Sbjct: 138 KKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP 197

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV-KGQSIELVDEL- 218
            ++N  + LH A ++ +  IV  LL        R DK G T LH++V   +  +++  L 
Sbjct: 198 DKTN-NSPLHHAVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLL 255

Query: 219 -----VKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEK 273
                V  +  I+ +      +ALH + +  R  KLL   G D   +N  + T L +A K
Sbjct: 256 EHGVDVNAKSYILGL------TALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVK 309

Query: 274 TGHS-EIGVILKEHGVPCGKSIKP 296
                 IG IL  + +   K IKP
Sbjct: 310 QYLCINIGRILISN-ICLLKRIKP 332

Length = 477

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 8/97 (8%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
               TPL    + G +E+V  ++    D+  R      ++ G T L++AA  G +D+V+ 
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR------DKDGNTPLHLAARNGNLDVVKL 91

Query: 81  MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
           ++++        + ++G    H+AAK G LEV+K+L+
Sbjct: 92  LLKHGA--DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           G  A H AA  G LE++K L+E   ++  T D    TALH A+  G++EV+K LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
           LL   P  +   D  G T LH+A K  ++ELV  L+K   V +N+ D+ G +AL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 26/98 (26%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 31  VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLA 90
            + G++ELV  ++    D+ L +         +TAL++AA  G +++V+ ++ +     A
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDT--------DTALHLAARNGNLEIVKLLLEHG----A 52

Query: 91  GIKAR--NGYDAFHIAAKQGCLEVLKILMEALPELLMT 126
            + A+  +G  A H+AA+ G LE++K+L+E   ++ + 
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
           TALH AA +G LE+VK LL K    + R D+ G TALH+A +  ++E++  L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGV-DINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 150 LLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 206
           LLE G         NG T LH AA+ G LE+V+ LL K    +   D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 35/216 (16%)

Query: 101 FHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHV-----EVVKFLLEK 153
            ++A +   ++V+KIL++  A      +   +N+T LH  S+  +      E+VK LLE 
Sbjct: 39  LYLAKEARNIDVVKILLDNGADIN---SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95

Query: 154 GSTLATIARSNGKTALHSAARN--GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           G+ +      NG T L  A         IV+ LL     + ++N   G+  LH+ ++   
Sbjct: 96  GANVNAPDN-NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNK 153

Query: 212 IEL------------VDELVKVEPVI-----INMVDAKGNSALHIATRKGR---VQKLLN 251
           I+L            ++   +V  ++     IN+ D  G + LH A        V+ LL+
Sbjct: 154 IDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD 213

Query: 252 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           + G +  ++NK  +T L  A    + EI  +L  +G
Sbjct: 214 L-GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 248

Length = 422

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 227 NMVDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 283
           N  D  G + LH+A   G    V+ LL  NG D    +    T L  A K GH EI  +L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 284 KEHGV 288
            E G 
Sbjct: 60  LEKGA 64

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 32/235 (13%)

Query: 23  DDTPLQSLVRTGS---VELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYV-DMV 78
             TPL   +   S    ++V  ++ +  D+   E        G T L++        D++
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER------CGFTPLHLYLYNATTLDVI 100

Query: 79  REMIRYHDTSLAGIKARNGYD--AFHIAAKQGCL--EVLKILME--ALPELLMTFDSSNT 132
           + +I+      A + A++       H+      +  +V+++L+   A    L   D    
Sbjct: 101 KLLIKAG----ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL---DLYGM 153

Query: 133 TALH--TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL--EIVKALLSKE 188
           T L     S   +VE+++ L++ G+ +        ++ LH   ++      IV+ L+   
Sbjct: 154 TPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRAG 212

Query: 189 PGIVLRNDKKGQTALHMAVKGQSIE--LVDELVKVEPVIINMVDAKGNSALHIAT 241
                 +   G T LH    G S +  LV  L+ +  + IN  +  G + LH A 
Sbjct: 213 CDPAATDM-LGNTPLHSMATGSSCKRSLVLPLL-IAGISINARNRYGQTPLHYAA 265

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRND 196
           +G T LH AARNGHLE+VK LL     +  R+ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 128 DSSNTTALHTASSQGHV--EVVKFLLEKGSTLATIARSN---------------GKTALH 170
           +S     LH       +  +++K L++KG  +    R N               G T LH
Sbjct: 138 NSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLH 197

Query: 171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI 225
            A  N + E VK LL       L N   G T LH+A+   + E+   L+   P I
Sbjct: 198 YAVYNNNPEFVKYLLDLGANPNLVNK-YGDTPLHIAILNNNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
           D    T LH A + GHV+VV+ LLE G+   T+   +GKT L  A  NG  E+V+ L  
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 32/150 (21%), Positives = 68/150 (45%), Gaps = 13/150 (8%)

Query: 47  GDMELREMLSKMN--------QSGETALYVAAEYGYVDMVREMIRYH-DTSLAGIKARNG 97
           GD++  E L  +         + G T L++A     +D+++ +I    D     I   + 
Sbjct: 79  GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD---IPNTDK 135

Query: 98  YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL 157
           +   H+A   G ++ +++L++    L +  D    T L  A ++G + + K LL+ G+ +
Sbjct: 136 FSPLHLAVMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Query: 158 ATIARSNGKTALHSAARNGHLEIVKALLSK 187
               ++    AL  A  N  ++IV+  + +
Sbjct: 195 DYFGKNGCVAALCYAIENNKIDIVRLFIKR 224

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
           TALH A     +ELV  L++ + V IN  D  GN+ALHIA   G ++
Sbjct: 3   TALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLE 48

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 118 EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH 170
           E  P  L   D +  T LH A+  G +E+V++LL+ G  L  +  S+G TAL 
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALD 54

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 218 LVKVEPVIINMVDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTA 271
           L++  P+ +N  D  GN+ LH+A + G    VQ LL   GVD  + +    TALD A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 62/232 (26%)

Query: 49  MELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQG 108
            EL   LS     G+T L+  +   YVD V  ++ +   +      R          +  
Sbjct: 69  TELLLNLSCRGAVGDTLLHAISL-EYVDAVEAILLHLLAA-----FRKSGPLELANDQYT 122

Query: 109 CLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG--- 165
                            T      TALH A+ + + E+VK LLE+G+++   AR+ G   
Sbjct: 123 SEF--------------TPG---ITALHLAAHRQNYEIVKLLLERGASVP--ARACGDFF 163

Query: 166 -KTALHSAARNGHLEI----------VKALLSKEPGIVLRNDKKGQTALHMAV-----KG 209
            K+    +  +G   +          + ALLS++P  +L  D  G T LH+ V     K 
Sbjct: 164 VKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKA 223

Query: 210 QSIELV--------------DELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
           +  EL                +  ++E VI+N    +G + L +A ++GR+ 
Sbjct: 224 EYEELSCQMYNFALSLLDKLRDSKELE-VILNH---QGLTPLKLAAKEGRIV 271

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138
           H          NG    H+AAK G LE+++ L++     L   DS   TAL  A
Sbjct: 4   HGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 50/205 (24%)

Query: 131 NTTALHT---ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH-LEIVKALLS 186
             T LH     SS+   ++V+ LLE G+ +    R  G T LH    N   L+++K L+ 
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC-GFTPLHLYLYNATTLDVIKLLIK 105

Query: 187 K------------------------EPGIV---LRN-------DKKGQTALHMAVK--GQ 210
                                     P ++   LR        D  G T L + +K    
Sbjct: 106 AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNA 165

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHI-----ATRKGRVQKLLNINGVDKAVINKSRE 265
           ++EL+  L+     +   VD +  S LH        R   V++L+   G D A  +    
Sbjct: 166 NVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGN 223

Query: 266 TALDTAEKTGHSEIGVILK--EHGV 288
           T L +       +  ++L     G+
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLIAGI 248

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/22 (63%), Positives = 16/22 (72%)

Query: 133 TALHTASSQGHVEVVKFLLEKG 154
           T LH A+  GH+EVVK LLE G
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAG 25

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)

Query: 126 TFDSSNTTALHTASSQGHV--EVVKFLLEKGSTLATIARSNGKTALH---SAARNGHLEI 180
             +    T + +   +  V  E++KFL+E G+ +    R N  +ALH   S  +N   EI
Sbjct: 46  DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEI 105

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQS--IELVDELVKVEPVIINMVDAKGNSALH 238
           +K L+     I    D+ G+  LHM +   +  I ++  L+      +N  D   N+ L+
Sbjct: 106 LKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNNILY 163

Length = 209

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGI 191
           +G+T LH AA NG+LE+VK LL K   I
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 358 IATVAFAAI------FSVPGQFADKPDELPPKVSPGEAHIAPKTPFLIFIIFDSIALFIS 411
           I+T+ +  +      FS+P        ELP             T  +I ++   I LF+ 
Sbjct: 401 ISTIIWGLLTGSFFGFSLPIFLPGGYLELPEGYPSLSTENDVMTILIISLLIGVIHLFLG 460

Query: 412 LAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYI--VVGDDGRGWAVA 469
           L +  +         +      A + +L WL  I++ +  + L     VVG    G    
Sbjct: 461 LLLGFIN------NVRKGDYKDAFLAQLGWL-LILLGILLIVLGGFGLVVGLGPLGLIGK 513

Query: 470 VTFIGTVIMV 479
              IG V+++
Sbjct: 514 YLIIGGVVLI 523

Length = 646

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 22/173 (12%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP 121
           G T L++AA  GY D V  +++ H  ++  I+  NG  A   A      ++ +IL     
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLK-HACNV-HIRDANGNTALWNAISAKHHKIFRILYH--- 612

Query: 122 ELLMTFDS-SNTTA----LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG 176
                F S S+  A    L TA+ +  +  +K LL++G  + +     G TAL  A    
Sbjct: 613 -----FASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH-QGATALQVAMAED 666

Query: 177 HLEIVKALLSKEPGIV---LRNDKKGQTALHMAVK---GQSIELVDELVKVEP 223
           H+++V+ L+     +      +D        +  K   G SI +VD +   EP
Sbjct: 667 HVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEP 719

Length = 823

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGI 191
           +G T LH AARNG+LE+VK LL     I
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 16/163 (9%)

Query: 111 EVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH 170
            +  I+ME   +L           L+ A    +++VVK LL+ G+ + +    N  T LH
Sbjct: 17  NIKYIIME--DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSST-KNNSTPLH 73

Query: 171 SAARNGH-----LEIVKALLSKEPGIVLRNDKKGQTALHMAV--KGQSIELVDELVKVEP 223
             +   +      EIVK LL      V   D  G T L  A+  K  S  +V+ L+    
Sbjct: 74  YLSNIKYNLTDVKEIVKLLLEYG-ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD-NG 131

Query: 224 VIINMVDAKGNSALHIATRKGRVQ----KLLNINGVDKAVINK 262
             +N+ ++ G + LH+     ++     KLL   GVD    N+
Sbjct: 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA 104
           + +G T L++AA+YG +++V+ +++        ++  +G  A  +A
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKPG--VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 17/136 (12%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL      G  + VL ++    ++ +R+       +G TAL+ A    +  + R  I Y
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIRDA------NGNTALWNAISAKHHKIFR--ILY 611

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN---TTALHTASSQ 141
           H  S++   A    D    AAK+  L  +K L++      +  DS +    TAL  A ++
Sbjct: 612 HFASISDPHA--AGDLLCTAAKRNDLTAMKELLK----QGLNVDSEDHQGATALQVAMAE 665

Query: 142 GHVEVVKFLLEKGSTL 157
            HV++V+ L+  G+ +
Sbjct: 666 DHVDMVRLLIMNGADV 681

Length = 823

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 42  MISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY--HDTSLAGIKARN--G 97
           M S +    L EM+++ N  GE   + AA  G  D++     +   D   A + A +  G
Sbjct: 1   MESPHFMTCLEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAG 60

Query: 98  YDAFHIAA----KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
               HIAA     Q   E++  L+E   ++         TALH A+ +   ++ ++L
Sbjct: 61  QMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWL 117

Length = 169

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 20/106 (18%)

Query: 128 DSSNTTALHTASSQG-HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
           D    +AL  A+ +  ++E+ + LL      A      G T LH A    +++ V+A+L 
Sbjct: 49  DRLGRSALFVAAIENENLELTELLLNLSCRGAV-----GDTLLH-AISLEYVDAVEAILL 102

Query: 187 -------KEPGIVLRNDK------KGQTALHMAVKGQSIELVDELV 219
                  K   + L ND+       G TALH+A   Q+ E+V  L+
Sbjct: 103 HLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLL 148

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLAT 159
           T LH A+  G++E+VK LLE G+ +  
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	534
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	99.98
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PF13962	113	PGG: Domain of unknown function	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.87
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.85
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.82
PHA02741	169	hypothetical protein; Provisional	99.8
PHA02741	169	hypothetical protein; Provisional	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.66
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.65
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.61
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.59
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.58
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.44
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.41
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.31
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.28
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.28
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.27
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.22
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.21
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.19
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.19
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.14
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.12
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.12
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.1
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.78
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.62
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.56
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.47
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.45
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.38
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.37
PF13606	30	Ank_3: Ankyrin repeat	98.32
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.29
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.29
PF13606	30	Ank_3: Ankyrin repeat	98.28
KOG0522	560	consensus Ankyrin repeat protein [General function	98.27
KOG0522	560	consensus Ankyrin repeat protein [General function	98.24
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.18
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.17
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.07
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.03
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.01
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.89
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.79
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.64
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.61
KOG0511	516	consensus Ankyrin repeat protein [General function	97.52
KOG0511	516	consensus Ankyrin repeat protein [General function	97.4
KOG2384	223	consensus Major histocompatibility complex protein	97.25
KOG2384	223	consensus Major histocompatibility complex protein	97.14
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.56
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.53
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.33
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.72
KOG2505	591	consensus Ankyrin repeat protein [General function	94.39
KOG2505	591	consensus Ankyrin repeat protein [General function	93.02
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.49
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.37
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	87.14
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	86.29
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.1
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.01

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.1e-37  Score=319.12  Aligned_cols=261  Identities=25%  Similarity=0.336  Sum_probs=229.8

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc----------
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDT----------   87 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~----------   87 (534)
                      ..+..|.||||.|++.|+.++|++|++.|++.      +..+..|.||||.|+..|+.+++++|++.+..          
T Consensus        30 ~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~------n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~  103 (434)
T PHA02874         30 ISVDETTTPLIDAIRSGDAKIVELFIKHGADI------NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIE  103 (434)
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCC
Confidence            45678899999999999999999999999764      45678899999999999999999999997643          


Q ss_pred             -----------ccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 009452           88 -----------SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST  156 (534)
Q Consensus        88 -----------~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  156 (534)
                                 .+.+.++..|.||||+|+..|+.+++++|++++++... .|..|.||||+|+..|+.+++++|+++|++
T Consensus       104 ~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~  182 (434)
T PHA02874        104 KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI-EDDNGCYPIHIAIKHNFFDIIKLLLEKGAY  182 (434)
T ss_pred             HHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHCCcHHHHHHHHHCCCC
Confidence                       22445678899999999999999999999999988654 489999999999999999999999999998


Q ss_pred             chhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcH
Q 009452          157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA  236 (534)
Q Consensus       157 ~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~  236 (534)
                      + ...+..|.||||+|+..|+.+++++|++.++++... +..|.||||.|+..+. +.+++|+.  +..++.+|.+|+||
T Consensus       183 ~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~-~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~Tp  257 (434)
T PHA02874        183 A-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK-CKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDIDGSTP  257 (434)
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCCCH
Confidence            7 567889999999999999999999999999987644 7899999999999765 56777774  56789999999999


Q ss_pred             HHHHHHcC-c--HHHHhhhcCCChHhhhccCCcHHHHHHhcC-chhHHHHHHhcCCCC
Q 009452          237 LHIATRKG-R--VQKLLNINGVDKAVINKSRETALDTAEKTG-HSEIGVILKEHGVPC  290 (534)
Q Consensus       237 Lh~Aa~~~-~--~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~-~~~i~~~L~~~g~~~  290 (534)
                      ||+|+..+ +  +..+|+..|++++.+|..|.||+++|++.+ ..++++.|+..++..
T Consensus       258 Lh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~  315 (434)
T PHA02874        258 LHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLI  315 (434)
T ss_pred             HHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCch
Confidence            99999876 3  478999999999999999999999999987 667889999888654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=305.03  Aligned_cols=271  Identities=27%  Similarity=0.336  Sum_probs=203.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHH---------------------------HHHhcCCCCCcHHHHHHH
Q 009452           19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELRE---------------------------MLSKMNQSGETALYVAAE   71 (534)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~---------------------------~l~~~n~~g~T~Lh~Aa~   71 (534)
                      .|..|++|||+|+..+..+.++.|++.|++..+..                           .++..+..|.||||+||.
T Consensus        84 ~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~  163 (929)
T KOG0510|consen   84 KDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAAR  163 (929)
T ss_pred             hhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHh
Confidence            45556666666666666666666666665443220                           012334555555555555


Q ss_pred             cCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCcc----ccccCCCCCCcHHHHHHhcCCHHHH
Q 009452           72 YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE----LLMTFDSSNTTALHTASSQGHVEVV  147 (534)
Q Consensus        72 ~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~----~~~~~d~~g~tpLh~A~~~g~~~~v  147 (534)
                      .++.|..+.|++.+  .+....|.+|++|+|.|++.|..++.+.++...+.    ..+..|..|.||||.|+..|+.+++
T Consensus       164 ~~~~E~~k~Li~~~--a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~l  241 (929)
T KOG0510|consen  164 KNKVEAKKELINKG--ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEML  241 (929)
T ss_pred             cChHHHHHHHHhcC--CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHH
Confidence            55555555555544  23334455555556666666655555555552111    1223377889999999999999999


Q ss_pred             HHHHhcCCCchh--------------hhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHH
Q 009452          148 KFLLEKGSTLAT--------------IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE  213 (534)
Q Consensus       148 ~~Ll~~~~~~~~--------------~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  213 (534)
                      +.+|+.++....              ..|.+|.||||+|++.|+.+.++.|+..|+++... +.++.||||.|+.+|+.+
T Consensus       242 k~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k-n~d~~spLH~AA~yg~~n  320 (929)
T KOG0510|consen  242 KMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK-NKDEESPLHFAAIYGRIN  320 (929)
T ss_pred             HHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc-CCCCCCchHHHHHcccHH
Confidence            999998765432              24778999999999999999999999999998766 799999999999999999


Q ss_pred             HHHHHhh-cCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChH---hhhccCCcHHHHHHhcCchhHHHHHHhcC
Q 009452          214 LVDELVK-VEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKA---VINKSRETALDTAEKTGHSEIGVILKEHG  287 (534)
Q Consensus       214 iv~~Ll~-~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~---~~n~~g~T~l~~A~~~~~~~i~~~L~~~g  287 (534)
                      .++.|++ .+-.++|..|..|+||||+|++.|+.  .++|++.|++..   ..|.+|+||||+|+..|+..+++.|+.+|
T Consensus       321 tv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~G  400 (929)
T KOG0510|consen  321 TVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHG  400 (929)
T ss_pred             HHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcC
Confidence            9999999 56678999999999999999999975  799999999887   45999999999999999999999999999


Q ss_pred             CCCCC
Q 009452          288 VPCGK  292 (534)
Q Consensus       288 ~~~~~  292 (534)
                      ++...
T Consensus       401 a~I~~  405 (929)
T KOG0510|consen  401 ADIGV  405 (929)
T ss_pred             Cceee
Confidence            99844

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.8e-37  Score=324.11  Aligned_cols=263  Identities=22%  Similarity=0.310  Sum_probs=240.5

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHH-----HHHcCCHHHHHHHHHhCCccccc
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYV-----AAEYGYVDMVREMIRYHDTSLAG   91 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~-----Aa~~g~~~iv~~Ll~~~~~~~~~   91 (534)
                      ...+..+.||||.|++.|+.++|+.|++.|.++      +..+..|.||||+     |+..|+.++++.|++.|..  .+
T Consensus        29 ~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~------~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~--i~  100 (480)
T PHA03100         29 DYSYKKPVLPLYLAKEARNIDVVKILLDNGADI------NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN--VN  100 (480)
T ss_pred             hhhhcccchhhhhhhccCCHHHHHHHHHcCCCC------CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC--CC
Confidence            345678999999999999999999999999764      4557789999999     9999999999999998854  46


Q ss_pred             ccccCCCcHHHHHH--HCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcC--CHHHHHHHHhcCCCchhhhhcCCCc
Q 009452           92 IKARNGYDAFHIAA--KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG--HVEVVKFLLEKGSTLATIARSNGKT  167 (534)
Q Consensus        92 ~~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t  167 (534)
                      ..+..|.||||+|+  ..|+.+++++|++++++... .|..|.||||+|+..|  +.+++++|+++|+++ ...+..|.|
T Consensus       101 ~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~t  178 (480)
T PHA03100        101 APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI-KNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYT  178 (480)
T ss_pred             CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCC
Confidence            78899999999999  99999999999999988654 4889999999999999  999999999999997 567779999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC------CcHHHHHHhCCC--HHHHHHHhhcCCccccccCCCCCcHHHH
Q 009452          168 ALHSAARNGHLEIVKALLSKEPGIVLRNDKKG------QTALHMAVKGQS--IELVDELVKVEPVIINMVDAKGNSALHI  239 (534)
Q Consensus       168 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~~~--~~iv~~Ll~~~~~~in~~d~~G~T~Lh~  239 (534)
                      |||+|+..|+.+++++|+++|+++... +..|      .||||.|+..++  .+++++|++ .+.++|.+|..|.||||+
T Consensus       179 pL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~g~TpL~~  256 (480)
T PHA03100        179 PLHIAVEKGNIDVIKFLLDNGADINAG-DIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVYGFTPLHY  256 (480)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCccCC-CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHH
Confidence            999999999999999999999987654 6677      899999999999  999999999 577899999999999999


Q ss_pred             HHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCC
Q 009452          240 ATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG  291 (534)
Q Consensus       240 Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~  291 (534)
                      |+..++.  .++|+..|+|++..|..|.||+++|+..++.+++++|+++|++..
T Consensus       257 A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        257 AVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            9999986  688999999999999999999999999999999999999998653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.7e-36  Score=311.73  Aligned_cols=267  Identities=22%  Similarity=0.236  Sum_probs=232.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHH
Q 009452           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (534)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (534)
                      ..|+.|+..|+++.|+.|++.++.     .++..+.+|.||||.|++.|+.++|++|++.|.  +.+..+..|.||||.|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~-----~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga--~~n~~~~~~~t~L~~A   75 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGN-----CINISVDETTTPLIDAIRSGDAKIVELFIKHGA--DINHINTKIPHPLLTA   75 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHH
Confidence            468999999999999999987653     234567889999999999999999999999874  4556788899999999


Q ss_pred             HHCCCHHHHHHHHhhCccc----------------------cccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhh
Q 009452          105 AKQGCLEVLKILMEALPEL----------------------LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR  162 (534)
Q Consensus       105 a~~g~~~iv~~Ll~~~~~~----------------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~  162 (534)
                      +..|+.+++++|++++++.                      .+..|..|.||||+|+..|+.+++++|+++|+++ ...|
T Consensus        76 ~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d  154 (434)
T PHA02874         76 IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIED  154 (434)
T ss_pred             HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcC
Confidence            9999999999999887542                      2345788999999999999999999999999997 6678


Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHH
Q 009452          163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR  242 (534)
Q Consensus       163 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~  242 (534)
                      ..|.||||+|+..|+.+++++|++.+++.... |..|.||||.|+..|+.+++++|++ .+.+++.++..|.||||+|+.
T Consensus       155 ~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~-~~~g~tpL~~A~~~g~~~iv~~Ll~-~g~~i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLLID-HGNHIMNKCKNGFTPLHNAII  232 (434)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCcCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999887644 8899999999999999999999999 566789999999999999999


Q ss_pred             cCcHHHHhhhcCCChHhhhccCCcHHHHHHhcC-chhHHHHHHhcCCCCCCCCCCccchH
Q 009452          243 KGRVQKLLNINGVDKAVINKSRETALDTAEKTG-HSEIGVILKEHGVPCGKSIKPQANSA  301 (534)
Q Consensus       243 ~~~~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~-~~~i~~~L~~~g~~~~~~~~~~~~~~  301 (534)
                      .+.....++..|++++..|..|.||||+|+..+ +.+++++|+++|++.......+..+.
T Consensus       233 ~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL  292 (434)
T PHA02874        233 HNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPI  292 (434)
T ss_pred             CChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHH
Confidence            887643344478999999999999999999876 78999999999999876655544443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.6e-36  Score=315.45  Aligned_cols=262  Identities=18%  Similarity=0.232  Sum_probs=229.0

Q ss_pred             hcCCCCCCcHHHHHHHcC---CHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcC-CHHHHHHHHHhCCcccccc
Q 009452           17 QLTAKRDDTPLQSLVRTG---SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG-YVDMVREMIRYHDTSLAGI   92 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g-~~~iv~~Ll~~~~~~~~~~   92 (534)
                      ...+..|.||||.|+..|   +.++++.|++.|++.      +.++..|.||||+|+..| +.+++++|++.|  .+.+.
T Consensus        41 n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi------n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g--a~in~  112 (471)
T PHA03095         41 NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV------NAPERCGFTPLHLYLYNATTLDVIKLLIKAG--ADVNA  112 (471)
T ss_pred             ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC--CCCCC
Confidence            345778999999999998   999999999999774      556789999999999999 599999999987  44677


Q ss_pred             cccCCCcHHHHHH--HCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcC--CHHHHHHHHhcCCCchhhhhcCCCcH
Q 009452           93 KARNGYDAFHIAA--KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG--HVEVVKFLLEKGSTLATIARSNGKTA  168 (534)
Q Consensus        93 ~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tp  168 (534)
                      ++..|.||||+|+  ..++.+++++|++.++++.. .|..|.||||+|+..+  +.+++++|+++|+++... +..|.||
T Consensus       113 ~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~-~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~  190 (471)
T PHA03095        113 KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA-LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSL  190 (471)
T ss_pred             CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCH
Confidence            8889999999999  55688999999999988654 4889999999998866  689999999999998554 8899999


Q ss_pred             HHHHHHc--CcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCH--HHHHHHhhcCCccccccCCCCCcHHHHHHHcC
Q 009452          169 LHSAARN--GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI--ELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (534)
Q Consensus       169 Lh~A~~~--g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~--~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~  244 (534)
                      ||.|+..  ++.++++.|++.|.++... |..|.||||+|+..|+.  .+++.|++ .+.++|.+|..|+||||+|+..|
T Consensus       191 Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~-d~~g~tpLh~Aa~~~~~~~~~v~~ll~-~g~din~~d~~g~TpLh~A~~~~  268 (471)
T PHA03095        191 LHHHLQSFKPRARIVRELIRAGCDPAAT-DMLGNTPLHSMATGSSCKRSLVLPLLI-AGISINARNRYGQTPLHYAAVFN  268 (471)
T ss_pred             HHHHHHHCCCcHHHHHHHHHcCCCCccc-CCCCCCHHHHHHhcCCchHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcC
Confidence            9999864  7889999999999987654 89999999999998875  57777887 67789999999999999999998


Q ss_pred             cH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCC
Q 009452          245 RV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  290 (534)
Q Consensus       245 ~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~  290 (534)
                      +.  ..+|+..|+|++.+|..|.||+++|+..|+.++++.|++.+++.
T Consensus       269 ~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        269 NPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            75  68888999999999999999999999999999999999988764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.6e-35  Score=317.07  Aligned_cols=261  Identities=17%  Similarity=0.141  Sum_probs=220.5

Q ss_pred             CCCCCcHHHHHHH--cCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCC--HHHHHHHHHhCCccccccccc
Q 009452           20 AKRDDTPLQSLVR--TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGY--VDMVREMIRYHDTSLAGIKAR   95 (534)
Q Consensus        20 ~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~--~~iv~~Ll~~~~~~~~~~~~~   95 (534)
                      |..|.||||.|+.  .++.+++++|++.|++.      +.+|..|.||||+|+..|+  .++|++|++.|+  +.+.++.
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV------N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GA--DVN~kD~  245 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNV------NLQNNHLITPLHTYLITGNVCASVIKKIIELGG--DMDMKCV  245 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC--CCCCCCC
Confidence            6789999999875  46899999999999764      5668999999999999995  589999999884  5667899


Q ss_pred             CCCcHHHHH-------------------------------------HHCCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009452           96 NGYDAFHIA-------------------------------------AKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (534)
Q Consensus        96 ~g~t~Lh~A-------------------------------------a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (534)
                      .|.||||.|                                     +..|+.++++.|+++++++.. .|..|+||||+|
T Consensus       246 ~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~-kD~~G~TPLH~A  324 (764)
T PHA02716        246 NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHY-KDSAGRTCLHQY  324 (764)
T ss_pred             CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceec-cCCCCCCHHHHH
Confidence            999999975                                     445788999999999988654 499999999998


Q ss_pred             Hh--cCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHH--------------cCcHHHHHHHHhcCCCCcccCCCCCCcH
Q 009452          139 SS--QGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR--------------NGHLEIVKALLSKEPGIVLRNDKKGQTA  202 (534)
Q Consensus       139 ~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~--------------~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  202 (534)
                      +.  .++.+++++|+++|+++ +.+|..|.||||+|+.              .|+.+++++|+++|+++.. .|..|.||
T Consensus       325 aa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~-kn~~G~TP  402 (764)
T PHA02716        325 ILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA-VNCLGYTP  402 (764)
T ss_pred             HHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC-cCCCCCCh
Confidence            74  46899999999999998 6689999999999875              3789999999999998765 48999999


Q ss_pred             HHHH----HhCCCHHHHHHHhhcCC-------------------------------------------------------
Q 009452          203 LHMA----VKGQSIELVDELVKVEP-------------------------------------------------------  223 (534)
Q Consensus       203 Lh~A----~~~~~~~iv~~Ll~~~~-------------------------------------------------------  223 (534)
                      ||.+    ...++.+++++|++.+.                                                       
T Consensus       403 Lh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~  482 (764)
T PHA02716        403 LTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHC  482 (764)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHH
Confidence            9942    33567888888876321                                                       


Q ss_pred             -----ccccccCCCCCcHHHHHHHcCcH-------HHHhhhcCCChHhhhccCCcHHHHHHhcCch-----hHHHHHHhc
Q 009452          224 -----VIINMVDAKGNSALHIATRKGRV-------QKLLNINGVDKAVINKSRETALDTAEKTGHS-----EIGVILKEH  286 (534)
Q Consensus       224 -----~~in~~d~~G~T~Lh~Aa~~~~~-------~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~-----~i~~~L~~~  286 (534)
                           ..+|..|..|+||||+|+..|+.       .++|+..|+|+|.+|++|+|||++|+..|+.     ++++.|+++
T Consensus       483 ~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~  562 (764)
T PHA02716        483 AIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDK  562 (764)
T ss_pred             HHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhc
Confidence                 01355688999999999998864       3789999999999999999999999999976     999999999


Q ss_pred             CCCCC
Q 009452          287 GVPCG  291 (534)
Q Consensus       287 g~~~~  291 (534)
                      |++..
T Consensus       563 ga~~~  567 (764)
T PHA02716        563 RPNVD  567 (764)
T ss_pred             CCCcc
Confidence            98753

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=319.50  Aligned_cols=272  Identities=19%  Similarity=0.186  Sum_probs=235.9

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc----------
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDT----------   87 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~----------   87 (534)
                      ..|..|.||||+|++.|+.++|++|++.|++.      +..+.+|.||||+|+..|+.++++.|++.+..          
T Consensus       173 ~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~------n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~  246 (682)
T PHA02876        173 AKDIYCITPIHYAAERGNAKMVNLLLSYGADV------NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLK  246 (682)
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc------CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHH
Confidence            46778999999999999999999999999764      34578899999999999999999988875432          


Q ss_pred             -----------------ccccccccCCCcHHHHHHHCCCH-HHHHHHHhhCccccccCCCCCCcHHHHHHhcC-CHHHHH
Q 009452           88 -----------------SLAGIKARNGYDAFHIAAKQGCL-EVLKILMEALPELLMTFDSSNTTALHTASSQG-HVEVVK  148 (534)
Q Consensus        88 -----------------~~~~~~~~~g~t~Lh~Aa~~g~~-~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~~v~  148 (534)
                                       ...+..+..|.||||+|+..|+. +++++|++.+.+... .|..|.||||+|+..| +.++++
T Consensus       247 ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~-~d~~g~TpLh~Aa~~g~~~~~v~  325 (682)
T PHA02876        247 AIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA-KNIKGETPLYLMAKNGYDTENIR  325 (682)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCCCHHHHH
Confidence                             12345567899999999999987 589999999887654 4899999999999999 599999


Q ss_pred             HHHhcCCCchhhhhcCCCcHHHHHHHc-CcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCcccc
Q 009452          149 FLLEKGSTLATIARSNGKTALHSAARN-GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIIN  227 (534)
Q Consensus       149 ~Ll~~~~~~~~~~~~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in  227 (534)
                      .|+..|+++ ...|..|.||||+|+.. ++.++++.|++.+.+++.. |..|.||||+|+..|+.+++++|++ .+.+++
T Consensus       326 ~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~-d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~  402 (682)
T PHA02876        326 TLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANVNAR-DYCDKTPIHYAAVRNNVVIINTLLD-YGADIE  402 (682)
T ss_pred             HHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccC-CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcc
Confidence            999999997 66888999999999985 5789999999999987654 8999999999999999999999999 677889


Q ss_pred             ccCCCCCcHHHHHHHcCcH---HHHhhhcCCChHhhhccCCcHHHHHHhcC-chhHHHHHHhcCCCCCCCCCCccc
Q 009452          228 MVDAKGNSALHIATRKGRV---QKLLNINGVDKAVINKSRETALDTAEKTG-HSEIGVILKEHGVPCGKSIKPQAN  299 (534)
Q Consensus       228 ~~d~~G~T~Lh~Aa~~~~~---~~ll~~~g~~~~~~n~~g~T~l~~A~~~~-~~~i~~~L~~~g~~~~~~~~~~~~  299 (534)
                      ..+..|.||||+|+..++.   .++|+..|+++|.+|..|+||||+|+..+ +.+++++|+++|++.......+..
T Consensus       403 ~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~t  478 (682)
T PHA02876        403 ALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQY  478 (682)
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence            9999999999999987763   67889999999999999999999999876 689999999999998765544433

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.9e-34  Score=299.93  Aligned_cols=256  Identities=13%  Similarity=0.130  Sum_probs=218.1

Q ss_pred             CCCCcHHHHHHH--cCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCC
Q 009452           21 KRDDTPLQSLVR--TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY   98 (534)
Q Consensus        21 ~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   98 (534)
                      ..+.++||.++.  .++.++|+.|++.|.+.      +.+|.+|.||||+|+..|+.+++++|+++|  .+.+.+|.+|.
T Consensus        35 ~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadv------n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d~~g~  106 (446)
T PHA02946         35 SGNYHILHAYCGIKGLDERFVEELLHRGYSP------NETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACDKQHK  106 (446)
T ss_pred             CCCChHHHHHHHhcCCCHHHHHHHHHCcCCC------CccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCC
Confidence            345799998764  55789999999999774      566899999999999999999999999987  45567899999


Q ss_pred             cHHHHHHHCC--CHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC
Q 009452           99 DAFHIAAKQG--CLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (534)
Q Consensus        99 t~Lh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  176 (534)
                      ||||+|+..+  ..+++++|+++++++....|..|.|||| |+..|+.+++++|++.|+++ ...|..|.||||.|+..+
T Consensus       107 TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~  184 (446)
T PHA02946        107 TPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSD  184 (446)
T ss_pred             CHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhc
Confidence            9999998866  4899999999999987767899999997 66779999999999999987 678899999999998754


Q ss_pred             --cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCC--CHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH---HHH
Q 009452          177 --HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ--SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV---QKL  249 (534)
Q Consensus       177 --~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~--~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~---~~l  249 (534)
                        +.+++++|++.|+++... |..|.||||+|+..+  +.+++++|+.  +.++|.+|..|+||||+|+..++.   .++
T Consensus       185 ~~~~~~v~~Ll~~Gadin~~-d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~  261 (446)
T PHA02946        185 NPKASTISWMMKLGISPSKP-DHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINK  261 (446)
T ss_pred             CCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHH
Confidence              578999999999987654 899999999999876  8899999985  578999999999999999998763   467


Q ss_pred             hhhcCCCh--------------------Hhh-hccCCcHHHHHHhcCchhHHHHHHhcCCC
Q 009452          250 LNINGVDK--------------------AVI-NKSRETALDTAEKTGHSEIGVILKEHGVP  289 (534)
Q Consensus       250 l~~~g~~~--------------------~~~-n~~g~T~l~~A~~~~~~~i~~~L~~~g~~  289 (534)
                      |+..|.+.                    +.. +..|.||||+|+..|+.+++++|+++|++
T Consensus       262 Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~  322 (446)
T PHA02946        262 LLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDII  322 (446)
T ss_pred             HHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCc
Confidence            77776542                    111 13467999999999999999999999864

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.7e-35  Score=309.16  Aligned_cols=254  Identities=25%  Similarity=0.284  Sum_probs=209.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCc
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (534)
                      +..+.||||.|++.|+.++|+.|++.|++.      +.++.+|.||||+||..|+.+++++|++.+.....    ..+.+
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv------n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~  103 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNV------NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLV  103 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchh
Confidence            456889999999999999999999999764      56689999999999999999999999997643222    46789


Q ss_pred             HHHHHHHCCCHHHHHHHHhh---------------------------------CccccccCCCC-CCcHHHHHHhcCCHH
Q 009452          100 AFHIAAKQGCLEVLKILMEA---------------------------------LPELLMTFDSS-NTTALHTASSQGHVE  145 (534)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~---------------------------------~~~~~~~~d~~-g~tpLh~A~~~g~~~  145 (534)
                      |+|.|+..|+.++++.|+..                                 ++++.. .|.. |.||||+|+..|+.+
T Consensus       104 ~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~-~~~~~g~tpLh~A~~~~~~~  182 (477)
T PHA02878        104 AIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINM-KDRHKGNTALHYATENKDQR  182 (477)
T ss_pred             hHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCc-cCCCCCCCHHHHHHhCCCHH
Confidence            99999999887766666543                                 443332 3555 999999999999999


Q ss_pred             HHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhC-CCHHHHHHHhhcCCc
Q 009452          146 VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG-QSIELVDELVKVEPV  224 (534)
Q Consensus       146 ~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-~~~~iv~~Ll~~~~~  224 (534)
                      ++++|+++|+++ ...|..|.||||.|+..|+.+++++|++.|+++... |..|+||||+|+.. ++.+++++|++ .+.
T Consensus       183 iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~-d~~g~TpLh~A~~~~~~~~iv~~Ll~-~ga  259 (477)
T PHA02878        183 LTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLE-HGV  259 (477)
T ss_pred             HHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhcCCHHHHHHHHH-cCC
Confidence            999999999887 567888999999999999999999999999887654 88899999999975 68899999998 567


Q ss_pred             cccccCC-CCCcHHHHHHHcCcHHHHhhhcCCChHhhhccCCcHHHHHHhcC-chhHHHHHHhcC
Q 009452          225 IINMVDA-KGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTG-HSEIGVILKEHG  287 (534)
Q Consensus       225 ~in~~d~-~G~T~Lh~Aa~~~~~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~-~~~i~~~L~~~g  287 (534)
                      ++|.++. .|.||||+|+......++|+..|+|++..|..|.||+++|+..+ ..++.+.|+.++
T Consensus       260 dvn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        260 DVNAKSYILGLTALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             CCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHH
Confidence            7888875 79999999965555678889999999999999999999998754 446666666543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=281.61  Aligned_cols=235  Identities=21%  Similarity=0.190  Sum_probs=204.6

Q ss_pred             cCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHH
Q 009452           33 TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEV  112 (534)
Q Consensus        33 ~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~i  112 (534)
                      .++.+++++|++.+++        ..|.+|.||||+|+..|+.++++.|++.+...  +.  .+|.||||+|+..|+.++
T Consensus         9 ~~~~~~~~~Lis~~a~--------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~--n~--~d~~TpLh~Aa~~g~~ei   76 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--------KADVHGHSALYYAIADNNVRLVCTLLNAGALK--NL--LENEFPLHQAATLEDTKI   76 (284)
T ss_pred             cCHHHHHHHHHhCCCC--------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC--cC--CCCCCHHHHHHHCCCHHH
Confidence            4678999999998753        45889999999999999999999999987533  22  247899999999999999


Q ss_pred             HHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCC-CcHHHHHHHcCcHHHHHHHHhcCCCC
Q 009452          113 LKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG-KTALHSAARNGHLEIVKALLSKEPGI  191 (534)
Q Consensus       113 v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~  191 (534)
                      +++|++.+++... .|..|+||||+|+..|+.+++++|+++|+++ ...+..| .||||+|+..|+.+++++|++++++.
T Consensus        77 V~lLL~~Gadvn~-~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~  154 (284)
T PHA02791         77 VKILLFSGMDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  154 (284)
T ss_pred             HHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence            9999999887654 5899999999999999999999999999988 4466666 58999999999999999999988754


Q ss_pred             cccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcH-HHHHHHcCcH--HHHhhhcCCChHhhhccCCcHH
Q 009452          192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA-LHIATRKGRV--QKLLNINGVDKAVINKSRETAL  268 (534)
Q Consensus       192 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~-Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l  268 (534)
                      ..  ...|.||||+|+.+|+.+++++|++ .+.++|.+|..|.|| ||+|+..++.  .++|+.+|++++.+|..| |++
T Consensus       155 ~d--~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l  230 (284)
T PHA02791        155 FD--LAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL  230 (284)
T ss_pred             cc--cccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC
Confidence            31  1358999999999999999999999 577899999999987 9999999986  689999999999999954 555


Q ss_pred             HHHHhcCchhHHHHHHhcCCCCC
Q 009452          269 DTAEKTGHSEIGVILKEHGVPCG  291 (534)
Q Consensus       269 ~~A~~~~~~~i~~~L~~~g~~~~  291 (534)
                            ++.|++++|+++.++..
T Consensus       231 ------~~~e~~~~ll~~~~~~~  247 (284)
T PHA02791        231 ------DDAEIAKMIIEKHVEYK  247 (284)
T ss_pred             ------CCHHHHHHHHHhhhhhc
Confidence                  78899999999888754

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.6e-34  Score=296.35  Aligned_cols=258  Identities=17%  Similarity=0.236  Sum_probs=216.7

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCC--HHHHHHHHHhCCcccccccc
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGY--VDMVREMIRYHDTSLAGIKA   94 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~--~~iv~~Ll~~~~~~~~~~~~   94 (534)
                      +.+|..|.||||+|++.|+.++|+.|++.|++.      +.+|..|.||||+|+..++  .++++.|++.+.... ...+
T Consensus        66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi------n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin-~~~d  138 (446)
T PHA02946         66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADP------NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN-NSVD  138 (446)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC------CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc-cccC
Confidence            457889999999999999999999999999774      5668999999999998764  899999999885432 1357


Q ss_pred             cCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcC--CHHHHHHHHhcCCCchhhhhcCCCcHHHHH
Q 009452           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG--HVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (534)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A  172 (534)
                      ..|.|||| |+..|+.++++.|++.+.+.. ..|..|+||||+|+..+  +.+++++|+++|+++ ..+|.+|.||||+|
T Consensus       139 ~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~A  215 (446)
T PHA02946        139 EEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIV  215 (446)
T ss_pred             CCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            88999998 667799999999999988765 45999999999998755  479999999999998 67889999999999


Q ss_pred             HHcC--cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCC-HHHHHHHhhcCCcc-------------------cccc-
Q 009452          173 ARNG--HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS-IELVDELVKVEPVI-------------------INMV-  229 (534)
Q Consensus       173 ~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~iv~~Ll~~~~~~-------------------in~~-  229 (534)
                      +..|  +.+++++|++ +.+++ .+|..|+||||+|++.++ .++++.|+..+...                   ++.. 
T Consensus       216 a~~~~~~~~iv~lLl~-gadin-~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g  293 (446)
T PHA02946        216 CSKTVKNVDIINLLLP-STDVN-KQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKG  293 (446)
T ss_pred             HHcCCCcHHHHHHHHc-CCCCC-CCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcC
Confidence            9986  8899999985 67665 458999999999999988 58999998853211                   2222 


Q ss_pred             CCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCC
Q 009452          230 DAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKS  293 (534)
Q Consensus       230 d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~  293 (534)
                      +..|.||||+|+..|+.  .++|+.+|+       .|+|||++|+..++.+++++|+.+|++....
T Consensus       294 ~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~  352 (446)
T PHA02946        294 KQYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV  352 (446)
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc
Confidence            24578999999999986  678888764       5799999999999999999999999997753

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=318.59  Aligned_cols=267  Identities=16%  Similarity=0.191  Sum_probs=228.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHH-----------------------------
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAA-----------------------------   70 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa-----------------------------   70 (534)
                      +..+.||||+|++.|+.|+|+.|++..++     ++...|..|.||||+|+                             
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~-----~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  112 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQQNPE-----LIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIIL  112 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHHhCcc-----cchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHH
Confidence            45689999999999999999999998763     34566888999999666                             


Q ss_pred             -----------------------------------------HcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCC
Q 009452           71 -----------------------------------------EYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGC  109 (534)
Q Consensus        71 -----------------------------------------~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~  109 (534)
                                                               ..|+.+++++|++.|  .+.+.+|..|.||||+|+..|+
T Consensus       113 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~G--advn~~d~~G~TpLh~Aa~~G~  190 (682)
T PHA02876        113 NKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGG--ADVNAKDIYCITPIHYAAERGN  190 (682)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCC--CCCCCCCCCCCCHHHHHHHCCC
Confidence                                                     557788999999987  4566788899999999999999


Q ss_pred             HHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCch----------------------------hhh
Q 009452          110 LEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA----------------------------TIA  161 (534)
Q Consensus       110 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~----------------------------~~~  161 (534)
                      .+++++|++++++... .+.+|.||||+|+..|+.+++++|++.+.+..                            ...
T Consensus       191 ~~iv~~LL~~Gad~n~-~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~  269 (682)
T PHA02876        191 AKMVNLLLSYGADVNI-IALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSI  269 (682)
T ss_pred             HHHHHHHHHCCCCcCc-cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            9999999999988654 48889999999999999998888777654321                            234


Q ss_pred             hcCCCcHHHHHHHcCcH-HHHHHHHhcCCCCcccCCCCCCcHHHHHHhCC-CHHHHHHHhhcCCccccccCCCCCcHHHH
Q 009452          162 RSNGKTALHSAARNGHL-EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ-SIELVDELVKVEPVIINMVDAKGNSALHI  239 (534)
Q Consensus       162 ~~~g~tpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~  239 (534)
                      +..|.||||+|+..|+. +++++|++.+.++... |..|+||||+|+..| ..++++.|+. .+.+++..|..|.||||+
T Consensus       270 d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~-d~~g~TpLh~Aa~~g~~~~~v~~Ll~-~gadin~~d~~g~TpLh~  347 (682)
T PHA02876        270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK-NIKGETPLYLMAKNGYDTENIRTLIM-LGADVNAADRLYITPLHQ  347 (682)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCCCHHHHHHHHH-cCCCCCCcccCCCcHHHH
Confidence            56799999999999986 6999999999887654 889999999999999 5899999998 677899999999999999


Q ss_pred             HHHcCc---HHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCC
Q 009452          240 ATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKP  296 (534)
Q Consensus       240 Aa~~~~---~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~  296 (534)
                      |+..++   +..+++..|++++.+|..|.||||+|+..++.+++++|+++|++.......
T Consensus       348 A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~  407 (682)
T PHA02876        348 ASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK  407 (682)
T ss_pred             HHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC
Confidence            998654   368889999999999999999999999999999999999999987654433

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5e-34  Score=296.93  Aligned_cols=241  Identities=17%  Similarity=0.244  Sum_probs=216.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHH
Q 009452           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (534)
                      ..++||.|++.|+.+++++|++.|.+++      ..+..|.||||+|+..|+.+++++|++.|..  .+..+..+.||||
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~~~t~L~   73 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN------FEIYDGISPIKLAMKFRDSEAIKLLMKHGAI--PDVKYPDIESELH   73 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC------ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCcccHHH
Confidence            5789999999999999999999998753      4467899999999999999999999998853  4556778999999


Q ss_pred             HHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHH
Q 009452          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK  182 (534)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~  182 (534)
                      .|+..|+.++++.|++.++......+.+|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|+.++++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999998877666788999999999999999999999999997 667889999999999999999999


Q ss_pred             HHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCC-cHHHHHHHcCcH--HHHhhhcCCChHh
Q 009452          183 ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN-SALHIATRKGRV--QKLLNINGVDKAV  259 (534)
Q Consensus       183 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~-T~Lh~Aa~~~~~--~~ll~~~g~~~~~  259 (534)
                      +|+++++++.. .|..|.||||+|+..|+.+++++|++ .+.+++..+..|. ||+|+|+..++.  .++|+.+|+|++.
T Consensus       153 ~Ll~~g~~~~~-~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        153 LLIDHKACLDI-EDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             HHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            99999998764 48999999999999999999999999 6777888888875 899999999986  7899999999987


Q ss_pred             h---hccCCcHHHHHHhc
Q 009452          260 I---NKSRETALDTAEKT  274 (534)
Q Consensus       260 ~---n~~g~T~l~~A~~~  274 (534)
                      .   +..+.||++.+...
T Consensus       231 ~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        231 MFMIEGEECTILDMICNM  248 (413)
T ss_pred             HhhcCCCchHHHHHHHhh
Confidence            6   56788999987653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.4e-34  Score=300.22  Aligned_cols=261  Identities=20%  Similarity=0.248  Sum_probs=231.9

Q ss_pred             HHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcC---CHHHHHHHHHhCCcccccccccCCCcHHHHH
Q 009452           28 QSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG---YVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (534)
Q Consensus        28 h~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (534)
                      ..+...++.++|+.|++.|.+.      +..+..|.||||+|+..|   +.++++.|++.|  .+.+.++..|.||||+|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~v------n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G--adin~~~~~g~TpLh~A   90 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADV------NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG--ADVNAPERCGFTPLHLY   90 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCc------ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCC--CCCCCCCCCCCCHHHHH
Confidence            4567789999999999999764      556889999999999999   999999999988  45667788999999999


Q ss_pred             HHCC-CHHHHHHHHhhCccccccCCCCCCcHHHHHH--hcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC--cHH
Q 009452          105 AKQG-CLEVLKILMEALPELLMTFDSSNTTALHTAS--SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG--HLE  179 (534)
Q Consensus       105 a~~g-~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g--~~~  179 (534)
                      +..| +.+++++|+++++++.. .|..|.||||+|+  ..++.+++++|+++|+++ ...|..|.||||+|+..+  +.+
T Consensus        91 ~~~~~~~~iv~lLl~~ga~in~-~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~  168 (471)
T PHA03095         91 LYNATTLDVIKLLIKAGADVNA-KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVE  168 (471)
T ss_pred             HHcCCcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHH
Confidence            9999 59999999999998654 4899999999999  567899999999999997 667899999999998866  689


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHhC--CCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH----HHHhhhc
Q 009452          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKG--QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV----QKLLNIN  253 (534)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~----~~ll~~~  253 (534)
                      ++++|+++|++.... |..|+||||.|+..  ++.++++.|++ .+.+++.+|..|+||||+|+..++.    ...++..
T Consensus       169 iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~-~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~  246 (471)
T PHA03095        169 LLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIR-AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA  246 (471)
T ss_pred             HHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHc
Confidence            999999999998776 89999999999874  78899999998 6788999999999999999998863    5677889


Q ss_pred             CCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCCccch
Q 009452          254 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANS  300 (534)
Q Consensus       254 g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~  300 (534)
                      |+++|.+|..|+||||+|+..|+.+++++|+++|+++......+..+
T Consensus       247 g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tp  293 (471)
T PHA03095        247 GISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTP  293 (471)
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            99999999999999999999999999999999999987655544443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=297.68  Aligned_cols=250  Identities=28%  Similarity=0.375  Sum_probs=222.9

Q ss_pred             HhhhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhC---Ccccc
Q 009452           14 MKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYH---DTSLA   90 (534)
Q Consensus        14 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~---~~~~~   90 (534)
                      ...++.|+.+.||||.|++.++.|..+.|++.++++      .+.|.+|++|+|.|+++|..++.+..+...   .....
T Consensus       145 ~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~------~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i  218 (929)
T KOG0510|consen  145 ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADP------CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI  218 (929)
T ss_pred             CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCC------CcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc
Confidence            456778899999999999999999889999999875      466899999999999999999999999832   23456


Q ss_pred             cccccCCCcHHHHHHHCCCHHHHHHHHhhCcc--------------ccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 009452           91 GIKARNGYDAFHIAAKQGCLEVLKILMEALPE--------------LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST  156 (534)
Q Consensus        91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~--------------~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  156 (534)
                      +..+..|.||||.|+..|++++++.+++.+..              +.+..|.+|.||||+||+.|+.+.++.|+..|++
T Consensus       219 n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~  298 (929)
T KOG0510|consen  219 NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS  298 (929)
T ss_pred             ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc
Confidence            77788999999999999999999999997653              2445689999999999999999999999999999


Q ss_pred             chhhhhcCCCcHHHHHHHcCcHHHHHHHHh-cCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCcccc--ccCCCC
Q 009452          157 LATIARSNGKTALHSAARNGHLEIVKALLS-KEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIIN--MVDAKG  233 (534)
Q Consensus       157 ~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in--~~d~~G  233 (534)
                      + ..++.++.||||.||..|+++.|+.|++ .+.-+.+..|-.|.||||+|+++|+..+++.|++++....+  ..|.+|
T Consensus       299 I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg  377 (929)
T KOG0510|consen  299 I-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDG  377 (929)
T ss_pred             c-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCC
Confidence            8 6788999999999999999999999999 55556667789999999999999999999999996665555  569999


Q ss_pred             CcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHH
Q 009452          234 NSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDT  270 (534)
Q Consensus       234 ~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~  270 (534)
                      +||||+|+..|+.  ...|+.+|+++..+|..|.+++|+
T Consensus       378 ~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  378 NTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             chhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            9999999999986  789999999999999999999996

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-34  Score=245.73  Aligned_cols=209  Identities=28%  Similarity=0.378  Sum_probs=137.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHH
Q 009452           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (534)
                      +.++.+.+++......|+.+++..+.    .+....|.+|.||||+||..|+.+++.+|++ ..+...+.+|..|+||||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~k----SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlh   77 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPK----SLNARDDQDGRTPLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLH   77 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChh----hhhccccccCCceeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhh
Confidence            45666777777777777777765431    2233334477777777777777777777776 334445556667777777


Q ss_pred             HHHHCCCHHHHHHHHhh-CccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHH
Q 009452          103 IAAKQGCLEVLKILMEA-LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV  181 (534)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv  181 (534)
                      .||..|+.++|+.|+.+ +++++. .+..|+||||||+..|..+++++|+++|+.+ .++|..|.||||.|+.-|..+++
T Consensus        78 ia~s~g~~evVk~Ll~r~~advna-~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvi  155 (226)
T KOG4412|consen   78 IAASNGNDEVVKELLNRSGADVNA-TTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVI  155 (226)
T ss_pred             hhhhcCcHHHHHHHhcCCCCCcce-ecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhH
Confidence            77777777777777776 555433 3666777777777777777777777777665 66677777777777777777777


Q ss_pred             HHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHH
Q 009452          182 KALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIAT  241 (534)
Q Consensus       182 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa  241 (534)
                      ++|+..++.++. +|+.|+||||.|...|+.++...|++ .+++++..|++| ||+..|+
T Consensus       156 e~Li~~~a~~n~-qDk~G~TpL~~al~e~~~d~a~lLV~-~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  156 EYLISQGAPLNT-QDKYGFTPLHHALAEGHPDVAVLLVR-AGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             HHHHhcCCCCCc-ccccCccHHHHHHhccCchHHHHHHH-hccceeeccccC-chHHHHH
Confidence            777777655443 36677777777766666666666666 345566666666 6665554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-34  Score=245.46  Aligned_cols=208  Identities=31%  Similarity=0.355  Sum_probs=182.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      +.++.+.+++.....-++.+++..........|.+|+||||+||..|+.+++++|+....-..+..|..||||||.||+.
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            56788888988888889999987654555555669999999999999999999999744334455599999999999999


Q ss_pred             CCHHHHHHHHhc-CCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          142 GHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       142 g~~~~v~~Ll~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      |+.++|+.|+.+ |+++ +..+..|.||||+|+..|..+|+++|++.++.+.. .|..|+||||-|+.-|+.+++++|+.
T Consensus        83 g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~-kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRI-KDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             CcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcc-cccccCchhHHHHhccchhhHHHHHh
Confidence            999999999999 8887 67788999999999999999999999999977654 59999999999999999999999999


Q ss_pred             cCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHh
Q 009452          221 VEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEK  273 (534)
Q Consensus       221 ~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~  273 (534)
                       .++.+|.+|+.|+||||.|...++.  ..+|...|++.+..|++| ||+.+|..
T Consensus       161 -~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  161 -QGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             -cCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence             5588999999999999999766664  689999999999999998 99887753

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=292.23  Aligned_cols=256  Identities=19%  Similarity=0.210  Sum_probs=219.4

Q ss_pred             CCCCcHHHHHHHcC--CHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcC------CHHHHHHHHHhCCcccccc
Q 009452           21 KRDDTPLQSLVRTG--SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG------YVDMVREMIRYHDTSLAGI   92 (534)
Q Consensus        21 ~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g------~~~iv~~Ll~~~~~~~~~~   92 (534)
                      .+|.||||.++..+  +.++|+.|++.|++.+.      .+ .+.||||.|+..+      +.+++++|++.|+  +.+.
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~------~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Ga--din~  103 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNY------KG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGA--DINL  103 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccC------CC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCC--CCCC
Confidence            45889998766543  78999999999987542      23 5789999998764      4789999999884  4677


Q ss_pred             cccCCCcHHHHHHHC---CCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc--CCHHHHHHHHhcCCCchhhhhcCCCc
Q 009452           93 KARNGYDAFHIAAKQ---GCLEVLKILMEALPELLMTFDSSNTTALHTASSQ--GHVEVVKFLLEKGSTLATIARSNGKT  167 (534)
Q Consensus        93 ~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~t  167 (534)
                      ++..|.||||.|+..   |+.+++++|+++|+++....|..|+||||+|+..  ++.+++++|+++|+++....+..|.|
T Consensus       104 ~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~t  183 (494)
T PHA02989        104 KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLT  183 (494)
T ss_pred             CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCC
Confidence            889999999988765   6899999999999988556699999999998764  68999999999999985546788999


Q ss_pred             HHHHHHHcC----cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhC------CCHHHHHHHhhcCCccccccCCCCCcHH
Q 009452          168 ALHSAARNG----HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG------QSIELVDELVKVEPVIINMVDAKGNSAL  237 (534)
Q Consensus       168 pLh~A~~~g----~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~------~~~~iv~~Ll~~~~~~in~~d~~G~T~L  237 (534)
                      |||.|+..+    +.+++++|+++|.++... |..|.|+||.++..      +..+++++|++  +.++|.+|..|+|||
T Consensus       184 pL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~-~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL  260 (494)
T PHA02989        184 PMNIYLRNDIDVISIKVIKYLIKKGVNIETN-NNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPL  260 (494)
T ss_pred             hHHHHHhcccccccHHHHHHHHhCCCCcccc-CCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHH
Confidence            999998754    899999999999987654 67899999987754      45788888776  478999999999999


Q ss_pred             HHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCC
Q 009452          238 HIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV  288 (534)
Q Consensus       238 h~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~  288 (534)
                      |+|+..++.  .++|+..|+|++.+|..|.|||++|+..++.++++.|++.++
T Consensus       261 ~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        261 LISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             HHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999876  689999999999999999999999999999999999998764

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=285.99  Aligned_cols=226  Identities=24%  Similarity=0.296  Sum_probs=206.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      .+++||.|+..|+.+++++|++.|.  +.+..+.+|.||||+|+..|+.+++++|+++++.... .+..+.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~--~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGI--NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV-KYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCcccHHHHHHHC
Confidence            4789999999999999999999874  4556778899999999999999999999999886543 367899999999999


Q ss_pred             CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                      |+.+++++|++.|+......+.+|.||||+|+..|+.+++++|+++|+++... +..|.||||.|+..|+.+++++|++ 
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~-~~~g~tpLh~A~~~~~~~~v~~Ll~-  156 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELLID-  156 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh-
Confidence            99999999999998876667788999999999999999999999999987654 7899999999999999999999999 


Q ss_pred             CCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCC-cHHHHHHhcCchhHHHHHHhcCCCCCC
Q 009452          222 EPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRE-TALDTAEKTGHSEIGVILKEHGVPCGK  292 (534)
Q Consensus       222 ~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~-T~l~~A~~~~~~~i~~~L~~~g~~~~~  292 (534)
                      .+.+++.+|..|+||||+|+..|+.  .++|+..|++++..+..|. ||+++|+..++.+++++|+++|+++..
T Consensus       157 ~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        157 HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            6677899999999999999999986  6899999999999998875 889999999999999999999998753

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.2e-32  Score=265.60  Aligned_cols=219  Identities=16%  Similarity=0.192  Sum_probs=187.5

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      ..+|.+|.||||+|+..|+.++++.|++.+++.+      .  .+|.||||+|+..|+.++++.|++.+  .+.+.+|..
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n------~--~d~~TpLh~Aa~~g~~eiV~lLL~~G--advn~~d~~   93 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALKN------L--LENEFPLHQAATLEDTKIVKILLFSG--MDDSQFDDK   93 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc------C--CCCCCHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCC
Confidence            3578999999999999999999999999987643      1  34789999999999999999999987  445668899


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCC-CcHHHHHHhcCCHHHHHHHHhcCCCchhhhh-cCCCcHHHHHHH
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN-TTALHTASSQGHVEVVKFLLEKGSTLATIAR-SNGKTALHSAAR  174 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpLh~A~~  174 (534)
                      |+||||+|+..|+.++++.|+++++++... +..| .||||+|+..|+.+++++|++++++.   .| ..|.||||+|+.
T Consensus        94 G~TpLh~Aa~~g~~eivk~Ll~~gadin~~-~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~  169 (284)
T PHA02791         94 GNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIK  169 (284)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCccHHHHHHH
Confidence            999999999999999999999999987554 6666 59999999999999999999997654   23 358999999999


Q ss_pred             cCcHHHHHHHHhcCCCCcccCCCCCCcH-HHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhc
Q 009452          175 NGHLEIVKALLSKEPGIVLRNDKKGQTA-LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNIN  253 (534)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~  253 (534)
                      +|+.+++++|+++++++... |..|.|| ||.|+.+|+.+++++|++ .+.++|.+|.+| |+|+.|    .+.++|+++
T Consensus       170 ~g~~eiv~lLL~~gAd~n~~-d~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in~~~~~~-~~l~~~----e~~~~ll~~  242 (284)
T PHA02791        170 NGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDLEMLQALFK-YDINIYSVNLEN-VLLDDA----EIAKMIIEK  242 (284)
T ss_pred             cCCHHHHHHHHHCCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCcccC-ccCCCH----HHHHHHHHh
Confidence            99999999999999987654 7788877 999999999999999998 678899999955 777333    246677766


Q ss_pred             CCC
Q 009452          254 GVD  256 (534)
Q Consensus       254 g~~  256 (534)
                      -++
T Consensus       243 ~~~  245 (284)
T PHA02791        243 HVE  245 (284)
T ss_pred             hhh
Confidence            544

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=290.06  Aligned_cols=255  Identities=23%  Similarity=0.257  Sum_probs=227.0

Q ss_pred             CCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHH-----HHHCC
Q 009452           34 GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHI-----AAKQG  108 (534)
Q Consensus        34 g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~-----Aa~~g  108 (534)
                      ...+.++++++.+.      ..+..+..+.||||+|+..|+.++|++|++.|.  ..+..+..|.||||+     |+..|
T Consensus        13 ~~~~~~~~~~~~~~------~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~--~~~~~~~~~~t~L~~~~~~~a~~~~   84 (480)
T PHA03100         13 IKVKNIKYIIMEDD------LNDYSYKKPVLPLYLAKEARNIDVVKILLDNGA--DINSSTKNNSTPLHYLSNIKYNLTD   84 (480)
T ss_pred             HHHHHHHHHHhcCc------cchhhhcccchhhhhhhccCCHHHHHHHHHcCC--CCCCccccCcCHHHHHHHHHHHhhc
Confidence            34577888887652      234557889999999999999999999999874  455677889999999     99999


Q ss_pred             CHHHHHHHHhhCccccccCCCCCCcHHHHHH--hcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC--cHHHHHHH
Q 009452          109 CLEVLKILMEALPELLMTFDSSNTTALHTAS--SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG--HLEIVKAL  184 (534)
Q Consensus       109 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g--~~~iv~~L  184 (534)
                      +.++++.|++.++++ +..|..|.||||+|+  ..|+.+++++|+++|+++ ...+..|.||||.|+..|  +.+++++|
T Consensus        85 ~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~L  162 (480)
T PHA03100         85 VKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLL  162 (480)
T ss_pred             hHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHH
Confidence            999999999999988 566999999999999  999999999999999987 667889999999999999  99999999


Q ss_pred             HhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCC------CcHHHHHHHcCc--H--HHHhhhcC
Q 009452          185 LSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG------NSALHIATRKGR--V--QKLLNING  254 (534)
Q Consensus       185 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G------~T~Lh~Aa~~~~--~--~~ll~~~g  254 (534)
                      +++|+++... |..|.||||.|+..|+.+++++|++ .+.+++..+..|      .||||.|+..++  .  ..+|+..|
T Consensus       163 l~~g~din~~-d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g  240 (480)
T PHA03100        163 IDKGVDINAK-NRYGYTPLHIAVEKGNIDVIKFLLD-NGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG  240 (480)
T ss_pred             HHCCCCcccc-cCCCCCHHHHHHHhCCHHHHHHHHH-cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC
Confidence            9999997655 7799999999999999999999999 677789999999      999999999998  4  68899999


Q ss_pred             CChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCCccch
Q 009452          255 VDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANS  300 (534)
Q Consensus       255 ~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~  300 (534)
                      ++++.+|..|.||||+|+..|+.+++++|+++|+++......+..+
T Consensus       241 ~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tp  286 (480)
T PHA03100        241 VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTP  286 (480)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Confidence            9999999999999999999999999999999999876554444333

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.4e-32  Score=285.17  Aligned_cols=258  Identities=20%  Similarity=0.193  Sum_probs=222.1

Q ss_pred             CCCCcHHHHHHH--cCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHc-----CCHHHHHHHHHhCCccccccc
Q 009452           21 KRDDTPLQSLVR--TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY-----GYVDMVREMIRYHDTSLAGIK   93 (534)
Q Consensus        21 ~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~-----g~~~iv~~Ll~~~~~~~~~~~   93 (534)
                      ..+.|+++.+..  .++.++|+.|++.|++.      +..+..|.||||.|+..     ++.+++++|++.|  .+.+.+
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv------n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G--adiN~~  105 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANV------NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG--ADINKK  105 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCC------CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC--CCCCCC
Confidence            446677765554  45899999999999874      56689999999999865     6789999999987  456778


Q ss_pred             ccCCCcHHHHHHHCC---CHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC---HHHHHHHHhcCCCchhhhhcCCCc
Q 009452           94 ARNGYDAFHIAAKQG---CLEVLKILMEALPELLMTFDSSNTTALHTASSQGH---VEVVKFLLEKGSTLATIARSNGKT  167 (534)
Q Consensus        94 ~~~g~t~Lh~Aa~~g---~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~t  167 (534)
                      +..|.||||+|+..+   +.+++++|+++|++... .|.+|.||||+|+..|+   .+++++|+++|+++....+..|.|
T Consensus       106 d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t  184 (489)
T PHA02798        106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTL-LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYD  184 (489)
T ss_pred             CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc-cCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCc
Confidence            999999999999876   78999999999998754 59999999999999998   999999999999985555668999


Q ss_pred             HHHHHHHc----CcHHHHHHHHhcCCCCcccCCCCCCcHHH-------HHHhCCCHHHHHHHhhcCCccccccCCCCCcH
Q 009452          168 ALHSAARN----GHLEIVKALLSKEPGIVLRNDKKGQTALH-------MAVKGQSIELVDELVKVEPVIINMVDAKGNSA  236 (534)
Q Consensus       168 pLh~A~~~----g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh-------~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~  236 (534)
                      |||.++..    ++.+++++|+++|.++... +..|.++++       .+...++.+++++|+.  +.++|.+|..|+||
T Consensus       185 ~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~-~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--~~dvN~~d~~G~TP  261 (489)
T PHA02798        185 TLHCYFKYNIDRIDADILKLFVDNGFIINKE-NKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--YIDINQVDELGFNP  261 (489)
T ss_pred             HHHHHHHhccccCCHHHHHHHHHCCCCcccC-CccccchHHHHHHHHHhhcccchHHHHHHHHh--cCCCCCcCcCCccH
Confidence            99998764    5899999999999987654 677888876       2445677889988876  37899999999999


Q ss_pred             HHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCC
Q 009452          237 LHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  290 (534)
Q Consensus       237 Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~  290 (534)
                      ||+|+..++.  .++|++.|+|++.+|..|+|||+.|+..++.++++.|++.|++.
T Consensus       262 L~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        262 LYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            9999999986  68899999999999999999999999999999999999988765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-31  Score=279.43  Aligned_cols=263  Identities=22%  Similarity=0.237  Sum_probs=213.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHH
Q 009452           27 LQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAK  106 (534)
Q Consensus        27 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~  106 (534)
                      |..++...+.+.+...++.-...  ....+..+..+.||||+|+..|+.++|++|++.|  .+.+.++..|.||||+||.
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~g--advn~~d~~g~TpLh~A~~   79 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHT--ENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRG--HNVNQPDHRDLTPLHIICK   79 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhh--hhhcCcccccCcchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHH
Confidence            45566666765555555542111  1223445667899999999999999999999987  4566789999999999999


Q ss_pred             CCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHH---------------------------------HHHHhc
Q 009452          107 QGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVV---------------------------------KFLLEK  153 (534)
Q Consensus       107 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v---------------------------------~~Ll~~  153 (534)
                      .|+.++++.|++.+.....   ..+.+|++.|+..|+.+++                                 ++|+++
T Consensus        80 ~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~  156 (477)
T PHA02878         80 EPNKLGMKEMIRSINKCSV---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY  156 (477)
T ss_pred             CccHhHHHHHHHHHhcccc---ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHc
Confidence            9999999999998654322   4678899999988876554                                 455555


Q ss_pred             CCCchhhhhcC-CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCC
Q 009452          154 GSTLATIARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK  232 (534)
Q Consensus       154 ~~~~~~~~~~~-g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~  232 (534)
                      |+++ ...+.. |.||||+|+..|+.+++++|++.|+++.. .|..|.||||.|+..++.+++++|++ .+.+++.+|..
T Consensus       157 gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~  233 (477)
T PHA02878        157 GADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI-PDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKC  233 (477)
T ss_pred             CCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCC
Confidence            6655 345556 99999999999999999999999998765 48999999999999999999999998 67789999999


Q ss_pred             CCcHHHHHHHc-Cc--HHHHhhhcCCChHhhhc-cCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCCccchH
Q 009452          233 GNSALHIATRK-GR--VQKLLNINGVDKAVINK-SRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSA  301 (534)
Q Consensus       233 G~T~Lh~Aa~~-~~--~~~ll~~~g~~~~~~n~-~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~  301 (534)
                      |+||||+|+.. ++  +.++|+.+|++++..+. .|.||||+|  .++.+++++|+++|+++......+..+.
T Consensus       234 g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL  304 (477)
T PHA02878        234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPL  304 (477)
T ss_pred             CCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            99999999975 44  36899999999999986 799999999  5778999999999999876655544443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.8e-31  Score=282.74  Aligned_cols=268  Identities=18%  Similarity=0.151  Sum_probs=214.3

Q ss_pred             CCCcHHHHH-----HHcCCHHHHHHHHHhc-CChhHHHHHHhc-CCCCCcHHHHHHH--cCCHHHHHHHHHhCCcccccc
Q 009452           22 RDDTPLQSL-----VRTGSVELVLDMISSY-GDMELREMLSKM-NQSGETALYVAAE--YGYVDMVREMIRYHDTSLAGI   92 (534)
Q Consensus        22 ~g~t~Lh~A-----~~~g~~~~v~~Ll~~~-~~~~~~~~l~~~-n~~g~T~Lh~Aa~--~g~~~iv~~Ll~~~~~~~~~~   92 (534)
                      .+..+++..     .+.++.++|++|++.| .+.      +.. |..|.||||.|+.  .++.+++++|++.|  .+.+.
T Consensus       136 ~d~~~~~~y~~al~~~~v~leiVk~LLe~G~ADI------N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~G--ADVN~  207 (764)
T PHA02716        136 GDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVNL------NYVCKKTGYGILHAYLGNMYVDIDILEWLCNNG--VNVNL  207 (764)
T ss_pred             ccchHHHHHHhhhcccCCCHHHHHHHHHCCCCCc------ccccCCCCCcHHHHHHHhccCCHHHHHHHHHcC--CCCCC
Confidence            355555544     4678999999999998 653      444 7889999999865  46789999999987  45677


Q ss_pred             cccCCCcHHHHHHHCCC--HHHHHHHHhhCccccccCCCCCCcHHHHH--------------------------------
Q 009452           93 KARNGYDAFHIAAKQGC--LEVLKILMEALPELLMTFDSSNTTALHTA--------------------------------  138 (534)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~--~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A--------------------------------  138 (534)
                      +|..|.||||+|+..|+  .+++++|+++|++... +|..|+||||+|                                
T Consensus       208 kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~-kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~  286 (764)
T PHA02716        208 QNNHLITPLHTYLITGNVCASVIKKIIELGGDMDM-KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILH  286 (764)
T ss_pred             CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhH
Confidence            89999999999999995  5999999999998654 589999999975                                


Q ss_pred             -----HhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHH--cCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHh---
Q 009452          139 -----SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR--NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK---  208 (534)
Q Consensus       139 -----~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~---  208 (534)
                           +..|+.+++++|+++|+++ ..+|.+|+||||+|+.  .++.+++++|++.|+++.. +|..|+||||+|+.   
T Consensus       287 ~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~-kD~~G~TPLH~A~~~la  364 (764)
T PHA02716        287 SYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE-PDNIGNTVLHTYLSMLS  364 (764)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc-CCCCCCCHHHHHHHhhh
Confidence                 3457889999999999997 6789999999999864  5689999999999998765 58999999999875   


Q ss_pred             -----------CCCHHHHHHHhhcCCccccccCCCCCcHHHHHH---H-cCc--HHHHhhh-------------------
Q 009452          209 -----------GQSIELVDELVKVEPVIINMVDAKGNSALHIAT---R-KGR--VQKLLNI-------------------  252 (534)
Q Consensus       209 -----------~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa---~-~~~--~~~ll~~-------------------  252 (534)
                                 .++.+++++|++ .+.+++.+|..|.||||.++   . .++  +.++|+.                   
T Consensus       365 v~~~ld~~~~~~~~~eVVklLL~-~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~  443 (764)
T PHA02716        365 VVNILDPETDNDIRLDVIQCLIS-LGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRV  443 (764)
T ss_pred             hhccccccccccChHHHHHHHHH-CCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhcc
Confidence                       378999999999 67889999999999999432   1 111  1222222                   


Q ss_pred             ------------------------------------------cCCChHhhhccCCcHHHHHHhcCchh-----HHHHHHh
Q 009452          253 ------------------------------------------NGVDKAVINKSRETALDTAEKTGHSE-----IGVILKE  285 (534)
Q Consensus       253 ------------------------------------------~g~~~~~~n~~g~T~l~~A~~~~~~~-----i~~~L~~  285 (534)
                                                                .+.+++..|..|.||||+|+..|+.+     ++++|++
T Consensus       444 d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~  523 (764)
T PHA02716        444 DDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS  523 (764)
T ss_pred             CcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh
Confidence                                                      22344556788999999999998874     4599999


Q ss_pred             cCCCCCCCCCCccchH
Q 009452          286 HGVPCGKSIKPQANSA  301 (534)
Q Consensus       286 ~g~~~~~~~~~~~~~~  301 (534)
                      .|++.......+..+.
T Consensus       524 ~GADIN~~d~~G~TPL  539 (764)
T PHA02716        524 IQYNINIPTKNGVTPL  539 (764)
T ss_pred             CCCCCcccCCCCCCHH
Confidence            9999887665555443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.98  E-value=2.8e-30  Score=271.76  Aligned_cols=269  Identities=18%  Similarity=0.183  Sum_probs=190.0

Q ss_pred             cCCCCCCcHHHHHHHcC---CHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcC--CHHHHHHHHHhCCcccccc
Q 009452           18 LTAKRDDTPLQSLVRTG---SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG--YVDMVREMIRYHDTSLAGI   92 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g--~~~iv~~Ll~~~~~~~~~~   92 (534)
                      ..|..|.||||+|+..|   +.++|+.|++.|++.      +.+|..|.||||+|+..|  +.++|++|++.+.+...+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi------n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER------LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC------cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            46678999999999997   599999999999875      466899999999999977  7999999999865332222


Q ss_pred             ccc-----------------------------------------CCCcHHHHHHHCCCHHHHHHHHhhCcccc------c
Q 009452           93 KAR-----------------------------------------NGYDAFHIAAKQGCLEVLKILMEALPELL------M  125 (534)
Q Consensus        93 ~~~-----------------------------------------~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~------~  125 (534)
                      .+.                                         .|.+|+++|...++.++|++|++++++..      .
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            222                                         45566666666667777777777666552      0


Q ss_pred             cCCCCCC-cHHHHH------HhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHH--HHHcCcHHHHHHHHh----------
Q 009452          126 TFDSSNT-TALHTA------SSQGHVEVVKFLLEKGSTLATIARSNGKTALHS--AARNGHLEIVKALLS----------  186 (534)
Q Consensus       126 ~~d~~g~-tpLh~A------~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~--A~~~g~~~iv~~Ll~----------  186 (534)
                      ..|..+. |.||++      ...++.|++++|+++|+++ +.+|.+|.||||+  |...|+.|++++|++          
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~  268 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDD  268 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccc
Confidence            0122222 222221      2233445555555555544 3455566666663  333445555555555          


Q ss_pred             --------------------------------------------------------------------------------
Q 009452          187 --------------------------------------------------------------------------------  186 (534)
Q Consensus       187 --------------------------------------------------------------------------------  186 (534)
                                                                                                      
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~  348 (672)
T PHA02730        269 ISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLI  348 (672)
T ss_pred             ccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHH
Confidence                                                                                            


Q ss_pred             -------------------cCCCCcccCCCCCCcHHHHHHhCCC----HHHHHHHhhcCC-ccccccCCCCCcHHHH---
Q 009452          187 -------------------KEPGIVLRNDKKGQTALHMAVKGQS----IELVDELVKVEP-VIINMVDAKGNSALHI---  239 (534)
Q Consensus       187 -------------------~~~~~~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~-~~in~~d~~G~T~Lh~---  239 (534)
                                         +|++++.  +..|.||||.|+..++    .+++++|+++++ .++|.+|.+|.||||.   
T Consensus       349 ~Y~~~~~~v~ieIvelLIs~GAdIN~--k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~  426 (672)
T PHA02730        349 NYLHYGDMVSIPILRCMLDNGATMDK--TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLIL  426 (672)
T ss_pred             HHHhcCCcCcHHHHHHHHHCCCCCCc--CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHH
Confidence                               3333332  2578999999988775    899999999654 3789999999999994   


Q ss_pred             HHHcCc-----------HHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCC
Q 009452          240 ATRKGR-----------VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK  295 (534)
Q Consensus       240 Aa~~~~-----------~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~  295 (534)
                      |...+.           +..+|+.+|+|+|.+|..|.|||++|+..++.+++++|+++|++......
T Consensus       427 a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~  493 (672)
T PHA02730        427 SRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR  493 (672)
T ss_pred             HHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence            332221           25899999999999999999999999999999999999999998765543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.1e-30  Score=253.08  Aligned_cols=194  Identities=26%  Similarity=0.400  Sum_probs=167.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhc-CChhHHHH--HHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSY-GDMELREM--LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~~--l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      ..+|-|||-.|+++|+.++|++|+++. ++++....  .+..+-+|-+||-.|+..||.++|+.|++++  ..++.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc--Ccccccccc
Confidence            467889999999999999999999953 33321111  2233456889999999999999999999988  445555556


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  176 (534)
                      ..|||-.||..|+.+++++|+++++++.- .|..|.|+||.||..||.+++++|++.|+++ +.++..|.|+||.|++.|
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~I-anrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPEI-ANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESG  194 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCcc-cccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcc
Confidence            67999999999999999999999988754 4999999999999999999999999999998 668899999999999999


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHh
Q 009452          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV  219 (534)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  219 (534)
                      +.|++++|+.++..+.  .|..|.|||..|...|+.++|++|+
T Consensus       195 ~vdivq~Ll~~ga~i~--~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKID--VDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             cHHHHHHHHhCCceee--ecCCCCchHHHHhhhcchHHHHHHh
Confidence            9999999999998764  4788999999999999999999988

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=274.06  Aligned_cols=268  Identities=19%  Similarity=0.121  Sum_probs=187.9

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCC---------------------
Q 009452           19 TAKRDDTPLQSLVRT---GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGY---------------------   74 (534)
Q Consensus        19 ~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~---------------------   74 (534)
                      .|.+|.||||+|+..   |+.++|+.|++.|++.      +..+..|.||||+|+..|+                     
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v------~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~  101 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP------LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN  101 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc------cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC
Confidence            478899999997665   8899999999999864      3457778888887777665                     


Q ss_pred             --------------HHHHHHHHHhCCcccccccccCCCcHHHHHH--HCCCHHHHHHHHhhCcccccc--CCCCC-----
Q 009452           75 --------------VDMVREMIRYHDTSLAGIKARNGYDAFHIAA--KQGCLEVLKILMEALPELLMT--FDSSN-----  131 (534)
Q Consensus        75 --------------~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~~~~~~~~--~d~~g-----  131 (534)
                                    .++|++|++.|  .+.+.+|.+|.||||.|+  ..|+.+++++|+++|++....  .+..|     
T Consensus       102 ~~~~~~~~a~~~~~~e~vk~Ll~~G--adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        102 DFNIFSYMKSKNVDVDLIKVLVEHG--FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             CcchHHHHHhhcCCHHHHHHHHHcC--CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccc
Confidence                          34444444444  344567778999998543  467899999999988876422  12233     


Q ss_pred             ------CcHHHHHHh-----------cCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcH--HHHHHHHhcCCCCc
Q 009452          132 ------TTALHTASS-----------QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL--EIVKALLSKEPGIV  192 (534)
Q Consensus       132 ------~tpLh~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~--~iv~~Ll~~~~~~~  192 (534)
                            .||||+|+.           .++.+++++|+++|+++ +..|.+|.||||+|+.+|+.  ++|++|++ |.+..
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence                  599999875           45789999999999887 66788899999999988874  68888865 54332


Q ss_pred             c---cCCCCCCcHHHHHH--------------------------------------------------------------
Q 009452          193 L---RNDKKGQTALHMAV--------------------------------------------------------------  207 (534)
Q Consensus       193 ~---~~d~~g~t~Lh~A~--------------------------------------------------------------  207 (534)
                      .   ..|..|.+++|+|+                                                              
T Consensus       258 ~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (661)
T PHA02917        258 AYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIE  337 (661)
T ss_pred             ccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHH
Confidence            1   11222333333332                                                              


Q ss_pred             --hCCC--HHHHHHHhhcC-----------------------------CccccccCCCCCcHHHHHHHcCc---------
Q 009452          208 --KGQS--IELVDELVKVE-----------------------------PVIINMVDAKGNSALHIATRKGR---------  245 (534)
Q Consensus       208 --~~~~--~~iv~~Ll~~~-----------------------------~~~in~~d~~G~T~Lh~Aa~~~~---------  245 (534)
                        ..|.  .+++++|++.+                             +.+++.+|.+|.||||.|++.++         
T Consensus       338 ~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~  417 (661)
T PHA02917        338 YMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYT  417 (661)
T ss_pred             HHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhh
Confidence              1222  23556665521                             22234455678999998875432         


Q ss_pred             ----------------HHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCC
Q 009452          246 ----------------VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKP  296 (534)
Q Consensus       246 ----------------~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~  296 (534)
                                      ...+|+.+|+|+|.+|..|.||||+|+..++.+++++|+++|++.......
T Consensus       418 ~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~  484 (661)
T PHA02917        418 YKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNN  484 (661)
T ss_pred             hhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC
Confidence                            137788899999999999999999999999999999999999887655443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=269.81  Aligned_cols=255  Identities=15%  Similarity=0.152  Sum_probs=213.1

Q ss_pred             cCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHc--CCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCC--
Q 009452           33 TGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY--GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQG--  108 (534)
Q Consensus        33 ~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~--g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g--  108 (534)
                      ..+.++|+.|++.|.+.+      .. ..|.||||.++..  ++.++|+.|+++|++.  +.++ .+.||||.|+..+  
T Consensus        13 ~~~~~~v~~LL~~GadvN------~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv--n~~~-~~~tpL~~a~~~~~~   82 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVN------EE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV--NYKG-YIETPLCAVLRNREI   82 (494)
T ss_pred             cCcHHHHHHHHHcCCCcc------cc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc--cCCC-CCCCcHHHHHhccCc
Confidence            578999999999998753      33 4689999876654  3789999999998544  4444 5799999998754  


Q ss_pred             ----CHHHHHHHHhhCccccccCCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHc--CcHH
Q 009452          109 ----CLEVLKILMEALPELLMTFDSSNTTALHTASSQ---GHVEVVKFLLEKGSTLATIARSNGKTALHSAARN--GHLE  179 (534)
Q Consensus       109 ----~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~--g~~~  179 (534)
                          +.+++++|+++|+++.. .|..|.||||.|+..   |+.+++++|+++|+++....|..|.||||+|+..  ++.+
T Consensus        83 ~~~~~~~iv~~Ll~~Gadin~-~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~  161 (494)
T PHA02989         83 TSNKIKKIVKLLLKFGADINL-KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKD  161 (494)
T ss_pred             chhhHHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHH
Confidence                47899999999998654 488999999988754   6899999999999998567889999999998754  6899


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHhC----CCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCc------H--H
Q 009452          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKG----QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR------V--Q  247 (534)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~----~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~------~--~  247 (534)
                      ++++|+++|+++....+..|.||||+|+..    ++.+++++|++ .+.+++.+|..|.||||.++..+.      .  .
T Consensus       162 iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~-~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il  240 (494)
T PHA02989        162 VIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIK-KGVNIETNNNGSESVLESFLDNNKILSKKEFKVL  240 (494)
T ss_pred             HHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHh-CCCCccccCCccccHHHHHHHhchhhcccchHHH
Confidence            999999999998765678999999999875    48999999999 677899999999999999876543      1  2


Q ss_pred             HHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCCccch
Q 009452          248 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANS  300 (534)
Q Consensus       248 ~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~  300 (534)
                      .+ +..|+++|.+|..|.||||+|+..++.+++++|++.|+++......+..+
T Consensus       241 ~~-l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~Tp  292 (494)
T PHA02989        241 NF-ILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTV  292 (494)
T ss_pred             HH-HHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCH
Confidence            33 45679999999999999999999999999999999999987665544443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=256.25  Aligned_cols=208  Identities=31%  Similarity=0.400  Sum_probs=186.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcC
Q 009452           63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG  142 (534)
Q Consensus        63 ~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  142 (534)
                      ..-++.|++.|.++-|+.|++.. ....+..|++|.|+||+||.+++++++++|++++++.+..-..-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            45678899999999999999973 46677788899999999999999999999999999987765577899999999999


Q ss_pred             CHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcC
Q 009452          143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVE  222 (534)
Q Consensus       143 ~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  222 (534)
                      +..+|++|+++|+++ ..+|.+|.+|||.|+..|+.-++-+|+.++.++.. +|.+|+||||+|+..|....++.|++. 
T Consensus       124 ~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~-~D~~grTpLmwAaykg~~~~v~~LL~f-  200 (600)
T KOG0509|consen  124 HISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL-RDNNGRTPLMWAAYKGFALFVRRLLKF-  200 (600)
T ss_pred             cHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC-cCCCCCCHHHHHHHhcccHHHHHHHHh-
Confidence            999999999999998 78999999999999999999999999999977664 499999999999999998888999984 


Q ss_pred             CccccccC-CCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhc
Q 009452          223 PVIINMVD-AKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKT  274 (534)
Q Consensus       223 ~~~in~~d-~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~  274 (534)
                      +..++..| ++|+||||+|+..|+.  ..++++.|++.+..|.+|+||+++|...
T Consensus       201 ~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  201 GASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            44566666 9999999999999986  3588889999999999999999999876

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=258.82  Aligned_cols=237  Identities=18%  Similarity=0.240  Sum_probs=201.8

Q ss_pred             hcCCCCCCcHHHHHHHc-----CCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcC---CHHHHHHHHHhCCcc
Q 009452           17 QLTAKRDDTPLQSLVRT-----GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG---YVDMVREMIRYHDTS   88 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g---~~~iv~~Ll~~~~~~   88 (534)
                      +..+..|.||||.|+..     ++.++++.|++.|++.      +.+|..|.||||+|+..|   +.+++++|++.|  .
T Consensus        65 n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi------N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G--a  136 (489)
T PHA02798         65 NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI------NKKNSDGETPLYCLLSNGYINNLEILLFMIENG--A  136 (489)
T ss_pred             CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC------CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC--C
Confidence            34678999999999864     6799999999999874      566899999999999986   789999999987  4


Q ss_pred             cccccccCCCcHHHHHHHCCC---HHHHHHHHhhCccccccCCCCCCcHHHHHHhc----CCHHHHHHHHhcCCCchhhh
Q 009452           89 LAGIKARNGYDAFHIAAKQGC---LEVLKILMEALPELLMTFDSSNTTALHTASSQ----GHVEVVKFLLEKGSTLATIA  161 (534)
Q Consensus        89 ~~~~~~~~g~t~Lh~Aa~~g~---~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~----g~~~~v~~Ll~~~~~~~~~~  161 (534)
                      +.+..+.+|.||||+|+..|+   .+++++|+++++++....+..|.||||.++..    ++.+++++|+++|+++ ...
T Consensus       137 dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i-~~~  215 (489)
T PHA02798        137 DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII-NKE  215 (489)
T ss_pred             CccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc-ccC
Confidence            567789999999999999998   99999999999987766567899999998764    5899999999999987 455


Q ss_pred             hcCCCcHHH-------HHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCC
Q 009452          162 RSNGKTALH-------SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN  234 (534)
Q Consensus       162 ~~~g~tpLh-------~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~  234 (534)
                      +..|.++++       .+...++.+++.+|+. +.+++ .+|..|+||||.|+..|+.+++++|++ .++++|.+|..|+
T Consensus       216 ~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN-~~d~~G~TPL~~A~~~~~~~~v~~LL~-~GAdin~~d~~G~  292 (489)
T PHA02798        216 NKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDIN-QVDELGFNPLYYSVSHNNRKIFEYLLQ-LGGDINIITELGN  292 (489)
T ss_pred             CccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCC-CcCcCCccHHHHHHHcCcHHHHHHHHH-cCCcccccCCCCC
Confidence            667788876       2445677889988776 46654 458999999999999999999999999 6788999999999


Q ss_pred             cHHHHHHHcCcH--HHHhhhcCCChHhhhccCC
Q 009452          235 SALHIATRKGRV--QKLLNINGVDKAVINKSRE  265 (534)
Q Consensus       235 T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~  265 (534)
                      ||||+|+..++.  ...++..+++++.......
T Consensus       293 TpL~~A~~~~~~~iv~~lL~~~~~~~~i~~~~~  325 (489)
T PHA02798        293 TCLFTAFENESKFIFNSILNKKPNKNTISYTYY  325 (489)
T ss_pred             cHHHHHHHcCcHHHHHHHHccCCCHHHHHHHHH
Confidence            999999999975  6788899999987665443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=4e-28  Score=255.53  Aligned_cols=270  Identities=17%  Similarity=0.218  Sum_probs=197.4

Q ss_pred             hcCCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCh--h-----------------------HHHHHH-h-------cC--
Q 009452           17 QLTAKRDDTPLQSLVRTG--SVELVLDMISSYGDM--E-----------------------LREMLS-K-------MN--   59 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~--~-----------------------~~~~l~-~-------~n--   59 (534)
                      +.+|..|.||||+|+..|  +.|+|+.|++.|++.  +                       ++-++. .       .+  
T Consensus        71 n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~  150 (672)
T PHA02730         71 LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYY  150 (672)
T ss_pred             cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhh
Confidence            456789999999999977  799999999996422  1                       111331 1       11  


Q ss_pred             --CCCCcHHHHHHHcCCHHHHHHHHHhCCccc-c----c-ccccCCCcHHHHHH------HCCCHHHHHHHHhhCccccc
Q 009452           60 --QSGETALYVAAEYGYVDMVREMIRYHDTSL-A----G-IKARNGYDAFHIAA------KQGCLEVLKILMEALPELLM  125 (534)
Q Consensus        60 --~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~-~----~-~~~~~g~t~Lh~Aa------~~g~~~iv~~Ll~~~~~~~~  125 (534)
                        ..|-+|+++|+..++.++|++|+++|+... .    . ..++.+.|.||++.      ..++.|++++|+++|+++..
T Consensus       151 ~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~  230 (672)
T PHA02730        151 IHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHG  230 (672)
T ss_pred             ccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCC
Confidence              367899999999999999999999986552 0    1 12222334444332      34566677777777666543


Q ss_pred             cCCCCCCcHHHH--HHhcCCHHHHHHHHh---------------------------------------------------
Q 009452          126 TFDSSNTTALHT--ASSQGHVEVVKFLLE---------------------------------------------------  152 (534)
Q Consensus       126 ~~d~~g~tpLh~--A~~~g~~~~v~~Ll~---------------------------------------------------  152 (534)
                      . |..|.||||+  |...|+.|++++|++                                                   
T Consensus       231 k-d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  309 (672)
T PHA02730        231 R-DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLI  309 (672)
T ss_pred             C-CCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcch
Confidence            3 6667777763  334455666666665                                                   


Q ss_pred             ----------------------------------------------------------cCCCchhhhhcCCCcHHHHHHH
Q 009452          153 ----------------------------------------------------------KGSTLATIARSNGKTALHSAAR  174 (534)
Q Consensus       153 ----------------------------------------------------------~~~~~~~~~~~~g~tpLh~A~~  174 (534)
                                                                                +|+++..  +..|.||||+|+.
T Consensus       310 ~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~--k~~G~TpLH~Aa~  387 (672)
T PHA02730        310 DVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK--TTDNNYPLHDYFV  387 (672)
T ss_pred             hhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc--CCCCCcHHHHHHH
Confidence                                                                      3333321  2568999999998


Q ss_pred             cCc----HHHHHHHHhcCCC-CcccCCCCCCcHHHH---HHhCC---------CHHHHHHHhhcCCccccccCCCCCcHH
Q 009452          175 NGH----LEIVKALLSKEPG-IVLRNDKKGQTALHM---AVKGQ---------SIELVDELVKVEPVIINMVDAKGNSAL  237 (534)
Q Consensus       175 ~g~----~~iv~~Ll~~~~~-~~~~~d~~g~t~Lh~---A~~~~---------~~~iv~~Ll~~~~~~in~~d~~G~T~L  237 (534)
                      .++    .+++++|+++|++ .....|..|.||||.   |...+         ..+++++|+. .++++|.+|..|+|||
T Consensus       388 ~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPL  466 (672)
T PHA02730        388 NNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLL  466 (672)
T ss_pred             HcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHH
Confidence            875    8999999999874 234458899999994   33332         2357999998 7888999999999999


Q ss_pred             HHHHHcCcH--HHHhhhcCCChHhhhc-cCCcHHHHHHhc--CchhHHHHHHhcCCCC
Q 009452          238 HIATRKGRV--QKLLNINGVDKAVINK-SRETALDTAEKT--GHSEIGVILKEHGVPC  290 (534)
Q Consensus       238 h~Aa~~~~~--~~ll~~~g~~~~~~n~-~g~T~l~~A~~~--~~~~i~~~L~~~g~~~  290 (534)
                      |+|+..++.  ..+|+.+|++++..|. .|.||++.|+..  ++.+++++|+++|++.
T Consensus       467 h~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        467 YYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            999998875  7899999999999997 599999999874  7899999999999864

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=239.24  Aligned_cols=158  Identities=25%  Similarity=0.377  Sum_probs=144.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCC
Q 009452           19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY   98 (534)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   98 (534)
                      ....|-+||-.|+..|++++|+.|++++++      ++.......|||--||..|+.++|++|++++  .+.++.|+.|.
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~------VN~tT~TNStPLraACfDG~leivKyLvE~g--ad~~IanrhGh  151 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGAS------VNDTTRTNSTPLRAACFDGHLEIVKYLVEHG--ADPEIANRHGH  151 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCc------cccccccCCccHHHHHhcchhHHHHHHHHcC--CCCcccccCCC
Confidence            356788999999999999999999999965      4555667789999999999999999999987  56788999999


Q ss_pred             cHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcH
Q 009452           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (534)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  178 (534)
                      |+||+||..||.+|+++|++.+++++.. +..|.|+||.|+..|++|++++|+.+|+.+  ..|..|.|||..|+..|+.
T Consensus       152 TcLmIa~ykGh~~I~qyLle~gADvn~k-s~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  152 TCLMIACYKGHVDIAQYLLEQGADVNAK-SYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             eeEEeeeccCchHHHHHHHHhCCCcchh-cccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcch
Confidence            9999999999999999999999998765 999999999999999999999999999876  3577799999999999999


Q ss_pred             HHHHHHHhc
Q 009452          179 EIVKALLSK  187 (534)
Q Consensus       179 ~iv~~Ll~~  187 (534)
                      ++|.+|++.
T Consensus       229 ~iVe~L~~~  237 (615)
T KOG0508|consen  229 DIVERLLQC  237 (615)
T ss_pred             HHHHHHhcC
Confidence            999999964

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=5e-29  Score=251.94  Aligned_cols=211  Identities=27%  Similarity=0.388  Sum_probs=190.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHh-cCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHH
Q 009452           23 DDTPLQSLVRTGSVELVLDMISS-YGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (534)
                      -..-++.|++.|+++.|+.+++. +.      .++..|.+|.|+||+||.+++.+++++|++++++.+. .-..-+.|||
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~------~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~-~gG~l~stPL  116 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGE------SVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNA-IGGVLGSTPL  116 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCc------CCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccc-cCCCCCCCcc
Confidence            34568899999999999999998 43      3466788999999999999999999999999865433 2236789999


Q ss_pred             HHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHH
Q 009452          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV  181 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv  181 (534)
                      |+|+++|++.++.+|+++|++.... |.+|.+|||.|+..|+.-++-+|+.+++++ +.+|.+|+||||+|+.+|+...+
T Consensus       117 HWAar~G~~~vv~lLlqhGAdpt~~-D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v  194 (600)
T KOG0509|consen  117 HWAARNGHISVVDLLLQHGADPTLK-DKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFV  194 (600)
T ss_pred             hHHHHcCcHHHHHHHHHcCCCCcee-cCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHH
Confidence            9999999999999999999987655 999999999999999999999999999887 78999999999999999998889


Q ss_pred             HHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHc
Q 009452          182 KALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK  243 (534)
Q Consensus       182 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~  243 (534)
                      ..|+..++.+....|.+|.||||+|+..|+..++. |+...+.+.+.+|.+|.||+.+|..+
T Consensus       195 ~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  195 RRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHhcccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999999998887799999999999999999999 66558888999999999999999776

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=2.8e-29  Score=273.62  Aligned_cols=261  Identities=30%  Similarity=0.412  Sum_probs=222.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      ...+.+.||+|.|++.|+.+.++.++..+.++      +..+..|.||||.|+..++.++++.+++.+.  ..+..+..|
T Consensus       369 ~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~------~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA--~~~~~~~lG  440 (1143)
T KOG4177|consen  369 QAEEKGFTPLHLAVKSGRVSVVELLLEAGADP------NSAGKNGVTPLHVAAHYGNPRVVKLLLKRGA--SPNAKAKLG  440 (1143)
T ss_pred             cccccCCcchhhhcccCchhHHHhhhhccCCc------ccCCCCCcceeeehhhccCcceEEEEeccCC--ChhhHhhcC
Confidence            34567788888888888888888888887653      4557788888888888888888888888663  445577788


Q ss_pred             CcHHHHHHHCC-CHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC
Q 009452           98 YDAFHIAAKQG-CLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (534)
Q Consensus        98 ~t~Lh~Aa~~g-~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  176 (534)
                      +||+|.|+..| ..++...+++.+.+.... -..|.||||.|+..|+.++++.|++.++.. ......|.+++|.|...+
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~-s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~  518 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADPNAV-SKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADED  518 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCcchh-ccccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhccchhhhhhhhh
Confidence            99999999888 777777777777665443 678899999999999999999999988655 445667889999999999


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcC
Q 009452          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNING  254 (534)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g  254 (534)
                      ...+++.+++++.++... +..|.||||.|+.+|+..+|++|++ ++.+++.+|+.|+||||.||..|+.  ..+|.++|
T Consensus       519 ~v~~~~~l~~~ga~v~~~-~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G  596 (1143)
T KOG4177|consen  519 TVKVAKILLEHGANVDLR-TGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG  596 (1143)
T ss_pred             hHHHHHHHhhcCCceehh-cccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcC
Confidence            999999999999887765 7899999999999999999999999 7888999999999999999999975  78999999


Q ss_pred             CChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCC
Q 009452          255 VDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  290 (534)
Q Consensus       255 ~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~  290 (534)
                      +++|..|.+|.|||++|...|+.++++.|+..+.+.
T Consensus       597 A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  597 ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             CCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            999999999999999999999999999999999884

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.7e-27  Score=255.58  Aligned_cols=241  Identities=18%  Similarity=0.189  Sum_probs=193.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHc---CCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHH-
Q 009452           36 VELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY---GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLE-  111 (534)
Q Consensus        36 ~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~-  111 (534)
                      ++.|+.|+..+.+      .+.+|.+|.||||+|+..   |+.++|+.|++.|.+  .+.++..|.||||.|+..|+.+ 
T Consensus        12 ~~~~~~l~~~~~~------~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~--v~~~~~~g~TpL~~Aa~~g~~~v   83 (661)
T PHA02917         12 LDELKQMLRDRDP------NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN--PLHKNWRQLTPLEEYTNSRHVKV   83 (661)
T ss_pred             HHHHHHHHhccCc------ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC--ccccCCCCCCHHHHHHHcCChhH
Confidence            5778889886654      356689999999998665   889999999998754  4568899999999999999855 


Q ss_pred             ---HHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHH--HcCcHHHHHHHHh
Q 009452          112 ---VLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA--RNGHLEIVKALLS  186 (534)
Q Consensus       112 ---iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~--~~g~~~iv~~Ll~  186 (534)
                         +++.|++.+... +..|  ..+++|.|+..|+.+++++|+++|+++ +.+|.+|.||||.|+  ..|+.+++++|++
T Consensus        84 ~~~~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~  159 (661)
T PHA02917         84 NKDIAMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIE  159 (661)
T ss_pred             HHHHHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHH
Confidence               556777654321 2212  236778899999999999999999998 678899999999653  5789999999999


Q ss_pred             cCCCCccc--CCCCC-----------CcHHHHHHh-----------CCCHHHHHHHhhcCCccccccCCCCCcHHHHHHH
Q 009452          187 KEPGIVLR--NDKKG-----------QTALHMAVK-----------GQSIELVDELVKVEPVIINMVDAKGNSALHIATR  242 (534)
Q Consensus       187 ~~~~~~~~--~d~~g-----------~t~Lh~A~~-----------~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~  242 (534)
                      +|++++..  .+..|           .||||+|+.           +++.+++++|++ .+.++|.+|.+|+||||+|+.
T Consensus       160 ~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~  238 (661)
T PHA02917        160 NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIK  238 (661)
T ss_pred             cCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHH
Confidence            99988643  12233           699999986           468999999999 678899999999999999999


Q ss_pred             cCc----HHHHhhhcCCChH----hhhccCCcHHHHHHhcC---------chhHHHHHHhcCCCC
Q 009452          243 KGR----VQKLLNINGVDKA----VINKSRETALDTAEKTG---------HSEIGVILKEHGVPC  290 (534)
Q Consensus       243 ~~~----~~~ll~~~g~~~~----~~n~~g~T~l~~A~~~~---------~~~i~~~L~~~g~~~  290 (534)
                      .|+    +.++|+ .|++++    ..|..|.||+++|...+         +.+++++|+++|++.
T Consensus       239 ~g~~~~eivk~Li-~g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~  302 (661)
T PHA02917        239 SSHIDIDIVKLLM-KGIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPH  302 (661)
T ss_pred             cCCCcHHHHHHHH-hCCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCC
Confidence            997    456665 588875    45667888899988421         679999999999863

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=4.1e-28  Score=264.58  Aligned_cols=268  Identities=26%  Similarity=0.387  Sum_probs=188.7

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      ..+..|.+|||.++..++.+....+.+.++..      ......|.||+|+|+.+|..++++.++..+..  .+.++..|
T Consensus       336 aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~------~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~--~~~~gk~g  407 (1143)
T KOG4177|consen  336 AARTAGYTPLHLAAKEGQVEVAGALLEHGAQR------RQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD--PNSAGKNG  407 (1143)
T ss_pred             ccCcCCcccccHhhhhhhHHHHHHhhcccccc------CcccccCCcchhhhcccCchhHHHhhhhccCC--cccCCCCC
Confidence            34455556666666666655444444443221      22245566666666666666666666666533  45556666


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcC-CHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG-HVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  176 (534)
                      .||||.|+..++.++++.+++.+++.... +..|.||+|.|+..| ..+....+++.+.++ +.....|.||||.|+..|
T Consensus       408 vTplh~aa~~~~~~~v~l~l~~gA~~~~~-~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~G  485 (1143)
T KOG4177|consen  408 VTPLHVAAHYGNPRVVKLLLKRGASPNAK-AKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEG  485 (1143)
T ss_pred             cceeeehhhccCcceEEEEeccCCChhhH-hhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccC
Confidence            66666666666666666666666554433 666677777777776 666666666666665 445566777777777777


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcC
Q 009452          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNING  254 (534)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g  254 (534)
                      +.+++..|++.++..... .+.|.+++|+|...+...+++.+++ .+..++.++..|+||||.|+..|++  +++|+++|
T Consensus       486 h~~~~~llle~~~~~~~~-~~~~l~~lhla~~~~~v~~~~~l~~-~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g  563 (1143)
T KOG4177|consen  486 HTEVVQLLLEGGANDNLD-AKKGLTPLHLAADEDTVKVAKILLE-HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG  563 (1143)
T ss_pred             CchHHHHhhhcCCccCcc-chhccchhhhhhhhhhHHHHHHHhh-cCCceehhcccccchHHHHHhcCCchHHHHhhhCC
Confidence            777777777666443322 4566777777777777777777776 5677889999999999999999986  79999999


Q ss_pred             CChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCCc
Q 009452          255 VDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQ  297 (534)
Q Consensus       255 ~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~~  297 (534)
                      +|++.+++.|+||||.|+..|+.+++.+|+++|++++......
T Consensus       564 Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g  606 (1143)
T KOG4177|consen  564 ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDG  606 (1143)
T ss_pred             ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccC
Confidence            9999999999999999999999999999999999987665443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=242.21  Aligned_cols=264  Identities=13%  Similarity=0.080  Sum_probs=172.1

Q ss_pred             CCCCCCcHHHH-HHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHH-cCCHHHHHHHHHhCCcc--------
Q 009452           19 TAKRDDTPLQS-LVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE-YGYVDMVREMIRYHDTS--------   88 (534)
Q Consensus        19 ~~~~g~t~Lh~-A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~-~g~~~iv~~Ll~~~~~~--------   88 (534)
                      .|-+|..++|. |...|++|+|+.|+++|++.      +.++..|.||||+|+. .|+.|++++|++.|++.        
T Consensus        67 ~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdv------N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~  140 (631)
T PHA02792         67 KNINDFDIFEYLCSDNIDIELLKLLISKGLEI------NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY  140 (631)
T ss_pred             CccCCccHHHHHHHhcccHHHHHHHHHcCCCc------ccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence            57788889974 56689999999999999875      4557778999999966 69999999999998541        


Q ss_pred             --------------------------cccccccCCCcHHHHHHHCC-------CHHHHHHHHhhCccccccCCCCCCcHH
Q 009452           89 --------------------------LAGIKARNGYDAFHIAAKQG-------CLEVLKILMEALPELLMTFDSSNTTAL  135 (534)
Q Consensus        89 --------------------------~~~~~~~~g~t~Lh~Aa~~g-------~~~iv~~Ll~~~~~~~~~~d~~g~tpL  135 (534)
                                                ..+..+..|.||||+|+..+       +.|+++.|++++++.... |..|.|||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~-d~~g~t~l  219 (631)
T PHA02792        141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY-TYREHTTL  219 (631)
T ss_pred             chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc-CCCCChHH
Confidence                                      11245567999999999999       899999999999987654 88999999


Q ss_pred             HHHHhcC--CHHHHHHHHhcCCCchh-----------------------hhh--cCCCc---------------------
Q 009452          136 HTASSQG--HVEVVKFLLEKGSTLAT-----------------------IAR--SNGKT---------------------  167 (534)
Q Consensus       136 h~A~~~g--~~~~v~~Ll~~~~~~~~-----------------------~~~--~~g~t---------------------  167 (534)
                      |+|+.+.  +.|+++.|++..-+-..                       +.+  -+|.+                     
T Consensus       220 ~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~  299 (631)
T PHA02792        220 YYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSIL  299 (631)
T ss_pred             HHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHH
Confidence            9999988  77888888663110000                       000  00000                     


Q ss_pred             ---------HHHHHHHcC--cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCC--C
Q 009452          168 ---------ALHSAARNG--HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG--N  234 (534)
Q Consensus       168 ---------pLh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G--~  234 (534)
                               .||.-..++  +.+++++|+++|.+..   ...+.++++.|+..|+.+++++|++ .+++++.+|.+|  .
T Consensus       300 ~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~~g~~~  375 (631)
T PHA02792        300 KRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILK-NGNVVVEDDDNIINI  375 (631)
T ss_pred             HHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHH-cCCchhhhcCCCCCh
Confidence                     122222333  4555666666655542   1223445556666666666666665 345555555543  3


Q ss_pred             cHHHHHHHcCcH-----HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCC
Q 009452          235 SALHIATRKGRV-----QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKS  293 (534)
Q Consensus       235 T~Lh~Aa~~~~~-----~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~  293 (534)
                      ||||+|+.....     ..+++.+|+|+|.+|..|.||||.|+..++.+++++|+++|++....
T Consensus       376 TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~k  439 (631)
T PHA02792        376 MPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINIT  439 (631)
T ss_pred             hHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            566655443321     24445556666666666666666666666666666666666655433

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.7e-26  Score=214.07  Aligned_cols=181  Identities=19%  Similarity=0.217  Sum_probs=142.6

Q ss_pred             HhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCC--CHHHHHHHHhhCccccccCCCCCCc
Q 009452           56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQG--CLEVLKILMEALPELLMTFDSSNTT  133 (534)
Q Consensus        56 ~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t  133 (534)
                      +.....+.||||.|+..|+.++|+.|++.     .+..+..|.||||+|+..+  +.+++++|+++++++....+..|.|
T Consensus        15 ~~~~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~T   89 (209)
T PHA02859         15 DYLFYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLS   89 (209)
T ss_pred             HHHhhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCC
Confidence            34456678899999999999999888874     2346778889999888754  7889999998888876553457889


Q ss_pred             HHHHHHhc---CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHH--cCcHHHHHHHHhcCCCCcccCCCCCCcHHHH-HH
Q 009452          134 ALHTASSQ---GHVEVVKFLLEKGSTLATIARSNGKTALHSAAR--NGHLEIVKALLSKEPGIVLRNDKKGQTALHM-AV  207 (534)
Q Consensus       134 pLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~-A~  207 (534)
                      |||+|+..   ++.+++++|+++|+++ +..|.+|.||||.|+.  .++.+++++|++.+.++.. .|..|.||||. |+
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~-~d~~g~t~Lh~~a~  167 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNNILYSYIL  167 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc-ccCCCCcHHHHHHH
Confidence            99987753   4788899999888887 5678888899988875  4678888988888888765 47888889885 45


Q ss_pred             hCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcC
Q 009452          208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (534)
Q Consensus       208 ~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~  244 (534)
                      ..++.+++++|++ .+.+++.+|..|.||||+|...+
T Consensus       168 ~~~~~~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        168 FHSDKKIFDFLTS-LGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             hcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhhh
Confidence            6778888888888 56778888888888888887543

>PF13962 PGG: Domain of unknown function

Probab=99.94  E-value=2.8e-26  Score=192.00  Aligned_cols=112  Identities=38%  Similarity=0.529  Sum_probs=94.9

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHhhhccCCcccCCCCCCCCCCCCCCcccccCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q 009452          341 TEGLNNAINSTTVVAVLIATVAFAAIFSVPGQFADKPDELPPKVSPGEAHIAPKT-PFLIFIIFDSIALFISLAVVIVQT  419 (534)
Q Consensus       341 ~e~l~~~~~~~~~va~Liat~~f~a~~~~Pgg~~~~~~~~~~~~~~g~~~~~~~~-~f~~f~~~~~~a~~~s~~~~~~~~  419 (534)
                      +||++++++++++||+|||||||||++|||||||||++      ..|+|++.+++ .|++|+++|++||++|++++++++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~------~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~   74 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD------DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI   74 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc------CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999998862      56999999887 899999999999999999998887


Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009452          420 SVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIV  458 (534)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~  458 (534)
                      +.+....+.+.........+||+++.+|++||++|+|+|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   75 SGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            533112223334566678899999999999999999876

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.4e-25  Score=210.20  Aligned_cols=175  Identities=22%  Similarity=0.242  Sum_probs=151.1

Q ss_pred             cCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcC--CHHHHHHHHhcCCCchhhhhcCCCcHHHHH
Q 009452           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG--HVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (534)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A  172 (534)
                      ..+.||||.|+..|+.++++.|++..    +..|..|.||||+|+..+  +.+++++|+++|+++....+..|.||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            45789999999999999999999752    345889999999999854  899999999999998544346899999998


Q ss_pred             HHc---CcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHh--CCCHHHHHHHhhcCCccccccCCCCCcHHHHH-HHcCcH
Q 009452          173 ARN---GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK--GQSIELVDELVKVEPVIINMVDAKGNSALHIA-TRKGRV  246 (534)
Q Consensus       173 ~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~A-a~~~~~  246 (534)
                      +..   ++.+++++|+++|++++. .|..|.||||.|+.  .++.+++++|++ .+.+++.+|.+|+||||.+ +..++.
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~-~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITE-EDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhcCCH
Confidence            753   579999999999999875 48999999999986  468999999998 6778999999999999965 555553


Q ss_pred             --HHHhhhcCCChHhhhccCCcHHHHHHhcC
Q 009452          247 --QKLLNINGVDKAVINKSRETALDTAEKTG  275 (534)
Q Consensus       247 --~~ll~~~g~~~~~~n~~g~T~l~~A~~~~  275 (534)
                        ..+|+..|++++.+|..|.||+++|...+
T Consensus       173 ~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        173 KIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence              68899999999999999999999998653

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.2e-24  Score=226.92  Aligned_cols=270  Identities=14%  Similarity=0.012  Sum_probs=195.8

Q ss_pred             cCCCCCCcHHHHHHHcCCH-HHHHHHHHhcCChhHHHHHHhcCCCCCcHHHH-HHHcCCHHHHHHHHHhCCccccccccc
Q 009452           18 LTAKRDDTPLQSLVRTGSV-ELVLDMISSYGDMELREMLSKMNQSGETALYV-AAEYGYVDMVREMIRYHDTSLAGIKAR   95 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~-Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   95 (534)
                      ++..+|.||||+-..+.+. .-++.++.-+..+      +..|-+|.+|+|+ |...|+.|+|++|+++|+  +.+.++.
T Consensus        32 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~------~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GA--dvN~~~n  103 (631)
T PHA02792         32 LYEYDGETPLKAYVTKKNNNIKNDVVILLLSSV------DYKNINDFDIFEYLCSDNIDIELLKLLISKGL--EINSIKN  103 (631)
T ss_pred             ccccCCCccHHHHHhhhhhhHHHHHHHHHHhCC------CcCccCCccHHHHHHHhcccHHHHHHHHHcCC--CcccccC
Confidence            3456788999998776653 2233333333222      3457889999977 567789999999999874  5666777


Q ss_pred             CCCcHHHHHHH-CCCHHHHHHHHhhCcccc-----------------------------------ccCCCCCCcHHHHHH
Q 009452           96 NGYDAFHIAAK-QGCLEVLKILMEALPELL-----------------------------------MTFDSSNTTALHTAS  139 (534)
Q Consensus        96 ~g~t~Lh~Aa~-~g~~~iv~~Ll~~~~~~~-----------------------------------~~~d~~g~tpLh~A~  139 (534)
                      .|.||+|+|+. .++.|++++|+++|++..                                   +..|..|.||||+|+
T Consensus       104 ~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i  183 (631)
T PHA02792        104 GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYI  183 (631)
T ss_pred             CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHH
Confidence            79999999976 699999999999986521                                   123567999999999


Q ss_pred             hcC-------CHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC--cHHHHHHHHhcCCCCccc----------------
Q 009452          140 SQG-------HVEVVKFLLEKGSTLATIARSNGKTALHSAARNG--HLEIVKALLSKEPGIVLR----------------  194 (534)
Q Consensus       140 ~~g-------~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~----------------  194 (534)
                      ..+       +.|+++.|+++|+++ ...|..|.||||+|+.+.  +.|+++.|++..-+-...                
T Consensus       184 ~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~  262 (631)
T PHA02792        184 ITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKN  262 (631)
T ss_pred             hhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCc
Confidence            999       899999999999998 557888999999999999  889999998742211000                


Q ss_pred             --CCC-------CC------------------------------CcHHHHHHhCC--CHHHHHHHhhcCCccccccCCCC
Q 009452          195 --NDK-------KG------------------------------QTALHMAVKGQ--SIELVDELVKVEPVIINMVDAKG  233 (534)
Q Consensus       195 --~d~-------~g------------------------------~t~Lh~A~~~~--~~~iv~~Ll~~~~~~in~~d~~G  233 (534)
                        .|.       .|                              |-.||.-..++  +.+++++|++. +..++  ...+
T Consensus       263 ~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~-Ga~~~--r~~~  339 (631)
T PHA02792        263 HKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE-GATLY--RFKH  339 (631)
T ss_pred             cCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC-CCccc--cCCc
Confidence              000       01                              11223333444  57888899984 44332  2235


Q ss_pred             CcHHHHHHHcCcH--HHHhhhcCCChHhhhccC--CcHHHHHHhcCch---hHHHHHHhcCCCCCCCCCCccc
Q 009452          234 NSALHIATRKGRV--QKLLNINGVDKAVINKSR--ETALDTAEKTGHS---EIGVILKEHGVPCGKSIKPQAN  299 (534)
Q Consensus       234 ~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g--~T~l~~A~~~~~~---~i~~~L~~~g~~~~~~~~~~~~  299 (534)
                      .+++|.|+..++.  .++|+.+|+|++..|..|  .|||+.|......   +++++|+++|++.+.....+..
T Consensus       340 ~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~T  412 (631)
T PHA02792        340 INKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRS  412 (631)
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcc
Confidence            6679999988875  789999999999999875  5999988776554   4678889999998765544433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.7e-23  Score=233.10  Aligned_cols=123  Identities=27%  Similarity=0.258  Sum_probs=85.8

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCccc-------------CCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCC
Q 009452          165 GKTALHSAARNGHLEIVKALLSKEPGIVLR-------------NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA  231 (534)
Q Consensus       165 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-------------~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~  231 (534)
                      |.||||.|+.+|+.++++.|+++|++++..             ....|+||||.|+..|+.+++++|++ ++.++|.+|.
T Consensus       128 G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~  206 (743)
T TIGR00870       128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADS  206 (743)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhh
Confidence            455555555555555555555555444321             12358889999999999999999888 6678888999


Q ss_pred             CCCcHHHHHHHcCc-----------HHHHhhhcCCC---h----HhhhccCCcHHHHHHhcCchhHHHHHHhcCC
Q 009452          232 KGNSALHIATRKGR-----------VQKLLNINGVD---K----AVINKSRETALDTAEKTGHSEIGVILKEHGV  288 (534)
Q Consensus       232 ~G~T~Lh~Aa~~~~-----------~~~ll~~~g~~---~----~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~  288 (534)
                      .|+||||+|+..+.           ...++...+.+   .    +..|.+|.||+++|+..|+.+++++|++.+.
T Consensus       207 ~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~  281 (743)
T TIGR00870       207 LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKY  281 (743)
T ss_pred             hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHH
Confidence            99999999988762           12344443333   3    6678899999999999999999998888543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=217.55  Aligned_cols=213  Identities=16%  Similarity=0.126  Sum_probs=166.0

Q ss_pred             HHHHcCCHHHHHHHHHhCCccc----ccccccCCCcHHHHHHH--CCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           68 VAAEYGYVDMVREMIRYHDTSL----AGIKARNGYDAFHIAAK--QGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        68 ~Aa~~g~~~iv~~Ll~~~~~~~----~~~~~~~g~t~Lh~Aa~--~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      +|+..+..|+++.|+.++...+    .-.++..++|+||.++.  .|+.+++++|+++|+++..   .++.||||.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHc
Confidence            8899999999999999886533    11366778999999998  8899999999999988753   2457899999999


Q ss_pred             CCHHHHHHHHhcCCCchhhh-----hcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHH
Q 009452          142 GHVEVVKFLLEKGSTLATIA-----RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD  216 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~-----~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~  216 (534)
                      |+.+++++|+++|++.....     +..|.+++|.|+..++.+++++|+++|++++.. |..|.||||.|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~k-D~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQL-DAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcC-CCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999987542222     234778899999999999999999999887654 888999999999999999999


Q ss_pred             HHhhcCCccccccCCCCCcHHHHHHHcCc----------HHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhc
Q 009452          217 ELVKVEPVIINMVDAKGNSALHIATRKGR----------VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH  286 (534)
Q Consensus       217 ~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~----------~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~  286 (534)
                      +|++ .++++|.+|..|.||||+|+..|+          +..+|+..|++++.....+   +..  ...+.++++.++++
T Consensus       239 lLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~~---~~~--~~~n~~~ik~lI~y  312 (437)
T PHA02795        239 WLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLAI---LNN--TIENHDVIKLCIKY  312 (437)
T ss_pred             HHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHHh---hhc--ccchHHHHHHHHHH
Confidence            9998 677889999999999999998873          4678888888877654322   111  11256777777776


Q ss_pred             CCCC
Q 009452          287 GVPC  290 (534)
Q Consensus       287 g~~~  290 (534)
                      +...
T Consensus       313 ~~~l  316 (437)
T PHA02795        313 FMMV  316 (437)
T ss_pred             HHhc
Confidence            6543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=3.8e-24  Score=215.67  Aligned_cols=204  Identities=16%  Similarity=0.054  Sum_probs=174.6

Q ss_pred             HHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCcccc-----ccCCCCCCcHHHHHHh--cCCHHHHHHH
Q 009452           78 VREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELL-----MTFDSSNTTALHTASS--QGHVEVVKFL  150 (534)
Q Consensus        78 v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~--~g~~~~v~~L  150 (534)
                      -++++.+|...+.  +..+|     +|+..+..|+++.|+.++.+..     -..+..++|+||+++.  .|+.+++++|
T Consensus        65 ~~~~~~~~~~i~~--~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         65 YDYFRIHRDNIDQ--YIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHHcCcchhh--hhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            4677777754433  33334     8999999999999999998854     1257789999999999  8999999999


Q ss_pred             HhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccC-----CCCCCcHHHHHHhCCCHHHHHHHhhcCCcc
Q 009452          151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN-----DKKGQTALHMAVKGQSIELVDELVKVEPVI  225 (534)
Q Consensus       151 l~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-----d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~  225 (534)
                      +++|+++..   .++.||+|.|+..|+.+++++|+++|++.....     +..+.+++|.|.+.++.+++++|++ ++++
T Consensus       138 I~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs-~GAD  213 (437)
T PHA02795        138 VDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP-YIED  213 (437)
T ss_pred             HHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh-CcCC
Confidence            999999843   356899999999999999999999997544332     1347899999999999999999999 6788


Q ss_pred             ccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCc--------hhHHHHHHhcCCCCCC
Q 009452          226 INMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGH--------SEIGVILKEHGVPCGK  292 (534)
Q Consensus       226 in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~--------~~i~~~L~~~g~~~~~  292 (534)
                      +|.+|..|+||||+|+..|+.  .++|+..|++++.+|..|.||||+|+..|+        .+++++|+++|++...
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            999999999999999999986  689999999999999999999999999884        6899999999987654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=1.7e-23  Score=232.99  Aligned_cols=242  Identities=20%  Similarity=0.236  Sum_probs=179.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHH-HHHHcCCHHHHHHHHHhCCcccccccccCCCc
Q 009452           21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALY-VAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (534)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh-~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (534)
                      ..+...++.|++.|+.+.|+.+++.+..    ..++..|..|.|||| .|+.+++.++++.|++.+.      .+..|.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~----~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T   84 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKK----LNINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDT   84 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccc----cCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChH
Confidence            3567899999999999999999988321    123556789999999 8999999999999999764      5778999


Q ss_pred             HHHHHHHCC---CHHHHHHHHhhCcc-----cc----ccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhh------
Q 009452          100 AFHIAAKQG---CLEVLKILMEALPE-----LL----MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA------  161 (534)
Q Consensus       100 ~Lh~Aa~~g---~~~iv~~Ll~~~~~-----~~----~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~------  161 (534)
                      |||.|+..+   ..++++.+....++     ..    ...+..|.||||+|+..|+.+++++|+++|++++...      
T Consensus        85 ~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~  164 (743)
T TIGR00870        85 LLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFV  164 (743)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhh
Confidence            999998732   22334444443322     11    1123569999999999999999999999999885321      


Q ss_pred             -------hcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCC---------CHHHHHHHhhcC--C
Q 009452          162 -------RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ---------SIELVDELVKVE--P  223 (534)
Q Consensus       162 -------~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~---------~~~iv~~Ll~~~--~  223 (534)
                             ...|.||||.|+..|+.+++++|++.+++++. .|..|+||||+|+..+         ...+.++++...  .
T Consensus       165 ~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~-~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       165 KSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT-ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             cCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh-HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence                   13589999999999999999999999987764 4899999999999986         223445554421  1


Q ss_pred             cc----ccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHh
Q 009452          224 VI----INMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEK  273 (534)
Q Consensus       224 ~~----in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~  273 (534)
                      ..    .+..|.+|.||||+|+..|+.  .++++..+.+........+.+.+.+..
T Consensus       244 ~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       244 RDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             CChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHhhh
Confidence            12    267899999999999999975  566666554433344445555555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=1.8e-23  Score=214.00  Aligned_cols=245  Identities=28%  Similarity=0.363  Sum_probs=207.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCChh-------HHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           24 DTPLQSLVRTGSVELVLDMISSYGDME-------LREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-------~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      .+-|..|++.|+.+.+..+++......       ...-.+..|.+|.|+||.|+.+|+.++++.|+++.+  .+.+.+..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea--~ldl~d~k   81 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA--LLDLCDTK   81 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchh--hhhhhhcc
Confidence            456788999999999999998643110       012245567799999999999999999999999764  44556788


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  176 (534)
                      |.+|||+|+..|+.++++.++.++ +..+..+..|.||||.|+..||.+++.+|+.+++++ .+.+..+.|+|..|++.|
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFG  159 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhh
Confidence            999999999999999999999988 444555889999999999999999999999999998 678888999999999999


Q ss_pred             cHHHHHHHHhcCCCC-------cccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--H
Q 009452          177 HLEIVKALLSKEPGI-------VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--Q  247 (534)
Q Consensus       177 ~~~iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~  247 (534)
                      ..++++.|++..-..       ...++-.+-+|||.|+++|+.++++.|+. .+.++|...++| |+||-|+.+|..  +
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaalcgk~evv  237 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAALCGKAEVV  237 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHhhcCcchhh
Confidence            999999999862111       11234567899999999999999999999 788889887776 999999999975  7


Q ss_pred             HHhhhcCCChHhhhccCCcHHHHHHhc
Q 009452          248 KLLNINGVDKAVINKSRETALDTAEKT  274 (534)
Q Consensus       248 ~ll~~~g~~~~~~n~~g~T~l~~A~~~  274 (534)
                      .+|+..|++..+.|.+|+|+|++-...
T Consensus       238 r~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  238 RFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hHHHhhccccccccccchHHHHHHHhc
Confidence            899999999999999999999997764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=1.2e-23  Score=185.49  Aligned_cols=238  Identities=23%  Similarity=0.247  Sum_probs=138.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHH
Q 009452           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (534)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (534)
                      ..+..++..|-.+--..+....        -.-++..|++-+-.+.+.|+.+++........+... ..+.+|.+++|.+
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~--------s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~-~t~p~g~~~~~v~  103 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEI--------SALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAID-ETDPEGWSALLVA  103 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHH--------HHHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCC-CCCchhhhhhhhc
Confidence            4455555555555444444322        122344555556666666666666555554333222 2344466666666


Q ss_pred             HHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHH
Q 009452          105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL  184 (534)
Q Consensus       105 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~L  184 (534)
                      +-.|+.+.++..+.++..-+. .+..+++|+.+++.+.+.+.+..+.+.-   .+..|+.|.|||.+|+..|+..+|++|
T Consensus       104 ap~~s~~k~sttltN~~rgne-vs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fL  179 (296)
T KOG0502|consen  104 APCGSVDKVSTTLTNGARGNE-VSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFL  179 (296)
T ss_pred             CCCCCcceeeeeecccccCCc-cccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHH
Confidence            666666666666665554332 2556666666666666666555555443   233556666666666666666666666


Q ss_pred             HhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhc
Q 009452          185 LSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINK  262 (534)
Q Consensus       185 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~  262 (534)
                      ++.|+++... .+...++|.+|...|..++|+.|+. .+.++|.-|-+|-|||-+|++-+++  .+.|+..|++++..+.
T Consensus       180 L~~GAdp~~l-gk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~d  257 (296)
T KOG0502|consen  180 LNSGADPDAL-GKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDD  257 (296)
T ss_pred             HHcCCChhhh-hhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccc
Confidence            6666665433 3555566666666666666666666 4445666666666666666666654  4566666666666666


Q ss_pred             cCCcHHHHHHhcCch
Q 009452          263 SRETALDTAEKTGHS  277 (534)
Q Consensus       263 ~g~T~l~~A~~~~~~  277 (534)
                      .|.+++++|...|+.
T Consensus       258 sGy~~mdlAValGyr  272 (296)
T KOG0502|consen  258 SGYWIMDLAVALGYR  272 (296)
T ss_pred             cCCcHHHHHHHhhhH
Confidence            666666666666665

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=5.2e-23  Score=210.65  Aligned_cols=234  Identities=26%  Similarity=0.311  Sum_probs=200.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCC-----------cccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHD-----------TSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT  132 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~-----------~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~  132 (534)
                      +-|.-|+..|+++.+..||+...           ....+..|.+|+|+||.|+.+|+.+++++|++..+-+... |..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~-d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLC-DTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhh-hccCc
Confidence            44778999999999999998632           2345677889999999999999999999999987765444 78999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCH
Q 009452          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (534)
Q Consensus       133 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (534)
                      +|||+|++.|+.++++.|+.++..+ +.....|.||||.|+..|+.+++.+|+.++.+.... |..++|+|.+|++.|..
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~-nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIR-NNSKETVLDLASRFGRA  161 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhcCCCcccc-CcccccHHHHHHHhhhh
Confidence            9999999999999999999999444 667788999999999999999999999999997755 89999999999999999


Q ss_pred             HHHHHHhhcCC-------ccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHH
Q 009452          213 ELVDELVKVEP-------VIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL  283 (534)
Q Consensus       213 ~iv~~Ll~~~~-------~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L  283 (534)
                      ++++.|+...-       ..-..++..+-+|||+|+++|++  ...|+..|+++|...+.| |+||.|+.+|..+++.+|
T Consensus       162 ~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~l  240 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFL  240 (854)
T ss_pred             HHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHH
Confidence            99999997521       01234567788999999999997  688999999999988776 799999999999999999


Q ss_pred             HhcCCCCCCCCCCccchH
Q 009452          284 KEHGVPCGKSIKPQANSA  301 (534)
Q Consensus       284 ~~~g~~~~~~~~~~~~~~  301 (534)
                      ++.|+.............
T Consensus       241 l~~gin~h~~n~~~qtal  258 (854)
T KOG0507|consen  241 LEIGINTHIKNQHGQTAL  258 (854)
T ss_pred             HhhccccccccccchHHH
Confidence            999998766655544333

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=3.2e-22  Score=224.15  Aligned_cols=176  Identities=26%  Similarity=0.295  Sum_probs=144.2

Q ss_pred             cccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHH
Q 009452           93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (534)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A  172 (534)
                      .+.++.++||.||..|+.++++.|++.+.+.+. .|.+|+||||+|+..|+.+++++|+++|+++ +..|.+|.||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDI-GDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHH
Confidence            344567888888888888888888888877654 4888889999999999999999998888886 66788888999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHh
Q 009452          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLL  250 (534)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll  250 (534)
                      +..|+.+++++|++.+....   ...|.++||.|+.+|+.++++.|++ .+.++|.+|.+|+||||+|+..|+.  .++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            99999999988887765432   3457788999999999999998888 5677888888899999999888875  6788


Q ss_pred             hhcCCChHhhhccC-CcHHHHHHhc
Q 009452          251 NINGVDKAVINKSR-ETALDTAEKT  274 (534)
Q Consensus       251 ~~~g~~~~~~n~~g-~T~l~~A~~~  274 (534)
                      +.+|++++..|..| .||.+++...
T Consensus       675 l~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        675 IMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            88888888888888 8888877554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=7.9e-22  Score=220.99  Aligned_cols=176  Identities=21%  Similarity=0.289  Sum_probs=157.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009452           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (534)
                      +.++.++||.||..|+.++++.|++.+.  +.+..|.+|.||||+|+..|+.++++.|++++++.. .+|.+|.||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~--d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin-~~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKL--DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH-IRDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC-CcCCCCCCHHHHH
Confidence            4456799999999999999999999874  466789999999999999999999999999988765 4599999999999


Q ss_pred             HhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q 009452          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL  218 (534)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  218 (534)
                      +..|+.+++++|++.++..   ....|.++||.|+.+|+.++++.|+++|++++. .|.+|.||||+|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~-~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS-EDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999887654   235678999999999999999999999999865 489999999999999999999999


Q ss_pred             hhcCCccccccCCCC-CcHHHHHHH
Q 009452          219 VKVEPVIINMVDAKG-NSALHIATR  242 (534)
Q Consensus       219 l~~~~~~in~~d~~G-~T~Lh~Aa~  242 (534)
                      ++ .+.+++..|.+| .||++++..
T Consensus       675 l~-~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        675 IM-NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HH-cCCCCCCCCCCCCCCHHHHHHH
Confidence            98 677899999988 999998864

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=1.4e-22  Score=178.62  Aligned_cols=242  Identities=24%  Similarity=0.309  Sum_probs=207.4

Q ss_pred             hhhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccc
Q 009452           15 KKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA   94 (534)
Q Consensus        15 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   94 (534)
                      .....+..|+.-+-.+.+.|+.+.+...+.-.++.     ....+.+|.++++.|+-.|+.+.+..+|.++..  .+..+
T Consensus        54 ~s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-----~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r--gnevs  126 (296)
T KOG0502|consen   54 ISALRNALGESLLTVAVRSGNSDVAVQSAQLDPDA-----IDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR--GNEVS  126 (296)
T ss_pred             HHHHHHhcCCcccchhhhcCCcHHHHHhhccCCCC-----CCCCCchhhhhhhhcCCCCCcceeeeeeccccc--CCccc
Confidence            34566788999999999999999999888766542     345677899999999999999999999987744  33456


Q ss_pred             cCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHH
Q 009452           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (534)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~  174 (534)
                      -.+.+|+.+++...+++.+..+.++   ..+..|+.|.|||.+|+..|++++|++|++.|+++ ....+...++|..|++
T Consensus       127 ~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~  202 (296)
T KOG0502|consen  127 LMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATR  202 (296)
T ss_pred             cccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhc
Confidence            6799999999999888888777664   34566999999999999999999999999999998 6667778899999999


Q ss_pred             cCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH-HHHhhhc
Q 009452          175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV-QKLLNIN  253 (534)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~-~~ll~~~  253 (534)
                      .|..++|+.|++++++++.. |.+|.|||-+|++.++.++++.|+. .+.+++..|..|++++.+|+..|+- .+-.++.
T Consensus       203 ggytdiV~lLL~r~vdVNvy-DwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr~Vqqvie~  280 (296)
T KOG0502|consen  203 GGYTDIVELLLTREVDVNVY-DWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYRIVQQVIEK  280 (296)
T ss_pred             CChHHHHHHHHhcCCCccee-ccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999998765 9999999999999999999999999 6788999999999999999999974 5555666


Q ss_pred             CCChHhhhccCCcHHH
Q 009452          254 GVDKAVINKSRETALD  269 (534)
Q Consensus       254 g~~~~~~n~~g~T~l~  269 (534)
                      -++++.+|+.-.||+|
T Consensus       281 h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  281 HALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHhhcccCCCCCC
Confidence            6677777777777653

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.87  E-value=1.5e-22  Score=212.57  Aligned_cols=224  Identities=22%  Similarity=0.246  Sum_probs=167.4

Q ss_pred             HHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc
Q 009452           13 KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI   92 (534)
Q Consensus        13 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~   92 (534)
                      ......+..+-+|+|..|++.|+.|+|+.|+.+|.+.      +.+++.|.+||.+|+-.||..+|+.|++++.. ....
T Consensus       747 ~~id~~Te~n~~t~LT~acaggh~e~vellv~rgani------ehrdkkgf~plImaatagh~tvV~~llk~ha~-veaQ  819 (2131)
T KOG4369|consen  747 TVIDPLTEPNIKTNLTSACAGGHREEVELLVVRGANI------EHRDKKGFVPLIMAATAGHITVVQDLLKAHAD-VEAQ  819 (2131)
T ss_pred             eeeccccCccccccccccccCccHHHHHHHHHhcccc------cccccccchhhhhhcccCchHHHHHHHhhhhh-hhhh
Confidence            3444556677789999999999999999999998764      45589999999999999999999999987643 3345


Q ss_pred             cccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhh-cCCCcHHHH
Q 009452           93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR-SNGKTALHS  171 (534)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpLh~  171 (534)
                      .|+.+.|+|.+||..|..++|++|+..+.+-.. ++-...|||.+|...|..++++.|+..|..++.... +.|..||..
T Consensus       820 sdrtkdt~lSlacsggr~~vvelLl~~gankeh-rnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLml  898 (2131)
T KOG4369|consen  820 SDRTKDTMLSLACSGGRTRVVELLLNAGANKEH-RNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLML  898 (2131)
T ss_pred             cccccCceEEEecCCCcchHHHHHHHhhccccc-cchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhh
Confidence            678889999999999999999999988876543 366778888888888888888888888877754433 457888888


Q ss_pred             HHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCc
Q 009452          172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR  245 (534)
Q Consensus       172 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~  245 (534)
                      |..+|+.+.++.|++.+.+++.....+.+|+|-+|+-.|+.+++..|+. ....+..+-+.|-|||.-++..|.
T Consensus       899 atmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa-~~anvehRaktgltplme~AsgGy  971 (2131)
T KOG4369|consen  899 ATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA-AQANVEHRAKTGLTPLMEMASGGY  971 (2131)
T ss_pred             hhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHH-HhhhhhhhcccCCcccchhhcCCc
Confidence            8888888888888888887766655666666666666666666666665 233334444444444444444443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.85  E-value=1e-21  Score=206.46  Aligned_cols=263  Identities=18%  Similarity=0.247  Sum_probs=183.4

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      ...|+.|-+||..|+-.||..+|+.|+....+.+     ...|..++|+|.+||..|..++|+.||..+.  ....++..
T Consensus       784 ehrdkkgf~plImaatagh~tvV~~llk~ha~ve-----aQsdrtkdt~lSlacsggr~~vvelLl~~ga--nkehrnvs  856 (2131)
T KOG4369|consen  784 EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE-----AQSDRTKDTMLSLACSGGRTRVVELLLNAGA--NKEHRNVS  856 (2131)
T ss_pred             cccccccchhhhhhcccCchHHHHHHHhhhhhhh-----hhcccccCceEEEecCCCcchHHHHHHHhhc--cccccchh
Confidence            4567888888888888888888888887765432     3446677788888888888888887777663  23345556


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccC-CCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhh---------------
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTF-DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI---------------  160 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---------------  160 (534)
                      .+|||.+|...|..+++..|+..+.+++... ...|-+||.+|...||.+.++.|++.|.+++..               
T Consensus       857 DytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq  936 (2131)
T KOG4369|consen  857 DYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ  936 (2131)
T ss_pred             hcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecccc
Confidence            6677777776667777777776666554332 234566666666666666666666666555333               


Q ss_pred             ------------------hhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCccc-CCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          161 ------------------ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR-NDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       161 ------------------~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                                        +-..|.|||+-++..|.+|+=+.|+..|+|.+.. .-....|+|-+++..|+...++.|+. 
T Consensus       937 gr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln- 1015 (2131)
T KOG4369|consen  937 GRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLN- 1015 (2131)
T ss_pred             CcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhC-
Confidence                              3344566666666666666666666666554432 12334466666666666777766665 


Q ss_pred             CCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcC
Q 009452          222 EPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  287 (534)
Q Consensus       222 ~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g  287 (534)
                      ...-+..++++|+|+|.+|+.-|..  ..+|..+++|++..|+...+++.-|.+.|+.+|+++.....
T Consensus      1016 ~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~a 1083 (2131)
T KOG4369|consen 1016 GDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPPA 1083 (2131)
T ss_pred             CccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccCch
Confidence            4455778899999999999998886  68999999999999999999999999999999988775543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-20  Score=186.59  Aligned_cols=231  Identities=23%  Similarity=0.319  Sum_probs=179.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHH
Q 009452           24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHI  103 (534)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~  103 (534)
                      .-.+..|+..|+.+-|+.|+..++++      +..|.+|.|+||-|+...+.+||++|++++  .+++..|..|+||||.
T Consensus        41 sa~~l~A~~~~d~~ev~~ll~~ga~~------~~~n~DglTalhq~~id~~~e~v~~l~e~g--a~Vn~~d~e~wtPlha  112 (527)
T KOG0505|consen   41 SAVFLEACSRGDLEEVRKLLNRGASP------NLCNVDGLTALHQACIDDNLEMVKFLVENG--ANVNAQDNEGWTPLHA  112 (527)
T ss_pred             hHHHHhccccccHHHHHHHhccCCCc------cccCCccchhHHHHHhcccHHHHHHHHHhc--CCccccccccCCcchh
Confidence            34577888999999999999988765      556899999999999999999999999987  4567788899999999


Q ss_pred             HHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCchhhhhcCCCcHHHHHHHcCcHHHHH
Q 009452          104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGHLEIVK  182 (534)
Q Consensus       104 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~  182 (534)
                      |+..|+..++++++++++++... |.+|..|+..|...-..++...-... |.++.......-.+         ..+=++
T Consensus       113 aascg~~~i~~~li~~gA~~~av-Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~---------ml~D~~  182 (527)
T KOG0505|consen  113 AASCGYLNIVEYLIQHGANLLAV-NSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQT---------MLDDAR  182 (527)
T ss_pred             hcccccHHHHHHHHHhhhhhhhc-cCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHH---------HHHHHH
Confidence            99999999999999999987765 88888898887665555544433332 22211101110111         111223


Q ss_pred             HHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhh
Q 009452          183 ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVI  260 (534)
Q Consensus       183 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~  260 (534)
                      ..+..|...... +..|.|.||+|+.+|..++.++|+. .+..++.+|.+|+||||.|+..|..  ..+|..+|++.+..
T Consensus       183 q~l~~G~~~d~~-~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  183 QWLNAGAELDAR-HARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             HHHhcccccccc-ccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchh
Confidence            334466655554 4559999999999999999999999 6777999999999999999999975  67999999999999


Q ss_pred             hccCCcHHHHHHhc
Q 009452          261 NKSRETALDTAEKT  274 (534)
Q Consensus       261 n~~g~T~l~~A~~~  274 (534)
                      +..|+||+++|...
T Consensus       261 t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  261 TKMGETPLDVADEE  274 (527)
T ss_pred             hhcCCCCccchhhh
Confidence            99999999998753

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=4.7e-20  Score=174.31  Aligned_cols=154  Identities=29%  Similarity=0.383  Sum_probs=101.8

Q ss_pred             cccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHh-----cCCHHHHHHHHhcCCCchhhhhcCC
Q 009452           91 GIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS-----QGHVEVVKFLLEKGSTLATIARSNG  165 (534)
Q Consensus        91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~-----~g~~~~v~~Ll~~~~~~~~~~~~~g  165 (534)
                      ++.|.+|+|+||||+..+|+++|+.|++.+.......|.-|.||+++|+.     ..+.++|..|...|. ++......|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhhc
Confidence            34466677777777777777777777766665555556667777666653     234566666666653 334445567


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCc
Q 009452          166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR  245 (534)
Q Consensus       166 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~  245 (534)
                      .|+|++|+..|+.++|+.||..+++++.. |.+|.|+|+.|+++|+.++++.|+.....++...|.+|-|+|.+|-..|+
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNiQ-DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNIQ-DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCccc-cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            77777777777777777777777766544 66777777777777777777777776666677777777777777776666


Q ss_pred             H
Q 009452          246 V  246 (534)
Q Consensus       246 ~  246 (534)
                      -
T Consensus       420 ~  420 (452)
T KOG0514|consen  420 R  420 (452)
T ss_pred             h
Confidence            4

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=4.4e-20  Score=174.50  Aligned_cols=166  Identities=30%  Similarity=0.321  Sum_probs=135.7

Q ss_pred             HHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHC-----CCHHHHHHHHhhCccccccC
Q 009452           53 EMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQ-----GCLEVLKILMEALPELLMTF  127 (534)
Q Consensus        53 ~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~iv~~Ll~~~~~~~~~~  127 (534)
                      ..++..|.+|+|+||||+..+|+++|+.||+.+- -+++.+|+-|+||+++|+..     .+.++|..|...+. ++..-
T Consensus       259 yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv-C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKA  336 (452)
T KOG0514|consen  259 YVVNLADSNGNTALHYAVSHANFDVVSILLDSGV-CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKA  336 (452)
T ss_pred             HHhhhhcCCCCeeeeeeecccchHHHHHHhccCc-ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhh
Confidence            4456667889999999999999999999999864 34667788899999988854     36778888888654 33334


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 009452          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (534)
Q Consensus       128 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (534)
                      ...|+|+|++|+.+|+.++|+.||..|+++ +++|.+|.|+|++|+..||.|+++.||....-.....|.+|.|+|.+|.
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL  415 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH
Confidence            677999999999999999999999999998 7788999999999999999999999987754445567889999999999


Q ss_pred             hCCCHHHHHHHhhc
Q 009452          208 KGQSIELVDELVKV  221 (534)
Q Consensus       208 ~~~~~~iv~~Ll~~  221 (534)
                      +.|+.+|.-.|..+
T Consensus       416 eagh~eIa~mlYa~  429 (452)
T KOG0514|consen  416 EAGHREIAVMLYAH  429 (452)
T ss_pred             hcCchHHHHHHHHH
Confidence            99999988887753

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.82  E-value=6.2e-18  Score=176.09  Aligned_cols=210  Identities=22%  Similarity=0.241  Sum_probs=152.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCC-------cccccccccCCCcHHHHHHH---CCCHHHHHHHHhhCccccccC----CC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHD-------TSLAGIKARNGYDAFHIAAK---QGCLEVLKILMEALPELLMTF----DS  129 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~-------~~~~~~~~~~g~t~Lh~Aa~---~g~~~iv~~Ll~~~~~~~~~~----d~  129 (534)
                      .++..|...+..+....|+....       .-..+.+...|.|+||.|..   .++.++++.|++..|.+.+..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            56667777777777766666442       12344456678899998887   345688899998888765432    35


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCccc-CCCCCCcHHHHHHh
Q 009452          130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR-NDKKGQTALHMAVK  208 (534)
Q Consensus       130 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~d~~g~t~Lh~A~~  208 (534)
                      .|.||||.|+.+.+.++|++|++.|+|+.......-..|=..  +.++         .  .-++. .=.-|+.||..|+.
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dq--k~~r---------k--~T~Y~G~~YfGEyPLSfAAC  249 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQ--KASR---------K--STNYTGYFYFGEYPLSFAAC  249 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccc--cccc---------c--ccCCcceeeeccCchHHHHH
Confidence            688999999998899999999999888733211110000000  0000         0  00000 01348899999999


Q ss_pred             CCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCC--hHhhhccCCcHHHHHHhcCchhHHHHHH
Q 009452          209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVD--KAVINKSRETALDTAEKTGHSEIGVILK  284 (534)
Q Consensus       209 ~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~--~~~~n~~g~T~l~~A~~~~~~~i~~~L~  284 (534)
                      -++.+++++|++ .+++++.+|.+|||.||..+.+-..  -.+++.+|++  ...+|+.|.|||.+|++.|+.++.+.++
T Consensus       250 ~nq~eivrlLl~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~il  328 (782)
T KOG3676|consen  250 TNQPEIVRLLLA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHIL  328 (782)
T ss_pred             cCCHHHHHHHHh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHH
Confidence            999999999999 8889999999999999999877443  4677888888  8899999999999999999999999998


Q ss_pred             hcC
Q 009452          285 EHG  287 (534)
Q Consensus       285 ~~g  287 (534)
                      +..
T Consensus       329 e~~  331 (782)
T KOG3676|consen  329 ERR  331 (782)
T ss_pred             Hhh
Confidence            873

>PHA02741 hypothetical protein; Provisional

Probab=99.80  E-value=5.5e-19  Score=160.09  Aligned_cols=131  Identities=21%  Similarity=0.306  Sum_probs=81.1

Q ss_pred             HhcCCCCCcHHHHHHHcCCHHHHHHHHHhC----CcccccccccCCCcHHHHHHHCCC----HHHHHHHHhhCccccccC
Q 009452           56 SKMNQSGETALYVAAEYGYVDMVREMIRYH----DTSLAGIKARNGYDAFHIAAKQGC----LEVLKILMEALPELLMTF  127 (534)
Q Consensus        56 ~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~----~~~~~~~~~~~g~t~Lh~Aa~~g~----~~iv~~Ll~~~~~~~~~~  127 (534)
                      +.+|..|.||||+|++.|+.++++.|+...    .....+.+|..|.||||+|+..|+    .+++++|++.++++... 
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~-   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ-   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC-
Confidence            344566777777777777777777665421    123345556666677777776666    35666666666654433 


Q ss_pred             C-CCCCcHHHHHHhcCCHHHHHHHHhc-CCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcC
Q 009452          128 D-SSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGHLEIVKALLSKE  188 (534)
Q Consensus       128 d-~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~  188 (534)
                      | ..|+||||+|+..++.+++++|++. +.++ ...|.+|.||||.|+..|+.+++++|++.+
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            4 3566666666666666666666653 5554 455666666666666666666666666554

>PHA02741 hypothetical protein; Provisional

Probab=99.80  E-value=1.5e-18  Score=157.25  Aligned_cols=137  Identities=15%  Similarity=0.190  Sum_probs=114.4

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCC----HHHHHHHHHhCCcccccc
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGY----VDMVREMIRYHDTSLAGI   92 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~----~~iv~~Ll~~~~~~~~~~   92 (534)
                      ...|..|.||||+|++.|+.++++.|+...........++.+|..|.||||+|+..|+    .+++++|++.+.  +.+.
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga--din~   92 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA--DINA   92 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC--CCCC
Confidence            4578899999999999999999999875431111224467889999999999999999    588999999774  4556


Q ss_pred             ccc-CCCcHHHHHHHCCCHHHHHHHHhh-CccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 009452           93 KAR-NGYDAFHIAAKQGCLEVLKILMEA-LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST  156 (534)
Q Consensus        93 ~~~-~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  156 (534)
                      ++. .|.||||+|+..++.+++++|++. +.++ ...|..|.||||+|+..|+.+++++|++.++.
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            664 899999999999999999999974 6654 45589999999999999999999999998654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=1.3e-18  Score=148.21  Aligned_cols=142  Identities=28%  Similarity=0.317  Sum_probs=111.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHH
Q 009452          134 ALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE  213 (534)
Q Consensus       134 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  213 (534)
                      .+.+|+..+....|+.||+..++..+.+|.+|+||||.|+.+|+.+|++.|+..+++.... ...|+||||.|++..+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~-T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK-TNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccc-cccCccchhhhhcccchh
Confidence            3556777777788888887777777777788888888888888888888888877776655 577888888888888888


Q ss_pred             HHHHHhhcCCccccccCCCCCcHHHHHHHcCcH----HHHhhhcCCChHhhhccCCcHHHHHHhcCch
Q 009452          214 LVDELVKVEPVIINMVDAKGNSALHIATRKGRV----QKLLNINGVDKAVINKSRETALDTAEKTGHS  277 (534)
Q Consensus       214 iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~----~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~  277 (534)
                      ++-.|+. +++++|.......||||+||...+.    ..|+...++++-.+++.+.||+++|.+.+-.
T Consensus       145 va~~LLq-hgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  145 VAGRLLQ-HGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHHHh-ccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            8888887 6777888888888888888877764    5677788889999999999999999877543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.8e-18  Score=156.05  Aligned_cols=102  Identities=18%  Similarity=0.210  Sum_probs=45.0

Q ss_pred             CCCCCcHHHHHHhcCCHH---HHHHHHhcCCCchhhhh-cCCCcHHHHHHHcCcHHHHHHHHh-cCCCCcccCCCCCCcH
Q 009452          128 DSSNTTALHTASSQGHVE---VVKFLLEKGSTLATIAR-SNGKTALHSAARNGHLEIVKALLS-KEPGIVLRNDKKGQTA  202 (534)
Q Consensus       128 d~~g~tpLh~A~~~g~~~---~v~~Ll~~~~~~~~~~~-~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~  202 (534)
                      |..|+||||+|+..|+.+   ++++|++.|+++ +..+ ..|.||||+|+..|+.+++++|++ .+.++.. .|..|.||
T Consensus        54 d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~-~d~~g~tp  131 (166)
T PHA02743         54 DHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA-INYQHETA  131 (166)
T ss_pred             CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC-cCCCCCCH
Confidence            444444444444444432   244444444444 2222 244445554444444444444442 3333322 24444455


Q ss_pred             HHHHHhCCCHHHHHHHhhcCCccccccCCC
Q 009452          203 LHMAVKGQSIELVDELVKVEPVIINMVDAK  232 (534)
Q Consensus       203 Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~  232 (534)
                      ||+|+..++.+++++|++ .+.+++.++..
T Consensus       132 L~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~  160 (166)
T PHA02743        132 YHIAYKMRDRRMMEILRA-NGAVCDDPLSI  160 (166)
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCCcccC
Confidence            555544444444444444 33334444433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.3e-18  Score=156.85  Aligned_cols=137  Identities=21%  Similarity=0.258  Sum_probs=102.7

Q ss_pred             CCCCCcHHHHHHhcCCH----HHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHH---HHHHHhcCCCCcccCCCCCC
Q 009452          128 DSSNTTALHTASSQGHV----EVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI---VKALLSKEPGIVLRNDKKGQ  200 (534)
Q Consensus       128 d~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~i---v~~Ll~~~~~~~~~~d~~g~  200 (534)
                      +.++.++||.||+.|+.    +++++|++.+..+ ...|.+|+||||+|+..|+.+.   +++|++.+++++...+..|.
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            56677788888888887    5556677777665 5567788888888888877554   78888888877654225788


Q ss_pred             cHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCC
Q 009452          201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRE  265 (534)
Q Consensus       201 t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~  265 (534)
                      ||||+|+..++.+++++|+...+.+++.+|..|.||||+|+..++.  ..+|+.+|++++.++..|.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            8888888888888888888545677788888888888888877764  5777777777777776654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=5.6e-18  Score=164.80  Aligned_cols=154  Identities=13%  Similarity=0.068  Sum_probs=90.7

Q ss_pred             CCCCCc-HHHHHHhcCCHHHHHHHHhcCCCchhh---hhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHH
Q 009452          128 DSSNTT-ALHTASSQGHVEVVKFLLEKGSTLATI---ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTAL  203 (534)
Q Consensus       128 d~~g~t-pLh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  203 (534)
                      |..|.| +||.|+..|+.+++++|+++|+++...   .+..|.||||+|+..|+.+++++|+++|++++...+..|.|||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL  108 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL  108 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence            444443 344455556666666666666665322   1345666666666666666666666666666543344566666


Q ss_pred             HHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHH
Q 009452          204 HMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL  283 (534)
Q Consensus       204 h~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L  283 (534)
                      |.|+..++.+++++|++ .+.+++.+|..|.||||+|+..++........|..   .+..+.+|...+   ++.+++++|
T Consensus       109 h~Aa~~~~~eivklLL~-~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~n~ei~~~L  181 (300)
T PHA02884        109 YISVLHGCLKCLEILLS-YGADINIQTNDMVTPIELALMICNNFLAFMICDNE---ISNFYKHPKKIL---INFDILKIL  181 (300)
T ss_pred             HHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc---ccccccChhhhh---ccHHHHHHH
Confidence            66666666666666666 45566666666777777776655432112222322   345556666654   356777777


Q ss_pred             HhcCC
Q 009452          284 KEHGV  288 (534)
Q Consensus       284 ~~~g~  288 (534)
                      +.+++
T Consensus       182 ish~v  186 (300)
T PHA02884        182 VSHFI  186 (300)
T ss_pred             HHHHH
Confidence            77776

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.9e-18  Score=154.29  Aligned_cols=139  Identities=17%  Similarity=0.186  Sum_probs=91.6

Q ss_pred             hhhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHH---HHHHHHHhCCccccc
Q 009452           15 KKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVD---MVREMIRYHDTSLAG   91 (534)
Q Consensus        15 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~---iv~~Ll~~~~~~~~~   91 (534)
                      ..+..|.+|.||||+|++.|+.+.+........+. ....+...|..|.||||+|+..|+.+   ++++|++.+.  +.+
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga--din   85 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGVTDLLAFKNAISDE-NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA--DIN   85 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcch-hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC--Ccc
Confidence            34556778888888888888743222211111111 12345566778888888888887764   5677777663  344


Q ss_pred             ccc-cCCCcHHHHHHHCCCHHHHHHHHhh-CccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc
Q 009452           92 IKA-RNGYDAFHIAAKQGCLEVLKILMEA-LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL  157 (534)
Q Consensus        92 ~~~-~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  157 (534)
                      .++ ..|.||||+|+..|+.+++++|+.. +.+. +..|..|.||||+|+..|+.+++++|+++|++.
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            555 4778888888888888888888764 4443 344777788888888777888888777777653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.4e-18  Score=155.02  Aligned_cols=136  Identities=21%  Similarity=0.175  Sum_probs=95.4

Q ss_pred             HHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCC-----cccccccccCCCcHHHHHHHCCCHH---HHHHHHhhCcccc
Q 009452           53 EMLSKMNQSGETALYVAAEYGYVDMVREMIRYHD-----TSLAGIKARNGYDAFHIAAKQGCLE---VLKILMEALPELL  124 (534)
Q Consensus        53 ~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~-----~~~~~~~~~~g~t~Lh~Aa~~g~~~---iv~~Ll~~~~~~~  124 (534)
                      .+.+..|.+|.||||+|++.|+.  ++.+...+.     .......|.+|.||||+|+..|+.+   ++++|++.++++.
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            45677788899999999999884  222222111     1123345677888888888887763   5777888777665


Q ss_pred             ccCCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCC
Q 009452          125 MTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI  191 (534)
Q Consensus       125 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  191 (534)
                      ...+..|.||||+|+..|+.+++++|+++ +.++ ...+..|.||||+|+..|+.+++++|++.++++
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            44224788888888888888888888864 6665 556777888888888888888888888777654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=6.1e-18  Score=164.52  Aligned_cols=154  Identities=13%  Similarity=0.167  Sum_probs=103.3

Q ss_pred             HHhcCCCCCc-HHHHHHHcCCHHHHHHHHHhCCccccccc----ccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCC
Q 009452           55 LSKMNQSGET-ALYVAAEYGYVDMVREMIRYHDTSLAGIK----ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDS  129 (534)
Q Consensus        55 l~~~n~~g~T-~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~----~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~  129 (534)
                      +..+|..|.| +||.|+..|+.+++++|++.|...  +.+    +..|.||||+|+..|+.+++++|+++|+++....+.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi--N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP--EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc--cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC
Confidence            3445666654 555666667788888888777443  333    346778888888777888888888777766543345


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhC
Q 009452          130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG  209 (534)
Q Consensus       130 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  209 (534)
                      .|.||||.|+..|+.+++++|++.|+++ ...|..|.||||.|+..++.+++..+...  .    .+..+.+|++.+   
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~---  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDN--E----ISNFYKHPKKIL---  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCC--c----ccccccChhhhh---
Confidence            6777888877777788888888777776 45667777788777777777766544321  1    245566676654   


Q ss_pred             CCHHHHHHHhh
Q 009452          210 QSIELVDELVK  220 (534)
Q Consensus       210 ~~~~iv~~Ll~  220 (534)
                      ++.++++.|+.
T Consensus       173 ~n~ei~~~Lis  183 (300)
T PHA02884        173 INFDILKILVS  183 (300)
T ss_pred             ccHHHHHHHHH
Confidence            35677777666

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=6.1e-18  Score=168.32  Aligned_cols=218  Identities=24%  Similarity=0.338  Sum_probs=170.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCH
Q 009452           65 ALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV  144 (534)
Q Consensus        65 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  144 (534)
                      .+.-|+..|..+-|+.|+..+.+  .+..+.+|.|+||-||...+.+||++|+++++.++.. |..|+||||.|+..|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~--~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~-d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS--PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQ-DNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC--ccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccc-ccccCCcchhhcccccH
Confidence            45668899999999999998744  4678899999999999999999999999999987765 99999999999999999


Q ss_pred             HHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCC
Q 009452          145 EVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK-EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP  223 (534)
Q Consensus       145 ~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  223 (534)
                      .++++|+.+|++. ...+.+|..|...+...-..+++..-... +.++...+....++-|+        ++-.++.  .+
T Consensus       120 ~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~--------D~~q~l~--~G  188 (527)
T KOG0505|consen  120 NIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLD--------DARQWLN--AG  188 (527)
T ss_pred             HHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHH--------HHHHHHh--cc
Confidence            9999999999997 55677888888877655444444433322 11111111111111111        2222333  46


Q ss_pred             ccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCC
Q 009452          224 VIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKP  296 (534)
Q Consensus       224 ~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~  296 (534)
                      ...+..+..|.|.||.|+.+|..  ..+|+..|.+++++|.+|+||||.|+..|..+++++|.++|+++......
T Consensus       189 ~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~  263 (527)
T KOG0505|consen  189 AELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKM  263 (527)
T ss_pred             ccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhc
Confidence            66778888899999999999986  68999999999999999999999999999999999999999998765544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=2.4e-17  Score=140.53  Aligned_cols=145  Identities=24%  Similarity=0.303  Sum_probs=123.1

Q ss_pred             HHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHH
Q 009452          100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE  179 (534)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  179 (534)
                      -+-.|+..+.+..|+.|++..++..+.+|.+|.||||-|+..|+.++++.|+..|++. ..+...|+||||.|++..+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            4567888899999999999999999999999999999999999999999999999987 556778999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCH-HHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH
Q 009452          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI-ELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (534)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~-~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~  246 (534)
                      ++..|+++|++++.. .+...||||+|+.+++. ..+++|+.........++..+.||+.+|-+-+-.
T Consensus       145 va~~LLqhgaDVnA~-t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQ-TKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHHHhccCccccc-ccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            999999999998766 56778999999987665 4566666655556677888899999999876543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.66  E-value=6.3e-17  Score=148.60  Aligned_cols=130  Identities=28%  Similarity=0.380  Sum_probs=88.8

Q ss_pred             hhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHH
Q 009452          159 TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH  238 (534)
Q Consensus       159 ~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh  238 (534)
                      +.-|..|.+|||+|++.|+..+++.|+.+|+.++.. +....||||+|+.+|+-++|..|++ ...++|..++.|+||||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgarvn~t-nmgddtplhlaaahghrdivqkll~-~kadvnavnehgntplh  105 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST-NMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVNEHGNTPLH  105 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccccccc-cCCCCcchhhhhhcccHHHHHHHHH-HhcccchhhccCCCchh
Confidence            555666777777777777777777777777765543 4555677777777777777777777 55667777778888888


Q ss_pred             HHHHcCc--HHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCC
Q 009452          239 IATRKGR--VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  290 (534)
Q Consensus       239 ~Aa~~~~--~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~  290 (534)
                      +||-.|.  +.+=|+..|+.+++.|+.|.||++.|.-.-...+.++-.+.|..+
T Consensus       106 yacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~  159 (448)
T KOG0195|consen  106 YACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSP  159 (448)
T ss_pred             hhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCC
Confidence            8877775  356667777788888888888887764333333334444555443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.65  E-value=1.8e-15  Score=157.92  Aligned_cols=196  Identities=20%  Similarity=0.218  Sum_probs=157.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCChhH---HHHHHhcCCCCCcHHHHHHHc---CCHHHHHHHHHhCCcccc---ccccc
Q 009452           25 TPLQSLVRTGSVELVLDMISSYGDMEL---REMLSKMNQSGETALYVAAEY---GYVDMVREMIRYHDTSLA---GIKAR   95 (534)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~---~~~l~~~n~~g~T~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~---~~~~~   95 (534)
                      .++..|...+.++....++..+.....   .+.++.+..-|+|.||.|..+   ++.+++..|++..+.-..   .....
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            677888888888888877765532211   133556667799999999874   456889999987542111   11245


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhhCcccccc--------CC--------------CCCCcHHHHHHhcCCHHHHHHHHhc
Q 009452           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMT--------FD--------------SSNTTALHTASSQGHVEVVKFLLEK  153 (534)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~--------~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~~  153 (534)
                      .|.||||+|+.+.+.++|++|++.++++...        .|              ..|..||.+||-.++.|++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            6999999999999999999999998875321        11              2477999999999999999999999


Q ss_pred             CCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCC-CcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          154 GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG-IVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       154 ~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                      |+|+ +.+|.+|+|.||..+..-..++..++++++++ ....+|..|.|||.+|++-|+.++++.+++.
T Consensus       263 gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9998 77999999999999999999999999999988 2234589999999999999999999999985

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.61  E-value=1.1e-14  Score=124.24  Aligned_cols=122  Identities=37%  Similarity=0.617  Sum_probs=61.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009452           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (534)
                      |.+|.||||.|+..|+.+++++|++.+...  ...+..|.||||.|+..++.++++.|++.++... ..+..|.||+|+|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~l~~a   80 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTPLHLA   80 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHH
Confidence            344555555555555555555555544221  3344455555555555555555555555544322 2244455555555


Q ss_pred             HhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHH
Q 009452          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL  184 (534)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~L  184 (534)
                      +..++.+++++|++++.+. ...+..|.||++.|...++.+++++|
T Consensus        81 ~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            5555555555555554333 23344455555555555555555444

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.61  E-value=1.7e-14  Score=123.00  Aligned_cols=124  Identities=41%  Similarity=0.667  Sum_probs=97.6

Q ss_pred             cccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHH
Q 009452           93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (534)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A  172 (534)
                      .+.+|.||||.|+..|+.++++.|++.++.. ...+..|.||||.|+..++.+++++|++.++.+ ...+..|.||+|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHH
Confidence            4567888888888888888888888887765 344778888888888888888888888888655 44567788888888


Q ss_pred             HHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHh
Q 009452          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV  219 (534)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  219 (534)
                      +..++.+++++|++++.+... .+..|.||++.|+..++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVNA-RDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888888888888887755444 3677888888888888888887764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.59  E-value=1.2e-14  Score=116.78  Aligned_cols=84  Identities=49%  Similarity=0.733  Sum_probs=36.7

Q ss_pred             HHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHH
Q 009452          101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI  180 (534)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~i  180 (534)
                      ||.|+..|+.++++.|++.++++..     |.||||+|+..|+.+++++|+++|+++ ...|.+|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHH
Confidence            3444444444444444443333211     444444444444444444444444443 3333444444444444444444


Q ss_pred             HHHHHhcCCC
Q 009452          181 VKALLSKEPG  190 (534)
Q Consensus       181 v~~Ll~~~~~  190 (534)
                      +++|+++|++
T Consensus        75 ~~~Ll~~g~~   84 (89)
T PF12796_consen   75 VKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTT-
T ss_pred             HHHHHHcCCC
Confidence            4444444443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.58  E-value=1.3e-14  Score=116.51  Aligned_cols=85  Identities=34%  Similarity=0.556  Sum_probs=51.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHH
Q 009452           66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVE  145 (534)
Q Consensus        66 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  145 (534)
                      ||+||+.|+.+++++|++.+.....      |+||||+|+..|+.+++++|++.+++.... |.+|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQ-DKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-B-STTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhccccccc-CCCCCCHHHHHHHcCCHH
Confidence            5666666666666666664422111      566666666666666666666666654333 566666666666666666


Q ss_pred             HHHHHHhcCCCc
Q 009452          146 VVKFLLEKGSTL  157 (534)
Q Consensus       146 ~v~~Ll~~~~~~  157 (534)
                      ++++|+++|+++
T Consensus        74 ~~~~Ll~~g~~~   85 (89)
T PF12796_consen   74 IVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHTTT-T
T ss_pred             HHHHHHHcCCCC
Confidence            666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.57  E-value=1.4e-15  Score=139.90  Aligned_cols=116  Identities=28%  Similarity=0.429  Sum_probs=89.0

Q ss_pred             ccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCc
Q 009452           88 SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKT  167 (534)
Q Consensus        88 ~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  167 (534)
                      .+.+..|..|++|||+||+.|+..+++.|+..++..+.. +....||||+|+..||.++|+.|++..+++ +..++.|.|
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~t-nmgddtplhlaaahghrdivqkll~~kadv-navnehgnt  102 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST-NMGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNT  102 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccc-cCCCCcchhhhhhcccHHHHHHHHHHhccc-chhhccCCC
Confidence            345666777888888888888888888888888776544 666678888888888888888888887776 556777888


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 009452          168 ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA  206 (534)
Q Consensus       168 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  206 (534)
                      |||+||..|...+.+-|+..|+..... +++|.|||..|
T Consensus       103 plhyacfwgydqiaedli~~ga~v~ic-nk~g~tpldka  140 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAAVNIC-NKKGMTPLDKA  140 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhccceeeec-ccCCCCchhhh
Confidence            888888888888888888877765544 77888887765

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.44  E-value=3.3e-12  Score=120.81  Aligned_cols=126  Identities=35%  Similarity=0.478  Sum_probs=84.2

Q ss_pred             cccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC-----HHHHHHHHhcCC--CchhhhhcCC
Q 009452           93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH-----VEVVKFLLEKGS--TLATIARSNG  165 (534)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~--~~~~~~~~~g  165 (534)
                      .+..+.+++|.++..+..+++++++..+.+. ...|..|.||||+|+..|+     .++++.|++.|+  +.....+..|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            3445666777777777777776666666666 4556677777777777776     677777777766  4445556667


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       166 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      .||||+|+..|+.++++.|++.++++... +..|.|+++.|+..++.++++.+++
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSR-NSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCccc-ccCCCcchhhhcccchHHHHHHHHh
Confidence            77777777777777777777766665544 5666677777777777666666666

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.41  E-value=2.4e-12  Score=121.80  Aligned_cols=124  Identities=35%  Similarity=0.461  Sum_probs=69.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCC-----HHHHHHHHhhCc--cccccCCCCCCcH
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGC-----LEVLKILMEALP--ELLMTFDSSNTTA  134 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~-----~~iv~~Ll~~~~--~~~~~~d~~g~tp  134 (534)
                      +.+++|.++..+..+++++++..+.  ..+.++..|.||||+|+..|+     .++++.|++.++  +.....|..|.||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tp  150 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGA--DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP  150 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCC--CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCch
Confidence            4555555555555555555555442  224455555555555555555     555555555555  3444445555555


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcC
Q 009452          135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE  188 (534)
Q Consensus       135 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~  188 (534)
                      ||+|+..|+.++++.|++.++++ ...+..|.|+++.|+..|+.++++.+++.+
T Consensus       151 l~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         151 LHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            55555555555555555555554 333555555555555555555555555543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.31  E-value=1.1e-11  Score=95.04  Aligned_cols=98  Identities=23%  Similarity=0.319  Sum_probs=54.3

Q ss_pred             HHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHH
Q 009452          101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEI  180 (534)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~i  180 (534)
                      +.+++++|.++-|+.....+-+.+..  ..|++|||+|+..|+.+++++|+..|+++ ..+|+.|.|||..|+..||.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHHH
Confidence            44555566666665555555333322  25566666666666666666666666655 4455556666666666666666


Q ss_pred             HHHHHhcCCCCcccCCCCCCcH
Q 009452          181 VKALLSKEPGIVLRNDKKGQTA  202 (534)
Q Consensus       181 v~~Ll~~~~~~~~~~d~~g~t~  202 (534)
                      |++|++.|++-... ..+|.+.
T Consensus        83 VklLL~~GAdrt~~-~PdG~~~  103 (117)
T KOG4214|consen   83 VKLLLQNGADRTIH-APDGTAL  103 (117)
T ss_pred             HHHHHHcCccccee-CCCchhH
Confidence            66666666554333 3444443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.28  E-value=2.4e-11  Score=93.05  Aligned_cols=90  Identities=20%  Similarity=0.295  Sum_probs=57.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHH
Q 009452           24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHI  103 (534)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~  103 (534)
                      +..+.|++++|.++.|+..+..+-+.+      .+ -.|.+|||+||..|..+++++|+..|+  +.+.+|+.|-|||-.
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn------~~-~ggR~plhyAAD~GQl~ilefli~iGA--~i~~kDKygITPLLs   73 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVN------EI-YGGRTPLHYAADYGQLSILEFLISIGA--NIQDKDKYGITPLLS   73 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHH------HH-hCCcccchHhhhcchHHHHHHHHHhcc--ccCCccccCCcHHHH
Confidence            345667777777777777776663321      11 256677777777777777777777663  344466667777777


Q ss_pred             HHHCCCHHHHHHHHhhCcc
Q 009452          104 AAKQGCLEVLKILMEALPE  122 (534)
Q Consensus       104 Aa~~g~~~iv~~Ll~~~~~  122 (534)
                      |+..||.++|++|++++++
T Consensus        74 AvwEGH~~cVklLL~~GAd   92 (117)
T KOG4214|consen   74 AVWEGHRDCVKLLLQNGAD   92 (117)
T ss_pred             HHHHhhHHHHHHHHHcCcc
Confidence            7777777777777766665

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.28  E-value=2.5e-11  Score=112.06  Aligned_cols=122  Identities=22%  Similarity=0.283  Sum_probs=99.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      -..||..++..|+.+-...||+.  ....+..|..|.|+|..|+..|+.+++++|++.+++++...+..+.||||+|+.+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            45788888888888888888875  2446778888888888888888888888888888888877788888888888888


Q ss_pred             CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHh
Q 009452          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS  186 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~  186 (534)
                      |+.++.++|++.|+.. ...+.-|+|+-.+|+.-|+.++|..+=+
T Consensus        90 Gn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            8888888888888876 6677788888888888888888876643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=1.4e-11  Score=122.12  Aligned_cols=116  Identities=27%  Similarity=0.317  Sum_probs=71.6

Q ss_pred             HHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHH
Q 009452          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK  182 (534)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~  182 (534)
                      -|+..|.+|+|+.++..-.+... .|.+|-|+||-|+-.||.+||++|++.|+++ +..|.+||||||+|+..+++.+++
T Consensus       556 DaaLeGEldlVq~~i~ev~DpSq-pNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDPSQ-PNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCCCC-CCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHHHH
Confidence            35566666666666655444332 3566666666666666666666666666665 456666666666666666666666


Q ss_pred             HHHhcCCCCcccCCCCCCcHHHHHH--hCCCHHHHHHHhh
Q 009452          183 ALLSKEPGIVLRNDKKGQTALHMAV--KGQSIELVDELVK  220 (534)
Q Consensus       183 ~Ll~~~~~~~~~~d~~g~t~Lh~A~--~~~~~~iv~~Ll~  220 (534)
                      .|++.|+.+....=.++.|+..-+-  +.|..++.+||..
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            6666666655554455666654432  3556666666654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.22  E-value=2.4e-11  Score=87.31  Aligned_cols=52  Identities=46%  Similarity=0.762  Sum_probs=20.9

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHH
Q 009452          132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL  184 (534)
Q Consensus       132 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~L  184 (534)
                      +||||+|+..|+.+++++|++++.++ +..|.+|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            44444444444444444444444443 22244444444444444444444444

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=3.5e-11  Score=119.39  Aligned_cols=119  Identities=28%  Similarity=0.280  Sum_probs=83.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHH
Q 009452           66 LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVE  145 (534)
Q Consensus        66 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  145 (534)
                      |.-|+..|.+|+|+..+...  .+....|..|.|+||-|+..||.+||++|++.+.+.+.. |.+||||||+|+++++..
T Consensus       554 LLDaaLeGEldlVq~~i~ev--~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~-DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEV--TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAA-DSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhh--cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCc-cCCCCchhhhhhhcCchH
Confidence            44467777777777777654  345556777777888777777778888877777776544 777888888888888888


Q ss_pred             HHHHHHhcCCCchhhhhcCCCcHHHHHH--HcCcHHHHHHHHhc
Q 009452          146 VVKFLLEKGSTLATIARSNGKTALHSAA--RNGHLEIVKALLSK  187 (534)
Q Consensus       146 ~v~~Ll~~~~~~~~~~~~~g~tpLh~A~--~~g~~~iv~~Ll~~  187 (534)
                      +++.|++.|+.+....-.++.|+..-+-  +.|..++.+||...
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            8888888777765555566777766553  45667777777543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.19  E-value=1.2e-10  Score=107.55  Aligned_cols=123  Identities=23%  Similarity=0.230  Sum_probs=109.3

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHc
Q 009452           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN  175 (534)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  175 (534)
                      .-..||.-++..|..+-+..|+.... ..+.+|..|.|||..|+..|+.++++.|++.|+|++..++..++||||+|+.+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr-~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVR-QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhh-hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            34678999999999999999998743 35567999999999999999999999999999999888889999999999999


Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      |+.++.+.|++.|+.... .+.-|+|+-.+|+--|+.+.|..+-.
T Consensus        90 Gn~dvcrllldaGa~~~~-vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYL-VNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CCchHHHHHHhccCcccc-ccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999999987654 47889999999999999988877654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.19  E-value=5.7e-11  Score=85.37  Aligned_cols=52  Identities=37%  Similarity=0.629  Sum_probs=21.9

Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHH
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL  150 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  150 (534)
                      .||||.|+..|+.+++++|++.+.++... |.+|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~-d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQ-DEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHccCHHHHHHH
Confidence            44444444444444444444444443333 44444444444444444444444

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.14  E-value=3.8e-11  Score=86.81  Aligned_cols=56  Identities=36%  Similarity=0.411  Sum_probs=22.9

Q ss_pred             HHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHH
Q 009452          184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA  240 (534)
Q Consensus       184 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~A  240 (534)
                      |+++++......|..|+||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            3445533344456666677777766666676666663 5666666666667766665

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.12  E-value=2.5e-10  Score=124.88  Aligned_cols=105  Identities=29%  Similarity=0.313  Sum_probs=79.4

Q ss_pred             cHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcH
Q 009452           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (534)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  178 (534)
                      +.|+.|+..|+.+.++.|++.++++.. .|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~-~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNC-RDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            357788888888888888888877644 4788888888888888888888888888887 56778888888888888888


Q ss_pred             HHHHHHHhc-------CCCCcccCCCCCCcHHHHH
Q 009452          179 EIVKALLSK-------EPGIVLRNDKKGQTALHMA  206 (534)
Q Consensus       179 ~iv~~Ll~~-------~~~~~~~~d~~g~t~Lh~A  206 (534)
                      +++++|+++       +++... .+..|.+++..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~-~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKP-DSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCc-cccCCCCccchh
Confidence            888888877       443332 245566665433

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.12  E-value=6.1e-11  Score=85.77  Aligned_cols=44  Identities=39%  Similarity=0.569  Sum_probs=14.2

Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHH
Q 009452          127 FDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS  171 (534)
Q Consensus       127 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~  171 (534)
                      .|..|.||||+||..|+.+++++|++.|+++ ..+|..|+||+|+
T Consensus        12 ~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~   55 (56)
T PF13857_consen   12 QDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHY   55 (56)
T ss_dssp             --TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHh
Confidence            3444444444444444444444444444443 3344444444444

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.10  E-value=3.2e-10  Score=124.12  Aligned_cols=105  Identities=23%  Similarity=0.299  Sum_probs=89.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCH
Q 009452           65 ALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV  144 (534)
Q Consensus        65 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  144 (534)
                      .|+.|+..|+.+.++.|++.+  .+.+.+|..|.||||+|+..|+.+++++|++.+++... .|..|.||||+|+..|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~G--adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~-~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGG--ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcH
Confidence            588999999999999999987  44667889999999999999999999999999988654 589999999999999999


Q ss_pred             HHHHHHHhc-------CCCchhhhhcCCCcHHHHHH
Q 009452          145 EVVKFLLEK-------GSTLATIARSNGKTALHSAA  173 (534)
Q Consensus       145 ~~v~~Ll~~-------~~~~~~~~~~~g~tpLh~A~  173 (534)
                      +++++|+++       +++. ...+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCC-CccccCCCCccchhh
Confidence            999999998       5554 345666777766543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.78  E-value=1.8e-08  Score=101.06  Aligned_cols=119  Identities=22%  Similarity=0.217  Sum_probs=68.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHH
Q 009452           27 LQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAK  106 (534)
Q Consensus        27 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~  106 (534)
                      +..|+..+++-.++.....|++      +-.++.+..|.||+|+..|+-++|+|++++++++.+...+..|.|+||-|+.
T Consensus       870 il~av~~~D~~klqE~h~~gg~------ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS------LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc------eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            4455555555544444444432      2233455556666666666666666666666555555556666666666666


Q ss_pred             CCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHh
Q 009452          107 QGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE  152 (534)
Q Consensus       107 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  152 (534)
                      .++-.+.++|++.++.+... |..|.||-.-|-..|+.++.-||-.
T Consensus       944 ~~~r~vc~~lvdagasl~kt-d~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKT-DSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             hcchHHHHHHHhcchhheec-ccCCCChHHHHHhcCCchHHHHHhh
Confidence            66666666666666555443 6666666666666666665555543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.62  E-value=1.2e-07  Score=95.34  Aligned_cols=95  Identities=32%  Similarity=0.426  Sum_probs=54.8

Q ss_pred             cccccCCCcHHHHHHHCCCHHHHHHHHhhCcc-ccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHH
Q 009452           91 GIKARNGYDAFHIAAKQGCLEVLKILMEALPE-LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL  169 (534)
Q Consensus        91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  169 (534)
                      -+++.+..|.||+|+..|+-++|++|++++|. +....|+.|.|+||.|+..++..+.++|++.|+++ ...|..|.||-
T Consensus       893 l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp~  971 (1004)
T KOG0782|consen  893 LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASL-RKTDSKGKTPQ  971 (1004)
T ss_pred             EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh-eecccCCCChH
Confidence            34555555666666666666666666666553 33334555666666666666666666666666555 44555566666


Q ss_pred             HHHHHcCcHHHHHHHHh
Q 009452          170 HSAARNGHLEIVKALLS  186 (534)
Q Consensus       170 h~A~~~g~~~iv~~Ll~  186 (534)
                      ..|-+.|+.++..||-.
T Consensus       972 eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  972 ERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHhcCCchHHHHHhh
Confidence            66666666665555543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.56  E-value=5.5e-08  Score=101.85  Aligned_cols=84  Identities=20%  Similarity=0.242  Sum_probs=52.2

Q ss_pred             HHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccc-cCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCC
Q 009452           54 MLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA-RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT  132 (534)
Q Consensus        54 ~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~  132 (534)
                      +.+.+|..|.|+||+|+..|..+++++||++|  .++..+| +.|+||||-|+..|++|++-.|+.++..+-. .|.+|.
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhG--idv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i-~Dkegl  120 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHG--IDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRI-KDKEGL  120 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcC--ceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEE-ecccCC
Confidence            35566666777777777777667777777665  3333333 3466777777777777777777766655433 366677


Q ss_pred             cHHHHHHh
Q 009452          133 TALHTASS  140 (534)
Q Consensus       133 tpLh~A~~  140 (534)
                      +||..-++
T Consensus       121 splq~~~r  128 (1267)
T KOG0783|consen  121 SPLQFLSR  128 (1267)
T ss_pred             CHHHHHhh
Confidence            77665554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.47  E-value=3.4e-07  Score=90.88  Aligned_cols=78  Identities=31%  Similarity=0.494  Sum_probs=36.8

Q ss_pred             HHHHHhCCCHHHHHHHhhcCCccccccC-CCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhH
Q 009452          203 LHMAVKGQSIELVDELVKVEPVIINMVD-AKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEI  279 (534)
Q Consensus       203 Lh~A~~~~~~~iv~~Ll~~~~~~in~~d-~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i  279 (534)
                      ||..++.|+.+..-.|+. .+++.|..+ ..|+||||.|++.|+.  .++|..+|+|++..|.+|.||+++|...||-++
T Consensus       137 LhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            444444444444444443 233333333 3445555555555543  344445555555555555555555555555444


Q ss_pred             HH
Q 009452          280 GV  281 (534)
Q Consensus       280 ~~  281 (534)
                      .+
T Consensus       216 ae  217 (669)
T KOG0818|consen  216 AE  217 (669)
T ss_pred             HH
Confidence            33

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.45  E-value=2e-07  Score=97.78  Aligned_cols=90  Identities=29%  Similarity=0.409  Sum_probs=48.3

Q ss_pred             hhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCC
Q 009452          118 EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK  197 (534)
Q Consensus       118 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~  197 (534)
                      ..+.++.+..|..|+|+||+|+..|..+++++|+++|.++.-...+.|+||||.|+..|+.|++..|+.+|..+.. .|+
T Consensus        39 k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i-~Dk  117 (1267)
T KOG0783|consen   39 KSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRI-KDK  117 (1267)
T ss_pred             HhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEE-ecc
Confidence            3334444455555666666666666666666666665555322223456666666666666666666655544332 355


Q ss_pred             CCCcHHHHHHh
Q 009452          198 KGQTALHMAVK  208 (534)
Q Consensus       198 ~g~t~Lh~A~~  208 (534)
                      +|..||..-++
T Consensus       118 eglsplq~~~r  128 (1267)
T KOG0783|consen  118 EGLSPLQFLSR  128 (1267)
T ss_pred             cCCCHHHHHhh
Confidence            55555554443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.38  E-value=5.1e-06  Score=82.74  Aligned_cols=152  Identities=18%  Similarity=0.247  Sum_probs=102.0

Q ss_pred             CCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHH-------HcC----------C---HHHHHHHHHhCCc-ccccc
Q 009452           34 GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAA-------EYG----------Y---VDMVREMIRYHDT-SLAGI   92 (534)
Q Consensus        34 g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa-------~~g----------~---~~iv~~Ll~~~~~-~~~~~   92 (534)
                      .++..|+.|-...-++.+-.+++..|..|-+-+-.-+       ..|          |   .+.++.=...-.- .-...
T Consensus        43 rhIS~vrhLR~s~W~pt~l~~V~tLn~~gaNsIWEh~Lld~st~~sg~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~  122 (669)
T KOG0818|consen   43 RHISQVRHLRHTPWPPTLLQMVETLNNNGANSIWEHSLLDPATIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPC  122 (669)
T ss_pred             chHHHHHHhccCCCCHHHHHHHHHHHhcCcchhhhhhccCchhhhcccCCCCCcCCCCccHHHHHHHHHHheeeeccCCC
Confidence            4677777777655566666666776766654332211       112          1   1222211111000 01233


Q ss_pred             cccCCCc------HHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCC
Q 009452           93 KARNGYD------AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK  166 (534)
Q Consensus        93 ~~~~g~t------~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  166 (534)
                      +|.+|-+      -||..++.|+.+..-.|+..|++.+..-.+.|.||||.|+..|+.--+++|+-.|+++ ...|.+|.
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~Gm  201 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGM  201 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCC
Confidence            4555544      5788888899888888888888877776778889999999999988888888888887 56788899


Q ss_pred             cHHHHHHHcCcHHHHHHHHh
Q 009452          167 TALHSAARNGHLEIVKALLS  186 (534)
Q Consensus       167 tpLh~A~~~g~~~iv~~Ll~  186 (534)
                      ||+.+|-..||.++.+.|++
T Consensus       202 tP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHH
Confidence            99999888888887776665

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.37  E-value=0.00018  Score=77.10  Aligned_cols=121  Identities=26%  Similarity=0.281  Sum_probs=70.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCc--ccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           64 TALYVAAEYGYVDMVREMIRYHDT--SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      --...|++.|+.-.|+..++....  .+.++.|.-|+++|+.|+.+.+.++.++|+++....        ..+|.+|+..
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~   98 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAV   98 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHH
Confidence            334556666666666666665433  344555666666666666666666666666653221        2356666666


Q ss_pred             CCHHHHHHHHhcCCCchh---------hhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCc
Q 009452          142 GHVEVVKFLLEKGSTLAT---------IARSNGKTALHSAARNGHLEIVKALLSKEPGIV  192 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~---------~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  192 (534)
                      |..+.|+.++.+......         ..-..+.|||..||..+++||++.|++++..+.
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            666666666665322100         111235677777777777777777777766554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.32  E-value=6.8e-07  Score=55.15  Aligned_cols=26  Identities=50%  Similarity=0.871  Sum_probs=12.7

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCC
Q 009452          131 NTTALHTASSQGHVEVVKFLLEKGST  156 (534)
Q Consensus       131 g~tpLh~A~~~g~~~~v~~Ll~~~~~  156 (534)
                      |+||||+||+.|+.|++++|+++|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            44455555555555555555544444

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.29  E-value=8.2e-07  Score=87.90  Aligned_cols=90  Identities=36%  Similarity=0.354  Sum_probs=47.6

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  176 (534)
                      +..++.+|++.|.+..++.+.-.+.++.. .|.+.+|+||.|+..|+.+++++|++........+|..|+|||.-|...+
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~-~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLET-KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccc-cccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            34455555555555555555554444332 25555555555555555555555555533333445555555555555555


Q ss_pred             cHHHHHHHHhc
Q 009452          177 HLEIVKALLSK  187 (534)
Q Consensus       177 ~~~iv~~Ll~~  187 (534)
                      |.+++++|-+.
T Consensus       585 h~~v~k~L~~~  595 (622)
T KOG0506|consen  585 HKEVVKLLEEA  595 (622)
T ss_pred             cHHHHHHHHHH
Confidence            55555555443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.29  E-value=7.8e-07  Score=88.02  Aligned_cols=95  Identities=27%  Similarity=0.236  Sum_probs=83.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009452           58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHT  137 (534)
Q Consensus        58 ~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  137 (534)
                      +..++...+.+|+..|++..++.+.-.+  .+.+.+|.+.+|+||.||..|+++++++|++........+|..|+|||.-
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g--~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQG--MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhc--ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            3455677899999999999998877655  56788999999999999999999999999998777777789999999999


Q ss_pred             HHhcCCHHHHHHHHhcC
Q 009452          138 ASSQGHVEVVKFLLEKG  154 (534)
Q Consensus       138 A~~~g~~~~v~~Ll~~~  154 (534)
                      |..-+|.+++++|-+.-
T Consensus       580 A~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hHhcCcHHHHHHHHHHh
Confidence            99999999999998763

>PF13606 Ank_3: Ankyrin repeat

Probab=98.28  E-value=9.7e-07  Score=54.45  Aligned_cols=29  Identities=52%  Similarity=0.715  Sum_probs=22.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCc
Q 009452          164 NGKTALHSAARNGHLEIVKALLSKEPGIV  192 (534)
Q Consensus       164 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  192 (534)
                      +|+||||+|++.|+.|++++|++++++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47788888888888888888888777653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.27  E-value=2.5e-06  Score=86.08  Aligned_cols=89  Identities=20%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHH
Q 009452           26 PLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAA  105 (534)
Q Consensus        26 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa  105 (534)
                      |+|+++...+.+-....+....    ...++..|..|.||||+|+..|+.+.++.|+..+  .+..++|..|++|||.|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~----~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~--Adv~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKV----SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG--ADVSIKNNEGWSPLHEAV   96 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhh----hceeccccCCCCccHHHHHHhcCHHHHHHHHhcC--CCccccccccccHHHHHH
Confidence            4666666666665555554321    2345566666666666666666666666666655  334456666666666666


Q ss_pred             HCCCHHHHHHHHhhC
Q 009452          106 KQGCLEVLKILMEAL  120 (534)
Q Consensus       106 ~~g~~~iv~~Ll~~~  120 (534)
                      ..|+.+++..++.+.
T Consensus        97 ~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   97 STGNEQIITEVLRHL  111 (560)
T ss_pred             HcCCHHHHHHHHHHh
Confidence            666666666666553

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.24  E-value=1.9e-06  Score=86.85  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=85.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (534)
                      -|||+++...+.+-...++.......+..+|..|.||||+|+..|+.+.++.|+..+++.... |..|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~k-N~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIK-NNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccc-ccccccHHHHHHHcCC
Confidence            359999998888766665554344566778899999999999999999999999999886654 9999999999999999


Q ss_pred             HHHHHHHHhcCCCchhhhhcCCCcHHHHHH
Q 009452          144 VEVVKFLLEKGSTLATIARSNGKTALHSAA  173 (534)
Q Consensus       144 ~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~  173 (534)
                      .+++..++.+........-..+...|..+.
T Consensus       101 ~q~i~~vlr~~~~q~~~~~~~~~p~ll~~l  130 (560)
T KOG0522|consen  101 EQIITEVLRHLKYQAWEKWERRLPRLLAKL  130 (560)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhcchHHHHHH
Confidence            999888888755443444445555555443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.18  E-value=3e-06  Score=85.91  Aligned_cols=89  Identities=31%  Similarity=0.335  Sum_probs=74.7

Q ss_pred             HHHHHhCCCHHHHHHHhhcCC---ccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCch
Q 009452          203 LHMAVKGQSIELVDELVKVEP---VIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHS  277 (534)
Q Consensus       203 Lh~A~~~~~~~iv~~Ll~~~~---~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~  277 (534)
                      |.-|+....+..+..|+.++.   .+-...+.+|+|+||+||..|++  ..||+-+|+|+..+|..|+|||.+|.+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            456777777888888887432   12234567889999999999997  6899999999999999999999999999999


Q ss_pred             hHHHHHHhcCCCCC
Q 009452          278 EIGVILKEHGVPCG  291 (534)
Q Consensus       278 ~i~~~L~~~g~~~~  291 (534)
                      +++..|+++|.+..
T Consensus       708 ec~d~llq~gcp~e  721 (749)
T KOG0705|consen  708 ECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHcCCCcc
Confidence            99999999998753

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.17  E-value=5.5e-06  Score=88.35  Aligned_cols=130  Identities=15%  Similarity=0.209  Sum_probs=103.5

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      -....+.--.-.|+..|+.-.|+..++......  --++.+|.-|.++|+.|+.+.+.+++++|++....         -
T Consensus        20 ~~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~--lninc~d~lGr~al~iai~nenle~~eLLl~~~~~---------~   88 (822)
T KOG3609|consen   20 ADLNEGEKGFLLAHENGDVPLVAKALEYKAVSK--LNINCRDPLGRLALHIAIDNENLELQELLLDTSSE---------E   88 (822)
T ss_pred             cccchhhHHHHHHHHcCChHHHHHHHHhccccc--cchhccChHhhhceecccccccHHHHHHHhcCccc---------c
Confidence            334556667789999999999999999765422  23577888899999999999999999999986411         1


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccc---------cccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCch
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPEL---------LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA  158 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  158 (534)
                      ..+|-+|+..|..++|+.++.+....         ....=..+.|||.+||..++.|+++.|+++|+++.
T Consensus        89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            46899999999999999999874322         11112346799999999999999999999998874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.07  E-value=4.7e-06  Score=52.80  Aligned_cols=27  Identities=41%  Similarity=0.772  Sum_probs=12.4

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCc
Q 009452          131 NTTALHTASSQGHVEVVKFLLEKGSTL  157 (534)
Q Consensus       131 g~tpLh~A~~~g~~~~v~~Ll~~~~~~  157 (534)
                      |.||||+|+..|+.+++++|+++|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            444444444444444444444444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.03  E-value=1.2e-05  Score=81.59  Aligned_cols=91  Identities=22%  Similarity=0.246  Sum_probs=61.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccc--ccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC
Q 009452           66 LYVAAEYGYVDMVREMIRYHDTSL--AGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (534)
Q Consensus        66 Lh~Aa~~g~~~iv~~Ll~~~~~~~--~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (534)
                      |.-|....+...+-.||.++....  ....+.+|.|+||+||..|++.+.++|+-++.+. ..+|..|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            455666666666666777664332  2334556678888888888887777777555543 4457788888888888888


Q ss_pred             HHHHHHHHhcCCCc
Q 009452          144 VEVVKFLLEKGSTL  157 (534)
Q Consensus       144 ~~~v~~Ll~~~~~~  157 (534)
                      .+++..|+.+|...
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            88888888877654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.01  E-value=8.6e-06  Score=51.57  Aligned_cols=30  Identities=47%  Similarity=0.649  Sum_probs=20.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcc
Q 009452          164 NGKTALHSAARNGHLEIVKALLSKEPGIVL  193 (534)
Q Consensus       164 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~  193 (534)
                      +|.||||+|+..|+.+++++|+++++++..
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            466777777777777777777777766543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.89  E-value=9.3e-06  Score=88.45  Aligned_cols=129  Identities=26%  Similarity=0.224  Sum_probs=78.3

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHH
Q 009452           57 KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALH  136 (534)
Q Consensus        57 ~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  136 (534)
                      ..+..|.+.||+++..++.-+++.+++. ........+.+|...+|+ |..++.+.+.+++.....-...+|..|+||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~-~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEW-AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcc-cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            3445567777777777777777777764 122333445566666666 33455566666665555555566777777777


Q ss_pred             HHHhcCCHHHHHHHHhcCCCchhhhh-----cCCCcHHHHHHHcCcHHHHHHHHhc
Q 009452          137 TASSQGHVEVVKFLLEKGSTLATIAR-----SNGKTALHSAARNGHLEIVKALLSK  187 (534)
Q Consensus       137 ~A~~~g~~~~v~~Ll~~~~~~~~~~~-----~~g~tpLh~A~~~g~~~iv~~Ll~~  187 (534)
                      +|+..|+..++..|++.|++.....|     ..|.|+-..|-.+|+..+.-+|-+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            77777777777777766555432222     2366666666666666666555544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.79  E-value=2.8e-05  Score=84.81  Aligned_cols=131  Identities=18%  Similarity=0.126  Sum_probs=97.3

Q ss_pred             cccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcH
Q 009452           89 LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA  168 (534)
Q Consensus        89 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  168 (534)
                      ........|.+.+|+++..+....++.+++.........|.+|.-.+|+ |..++++..-+|+........++|..|+||
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            3444566789999999999999999999986333334457777778888 455566666666655444447889999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcccCC-----CCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          169 LHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       169 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d-----~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      ||+|+.+|+..++..|.+.+.+.....|     ..|.|+-.+|-.+|+..+--+|-+
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            9999999999999999987766544333     447777888888888777777665

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.64  E-value=4.6e-05  Score=83.67  Aligned_cols=87  Identities=29%  Similarity=0.395  Sum_probs=76.8

Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhc
Q 009452          197 KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKT  274 (534)
Q Consensus       197 ~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~  274 (534)
                      ..|.|+||.|+..+..-++++|+. .++++|..|..|+||||.+...|+.  ..+++.+|++.++.+.+|.+|+++|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            467899999999999999999999 5667999999999999999999986  6888889999999999999999999877


Q ss_pred             CchhHHHHHH
Q 009452          275 GHSEIGVILK  284 (534)
Q Consensus       275 ~~~~i~~~L~  284 (534)
                      .+.+++-++.
T Consensus       733 ~~~d~~~l~~  742 (785)
T KOG0521|consen  733 ANADIVLLLR  742 (785)
T ss_pred             ccccHHHHHh
Confidence            6666655543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.61  E-value=8.5e-05  Score=81.62  Aligned_cols=89  Identities=28%  Similarity=0.412  Sum_probs=69.3

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHh
Q 009452          129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK  208 (534)
Q Consensus       129 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  208 (534)
                      ..|.|+||.|+..|..-++++|++.|+++ +..|..|.+|+|.+...|+...+..|++++++.... +.+|.+++++|.+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~-~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPNAF-DPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccccccccc-CccCcchhhHHhh
Confidence            45778888888888888888888888885 677888888888888888888888888888776554 7888888888877


Q ss_pred             CCCHHHHHHHh
Q 009452          209 GQSIELVDELV  219 (534)
Q Consensus       209 ~~~~~iv~~Ll  219 (534)
                      ..+.+++-++.
T Consensus       732 ~~~~d~~~l~~  742 (785)
T KOG0521|consen  732 AANADIVLLLR  742 (785)
T ss_pred             hccccHHHHHh
Confidence            65555544443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.52  E-value=0.00021  Score=69.33  Aligned_cols=56  Identities=25%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCcc
Q 009452           65 ALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE  122 (534)
Q Consensus        65 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~  122 (534)
                      -|..||+.|+.+.|++|++.|  .+++..|....+||.+|+..||.+++++|+++|+-
T Consensus        39 elceacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            366677777777777777654  44555666666777777777777777777766653

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.40  E-value=0.00029  Score=68.36  Aligned_cols=67  Identities=27%  Similarity=0.368  Sum_probs=43.0

Q ss_pred             HHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcH
Q 009452          100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA  168 (534)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  168 (534)
                      -|..||+.|..+.+++|++.|..++ .+|....+||.+|+..||.++|++|+++|+-. ....-+|..+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh
Confidence            4667777777777777777655543 34666777777777777777777777777654 2222345444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.25  E-value=0.00066  Score=59.99  Aligned_cols=61  Identities=26%  Similarity=0.368  Sum_probs=32.5

Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhc
Q 009452          127 FDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK  187 (534)
Q Consensus       127 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~  187 (534)
                      +|..|+|||+.|+..|..+.+.+|+.+|.......|..|.+.+.+|-+.|..++++.|.+.
T Consensus         8 rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    8 RDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             hhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            3555555555555555555555555555333344555555555555555555555555544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.14  E-value=0.00094  Score=59.02  Aligned_cols=68  Identities=22%  Similarity=0.215  Sum_probs=55.8

Q ss_pred             cccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 009452           89 LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST  156 (534)
Q Consensus        89 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  156 (534)
                      +++.+|..|+|+++.|+..|+.+.+.+|+.++.......|..|.+.+.+|-..|+.++++.|.+...+
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            45667888888888888888888888888888666777788888888888888888888888887433

>smart00248 ANK ankyrin repeats

Probab=95.56  E-value=0.021  Score=33.40  Aligned_cols=24  Identities=63%  Similarity=0.886  Sum_probs=11.0

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcC
Q 009452          165 GKTALHSAARNGHLEIVKALLSKE  188 (534)
Q Consensus       165 g~tpLh~A~~~g~~~iv~~Ll~~~  188 (534)
                      |.||+|+|+..|+.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.53  E-value=0.022  Score=33.33  Aligned_cols=26  Identities=50%  Similarity=0.806  Sum_probs=16.1

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCC
Q 009452          131 NTTALHTASSQGHVEVVKFLLEKGST  156 (534)
Q Consensus       131 g~tpLh~A~~~g~~~~v~~Ll~~~~~  156 (534)
                      |.||+|+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45666666666666666666666543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.33  E-value=0.22  Score=44.29  Aligned_cols=135  Identities=16%  Similarity=0.239  Sum_probs=79.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (534)
                      -.|.-|+..+...++++.-+.....     -...++.+-.||+..+.|+|+++-+.-.-      .+-.+....|....+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccc
Confidence            4566677777777777665542111     12455677777777777877777543221      112344556666666


Q ss_pred             HHHHH----HHHhcCC-----CchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHH
Q 009452          144 VEVVK----FLLEKGS-----TLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL  214 (534)
Q Consensus       144 ~~~v~----~Ll~~~~-----~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i  214 (534)
                      .++..    ++.++..     ++...-    ..-|..|+..|-.+.+...+++|.+...       ++|..|++.++-.+
T Consensus       117 lsLyslGY~l~~~~~~~~~~~d~~~ll----~~hl~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkI  185 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMSEHNEDPTSLL----TQHLEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKI  185 (192)
T ss_pred             hhHHHHHHHHHHhhcccccccCHHHHH----HHHHHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHH
Confidence            55421    2222211     111110    1235678888888888888888876542       57888888888888


Q ss_pred             HHHHhh
Q 009452          215 VDELVK  220 (534)
Q Consensus       215 v~~Ll~  220 (534)
                      +.+++.
T Consensus       186 L~yfi~  191 (192)
T PF03158_consen  186 LDYFIR  191 (192)
T ss_pred             HHHhhc
Confidence            877764

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.72  E-value=0.27  Score=43.80  Aligned_cols=137  Identities=19%  Similarity=0.181  Sum_probs=87.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHH
Q 009452           26 PLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAA  105 (534)
Q Consensus        26 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa  105 (534)
                      .|..|+..+-+.++++.-+...         ..-...++....||+..+.|+|+|+=..-     .+  .+-.+-+..|.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~---------~~~~~~q~LFElAC~~qkydiV~WI~qnL-----~i--~~~~~iFdIA~  112 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLE---------NERYLNQELFELACEEQKYDIVKWIGQNL-----HI--YNPEDIFDIAF  112 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhh---------cchhHHHHHHHHHHHHccccHHHHHhhcc-----CC--CCchhhhhhhh
Confidence            4667888888888877766432         11235678888899999999998884421     11  22345677788


Q ss_pred             HCCCHHHHH----HHHhhCccccccCCC--CCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHH
Q 009452          106 KQGCLEVLK----ILMEALPELLMTFDS--SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE  179 (534)
Q Consensus       106 ~~g~~~iv~----~Ll~~~~~~~~~~d~--~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  179 (534)
                      ..++.++..    .+.+....- ...|.  --..-|..|+..|-.+.+...++.|.+.       ..+.|..|+..++..
T Consensus       113 ~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~-------~~~vls~Av~ynhRk  184 (192)
T PF03158_consen  113 AKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-------DIIVLSQAVKYNHRK  184 (192)
T ss_pred             hccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-------cHHHHHHHHHhhHHH
Confidence            887777632    222221110 00000  0012357788889999888888888765       127888899998888


Q ss_pred             HHHHHHh
Q 009452          180 IVKALLS  186 (534)
Q Consensus       180 iv~~Ll~  186 (534)
                      ++.+++.
T Consensus       185 IL~yfi~  191 (192)
T PF03158_consen  185 ILDYFIR  191 (192)
T ss_pred             HHHHhhc
Confidence            8888764

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.39  E-value=0.068  Score=54.35  Aligned_cols=63  Identities=22%  Similarity=0.159  Sum_probs=45.9

Q ss_pred             HHHHHHHHhcCCCchh-----hhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 009452          144 VEVVKFLLEKGSTLAT-----IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (534)
Q Consensus       144 ~~~v~~Ll~~~~~~~~-----~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (534)
                      .+.+++|.+++.+.+.     ..+..-.|+||+|+..|.-++|.+||+.++|+... |..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~k-d~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTK-DGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhc-ccCCCCcccccc
Confidence            5567777777665522     12334568889999888888888888888776544 888889988876

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.02  E-value=0.14  Score=52.08  Aligned_cols=67  Identities=16%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             HHHHHHHHhcCCCCcccC-----CCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH
Q 009452          178 LEIVKALLSKEPGIVLRN-----DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (534)
Q Consensus       178 ~~iv~~Ll~~~~~~~~~~-----d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~  246 (534)
                      .+.+++|.+.+.+.+...     +..--|+||+|+..|.-+++.+|++. +.++..+|..|.||..+++ +..+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~-nkdV  475 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSA-NKDV  475 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccc-cHHH
Confidence            566777777776654432     34467999999999999999999994 5899999999999999998 4444

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.49  E-value=1.4  Score=40.67  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=13.0

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCC
Q 009452          164 NGKTALHSAARNGHLEIVKALLSKEP  189 (534)
Q Consensus       164 ~g~tpLh~A~~~g~~~iv~~Ll~~~~  189 (534)
                      .|.|-|.-|.++++.+++..|+++|+
T Consensus       253 SGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  253 SGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            34455555555555555555555443

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.37  E-value=1.1  Score=41.38  Aligned_cols=123  Identities=24%  Similarity=0.195  Sum_probs=72.7

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHH
Q 009452          135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL  214 (534)
Q Consensus       135 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i  214 (534)
                      |.-|+...+.+-+.-++....+        -.+++.+|+.++..+++.+|+..-.-          |.=.+|-......-
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~f----------t~~dv~~~~~~~yd  218 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNF----------TKQDVASMEKELYD  218 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcce----------ecchhhhcCcchhh
Confidence            4556666666666655544322        24577788888888888888865321          01111222223334


Q ss_pred             HHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhcCCChHh---hhccCCcHHHHHHhcCchhHHHHHHhcCCCCC
Q 009452          215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAV---INKSRETALDTAEKTGHSEIGVILKEHGVPCG  291 (534)
Q Consensus       215 v~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~~~~~---~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~  291 (534)
                      +++++..+++..        -.|         +.++...-+++|.   .-+.|.|.||-|.+.++.+++.+|+++|+-..
T Consensus       219 ieY~LS~h~a~~--------kvL---------~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  219 IEYLLSEHSASY--------KVL---------EYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             HHHHHhhcCCcH--------HHH---------HHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcccc
Confidence            566665443311        111         2222222344444   34679999999999999999999999998654


Q ss_pred             C
Q 009452          292 K  292 (534)
Q Consensus       292 ~  292 (534)
                      +
T Consensus       282 k  282 (284)
T PF06128_consen  282 K  282 (284)
T ss_pred             C
Confidence            3

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.14  E-value=1.8  Score=32.99  Aligned_cols=48  Identities=17%  Similarity=0.202  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009452          399 IFIIFDSIALFISLAVVIVQTSVVVIERKAKKQMMAVINKLMWLACIMISVAFLALSYIVV  459 (534)
Q Consensus       399 ~f~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~~  459 (534)
                      +++++|.+||..|+....+-+..+|.+...+             +..+|.++|..|+.+.+
T Consensus        15 awi~f~waafg~s~~m~~~gi~~lPVD~w~K-------------Gy~~MG~lfltgSt~tL   62 (95)
T COG4298          15 AWIMFNWAAFGASYFMLGLGIWLLPVDLWTK-------------GYWAMGILFLTGSTVTL   62 (95)
T ss_pred             hhHhHHHHHHHHHHHHHHHHhheechHHHHH-------------HHHHHHHHHHhcchhhh
Confidence            3566699999999988887777777665543             23367777877766555

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=86.29  E-value=27  Score=34.71  Aligned_cols=229  Identities=10%  Similarity=0.067  Sum_probs=138.0

Q ss_pred             HHHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc-ccc
Q 009452           12 KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDT-SLA   90 (534)
Q Consensus        12 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~-~~~   90 (534)
                      .++..-..|..|.-.|..+.+.++.+....+++.-.+ +..  --..|..|+-.+......+..+-...+++.-.+ ...
T Consensus        10 ~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~-~~~--~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~   86 (322)
T cd07920          10 GHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILP-HVV--ELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVR   86 (322)
T ss_pred             cchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHH-hHH--HHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4455667888999999999999999998888886322 222  234567899999988988887766655553211 111


Q ss_pred             cccccCCCcHHHHHHHCCCHHHHHHHHhhC-c-cccccCCCCCCcHHHHHHhcCCHHHHHHHHhc--CCCchhhhhcCCC
Q 009452           91 GIKARNGYDAFHIAAKQGCLEVLKILMEAL-P-ELLMTFDSSNTTALHTASSQGHVEVVKFLLEK--GSTLATIARSNGK  166 (534)
Q Consensus        91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~-~-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~  166 (534)
                      -..+..|.-.+--+...+..+....+++.- + -.....|..|...+..+...+..+..+.+++.  +.-..-..+..|.
T Consensus        87 l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~  166 (322)
T cd07920          87 LSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGC  166 (322)
T ss_pred             HcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            235666776776666666544443333321 1 11223477888888888777776666655543  1111112345666


Q ss_pred             cHHHHHHHcCcHH----HHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcC-Ccc-ccccCCCCCcHHHHH
Q 009452          167 TALHSAARNGHLE----IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVE-PVI-INMVDAKGNSALHIA  240 (534)
Q Consensus       167 tpLh~A~~~g~~~----iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~-~~~-in~~d~~G~T~Lh~A  240 (534)
                      ..+.........+    +++.|......  ...|..|...+..+.+.+..+..+.+++.- +.. --..++.|...+..+
T Consensus       167 ~vvq~~l~~~~~~~~~~l~~~l~~~~~~--L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~  244 (322)
T cd07920         167 RVIQRCLEHCSEEQREPLLEEILEHALE--LVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKC  244 (322)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHH--HhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence            6666666655433    34444433222  234788888888888888766555555421 111 124667787777777


Q ss_pred             HHcCc
Q 009452          241 TRKGR  245 (534)
Q Consensus       241 a~~~~  245 (534)
                      ...+.
T Consensus       245 l~~~~  249 (322)
T cd07920         245 LKHAS  249 (322)
T ss_pred             HHHCC
Confidence            76654

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.10  E-value=1.4  Score=33.66  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=9.2

Q ss_pred             HHHHHHhcCCHHHHHHHHhc
Q 009452          134 ALHTASSQGHVEVVKFLLEK  153 (534)
Q Consensus       134 pLh~A~~~g~~~~v~~Ll~~  153 (534)
                      .+..|+...+-+++++|++.
T Consensus        35 ~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   35 CLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhhHHHHHHHHHh
Confidence            34444444444444444443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.01  E-value=1.3  Score=33.71  Aligned_cols=47  Identities=13%  Similarity=0.114  Sum_probs=25.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 009452           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY   84 (534)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~   84 (534)
                      ..+..|+..|+.|+++.+++.+..             ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            345566666666666665543311             02345566666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	534
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-14
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-18
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-04
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-14
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-11
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-13
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-11
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-10
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-10
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-08
1uoh_A	226	Human Gankyrin Length = 226		1e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-09
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-09
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		7e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		8e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		9e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		7e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-06
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-06
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		5e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		7e-06
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		9e-06
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		4e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-05
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		5e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-05
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		5e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		6e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		9e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		6e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		9e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
           NG    H+AA+ G LEV+K+L+EA  ++    D +  T LH A+  GH+EVVK LLE G+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 156 TLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV 215
            +    + NG+T LH AARNGHLE+VK LL     +  + DK G+T LH+A +   +E+V
Sbjct: 60  DVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117
Query: 216 DELVK 220
             L++
Sbjct: 118 KLLLE 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           NG+T LH AARNGHLE+VK LL     +  + DK G+T LH+A +   +E+V  L++   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 224 VIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 281
             +N  D  G + LH+A R G ++  KLL   G D    +K+  T L  A + GH E+  
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 282 ILKEHG 287
           +L E G
Sbjct: 119 LLLEAG 124

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 137/309 (44%), Gaps = 45/309 (14%)
Query: 13  KMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY 72
           K K    AK D TPL    R G   +V  ++ +  +  L         +G T L++AA  
Sbjct: 70  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL------ATTAGHTPLHIAARE 123
Query: 73  GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALP--------- 121
           G+V+ V  ++    +       + G+   H+AAK G + V ++L+E  A P         
Sbjct: 124 GHVETVLALLEKEASQ--ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181
Query: 122 --------------ELLMTFDSS-------NTTALHTASSQGHVEVVKFLLEKGSTLATI 160
                         +LL+    S         T LH A+ Q  VEV + LL+ G + A  
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANA 240
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
               G T LH AA+ GH E+V  LLSK+    L N K G T LH+  +   + + D L+K
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVADVLIK 299
Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSE 278
              V+++     G + LH+A+  G ++  K L  +  D     K   + L  A + GH++
Sbjct: 300 -HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358
Query: 279 IGVILKEHG 287
           I  +L ++G
Sbjct: 359 IVTLLLKNG 367

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
           NG    H+AA+ G LEV+K+L+EA  ++    D +  T LH A+  GH+EVVK LLE G+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 156 TLATIARSNGKTALHSAARNGHLEIVKALL 185
            +    + NG+T LH AARNGHLE+VK LL
Sbjct: 60  DVNAKDK-NGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
           T LH A+  GH+EVVK LLE G+ +    + NG+T LH AARNGHLE+VK LL     + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVK 220
            + DK G+T LH+A +   +E+V  L++
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVD 256
           G+T LH+A +   +E+V  L++     +N  D  G + LH+A R G ++  KLL   G D
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 257 KAVINKSRETALDTAEKTGHSEIGVILKEHG 287
               +K+  T L  A + GH E+  +L E G
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 5/151 (3%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           L  AA  G  D VR  I   + +    K ++GY   H+AA++G LE++++L++A  + + 
Sbjct: 18  LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 74
Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             D    T LH A+ +GH+E+V+ LL+ G+ +      +G T LH AAR GHLEIV+ LL
Sbjct: 75  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
            K    V   DK G+TA  +++   + +L +
Sbjct: 134 -KAGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +      +G T LH AAR GHLEIV+ LL K    V   DK
Sbjct: 21  AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDK 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGV 255
            G T LH+A +   +E+V+ L+K     +N  D  G + LH+A R+G ++  ++L   G 
Sbjct: 79  DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 256 DKAVINKSRETALDTAEKTGHSEIGVILK 284
           D    +K  +TA D +   G+ ++  IL+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           L  AA  G  D VR  I   + +    K ++GY   H+AA++G LE++++L++A  + + 
Sbjct: 6   LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 62
Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             D    T LH A+ +GH+E+V+ LL+ G+ +      +G T LH AAR GHLEIV+ LL
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 186 SKEPGIVLRNDKKGQTALHMAVK 208
            K    V   DK G+T   +A++
Sbjct: 122 -KAGADVNAQDKFGKTPFDLAIR 143

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +      +G T LH AAR GHLEIV+ LL K    V   DK
Sbjct: 9   AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDK 66
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGV 255
            G T LH+A +   +E+V+ L+K     +N  D  G + LH+A R+G ++  ++L   G 
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 256 DKAVINKSRETALDTAEKTGHSEIGVILK 284
           D    +K  +T  D A + GH +I  +L+
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 5/155 (3%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           L  AA  G  D VR  I   + +    K ++GY   H+AA++G LE++++L++A  + + 
Sbjct: 6   LLEAARAGQDDEVR--ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 62
Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             D    T LH A+ +GH+E+V+ LL+ G+ +      +G T LH AAR GHLEIV+ LL
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 121
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
            K    V   DK G+T   +A+   + ++ + L K
Sbjct: 122 -KAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 5/150 (3%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +      +G T LH AAR GHLEIV+ LL K    V   DK
Sbjct: 9   AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDK 66
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGV 255
            G T LH+A +   +E+V+ L+K     +N  D  G + LH+A R+G ++  ++L   G 
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 256 DKAVINKSRETALDTAEKTGHSEIGVILKE 285
           D    +K  +T  D A   G+ +I  +L++
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 15/219 (6%)
Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIK----ARNGYDAFHIAAKQGCLEVLK 114
           +Q+  + L+ AAE G+VD+   +++      AG      + +       AA+   LE +K
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQ------AGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
            L++A   L+   D+  +T LH A+ +GH EVV++LL  G          G T +  A  
Sbjct: 62  YLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
             H+++VK LLSK   I +R D +    LH A     +++  E++      ++ V+  G+
Sbjct: 121 YKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGD 178
Query: 235 SALHIATRKGRVQKLLNINGVDKAVI--NKSRETALDTA 271
           S LHIA R+ R   ++     D  V   NK  ET L  A
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 81/157 (51%), Gaps = 14/157 (8%)
Query: 104 AAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161
           AA+ G  + +K L+E  A P      DS   T LH A+  GH E+VK LL KG+      
Sbjct: 11  AAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAK 66
Query: 162 RSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
            S+G+T LH AA NGH EIVK LLSK  +P      D  G+T LH A +    E+V +L+
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIV-KLL 122
Query: 220 KVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNING 254
             +    N  D+ G + L +A   G  +  KLL   G
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 9/154 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRN 195
           A+  G+ + VK LLE G+     + S+G+T LH AA NGH EIVK LLSK  +P      
Sbjct: 11  AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---K 66
Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNIN 253
           D  G+T LH A +    E+V +L+  +    N  D+ G + LH A   G  +  KLL   
Sbjct: 67  DSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 254 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           G D    +    T LD A + G+ EI  +L++ G
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 83/155 (53%), Gaps = 10/155 (6%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + +K L+E   ++  + DS   T LH A+  GH EVVK LL +G+       S
Sbjct: 11  AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDS 68
Query: 164 NGKTALHSAARNGHLEIVKALLSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           +GKT LH AA NGH E+VK LLS+  +P      D  G+T LH+A +    E+V +L+  
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVV-KLLLS 124
Query: 222 EPVIINMVDAKGNSALHIATRKG--RVQKLLNING 254
           +    N  D+ G + L +A   G   V KLL   G
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 9/154 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK--EPGIVLRN 195
           A+  G+ + VK LLE G+ +   + S+GKT LH AA NGH E+VK LLS+  +P      
Sbjct: 11  AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---K 66
Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG--RVQKLLNIN 253
           D  G+T LH+A +    E+V +L+  +    N  D+ G + LH+A   G   V KLL   
Sbjct: 67  DSDGKTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 254 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           G D    +    T LD A + G+ E+  +L++ G
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 9/158 (5%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
           L  AA  G  D VR ++     + A + AR+  G+   H+AA  G LE++++L++   ++
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
               DS   T LH A+ +GH+E+V+ LL+ G+ +   + S+G T LH AA+ GHLEIV+ 
Sbjct: 74  -NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 132 LL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++    +  R D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDT 270
           E+V+ L+K     +N  D+ G + LH+A R+G ++  ++L  NG D    +    T L  
Sbjct: 61  EIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHL 119
Query: 271 AEKTGHSEIGVILKEHG 287
           A K GH EI  +L ++G
Sbjct: 120 AAKRGHLEIVEVLLKNG 136

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G+ + VK L+E G+ +   + S+G+T LH AA+ GH EIVK L+SK   +  + D 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGV 255
            G+T LH A K    E+V +L+  +   +N  D+ G + LH A ++G  +  KLL   G 
Sbjct: 69  DGRTPLHYAAKEGHKEIV-KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 256 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           D    +    T LD A + G+ EI  +L++ G
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++  T D+   T LH A+S GH+E+V+ LL+ G+ +   +  
Sbjct: 21  AARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDL 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A K   +E+V+ L+K   
Sbjct: 79  TGITPLHLAAATGHLEIVEVLL-KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR 245
             +N  D  G +A  I+   G 
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +     ++G T LH AA NGHLEIV+ LL K    V  +D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDL 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGV 255
            G T LH+A     +E+V+ L+K     +N  D  G++ LH+A + G ++  ++L  +G 
Sbjct: 79  TGITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 256 DKAVINKSRETALDTAEKTGHSEIGVILK 284
           D    +K  +TA D +   G+ ++  IL+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
           G+   H+AA  G LE++++L++   ++   +D+  +T LH A+  GH+E+V+ LL+ G+ 
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
           +      NG T LH AA  GHLEIV+ LL K    V   DK G+TA  +++   + +L +
Sbjct: 106 V-NAKDDNGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISINNGNEDLAE 163
Query: 217 ELVKV 221
            L K+
Sbjct: 164 ILQKL 168

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
           G+   H+AAK G LE++++L++   + +  +D+   T LH A+  GH+E+V+ LL+ G+ 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
           +       G T LH AA +GHLEIV+ LL K    V   DK G+TA  +++   + +L +
Sbjct: 106 V-NAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 217 ELVKV 221
            L K+
Sbjct: 164 ILQKL 168

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 5/152 (3%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G+ + VK L+E G+ +   + S+G+T LH AA NGH E+VK L+SK   +  + D 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG--RVQKLLNINGV 255
            G+T LH A +    E+V +L+  +   +N  D+ G + LH A   G   V KLL   G 
Sbjct: 69  DGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 256 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           D    +    T LD A + G+ E+  +L++ G
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA  G  + ++ILM    ++  T D +  T LH A++ G +E+V+ LL+ G+ +   + S
Sbjct: 13  AAAAGQDDEVRILMANGADVNAT-DDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDS 70
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA +GHLEIV+ LL K    V   D+ G T LH+A     +E+V+ L+K   
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 224 VIINMVDAKGNSALHIATRKGR 245
             +N  DA G +A  I+  +G+
Sbjct: 129 ADVNAQDALGLTAFDISINQGQ 150

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A++ G  + V+ L+  G+ +      NG T LH AA NG LEIV+ LL K    V  +D 
Sbjct: 13  AAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDS 70
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDK 257
            G T LH+A     +E+V+ L+K     +N  D  G + LH+A   G++           
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQL----------- 118
Query: 258 AVINKSRETALDTAEKTGHSEIGVILKEHG 287
                               EI  +L +HG
Sbjct: 119 --------------------EIVEVLLKHG 128

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 9/158 (5%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPEL 123
           L  AA  G  D VR ++     + A + A +  G+   H+AA  G LE++++L++   ++
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
               DS   T LH A+ +GH+EVV+ LL+ G+ +      NG T LH AA  GHLEIV+ 
Sbjct: 74  -NADDSLGVTPLHLAADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 132 LL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++     V  +D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNASDHVGWTPLHLAAYFGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDT 270
           E+V+ L+K     +N  D+ G + LH+A  +G ++  ++L  NG D    + +  T L  
Sbjct: 61  EIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHL 119
Query: 271 AEKTGHSEIGVILKEHG 287
           A   GH EI  +L +HG
Sbjct: 120 AANIGHLEIVEVLLKHG 136

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D++ TT LH A+  GH+E+V+ LL+ G+ +   +  
Sbjct: 21  AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDV 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A K   +E+V+ L+K   
Sbjct: 79  FGYTPLHLAAYWGHLEIVEVLL-KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR 245
             +N  D  G +A  I+   G 
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 34/150 (22%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +   A + G T LH AA +GHLEIV+ LL K    V  +D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLL-KHGADVDASDV 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDK 257
            G T LH+A     +E+V+ L+K     +N +D+ G + LH+A                 
Sbjct: 79  FGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAA---------------- 121
Query: 258 AVINKSRETALDTAEKTGHSEIGVILKEHG 287
                          K G+ EI  +L +HG
Sbjct: 122 ---------------KWGYLEIVEVLLKHG 136

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 9/153 (5%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLKILMEALPEL 123
           L  AA  G  D VR ++     + A + A + Y     H+AA+ G LE++++L++   ++
Sbjct: 18  LLEAARAGQDDEVRILM----ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
               D S +T LH A+ +GH+E+V+ LL+ G+ +     + G T LH AA  GHLEIV+ 
Sbjct: 74  -NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
           LL K    V   DK G+TA  +++   + +L +
Sbjct: 132 LL-KYGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +     + G T LH AAR GHLEIV+ LL K    V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNALDF 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGV 255
            G T LH+A K   +E+V+ L+K     +N  D  G++ LH+A   G ++  ++L   G 
Sbjct: 79  SGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 256 DKAVINKSRETALDTAEKTGHSEIGVILK 284
           D    +K  +TA D +   G+ ++  IL+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
           G    H+    G LE++++L++   ++  + D S  T LH A+ +GH+E+V+ LL+ G+ 
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
           +  +    G T LH AA +GHLEIV+ LL K    V   DK G+TA  +++   + +L +
Sbjct: 106 VNAMDYQ-GYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 217 ELVKV 221
            L K+
Sbjct: 164 ILQKL 168

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++     V  ND  G T LH+ V    +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNANDWFGITPLHLVVNNGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDT 270
           E+++ L+K     +N  D  G + LH+A  +G ++  ++L   G D   ++    T L  
Sbjct: 61  EIIEVLLKY-AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHL 119
Query: 271 AEKTGHSEIGVILKEHG 287
           A + GH EI  +L ++G
Sbjct: 120 AAEDGHLEIVEVLLKYG 136

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D S  T LH A+ +GH+E+V+ LL+ G+ +   A  
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADK 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A     +E+V+ L+K   
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLL-KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY-G 136
Query: 224 VIINMVDAKGNSALHIATRKGR 245
             +N  D  G +A  I+   G 
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +      +GKT LH AA  GHLEIV+ LL K    V   DK
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADK 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGV 255
            G T LH+A     +E+V+ L+K     +N  D  G + LH+A   G ++  ++L   G 
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 256 DKAVINKSRETALDTAEKTGHSEIGVILKE 285
           D    +K  +TA D +   G+ ++  IL++
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D   +T LH A+  GH E+V+ LL+ G+ +     +
Sbjct: 21  AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDT 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           +G T LH AA NGHLEIV+ LL K    V   D  G T LH+A     +E+V+ L+K   
Sbjct: 79  DGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR 245
             +N  D  G +A  I+   G 
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 34/150 (22%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +       G T LH AA  GH EIV+ LL     +  R D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-DT 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDK 257
            G T LH+A     +E+V+ L+K     +N  DA G + LH+A  +G             
Sbjct: 79  DGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRG------------- 124
Query: 258 AVINKSRETALDTAEKTGHSEIGVILKEHG 287
                             H EI  +L +HG
Sbjct: 125 ------------------HLEIVEVLLKHG 136

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA--FHIAAKQGCLEVLKIL 116
           +Q G + L+VAA +G  D++  ++++     A   ARN   A   H+A +QG  +V+K L
Sbjct: 83  SQDGSSPLHVAALHGRADLIPLLLKHG----ANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           ++  A P      D S  T L  A S GH E+V  LL+ G+++   + + G TALH A  
Sbjct: 139 LDSNAKPN---KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVI 194
Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD 230
             H+ +V+ LL     + + N K+ +TA+  A +   I    EL++V P  +  +D
Sbjct: 195 EKHVFVVELLLLHGASVQVLN-KRQRTAVDCAEQNSKIM---ELLQVVPSCVASLD 246

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 9/147 (6%)
Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL--SKEP 189
           ++ LH A+  G  +++  LL+ G+  A    ++    LH A + GH ++VK LL  + +P
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 190 GIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--Q 247
               + D  G T L  A  G   ELV  L++     IN  + KGN+ALH A  +  V   
Sbjct: 146 N---KKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVV 201
Query: 248 KLLNINGVDKAVINKSRETALDTAEKT 274
           +LL ++G    V+NK + TA+D AE+ 
Sbjct: 202 ELLLLHGASVQVLNKRQRTAVDCAEQN 228

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D+S  T LH A+  GH+E+V+ LL+ G+ +  +  +
Sbjct: 21  AARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T L  AA  GHLEIV+ LL K    V  ND +G T LH+A     +E+V+ L+K   
Sbjct: 80  -GMTPLRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NG 136
Query: 224 VIINMVDAKGNSALHIATRKGR 245
             +N  D  G +A  I+   G 
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++  T D+S  T LH A++ GH+E+V+ LL+ G+ +  I   
Sbjct: 21  AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A     +E+V+ L+K   
Sbjct: 79  XGSTPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR 245
             +N  D  G +A  I+   G 
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++     V   D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDT 270
           E+V+ L+K     +N +D  G++ LH+A   G ++  ++L  +G D   ++   +T L  
Sbjct: 61  EIVEVLLK-HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHL 119
Query: 271 AEKTGHSEIGVILKEHG 287
           A   GH EI  +L +HG
Sbjct: 120 AAIMGHLEIVEVLLKHG 136

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++  T D+S  T LH A++ GH+E+V+ LL+ G+ +  I   
Sbjct: 21  AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
            G T LH AA  GHLEIV+ LL K    V   D  G T LH+A     +E+V+ L+K   
Sbjct: 79  MGSTPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK-HG 136
Query: 224 VIINMVDAKGNSALHIATRKGR 245
             +N  D  G +A  I+   G 
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           +GS       S+    L  AAR G  + V+ L++     V   D  G T LH+A     +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHL 60
Query: 213 ELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDT 270
           E+V+ L+K     +N +D  G++ LH+A   G ++  ++L  +G D   ++   +T L  
Sbjct: 61  EIVEVLLK-HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHL 119
Query: 271 AEKTGHSEIGVILKEHG 287
           A   GH EI  +L +HG
Sbjct: 120 AAIMGHLEIVEVLLKHG 136

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 96  NGYDAF-----HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
           N YD +     H+AA  G LE++++L+    ++    D++ TT LH A+S GH+E+V+ L
Sbjct: 29  NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVL 87
Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
           L+ G+ +     + G T L+ AA  GHLEIV+ LL K    V   DK G+TA  +++
Sbjct: 88  LKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLL-KHGADVNAQDKFGKTAFDISI 142

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 4/206 (1%)
Query: 54  MLSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEV 112
           +L + +Q G   L+ +  +   ++   ++ +  + +L      +G+  FHIA   G LEV
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 113 LKILME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           +K L +  L   L    +   T LH A  +   EV +FL+E G+++    + N +  LH 
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-QIPLHR 146
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AA  G L++++ L       V   DK+G T L  A+     +    LV+      ++VD 
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 232 KGNSALHIATRKGRVQKLLNINGVDK 257
           KG  A  +A  + +V+K    N VDK
Sbjct: 207 KGAKAEDVALNE-QVKKFFLNNVVDK 231

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 107 QGCLE--VLKI--LMEALPELLMTFDSSNTTALH-TASSQGHVEVVKFLLEK--GSTLAT 159
           Q C+E    K+  L+ + P LL+  D      LH + S Q H E+  FLL K     L  
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDD 66
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIEL 214
               +G T  H A   G+LE+VK+L  +     L+ D      +G T LH+AV  +  E+
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVIN---KSRETALDTA 271
              L++     + + D      LH A   G ++ +  + G+ K+ +N   K   T L  A
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 272 EKTGHSEIGVILKE 285
              GH +  V+L E
Sbjct: 182 LAEGHGDAAVLLVE 195

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 125 MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS-NGKTALHSAARNGHLEIVKA 183
           M       T LH A+  GH E VK LL KG+ +   ARS +G T LH AA+NGH EIVK 
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN--ARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG 233
           LL+K   +  R+ K G T  H+A K    E           I+ ++DAKG
Sbjct: 61  LLAKGADVNARS-KDGNTPEHLAKKNGHHE-----------IVKLLDAKG 98

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           +G T LH+AA+NGH E VK LLSK   +  R+ K G T LH+A K    E+V +L+  + 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 224 VIINMVDAKGNSALHIATRKGR--VQKLLNINGVD 256
             +N     GN+  H+A + G   + KLL+  G D
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 94/214 (43%), Gaps = 40/214 (18%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
           A  G LE LK  + A   L    D  + TALH A S GH E+V+FLL+ G  +       
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRN----------------------------- 195
           G + LH AA  G  EIVKALL K   +   N                             
Sbjct: 73  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 196 ---DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLL 250
              D    TA+H A    +++++  L+  +    N+ D +GN+ LH+A  + RV+  KLL
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Query: 251 NINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
              G    + NK  +T L  A K G   +G+ILK
Sbjct: 192 VSQGASIYIENKEEKTPLQVA-KGG---LGLILK 221

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 94/214 (43%), Gaps = 40/214 (18%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
           A  G LE LK  + A   L    D  + TALH A S GH E+V+FLL+ G  +       
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 73
Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRN----------------------------- 195
           G + LH AA  G  EIVKALL K   +   N                             
Sbjct: 74  GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 196 ---DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLL 250
              D    TA+H A    +++++  L+  +    N+ D +GN+ LH+A  + RV+  KLL
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLYYK-ASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Query: 251 NINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
              G    + NK  +T L  A K G   +G+ILK
Sbjct: 193 VSQGASIYIENKEEKTPLQVA-KGG---LGLILK 222

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 4/205 (1%)
Query: 54  MLSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEV 112
           +L + +Q G   L+ +  +   ++   ++ +  + +L      +G+  FHIA   G LEV
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 113 LKILME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           +K L +  L   L    +   T LH A  +   EV +FL+E G+++    + N +  LH 
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-QIPLHR 146
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AA  G L++++ L       V   DK+G T L  A+     +    LV+      ++VD 
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 232 KGNSALHIATRKGRVQKLLNINGVD 256
           KG  A  +A  + +V+K    N VD
Sbjct: 207 KGAKAEDVALNE-QVKKFFLNNVVD 230

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 107 QGCLE--VLKI--LMEALPELLMTFDSSNTTALH-TASSQGHVEVVKFLLEK--GSTLAT 159
           Q C+E    K+  L+ + P LL+  D      LH + S Q H E+  FLL K     L  
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDD 66
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIEL 214
               +G T  H A   G+LE+VK+L  +     L+ D      +G T LH+AV  +  E+
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVIN---KSRETALDTA 271
              L++     + + D      LH A   G ++ +  + G+ K+ +N   K   T L  A
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 272 EKTGHSEIGVILKE 285
              GH +  V+L E
Sbjct: 182 LAEGHGDAAVLLVE 195

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 9/151 (5%)
Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKA--RNGYDAFHIAAKQGCLEVLKILMEALPEL 123
           L  AA  G  D VR +I     + A + A    G    H+AA  G LE++++L++   ++
Sbjct: 18  LLEAARAGQDDEVRILI----ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
               D    T LH A+  GH+E+V+ LL+ G+ +     + G T LH AA  GHLEIV+ 
Sbjct: 74  DAA-DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMT-GSTPLHLAADEGHLEIVEV 131
Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIEL 214
           LL K    V   DK G+TA  +++   + +L
Sbjct: 132 LL-KYGADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 94/214 (43%), Gaps = 40/214 (18%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
           A  G L+ LK  + A   L    D  + TALH A S GH E+V+FLL+ G  +       
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 165 GKTALHSAARNGHLEIVKALLSK------------------------EPGIVL------- 193
           G + LH AA  G  EIVKALL K                        E  ++L       
Sbjct: 73  GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 194 -RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLL 250
              D    TA+H A    ++++V  L+       N+ D +GN+ LH+A  + RV+  K L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 251 NINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
              G    + NK  +T L  A K G   +G+ILK
Sbjct: 192 VTQGASIYIENKEEKTPLQVA-KGG---LGLILK 221

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 95/214 (44%), Gaps = 40/214 (18%)
Query: 105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
           A  G L+ LK  + A   L    D  + TALH A S GH E+V+FLL+ G  +       
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDA 72
Query: 165 GKTALHSAARNGHLEIVKALLSK------------------------EPGIVL------- 193
           G + LH AA  G  EIVKALL K                        E  ++L       
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 194 -RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLL 250
              D    TA+H A    ++++V  L+  +    N+ D +GN+ LH+A  + RV+  K L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 251 NINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
              G    + NK  +T L  A K G   +G+ILK
Sbjct: 192 VTQGASIYIENKEEKTPLQVA-KGG---LGLILK 221

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Query: 54  MLSKMNQSGETALYVAAEYGYVDMVREMI-RYHDTSLAGIKARNGYDAFHIAAKQGCLEV 112
           +L + +Q G   L+ +  +   ++   ++ +  + +L      +G+  FHIA   G LEV
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 113 LKILME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS 171
           +K L +  L   L    +   T LH A  +   EV +FL+E G+++    + N +  LH 
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN-QIPLHR 146
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AA  G L++++ L       V   DK+G T L  A+     +    LV+      ++VD 
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Query: 232 KGNSALHIATRKGRVQKLLN 251
           KG  A  +A  +   +  LN
Sbjct: 207 KGAKAEDVALNEQVKKFFLN 226

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 107 QGCLE--VLKI--LMEALPELLMTFDSSNTTALH-TASSQGHVEVVKFLLEK--GSTLAT 159
           Q C+E    K+  L+ + P LL+  D      LH + S Q H E+  FLL K     L  
Sbjct: 8   QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDD 66
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND-----KKGQTALHMAVKGQSIEL 214
               +G T  H A   G+LE+VK+L  +     L+ D      +G T LH+AV  +  E+
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRP----LKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVIN---KSRETALDTA 271
              L++     + + D      LH A   G ++ +  + G+ K+ +N   K   T L  A
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 272 EKTGHSEIGVILKE 285
              GH +  V+L E
Sbjct: 182 LAEGHGDAAVLLVE 195

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           A + G  + ++ILM    ++    D +  T LH A+ +GH+E+V+ LL+ G+ +   + S
Sbjct: 21  ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDS 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
            G+T LH AA  GHLEIV+ LL     +  + DK G+TA  +++   + +L + L K+
Sbjct: 79  WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 57  KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLK 114
           ++ + G++ L++A  +    +  E+IR     LA +  +N       H+A      E+ +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 115 ILMEA--LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST--LATIARS---NGKT 167
            L+ A   PEL    D    T LH A  QG +  V  L +  +T  L +I ++   NG T
Sbjct: 63  ALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 168 ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIIN 227
            LH A+ +G+L IV+ L+S    +  +    G+TALH+AV  Q+ +LV  L+K     +N
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVN 178
Query: 228 MVDAKGNSALHIATRK--GRVQKLL 250
            V  +G S   +   +   R+Q+ L
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQL 203

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 15/204 (7%)
Query: 58  MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLKI 115
           + + G++ L++A  +    +  E+IR     LA +  +N       H+A      E+ + 
Sbjct: 1   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 116 LMEAL--PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST--LATIARS---NGKTA 168
           L+ A   PEL    D    T LH A  QG +  V  L +  +T  L +I ++   NG T 
Sbjct: 61  LLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 117
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
           LH A+ +G+L IV+ L+S    +  +    G+TALH+AV  Q+ +LV  L+K     +N 
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNR 176
Query: 229 VDAKGNSALHIATRK--GRVQKLL 250
           V  +G S   +   +   R+Q+ L
Sbjct: 177 VTYQGYSPYQLTWGRPSTRIQQQL 200

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 42/208 (20%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           A + G  E  + L+EA  ++    D  N T LH A+    +++VK+ + KG+ +  +   
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 164 NGKTALHSAARNGHLEIVKALL--SKEPGIVLRNDKKGQTALHMA-------------VK 208
              T LH A R GHL +V  L+    +P ++   D +G + +H+A              K
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 209 GQSIELVDE------------LVKVEP--------VIINMVDA-KGNSALHIATRKGR-- 245
           GQ ++++D+               V+P        V +N+ D    N+ALH A   G   
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191
Query: 246 VQKLLNINGVDKAVINKSRETALDTAEK 273
           V  LL   G +    N   E+ALD A++
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDLAKQ 219

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           A + G  + ++ILM    ++    D +  T LH A+ +GH+E+V+ LL+ G   A +  S
Sbjct: 21  ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHG---ADVNAS 76
Query: 164 N--GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           +  G+T LH AA  GHLEIV+ LL     +  + DK G+TA  +++   + +L + L K+
Sbjct: 77  DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           A + G  + ++ILM    ++    D +  T LH A+ +GH+E+V+ LL+ G+ +   AR 
Sbjct: 21  ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ARD 77
Query: 164 -NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
             G+T LH AA  GHLEIV+ LL     +  + DK G+TA  +++   + +L + L K+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D    T LH A+   H+E+V+ LL+ G+ +     +
Sbjct: 21  AARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDN 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           +G T LH AA  GHLEIV+ LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           AAR G  + V+ L++     V  ND+KG T LH+A     +E+V+ L+K     +N  D 
Sbjct: 21  AARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDN 78
Query: 232 KGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 285
            G++ LH+A   G ++  ++L  +G D    +K  +TA D +   G+ ++  IL++
Sbjct: 79  DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           N  GET L++A+  G +  V  +++  + S   +K   G+   H A   G L+V+++L++
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
               L+ T    N + LH A+  GHV++VK LL  G++
Sbjct: 65  H-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
           G    HIA+ +G +  ++ L++   +  +  D +  T LH A + GH++VV+ LL+  + 
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 157 LATIARSNGKTALHSAARNGHLEIVKALLS 186
           + T    N  + LH AA+NGH++IVK LLS
Sbjct: 69  VNTTGYQN-DSPLHDAAKNGHVDIVKLLLS 97

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
           + H  A QG L+ LK  +     L+   D    T L  AS+ G +E V+FLLE G+    
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
           +A+   ++AL  A+  G+ +IV  LL ++  I +  D  G T L  AV+G  ++ V+ L+
Sbjct: 65  LAKER-ESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALL 122

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL--SK 187
            ++ ++H  ++QG ++ +K  L KG  L       G T L  A+  G +E V+ LL    
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
           +P I+    K+ ++AL +A  G   ++V  L++ + V IN+ D  G + L  A R   V+
Sbjct: 61  DPHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVK 116
Query: 248 --KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 286
             + L   G D      S  T +D A   G+ ++  +++ H
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D    T LH A+   H+E+V+ LL+ G+ +  I  +
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-DA 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
            G+T LH  A  GHLEIV+ LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
           + H  A QG L+ LK  +     L+   D    T L  AS+ G +E V+FLLE G+    
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
           +A+   ++AL  A+  G+ +IV  LL ++  I +  D  G T L  AV G  ++ V+ L+
Sbjct: 65  LAKER-ESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVHGNHVKCVEALL 122

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL--SK 187
            ++ ++H  ++QG ++ +K  L KG  L       G T L  A+  G +E V+ LL    
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
           +P I+    K+ ++AL +A  G   ++V  L++ + V IN+ D  G + L  A     V+
Sbjct: 61  DPHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVHGNHVK 116
Query: 248 --KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 286
             + L   G D      S  T +D A   G+ ++  +++ H
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
           T LH A+  GH+E+V+ LL+ G+ +     + G+T LH AA   HLEIV+ LL K    V
Sbjct: 49  TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLL-KHGADV 106
Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKV 221
              DK G+TA  +++   + +L + L K+
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK-------TALHSAARNGHLEI 180
           DS+  TALH + S  +  VV+ LL+ G  +  + + N         TAL +      +E 
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSG--VCKVDKQNRAGYSPIMLTALATLKTQDDIET 165
Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
           V  L  +   I  +  + GQTAL +AV    +++V  L+  E   +N+ D  G++AL  A
Sbjct: 166 VLQLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCA 223
Query: 241 TRKGRVQ---KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 283
              G  +    LL +   D ++ ++   TAL  A   G SEI  +L
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS 163
           AA+ G  + ++ILM    ++    D    T L+ A++ GH+E+V+ LL+ G+ +  +  +
Sbjct: 21  AARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DA 78
Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
            G T LH AA  GHLEI + LL K    V   DK G+TA  +++   + +L + L K+
Sbjct: 79  IGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 30/249 (12%)
Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
           T L++AA Y  V +V+ ++++     A  K + G    H A   G  EV ++L++     
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADVHA--KDKGGLVPLHNACSYGHYEVTELLLKH-GAC 116
Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL-------------- 169
           +   D    T LH A+S+  VEV   LL  G+   T+   +GK+A+              
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTY 175
Query: 170 ----HS---AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG--QSIELVDELVK 220
               HS   AAR   L  VK  L+ E  I  +  +  +TALH AV       + V EL+ 
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLL 234
Query: 221 VEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVINKSRETALDTAEKTGHSE 278
            +   +N  +    + LH+A  +    V ++L+ +G     ++   +TAL  A   GH +
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ 294
Query: 279 IGVILKEHG 287
              +L  +G
Sbjct: 295 TCRLLLSYG 303

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 12/202 (5%)
Query: 24  DTPLQSLVRTGSVELVLDMISSY--GDMELREMLSKMNQSGETALYVAAEYGYVDMVREM 81
           DTPL   V  G++  V  +++ +  G  EL ++ + + Q   T L++A       +VR +
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQ---TPLHLAVITTLPSVVRLL 65
Query: 82  IRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN---TTALHTA 138
           +    + +A    R+G  A H+A +      L+ L+++     +  ++ N    TALH A
Sbjct: 66  VTAGASPMA--LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123
Query: 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
            +    E V+ LLE+G+ +  +   +G++ L  A  N  L +V+ LL     +  +    
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM-YS 182
Query: 199 GQTALHMAVKGQSIELVDELVK 220
           G +ALH A     + LV  LV+
Sbjct: 183 GSSALHSASGRGLLPLVRTLVR 204

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 38/228 (16%)
Query: 76  DMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL 135
           +++R + R  D + A +   +G  A H A     ++++K L+E    +    D+     L
Sbjct: 55  EVLRLLERGADINYANV---DGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPL 110
Query: 136 HTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL-------------HSAARNGHLEIVK 182
           H A+S G++++ ++L+ +G+ +  +  S G T L             +   R G    ++
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQG--VDIE 167
Query: 183 ALLSKEPGIVLR-----------ND----KKGQTALHMAVKGQSIELVDELVKVEPVIIN 227
           A   +E  I+LR           ND    K G TALH+A      E++  L++     +N
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVN 226
Query: 228 MVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEK 273
           + D  G + LH A   G+ +  ++L  N  D   +NK  +TA D A++
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 30/187 (16%)
Query: 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
            +IA     +E+ K L++   ++ +    S++  L+ A +QG  E++ ++L+  +     
Sbjct: 43  LNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY-AGAQGRTEILAYMLKHATPDLNK 101
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSK-EPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
               G  AL  AA  GH++ VK LL      I  +ND  G TAL                
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF-GYTAL---------------- 144
Query: 220 KVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
            +E V +     +GN           + KLL  NG D+++ + S  TA+D A + G++EI
Sbjct: 145 -IEAVGLR----EGNQLYQ------DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193
Query: 280 GVILKEH 286
             IL ++
Sbjct: 194 SKILAQY 200

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI 160
            H AAK+G L  L+  ++    +    D + +TAL+ A   GH ++V+ L  + +     
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
               G TALH+AA  G+ +IV+ LL+K     LRN +K
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
           LH AA+ G+L  ++  L    G+    DK G TAL+ A  G   ++V+ L     + +N 
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 229 VDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 286
            +  G++ALH A  KG     +LL   G    + N  ++ A D A  T  +   ++ K+ 
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXA--TNAACASLLKKKQ 193
Query: 287 GVPCGKSIKPQANSARELKQAVSDIK 312
           G     +++  +N+   L    SD++
Sbjct: 194 GT---DAVRTLSNAEDYLDDEDSDLE 216

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRND 196
           A+  G  + V+ L+  G+ +A   + NG T LH AARNGHLE+VK LL  E G  V   D
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL--EAGADVXAQD 87
Query: 197 KKGQTALHMAVKGQSIELVD 216
           K G+TA  +++   + +L +
Sbjct: 88  KFGKTAFDISIDNGNEDLAE 107

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 63  ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
           E+ L +AA+   V  + +++++    +   +   G  A HIAA    LE   +LMEA PE
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 123 LLMTFDSS----NTTALHTASSQGHVEVVKFLLEKGSTLATIARSN------------GK 166
           L+    +S      TALH A    +V +V+ LL +G++++  A  +            G+
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLR-NDKKGQTALHMAV 207
             L  AA  G  EIV+ L+  E G  +R  D  G T LH+ +
Sbjct: 123 HPLSFAACVGSEEIVRLLI--EHGADIRAQDSLGNTVLHILI 162

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRND 196
           A+  G  + V+ L+  G+ +A   + NG T LH AARNGHLE+VK LL  E G  V   D
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL--EAGADVNAQD 69
Query: 197 KKGQTALHMAVKGQSIELVD 216
           K G+TA  +++   + +L +
Sbjct: 70  KFGKTAFDISIDNGNEDLAE 89

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 104 AAKQGCLEVLKILM-EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR 162
           AA+ G  + ++ILM    P    T D   T+ LH A+  GH    + LL  G  ++  AR
Sbjct: 9   AARAGQDDEVRILMANGAP---FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDAR 63
Query: 163 SN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           +   +T LH AA  GH  IV+ LL K    V   D    TALH A +    E+V+ L+K
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQT 201
           G+ E+ + LL +G+      R+ G   +H AAR G L+ ++ LL  +  + +  D +G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRT-GFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNL 105
Query: 202 ALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKA 258
            LH+A K   + +V+ LVK     +   + KG++A  +A   GR  V  L+  NG   A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGA 164

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQT 201
           G+ E+ + LL +G+      R+ G   +H AAR G L+ ++ LL  +  + +  D +G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRT-GNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 202 ALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKA 258
            LH+A K   + +V+ LVK     +   + KG++A  +A   GR  V  L+  NG   A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGA 164

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 17/202 (8%)
Query: 18  LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDM 77
           L  K   TP       GSV+L+   +S   D+      ++ +  G TA   AA YG V  
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADV------NECDFYGFTAFMEAAVYGKVKA 120
Query: 78  VREM--------IRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDS 129
           ++ +        +R           + G  A   AA++G +EVLKIL++ +   +   D+
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 130 SNTTALHTA---SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
               AL  A   S    VE +  LL        +    GKT L  A    HL +V+ LL 
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
Query: 187 KEPGIVLRNDKKGQTALHMAVK 208
           +E   +   D  G+TAL +AV+
Sbjct: 241 QEHIEINDTDSDGKTALLLAVE 262

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
           TALH A   GH E+VKFL++ G  +   A S+G T LH AA   ++++ K L+     + 
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 193 LRNDKKGQTA 202
                  QTA
Sbjct: 131 AMTYSDMQTA 140

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 99  DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA 158
           D      ++G    +++ ++     L   D    + LH A  +G   VV+ L+ +G+ + 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 159 TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
            + R +  T LH AA +GH +IV+ LL  +  I   N+  G   LH A      ++ ++L
Sbjct: 67  VMNRGD-DTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDL 124
Query: 219 V 219
           V
Sbjct: 125 V 125

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 17/202 (8%)
Query: 18  LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDM 77
           L  K   TP       GSV+L+   +S   D+      ++ +  G TA   AA YG V  
Sbjct: 87  LRKKNGATPFILAAIAGSVKLLKLFLSKGADV------NECDFYGFTAFMEAAVYGKVKA 140
Query: 78  VREM--------IRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDS 129
           ++ +        +R           + G  A   AA++G +EVLKIL++ +   +   D+
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 130 SNTTALHTA---SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
               AL  A   S    VE +  LL        +    GKT L  A    HL +V+ LL 
Sbjct: 201 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260
Query: 187 KEPGIVLRNDKKGQTALHMAVK 208
           +E   +   D  G+TAL +AV+
Sbjct: 261 QEHIEINDTDSDGKTALLLAVE 282

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
           TALH A   GH E+VKFL++ G  +   A S+G T LH AA   ++++ K L+     + 
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 193 LRNDKKGQTA 202
                  QTA
Sbjct: 131 AMTYSDMQTA 140

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           +K R G+   H AA+ G L+ L+ L+E   ++ +  D+     LH A+ +GH+ VV+FL+
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           +  ++        G TA   A   G  E+V  + +   G
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQT 201
           G+ E+ + LL +G+      R+ G   +H AAR G L+ ++ LL  +  + +  D +G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRT-GFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 202 ALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKA 258
            LH+A K   + +V+ LVK     +   + KG++A  +A   GR  V  L+  NG   A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGA 164

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           +K R G+   H AA+ G L+ L+ L+E   ++ +  D+     LH A+ +GH+ VV+FL+
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           +  ++        G TA   A   G  E+V  + +   G
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQT 201
           G+ E+ + LL +G+      R+ G   +H AAR G L+ ++ LL  +  + +  D +G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRT-GFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 202 ALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLLNING 254
            LH+A K   + +V+ LVK     +   + KG++A  +A   GR  V  L+  NG
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQT 201
           G+ E+ + LL +G+      R+ G   +H AAR G L+ ++ LL  +  + +  D +G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRT-GFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 202 ALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKA 258
            LH+A K   + +V+ LVK     +   + KG++A  +A   GR  V  L+  NG   A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGA 164

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
Query: 129 SSNTTA---LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
           S N+ A   L  A+  G VE VK L    S           T LH AA    + +V+ LL
Sbjct: 5   SGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
            +    V   DK G   LH A      E+ + LVK    ++N+ D    + LH A  KG+
Sbjct: 65  -QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGK 122
Query: 246 VQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
            +  KLL  +G D    N+   T LD   K G ++I  +L+
Sbjct: 123 YEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 162

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           +S     L  A+  G VE VK L    S           T LH AA    + +V+ LL +
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 63
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
               V   DK G   LH A      E+ + LVK    ++N+ D    + LH A  KG+ +
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 248 --KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
             KLL  +G D    N+   T LD   K G ++I  +L+
Sbjct: 123 ICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 160

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           +S     L  A+  G VE VK L    S           T LH AA    + +V+ LL +
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-Q 67
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
               V   DK G   LH A      E+ + LVK    ++N+ D    + LH A  KG+ +
Sbjct: 68  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 248 --KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
             KLL  +G D    N+   T LD   K G ++I  +L+
Sbjct: 127 ICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 164

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           D+S T+ +H A+  G ++ +K L+E G+ +  +    G   +H A + GH  +V  L ++
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE 123
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
               + R D +G T L +A++  + +LVD L
Sbjct: 124 SD--LHRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           D+S T+ +H A+  G ++ +K L+E G+ +  +    G   +H A + GH  +V  L ++
Sbjct: 71  DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE 129
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
               + R D +G T L +A++  + +LVD L
Sbjct: 130 SD--LHRRDARGLTPLELALQRGAQDLVDIL 158

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDK 197
           A+  G  + V+ L+  G+ +  +   +G T LH AA+ GHLEIV+ LL K    V   D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAL-DEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDN 78
Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
            G T LH+A     +E+V+ L+K     +N  D  G +A  I+   G 
Sbjct: 79  FGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGN 125

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           D    + LH A  +G   VV+ L+ +G+ +  + R +  T LH AA +GH +IV+ LL  
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQKLLQY 89
Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
           +  I   N+  G   LH A      ++ ++LV
Sbjct: 90  KADINAVNE-HGNVPLHYACFWGQDQVAEDLV 120

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           L  A+  G  + V+ L+  G+ +      +G T LH AAR GHLEIV+ LL K    V  
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNA 63
Query: 195 NDKKGQTALHMAVKGQSIELVDELVKV 221
            DK G+TA  +++   + +L + L K 
Sbjct: 64  QDKFGKTAFDISIDNGNEDLAEILQKA 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	534
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-50
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-48
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-47
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-47
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-46
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-42
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-45
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-38
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-31
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-45
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-23
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-44
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-38
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-43
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-40
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-40
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-38
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-42
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-42
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-41
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-39
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-36
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-41
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-35
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-40
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-05
2rfa_A	232	Transient receptor potential cation channel subfa	1e-39
2rfa_A	232	Transient receptor potential cation channel subfa	1e-32
2rfa_A	232	Transient receptor potential cation channel subfa	1e-17
2rfa_A	232	Transient receptor potential cation channel subfa	2e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-39
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-39
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-38
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-37
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-35
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-37
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-36
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-36
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-36
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-36
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-36
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-35
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-35
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-34
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-34
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-07
2etb_A	256	Transient receptor potential cation channel subfam	9e-34
2etb_A	256	Transient receptor potential cation channel subfam	5e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-32
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-33
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-32
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-32
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-31
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-30
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-09
2pnn_A	273	Transient receptor potential cation channel subfa	9e-31
2pnn_A	273	Transient receptor potential cation channel subfa	1e-29
2pnn_A	273	Transient receptor potential cation channel subfa	5e-28
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-26
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-28
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-26
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  171 bits (436), Expect = 3e-50
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 13/243 (5%)

Query: 54  MLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLE 111
           M ++ ++ G+T L++A   G +  V  ++         +           H+A       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 112 VLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT---IARSNGK 166
           V+++L+   A P  L   D    TA H A        ++ LL+  +           +G 
Sbjct: 61  VVRLLVTAGASPMAL---DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117

Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVII 226
           TALH A      E V+ LL +   I   + K G++ L  AV+  S+ +V  L++     +
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANV 176

Query: 227 NMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
           N     G+SALH A+ +G +   + L  +G D ++ N   +T L  A      +I     
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA 236

Query: 285 EHG 287
              
Sbjct: 237 TRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.0 bits (183), Expect = 4e-15
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 16/134 (11%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           T L   V T   E V  ++    D++     +   +SG + L  A E   + MV+ ++++
Sbjct: 118 TALHVAVNTECQETVQLLLERGADID-----AVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

Query: 85  HDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A +  +  +G  A H A+ +G L +++ L+   A   L    +  N T L  A S
Sbjct: 173 G----ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK---NCHNDTPLMVARS 225

Query: 141 QGHVEVVKFLLEKG 154
           +  +++++    + 
Sbjct: 226 RRVIDILRGKATRP 239

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  166 bits (423), Expect = 8e-48
 Identities = 72/289 (24%), Positives = 122/289 (42%), Gaps = 35/289 (12%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A  D+  L   V+   V+LV  ++    ++       +  + G T L+ A +    D+V 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVN-----FQEEEGGWTPLHNAVQMSREDIVE 56

Query: 80  EMIRYHDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTAL 135
            ++R H    A    R  NG   F +AA  G +++LK+ +   A        D    TA 
Sbjct: 57  LLLR-HG---ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC---DFYGFTAF 109

Query: 136 HTASSQGHVEVVKFLLEKG---------STLATIARSNGKTALHSAARNGHLEIVKALLS 186
             A+  G V+ +KFL ++G                R  G TAL  AA  GH+E++K LL 
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 187 KEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI-----INMVDAKGNSALHIAT 241
           +    V   D  G+ AL  A+       V+ +  +  ++     +N+   +G + L +A 
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHL--LLDHGADVNVRGERGKTPLILAV 227

Query: 242 RKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
            K     VQ+LL    ++    +   +TAL  A +    +I  +L + G
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 94.8 bits (237), Expect = 6e-22
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           A       L  A +N  +++V+ LL     +  + ++ G T LH AV+    ++V+ L++
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSE 278
                  +    G +   +A   G V+  KL    G D    +    TA   A   G  +
Sbjct: 61  HG-ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 279 IGVILKEHG 287
               L + G
Sbjct: 120 ALKFLYKRG 128

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  169 bits (431), Expect = 2e-47
 Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 28/272 (10%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL      G + +V +++       +       N   ET L++AA  G+ ++ + +++ 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVS------NVKVETPLHMAARAGHTEVAKYLLQN 69

Query: 85  HDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A +  KA++     H AA+ G   ++K+L+E  A P L     ++  T LH A+ 
Sbjct: 70  K----AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLHIAAR 122

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKK 198
           +GHVE V  LLEK ++        G T LH AA+ G + + + LL ++      N   K 
Sbjct: 123 EGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---NAAGKN 178

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQKLLNINGV 255
           G T LH+AV   ++++V  L+       +     G + LHIA ++ +    + LL   G 
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGG 236

Query: 256 DKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
                +    T L  A + GH+E+  +L    
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  163 bits (415), Expect = 4e-45
 Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 18/236 (7%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKIL 116
            ++G T L+VA  +  +D+V+ ++             A NGY   HIAAKQ  +EV + L
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRG----GSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           ++                T LH A+ +GH E+V  LL K +    +   +G T LH  A+
Sbjct: 232 LQYGGSANAE---SVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQ 287

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
            GH+ +   L+     +     + G T LH+A    +I+LV  L++ +   +N     G 
Sbjct: 288 EGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGY 345

Query: 235 SALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           S LH A ++G    V  LL  NG     ++    T L  A++ G+  +  +LK   
Sbjct: 346 SPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  159 bits (405), Expect = 1e-43
 Identities = 72/236 (30%), Positives = 107/236 (45%), Gaps = 18/236 (7%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
            +SG T L+VA+  G++ +V+ +++      A     N       H+AA+ G  EV K L
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRG----ASPNVSNVKVETPLHMAARAGHTEVAKYL 66

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           ++  A           + T LH A+  GH  +VK LLE  +    +A + G T LH AAR
Sbjct: 67  LQNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAR 122

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
            GH+E V ALL KE        KKG T LH+A K   + + + L++ +    N     G 
Sbjct: 123 EGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGL 180

Query: 235 SALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           + LH+A        V+ LL   G        +  T L  A K    E+   L ++G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  159 bits (404), Expect = 1e-43
 Identities = 72/278 (25%), Positives = 121/278 (43%), Gaps = 30/278 (10%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           K D TPL    R G   +V  ++ +  +  L         +G T L++AA  G+V+ V  
Sbjct: 78  KDDQTPLHCAARIGHTNMVKLLLENNANPNLA------TTAGHTPLHIAAREGHVETVLA 131

Query: 81  MIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALH 136
           ++       A        G+   H+AAK G + V ++L+E  A P        +  T LH
Sbjct: 132 LLEKE----ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLH 184

Query: 137 TASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
            A    ++++VK LL +G    +      NG T LH AA+   +E+ ++LL         
Sbjct: 185 VAVHHNNLDIVKLLLPRG---GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA--- 238

Query: 195 N--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLL 250
           N    +G T LH+A +    E+V  L+  +    N+ +  G + LH+  ++G V    +L
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 251 NINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 288
             +GV      +   T L  A   G+ ++   L +H  
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  143 bits (362), Expect = 1e-37
 Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 14/203 (6%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
               +G    H+A+  G L ++K L++  A P      +    T LH A+  GH EV K+
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVAKY 65

Query: 150 LLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
           LL+     A + A++   +T LH AAR GH  +VK LL       L     G T LH+A 
Sbjct: 66  LLQNK---AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIAA 121

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRE 265
           +   +E V  L++ E      +  KG + LH+A + G+V+  +LL           K+  
Sbjct: 122 REGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL 180

Query: 266 TALDTAEKTGHSEIGVILKEHGV 288
           T L  A    + +I  +L   G 
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGG 203

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 6e-37
 Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 32/241 (13%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL    +   VE+   ++   G           +  G T L++AA+ G+ +MV  ++  
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAE------SVQGVTPLHLAAQEGHAEMVALLLSK 267

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A     N  G    H+ A++G + V  +L++   + +          T LH AS 
Sbjct: 268 Q----ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT---TRMGYTPLHVASH 320

Query: 141 QGHVEVVKFLLEKGSTLATIARSN--GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
            G++++VKFLL+     A +      G + LH AA+ GH +IV  LL             
Sbjct: 321 YGNIKLVKFLLQHQ---ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-SSD 376

Query: 199 GQTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATRKGRVQKLLNINGVD 256
           G T L +A +   I + D L  V  E   + + D    S          V ++L+    D
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET------VDEILD-VSED 429

Query: 257 K 257
           +
Sbjct: 430 E 430

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 226 INMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 283
                  G + LH+A+  G +   K L   G    V N   ET L  A + GH+E+   L
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 66

Query: 284 KEHG 287
            ++ 
Sbjct: 67  LQNK 70

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  163 bits (415), Expect = 4e-47
 Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 23/240 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLK 114
           +Q+  + L+ AAE G+VD+   +++       G      + +       AA+   LE +K
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQA------GANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 115 ILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
            L++  AL +     D+  +T LH A+ +GH EVV++LL  G          G T +  A
Sbjct: 62  YLIKAGALVD---PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 173 ARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVD 230
               H+++VK LLSK   I   N  D +    LH A     +++ + L+  +   ++ V+
Sbjct: 119 TEYKHVDLVKLLLSKGSDI---NIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVN 174

Query: 231 AKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 288
             G+S LHIA R+ R     L      D  + NK  ET L  A         + + +   
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  142 bits (362), Expect = 1e-39
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 13/202 (6%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
           ++ +N     H AA+ G +++  +L++  A  +   T      T L  A+   H+E VK+
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANID---TCSEDQRTPLMEAAENNHLEAVKY 62

Query: 150 LLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
           L++ G   A +    + G T LH AA+ GH E+V+ LLS     V   D  G T +  A 
Sbjct: 63  LIKAG---ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRE 265
           + + ++LV  L+      IN+ D + N  LH A   G V   ++L     D   +N   +
Sbjct: 120 EYKHVDLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178

Query: 266 TALDTAEKTGHSEIGVILKEHG 287
           + L  A +    +  V+     
Sbjct: 179 SPLHIAARENRYDCVVLFLSRD 200

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  124 bits (315), Expect = 6e-33
 Identities = 42/200 (21%), Positives = 87/200 (43%), Gaps = 18/200 (9%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL        +E V  +I +   ++        +  G T L++AA+ G+ ++V+ ++  
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAGALVD------PKDAEGSTCLHLAAKKGHYEVVQYLLS- 98

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQG 142
           +       +   G+     A +   ++++K+L+   +        D+     LH A+  G
Sbjct: 99  NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN---IRDNEENICLHWAAFSG 155

Query: 143 HVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQ 200
            V++ + LL        + A +  G + LH AAR    + V   LS++  + L+ +K+G+
Sbjct: 156 CVDIAEILLAAK---CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGE 211

Query: 201 TALHMAVKGQSIELVDELVK 220
           T L  A     +    ++ K
Sbjct: 212 TPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.7 bits (107), Expect = 3e-05
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 226 INMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 283
             M      S LH A   G V    +L   G +    ++ + T L  A +  H E    L
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 284 KEHG 287
            + G
Sbjct: 64  IKAG 67

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  159 bits (405), Expect = 8e-46
 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 18/229 (7%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILME- 118
               L+ A        V+E++       + +  K ++G    H +      E+   L+  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKP---SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 58

Query: 119 -ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARN 175
                L    D S  T  H A S G++EVVK L ++      +    + G T LH A   
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGK 117

Query: 176 GHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG 233
              E+ + L+     +      DK  Q  LH A    S++L++ L  +    +N  D +G
Sbjct: 118 KWFEVSQFLIENGASV---RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174

Query: 234 NSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
            + L  A  +G       L+   G +  +++     A D A      + 
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  150 bits (382), Expect = 2e-42
 Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 25  TPLQSLVRTGSVELVLDMISSYG-DMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
            PL           V +++ S    +  +      +Q G   L+ +  +   ++   ++ 
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQK------DQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 84  YH-DTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL-LMTFDSSNTTALHTASSQ 141
              + +L      +G+  FHIA   G LEV+K L +   +  L    +   T LH A  +
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

Query: 142 GHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG 199
              EV +FL+E G   A++  +    +  LH AA  G L++++ L       V   DK+G
Sbjct: 118 KWFEVSQFLIENG---ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174

Query: 200 QTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLN 251
            T L  A+     +    LV+      ++VD KG  A  +A  +   +  LN
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  119 bits (301), Expect = 4e-31
 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 11/163 (6%)

Query: 133 TALHTASSQGHV-EVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSK-- 187
             LH A  +    +V + L  K    + +     +G+  LH +      EI   LLSK  
Sbjct: 4   YPLHQACMENEFFKVQELLHSKP---SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELV-KVEPVIINMVDAKGNSALHIATRKGRV 246
              +    D  G T  H+A    ++E+V  L  +     +N +  +G + LH+A  K   
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 247 Q--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           +  + L  NG    + +K  +  L  A   G  ++  +L   G
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 89.0 bits (222), Expect = 2e-20
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV--E 222
               LH A        V+ LL  +P ++L+ D+ G+  LH +V  Q+ E+   L+     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 223 PVIINMVDAKGNSALHIATRKGRVQ--KLL--NINGVDKAVINKSRETALDTAEKTGHSE 278
             + +  D  G +  HIA   G ++  K L       D   I     T L  A      E
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 279 IGVILKEHG 287
           +   L E+G
Sbjct: 122 VSQFLIENG 130

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  158 bits (402), Expect = 2e-45
 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 15/232 (6%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKIL 116
            + G++ L++A  +    +  E+IR     LA +  +        H+A      E+ + L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN-----GKTAL 169
           +     PEL    D    T LH A  QG +  V  L +  +T    +        G T L
Sbjct: 65  LGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 170 HSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMV 229
           H A+ +G+L IV+ L+S    +  +    G+TALH+AV  Q+ +LV  L+K    + N V
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRV 180

Query: 230 DAKGNSALHIATRKGR--VQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
             +G S   +   +    +Q+ L    ++   +    E       ++  +E 
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  139 bits (352), Expect = 4e-38
 Identities = 48/242 (19%), Positives = 93/242 (38%), Gaps = 26/242 (10%)

Query: 15  KKQLTAKRDDTPLQSLVRTGSVELVLDMIS---SYGDMELREMLSKMNQSGETALYVAAE 71
           K+QLT +  D+ L   +      L +++I              L+  N   +T L++A  
Sbjct: 1   KQQLT-EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLAVI 54

Query: 72  YGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTF 127
               ++   ++            +   G    H+A +QGCL  + +L +    P L    
Sbjct: 55  TNQPEIAEALLGAG----CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

Query: 128 DSSNT---TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL 184
            ++N    T LH AS  G++ +V+ L+  G+ +      NG+TALH A    + ++V  L
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170

Query: 185 LSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR 242
           L     +   N    +G +   +     S  +  +L ++  +    +  +        T 
Sbjct: 171 LKCGADV---NRVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTE 226

Query: 243 KG 244
             
Sbjct: 227 SE 228

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  118 bits (299), Expect = 8e-31
 Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 19/201 (9%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL   V T   E+   ++ +  D ELR      +  G T L++A E G +  V  + + 
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPELR------DFRGNTPLHLACEQGCLASVGVLTQS 100

Query: 85  --HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140
                  + +KA N  G+   H+A+  G L ++++L+    ++      +  TALH A  
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160

Query: 141 QGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGI-VLRNDK 197
             + ++V  LL+ G   A +   +  G +            I + L      +  L+   
Sbjct: 161 LQNPDLVSLLLKCG---ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL--TLENLQMLP 215

Query: 198 KGQTALHMAVKGQSIELV-DE 217
           + +       + +  E   DE
Sbjct: 216 ESEDEESYDTESEFTEFTEDE 236

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  161 bits (408), Expect = 7e-45
 Identities = 49/262 (18%), Positives = 86/262 (32%), Gaps = 47/262 (17%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
                 A  +AAE G++ ++  +     T +  +     Y AF +AA+ G L VL  L E
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 184

Query: 119 ALPELL-MTFDSSNTTALHTASSQ-GHVEVVKFLLEKGSTLAT---IARSNG-------- 165
             P        + N  A   A+   GH  V+ FLL+    LA         G        
Sbjct: 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFI 244

Query: 166 ----------KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG---QSI 212
                       A   +  +G  ++V                +G   L   ++      +
Sbjct: 245 ARHVNRLKEMHDAFKLSNPDGVFDLVTKS----------ECLQGFYMLRNLIRRNDEVLL 294

Query: 213 ELVDELVKVEPVI----INMVDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSRE 265
           + +  L+ +  +        +    N  L +A R G       LL+I     +V+  ++ 
Sbjct: 295 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI----PSVLALTKA 350

Query: 266 TALDTAEKTGHSEIGVILKEHG 287
                 E  G  ++  +  EH 
Sbjct: 351 NNYYINETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (253), Expect = 2e-23
 Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 25/279 (8%)

Query: 80  EMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139
           E I         ++        + A         K L     +  +  +     A  T  
Sbjct: 48  EAIHIFLPGTKNMEQVRQLLCLYYAH---YNRNAKQLWSDAHKKGIKSEVICFVAAITGC 104

Query: 140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN-DKK 198
               ++ +  LL     +  I ++    A   AA NGHL ++  L    P  ++     +
Sbjct: 105 -SSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 162

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVI-INMVDAKGNSALHI-ATRKG--RVQKLLNING 254
              A  +A +   + +++ L ++ P     M+ A+   A    A  +G   V   L    
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222

Query: 255 VDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANSARELKQAVSDIKHE 314
           V  A        A     + G   +   +  H      +   + + A   K +  D   +
Sbjct: 223 VMLA-------YAEIHEFEYGEKYVNPFIARHV-----NRLKEMHDA--FKLSNPDGVFD 268

Query: 315 VHDQLEHTRETRKHVHGIAKRINKMHTEGLNNAINSTTV 353
           +  + E   +    +  + +R +++  + +   ++   +
Sbjct: 269 LVTKSEC-LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGI 306

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 94.6 bits (235), Expect = 3e-21
 Identities = 36/266 (13%), Positives = 75/266 (28%), Gaps = 46/266 (17%)

Query: 16  KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYV 75
            ++    +    +     G + ++  +        +    + +      A  +AAE G++
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM----AMIQAENYHAFRLAAENGHL 176

Query: 76  DMVREMIRYH-DTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTA 134
            ++  +       + A I+A N Y     A  +G   V+  L++               A
Sbjct: 177 HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--------PVMLAYA 228

Query: 135 LHTASSQGHVEVVKFLLEKGSTLATI-------------------ARSNGKTALHSAARN 175
                  G   V  F+    + L  +                       G   L +  R 
Sbjct: 229 EIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRR 288

Query: 176 GH---LEIVKALLSKEPGIVL----RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINM 228
                L+ ++ LLS      L             L +A++  +      L+ +  V    
Sbjct: 289 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV---- 344

Query: 229 VDAKGNSALHIATRKGR---VQKLLN 251
           +     +  +I    GR       L 
Sbjct: 345 LALTKANNYYINETGGRLDLRAVALE 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  158 bits (403), Expect = 6e-44
 Identities = 51/275 (18%), Positives = 93/275 (33%), Gaps = 33/275 (12%)

Query: 42  MISSYGDMELREML----SKMNQS--GETALYVAAEYGYVDMVREMIRYHDTSLAG---- 91
              + G   + E +      +       T L+  A     +   ++I +           
Sbjct: 99  HTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 92  --IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVV 147
                 +      +A       ++  LM+  A P     ++ S  +ALH A++     ++
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT---IYNKSERSALHQAAANRDFGMM 215

Query: 148 KFLLEKGSTLATI-ARSN-GKTALHSAARNGHLE---IVKALLSK-------EPGIVLRN 195
            ++L        I      G TAL   A N   +     K L+ K               
Sbjct: 216 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275

Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQKLLNI 252
             KG+TALH A +  ++ +V  LV  +    +  D  G + + +A ++GR   V  L+  
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ- 334

Query: 253 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
            G     ++ +  TA   A+   H  I  I     
Sbjct: 335 QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  142 bits (359), Expect = 9e-38
 Identities = 52/253 (20%), Positives = 100/253 (39%), Gaps = 27/253 (10%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELRE--MLSKMNQSGETALYVAAEYGYVDMVREMI 82
           T L  +    S E   D+I       +     ++ M+    T L +A       +V  ++
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 83  RYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILMEALPEL--LMTFDSSNTTALH 136
                  AG    I  ++   A H AA      ++  ++ +      +   D +  TAL 
Sbjct: 187 ------KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 240

Query: 137 TASSQGH---VEVVKFLLEKG-------STLATIARSNGKTALHSAARNGHLEIVKALLS 186
             +       V   K L+EKG       +      +  G+TALH AA+  ++ IVK L+ 
Sbjct: 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300

Query: 187 KEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR- 245
           ++     + D+ G+T + +A +   IE+V  L++     +  VDA  ++A  +A      
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHH 359

Query: 246 -VQKLLNINGVDK 257
            +  + +    ++
Sbjct: 360 NIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  129 bits (327), Expect = 2e-33
 Identities = 47/303 (15%), Positives = 88/303 (29%), Gaps = 53/303 (17%)

Query: 3   PPSEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSG 62
           PP E ++  +K  + +T+ +    L      G ++   + +  Y                
Sbjct: 19  PPMENEEKNRKNHQSITSSQ--HSLLEASYDGYIKRQRNELQHYS--------------- 61

Query: 63  ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLKILMEAL 120
                     G   +         T+L              H  A  G   + + +    
Sbjct: 62  LYPNPQGYGNGNDFLGDFNH----TNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRES 116

Query: 121 PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL-----ATI--ARSNGKTALHSAA 173
             ++      N T LH  +S    E  + L+   +       A +     +  T L  A 
Sbjct: 117 VNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAV 174

Query: 174 RNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVI--INMV 229
                 +V  L+            +K  ++ALH A   +   ++  ++    +   I  +
Sbjct: 175 LARRRRLVAYLMKAGADP---TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 231

Query: 230 DAKGNSALHIATRKG-----RVQKLL-----NINGVDKAVI---NKSRETALDTAEKTGH 276
           D  G +AL I             KLL      ++    A          TAL  A +  +
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291

Query: 277 SEI 279
             I
Sbjct: 292 MPI 294

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 21/163 (12%), Positives = 39/163 (23%), Gaps = 49/163 (30%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
            +S+  +L  AS  G+++  +  L+                      NG+  +     + 
Sbjct: 34  ITSSQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGNDFLGDFNHTN 83

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
              I    + +    LH    G S  +                                 
Sbjct: 84  L-QIPTEPEPESPIKLHTEAAG-SYAIT-------------------------------- 109

Query: 248 KLLNINGVDKAVINKSR--ETALDTAEKTGHSEIGVILKEHGV 288
           + +    V+   I   R   T L        +E    L  H  
Sbjct: 110 EPITRESVN---IIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 149

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  155 bits (394), Expect = 1e-43
 Identities = 52/238 (21%), Positives = 91/238 (38%), Gaps = 25/238 (10%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKIL 116
             S  + ++ AA +G+   +R +I         +     +     H A   G L  +KIL
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQG----WAVNIITADHVSPLHEACLGGHLSCVKIL 111

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSNGKTALHSAA 173
           ++  A         +   T L  A   G  + V  LL+ G   A++   S+  + +H AA
Sbjct: 112 LKHGAQVN---GVTADWHTPLFNACVSGSWDCVNLLLQHG---ASVQPESDLASPIHEAA 165

Query: 174 RNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
           R GH+E V +L++    I   +       T L++A + Q    V +L++     +N    
Sbjct: 166 RRGHVECVNSLIAYGGNI---DHKISHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GK 220

Query: 232 KGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
             +S LH   R    +   LL   G D    N   +  ++           + L+  G
Sbjct: 221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ-LFLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  147 bits (373), Expect = 1e-40
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 31/235 (13%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--A 119
           G          G   +   ++           A + +   H AA  G    L+ L+    
Sbjct: 33  GSKPAGPRDFPGIRLLSNPLM---------GDAVSDWSPMHEAAIHGHQLSLRNLISQGW 83

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGH 177
                    + + + LH A   GH+  VK LL+ G   A +    ++  T L +A  +G 
Sbjct: 84  AVN---IITADHVSPLHEACLGGHLSCVKILLKHG---AQVNGVTADWHTPLFNACVSGS 137

Query: 178 LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSAL 237
            + V  LL    G  ++ +    + +H A +   +E V+ L+      I+   +   + L
Sbjct: 138 WDCVNLLLQH--GASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPL 194

Query: 238 HIATRKGR---VQKLLNINGVDKAVINKSR--ETALDTAEKTGHSEIGVILKEHG 287
           ++A    +   V+KLL  +G D   +N+ +  ++ L    +T   E+  +L + G
Sbjct: 195 YLACENQQRACVKKLLE-SGAD---VNQGKGQDSPLHAVVRTASEELACLLMDFG 245

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  145 bits (369), Expect = 5e-40
 Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 34/252 (13%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A  D +P+      G    + ++IS    +        +     + L+ A   G++  V+
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVN------IITADHVSPLHEACLGGHLSCVK 109

Query: 80  EMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTT 133
            +++       G        + +     A   G  + + +L++  A  +     +S   +
Sbjct: 110 ILLK------HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP----ESDLAS 159

Query: 134 ALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGI 191
            +H A+ +GHVE V  L+  G     I    S+  T L+ A  N     VK LL    G 
Sbjct: 160 PIHEAARRGHVECVNSLIAYG---GNIDHKISHLGTPLYLACENQQRACVKKLLES--GA 214

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR-VQKLL 250
            +   K   + LH  V+  S EL   L+          +A+G   + +   +    Q  L
Sbjct: 215 DVNQGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPESPLAQLFL 273

Query: 251 NINGVDKAVINK 262
              G     + K
Sbjct: 274 EREGAS---LPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  128 bits (325), Expect = 6e-34
 Identities = 45/233 (19%), Positives = 78/233 (33%), Gaps = 33/233 (14%)

Query: 68  VAAEYGYVDMVREMIRY---HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELL 124
           + + + +      ++       +        +G          G   +   LM       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD----- 55

Query: 125 MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVK 182
                S+ + +H A+  GH   ++ L+ +G     +    ++  + LH A   GHL  VK
Sbjct: 56  ---AVSDWSPMHEAAIHGHQLSLRNLISQG---WAVNIITADHVSPLHEACLGGHLSCVK 109

Query: 183 ALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVK----VEPVIINMVDAKGNSAL 237
            LL    G  V        T L  A    S + V+ L++    V+P      ++   S +
Sbjct: 110 ILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP------ESDLASPI 161

Query: 238 HIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           H A R+G    V  L+   G +         T L  A +         L E G
Sbjct: 162 HEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  150 bits (382), Expect = 1e-42
 Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 20/228 (8%)

Query: 19  TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMV 78
             K     +   + T       ++    GD+        +    +T  +     G   ++
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDII------YITDMSDTNWWKGTSKGRTGLI 61

Query: 79  REMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALH 136
                         +A +  +  H AAK+G L  L+  ++       L   D + +TAL+
Sbjct: 62  PSNYVA-------EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL---DKAGSTALY 111

Query: 137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND 196
            A   GH ++V+ L  + +         G TALH+AA  G+ +IV+ LL+K     LR +
Sbjct: 112 WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-N 170

Query: 197 KKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG 244
            + + A  MA       L+ +    +  +  + +A+       +  + 
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  150 bits (381), Expect = 1e-42
 Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 12/224 (5%)

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLK 114
             K  + G+  ++ A          E+       +           +     +G   ++ 
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIY--ITDMSDTNWWKGTSKGRTGLIP 62

Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
               A          S    LH A+ +G++  ++  L+    +       G TAL+ A  
Sbjct: 63  SNYVAEQ------AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACH 115

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
            GH +IV+ L ++    + + +K G TALH A      ++V  L+       ++ + +  
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKK 174

Query: 235 SALHIATRKGR--VQKLLNINGVDKAVINKSRETALDTAEKTGH 276
            A  +AT      + K        + + N       + ++   H
Sbjct: 175 LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  134 bits (339), Expect = 1e-36
 Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 14/199 (7%)

Query: 94  ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
            + G      A           L     +++      + T     +S+G   ++      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIPSNYVA 67

Query: 154 GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQS 211
                     +    LH AA+ G+L  ++  L    G+   N  DK G TAL+ A  G  
Sbjct: 68  EQA------ESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGH 118

Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALD 269
            ++V+ L     + +N  +  G++ALH A  KG     +LL   G    + N  ++ A D
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178

Query: 270 TAEKTGHSEIGVILKEHGV 288
            A     + +    +    
Sbjct: 179 MATNAACASLLKKKQGTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 12  KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAE 71
                   A+  D PL    + G++  + + + +   +         +++G TALY A  
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL------DKAGSTALYWACH 115

Query: 72  YGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTF 127
            G+ D+V  +    +     +  +N  G  A H AA +G  +++++L+   A  +L    
Sbjct: 116 GGHKDIVEMLFTQPN---IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR--- 169

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL 178
           +     A   A++     ++K      +   T++ +        +    H 
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVR-TLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 22/128 (17%)

Query: 166 KTALHSAARNG-----------HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL 214
                   + G                  L  +E G ++       T            L
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEE-GDIIYITDMSDTNWWKGTSKGRTGL 60

Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTA 271
           +          +       ++ LH A ++G    +++ L+ N V    ++K+  TAL  A
Sbjct: 61  IPSN------YVAEQAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWA 113

Query: 272 EKTGHSEI 279
              GH +I
Sbjct: 114 CHGGHKDI 121

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  151 bits (383), Expect = 2e-42
 Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 25/247 (10%)

Query: 59  NQSGETALYVAAEYGYVDMVR---------EMIRY---HDTSLAGIKARNGYDAFHIAAK 106
              G T L +A+  G                +I        SL     R G  A H+AA+
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 107 QGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN 164
               +  K L+E  A   +    D+   T LH A S     V + L+   +T       +
Sbjct: 67  YSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVE 222
           G T L  AAR     +++ L++    +   N  D  G++ALH A    +++    L+K  
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADV---NAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 223 PVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIG 280
               +M + +  + L +A R+G  +  K+L  +  ++ + +       D A++  H +I 
Sbjct: 181 -ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 239

Query: 281 VILKEHG 287
            +L    
Sbjct: 240 RLLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  139 bits (354), Expect = 3e-38
 Identities = 49/250 (19%), Positives = 90/250 (36%), Gaps = 31/250 (12%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREML--------SKMNQSGETALYVAAEYGYVD 76
           TPL     +G      +         +            ++ +++GETAL++AA Y   D
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71

Query: 77  MVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT 132
             + ++       A     I+   G    H A       V +IL+      L       T
Sbjct: 72  AAKRLL------EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPG 190
           T L  A+      +++ L+      A + A  + GK+ALH AA   +++    LL     
Sbjct: 126 TPLILAARLAVEGMLEDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--V 246
               +  + + +T L +A +  S E    L+       ++ D        IA  +    +
Sbjct: 183 K---DMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDI 238

Query: 247 QKLLNINGVD 256
            +LL++    
Sbjct: 239 VRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (305), Expect = 2e-31
 Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 28/200 (14%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           ++  +G+    IA+  G                           ++   +    V+   +
Sbjct: 5   VRGPDGFTPLMIASCSG---------------------GGLETGNSEEEEDAPAVISDFI 43

Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
            +G++L       G+TALH AAR    +  K LL         N  D  G+T LH AV  
Sbjct: 44  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSA 100

Query: 210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETA 267
            +  +   L++     ++     G + L +A R       + L  +  D   ++   ++A
Sbjct: 101 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160

Query: 268 LDTAEKTGHSEIGVILKEHG 287
           L  A    + +  V+L ++G
Sbjct: 161 LHWAAAVNNVDAAVVLLKNG 180

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  104 bits (261), Expect = 2e-25
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKIL 116
              G T L +AA      M+ ++I  H    A + A    G  A H AA    ++   +L
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSH----ADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSA 172
           ++  A  ++    ++   T L  A+ +G  E  K LL+     A         +     A
Sbjct: 177 LKNGANKDMQ---NNREETPLFLAAREGSYETAKVLLDHF---ANRDITDHMDRLPRDIA 230

Query: 173 ARNGHLEIVKALLSKEPGIVLRN 195
               H +IV+ L  +       +
Sbjct: 231 QERMHHDIVRLLDLEHHHHHHHH 253

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  151 bits (385), Expect = 3e-42
 Identities = 49/259 (18%), Positives = 98/259 (37%), Gaps = 27/259 (10%)

Query: 40  LDMISSYGDMELREMLS-----KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA 94
           L  I+++   +L+  LS     K +  G +A Y A     V +V  ++       A    
Sbjct: 4   LSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG----ALKNL 59

Query: 95  RNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
                  H AA     +++KIL+           FD    TAL+ A   G+++ VK  ++
Sbjct: 60  LENEFPLHQAATLEDTKIVKILLFSGLDDS---QFDDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI 212
           K   L    ++  KT+ + A     + IV   LS+       +     + +H+ +K   +
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLSCIHITIKNGHV 174

Query: 213 ELVDELVKVEPVIINMVDAKGNS-ALHIATRKGRVQ--KLLNINGVDKAVINKSRETALD 269
           +++  L+       N  ++      + +A     ++  + L    ++   I     +A  
Sbjct: 175 DMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN---IY----SANL 226

Query: 270 TAEKTGHSEIGVILKEHGV 288
                  +EI  ++ E  V
Sbjct: 227 ENVLLDDAEIAKMIIEKHV 245

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  113 bits (284), Expect = 3e-28
 Identities = 26/202 (12%), Positives = 64/202 (31%), Gaps = 19/202 (9%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
            + +T L   V +G+++ V   +     +             +T+ Y A     V +V  
Sbjct: 93  DKGNTALYYAVDSGNMQTVKLFVKKNWRLM-----FYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 81  MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140
            +       +           HI  K G ++++ +L++ +              +  A  
Sbjct: 148 FLSEIP---STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID 204

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKG 199
              +E+++ L +           N  +A          EI K ++ K   +    +    
Sbjct: 205 NKDIEMLQALFKYDI--------NIYSANLENVLLDDAEIAKMIIEK--HVEYKSDSYTK 254

Query: 200 QTALHMAVKGQSIELVDELVKV 221
              +    K   I   ++ +++
Sbjct: 255 DLDIVKNNKLDEIISKNKELRL 276

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  153 bits (388), Expect = 6e-42
 Identities = 44/292 (15%), Positives = 92/292 (31%), Gaps = 47/292 (16%)

Query: 20  AKRDDTPLQSLVRTGSVELV--------------LDMISSYGDMELREM-LSKMNQSGET 64
                 P+   V     +LV                +++   + E+ E+     +  G+T
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT 140

Query: 65  ALYVAAEYG--YVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILMEAL 120
           AL+     G  Y++M++ +++      A    K +        A +    E L ++M+ +
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLG----ASPTAKDKADETPLMRAMEFRNREALDLMMDTV 196

Query: 121 PEL----LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAAR 174
           P      L   +    + LH A      +V    +E G     +    N     L+ + R
Sbjct: 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG---IDVNMEDNEHTVPLYLSVR 253

Query: 175 NGHLEIVKALLSKEPGI------------VLRNDKKGQTALHMAVKGQSIELVDELVKVE 222
              + + K LL K                VL +       +  A      E++  L +  
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313

Query: 223 PVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVINKSRETALDTAE 272
              +      G        +K    V+++           ++SR  +   ++
Sbjct: 314 -DEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  151 bits (384), Expect = 2e-41
 Identities = 48/274 (17%), Positives = 96/274 (35%), Gaps = 39/274 (14%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             +    R G  + V  +I +     ++      N+ G TAL++A ++G VD  + +   
Sbjct: 22  EKIHVAARKGQTDEVRRLIETGVSPTIQ------NRFGCTALHLACKFGCVDTAKYLAS- 74

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV 144
                      +G    H+A      +++  L+E                    +     
Sbjct: 75  VG---EVHSLWHGQKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDER 124

Query: 145 EVVKFLLEKGSTLATIARSNGKTALHSAARNG--HLEIVKALLSKEPGIVLRN--DKKGQ 200
           EV +           +    G+TALH     G  +LE++K L+            DK  +
Sbjct: 125 EVNEIGSH-------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP---TAKDKADE 174

Query: 201 TALHMAVKGQSIELVDELVKVEPVI----INMVDAKGNSALHIATRKGR---VQKLLNIN 253
           T L  A++ ++ E +D ++   P      ++  + +GNS LH A          + +   
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-M 233

Query: 254 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           G+D  + +      L  + +     +   L +  
Sbjct: 234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  145 bits (367), Expect = 6e-39
 Identities = 45/242 (18%), Positives = 78/242 (32%), Gaps = 37/242 (15%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
           +      ++VAA  G  D VR +I            +N  G  A H+A K GC++  K L
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETG----VSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
                +              +H A      ++V  L+E            G+        
Sbjct: 73  ASVGEVHS-----LWHGQKPIHLAVMANKTDLVVALVEGAK-------ERGQMPESLLNE 120

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK--GQSIELVDELVKVEPVIINMVDAK 232
               E+ +               KGQTALH  V    + +E++  LV++        D  
Sbjct: 121 CDEREVNEIGSHV-------KHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKA 172

Query: 233 GNSALHIATRKGR---VQKLLNI----NGVDKAVINKSRETALDTAEKTGHSEIGVILKE 285
             + L  A        +  +++     + +     NK   + L  A      ++ +   E
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 286 HG 287
            G
Sbjct: 233 MG 234

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  138 bits (349), Expect = 2e-36
 Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 26/193 (13%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
                 +  H+AA++G  + ++ L+E    P      +    TALH A   G V+  K+L
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPT---IQNRFGCTALHLACKFGCVDTAKYL 72

Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210
              G      +  +G+  +H A      ++V AL+           ++GQ    +  +  
Sbjct: 73  ASVG---EVHSLWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNECD 122

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGR----VQKLLNINGVDKAVINKSRET 266
             E+ +       +  ++   KG +ALH     G     + K+L   G      +K+ ET
Sbjct: 123 EREVNE-------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADET 175

Query: 267 ALDTAEKTGHSEI 279
            L  A +  + E 
Sbjct: 176 PLMRAMEFRNREA 188

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 218 LVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTG 275
           +     +     D +    +H+A RKG+    + L   GV   + N+   TAL  A K G
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 276 HSEIGVILKEHG 287
             +    L   G
Sbjct: 65  CVDTAKYLASVG 76

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  148 bits (376), Expect = 4e-41
 Identities = 52/272 (19%), Positives = 94/272 (34%), Gaps = 26/272 (9%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           T L   V       +  ++         E L   N  G+TAL++AA  G    V ++   
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAG---HEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 85  HDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILMEA-------------LPELLMTFDS 129
                AG+    R G+ A H+A +        +L++                    T D+
Sbjct: 68  G----AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP 189
           S+  A   +      E      +    L      +G T LH A  +   E+V+ L     
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 190 GIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ-- 247
            +       G+T LH+AV+ Q+  +++ L+K            G + L  A  +      
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILA 241

Query: 248 KLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
           +LL  +G  +      + +   ++     S+ 
Sbjct: 242 RLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  137 bits (348), Expect = 4e-37
 Identities = 48/253 (18%), Positives = 83/253 (32%), Gaps = 26/253 (10%)

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEV 112
              + + G+TAL++A  + +   +  ++         +  +N  G  A H+AA  G    
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 113 LKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG------------STLA 158
           ++ L    A   +    +    TALH A           LL+              +   
Sbjct: 61  VEKLYAAGAGVLVA---ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 159 TIARSNGKT-ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE 217
                     A   +  N   E           +    +  G T LH+AV  +  E+V  
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRL 176

Query: 218 LVKVEPVIINMVDAK-GNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKT 274
           L       +N  +   G + LH+A         +LL   G D         T L +A   
Sbjct: 177 LRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

Query: 275 GHSEIGVILKEHG 287
            +  +  +L+ HG
Sbjct: 236 PNPILARLLRAHG 248

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  117 bits (296), Expect = 6e-30
 Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 20/208 (9%)

Query: 25  TPLQSLVRTGSVELV-------LDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDM 77
           T L    R  +                   D  L +       +      V ++    + 
Sbjct: 80  TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139

Query: 78  VREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL 135
                         ++A N       H+A      E++++L +A  +L     +   T L
Sbjct: 140 EEPRDEDWR---LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196

Query: 136 HTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGI-V 192
           H A       V++ LL+ G   A        G+T L SA    +  + + L +   G   
Sbjct: 197 HLAVEAQAASVLELLLKAG---ADPTARMYGGRTPLGSALLRPNPILARLLRAH--GAPE 251

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVK 220
             +     +    +      +  DE  +
Sbjct: 252 PEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 98.4 bits (246), Expect = 4e-23
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 17/137 (12%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN---GYDAFHIAAKQGCLEVLKI 115
           N  G T L+VA  +   +MVR +        A +       G    H+A +     VL++
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAG----ADLNKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 116 LME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHS 171
           L++  A P           T L +A  + +  + + L   G   A          +   S
Sbjct: 211 LLKAGADPTAR---MYGGRTPLGSALLRPNPILARLLRAHG---APEPEDGGDKLSPCSS 264

Query: 172 AARNGHLEIVKALLSKE 188
           +  +   +        +
Sbjct: 265 SGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.1 bits (222), Expect = 6e-20
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           +G TALH A  + H   +  LL    G    +  +  GQTALH+A        V++L   
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQ--KLL-------NINGVDKAVINK-------SRE 265
               + + +  G++ALH+A R        +L         +  D  +          S  
Sbjct: 68  G-AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 266 TALDTAEKTGHSEIGVILKEHGV 288
            A   ++    +E     ++  +
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRL 149

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 225 IINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVIN---KSRETALDTAEKTGHSEI 279
           +   V   G++ALH+A           L         ++      +TAL  A   G +  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 280 GVILKEHG 287
              L   G
Sbjct: 61  VEKLYAAG 68

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  148 bits (377), Expect = 6e-41
 Identities = 61/272 (22%), Positives = 108/272 (39%), Gaps = 28/272 (10%)

Query: 23  DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
           D     +   +G  E VL ++    D+         N  G TAL+ A     VDMV+ ++
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYA------NVDGLTALHQACIDDNVDMVKFLV 93

Query: 83  RYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA 138
                   G         G+   H AA  G L++ + L+     +    +S   T L  A
Sbjct: 94  EN------GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIA 146

Query: 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
             +   E+++  + +          + + A     R    +  + L S     V R+ K 
Sbjct: 147 EEEAMEELLQNEVNRQG-------VDIEAARKEEERIMLRDARQWLNSGHINDV-RHAKS 198

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVD 256
           G TALH+A      E++  L++     +N+ D  G + LH A   G+ +  ++L  N  D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257

Query: 257 KAVINKSRETALDTAEKTGHSEIGVILKEHGV 288
              +NK  +TA D A++     +  + K+  +
Sbjct: 258 MEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  134 bits (341), Expect = 6e-36
 Identities = 53/276 (19%), Positives = 95/276 (34%), Gaps = 29/276 (10%)

Query: 18  LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDM 77
           +   +     Q     GS   +   +            +K+          A   G  + 
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKK-------TKVKFDDGAVFLAACSSGDTEE 55

Query: 78  VREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTT 133
           V  ++       A I   N  G  A H A     ++++K L+E  A        D+    
Sbjct: 56  VLRLLERG----ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP---DNEGWI 108

Query: 134 ALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVL 193
            LH A+S G++++ ++L+ +G+ +     S G T L  A      E+++  +++      
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNR------ 161

Query: 194 RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLN 251
                 + A     +    +    L     +        G +ALH+A  KG  +  KLL 
Sbjct: 162 -QGVDIEAARKEEERIMLRDARQWLNSGH-INDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 252 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
               D  + +    T L  A   G  E   IL E+ 
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  133 bits (337), Expect = 2e-35
 Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 23/204 (11%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           +          +    G    L+  +    +  + FD         A S G  E V  LL
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG--AVFLAACSSGDTEEVLRLL 60

Query: 152 EKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAV 207
           E+G   A I  A  +G TALH A  + ++++VK L+     I   N  D +G   LH A 
Sbjct: 61  ERG---ADINYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAA 114

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSR 264
               +++ + L+      +  V+++G++ L IA  +     +Q  +N  GVD        
Sbjct: 115 SCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI------- 166

Query: 265 ETALDTAEKTGHSEIGVILKEHGV 288
           E A    E+    +    L    +
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHI 190

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  128 bits (324), Expect = 1e-33
 Identities = 44/212 (20%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           +  G   L+ AA  GY+D+   +I      +       G     IA ++   E+L+  + 
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLIS-QGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN--GKTALHSAARNG 176
                +         A          +  ++L           R    G TALH AA  G
Sbjct: 161 RQGVDIEA-------ARKEEERIMLRDARQWLNSGH---INDVRHAKSGGTALHVAAAKG 210

Query: 177 HLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
           + E++K L+     +   N  D  G T LH A      E    LV+     +  V+  G 
Sbjct: 211 YTEVLKLLIQARYDV---NIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQ 266

Query: 235 SALHIATRKGRVQKLLNINGVDK-AVINKSRE 265
           +A  +A         L      +  + ++ RE
Sbjct: 267 TAFDVADEDIL--GYLEELQKKQNLLHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.1 bits (222), Expect = 7e-20
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 40  LDMISSYGDMELREML-SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARN 96
           LD+       EL +   ++     E A          D  + +   H          A++
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH----INDVRHAKS 198

Query: 97  GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
           G  A H+AA +G  EVLK+L++      +    D    T LH A+  G  E  + L+E  
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIK---DYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 155 STLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKK 198
                + A +  G+TA   A  +    + +    +      + +KK
Sbjct: 256 ---CDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKK 298

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  146 bits (372), Expect = 8e-40
 Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 51/303 (16%)

Query: 19  TAKRDDTPLQSLVRTGSVELVLDMISSYG-DMELREMLSKMNQSGETALYVAAEYGYVDM 77
           T +     L    R+G+ E ++ +++    +          +    T L++AA Y  V +
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS------DGRKSTPLHLAAGYNRVRI 73

Query: 78  VREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSN 131
           V+ ++++      G     K + G    H A   G  EV ++L++  A        D   
Sbjct: 74  VQLLLQH------GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN---AMDLWQ 124

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP-- 189
            T LH A+S+  VEV   LL  G+   T+   +GK+A+  A      E +          
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183

Query: 190 ------------------GIVLRNDKKGQTALHMAVK---GQSIELVDELVKVEPVIINM 228
                              I  +  +  +TALH AV     +  ++ + L++     +N 
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNE 242

Query: 229 VDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 285
            +    + LH+A  +     ++ L   +G     ++   +TAL  A   GH +   +L  
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301

Query: 286 HGV 288
           +G 
Sbjct: 302 YGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  146 bits (370), Expect = 2e-39
 Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 49/265 (18%)

Query: 44  SSYGDMELREML-------SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----I 92
            SYG  E+ E+L       + M+    T L+ AA    V++   ++ +      G    +
Sbjct: 99  CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH------GADPTL 152

Query: 93  KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
              +G  A  +A      E L                   + L  A+ +  +  VK  L 
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEF------------KGHSLLQ-AAREADLAKVKKTLA 199

Query: 153 KGSTLATIARSN-GKTALHSAARNGH---LEIVKALLSKEPGIVLRN--DKKGQTALHMA 206
                    +    +TALH A  + H    ++ + LL K   +   N  +K   T LH+A
Sbjct: 200 LEI--INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV---NEKNKDFMTPLHVA 254

Query: 207 VKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSR 264
            +    ++++ L K     +N +D+ G +ALH A   G +Q  +LL   G D ++I+   
Sbjct: 255 AERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313

Query: 265 ETALDTAEKTGHSEIGVILKEHGVP 289
            TA         +E    +     P
Sbjct: 314 FTAAQMG-----NEAVQQILSESTP 333

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (307), Expect = 8e-31
 Identities = 46/236 (19%), Positives = 78/236 (33%), Gaps = 43/236 (18%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQG-CLEVLKILME-- 118
           G++AL +A                      +      D    AA+ G   +++ +L    
Sbjct: 4   GKSALDLADPSAKAV---------------LTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNG 176
                    D   +T LH A+    V +V+ LL+ G   A +      G   LH+A   G
Sbjct: 49  VNCH---ASDGRKSTPLHLAAGYNRVRIVQLLLQHG---ADVHAKDKGGLVPLHNACSYG 102

Query: 177 HLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNS 235
           H E+ + LL    G  V   D    T LH A     +E+   L+        +V+  G S
Sbjct: 103 HYEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG-ADPTLVNCHGKS 159

Query: 236 ALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP 289
           A+ +A      +                    + L  A +   +++   L    + 
Sbjct: 160 AVDMAPTPELRERLTYEFKGH-----------SLLQAAREADLAKVKKTLALEIIN 204

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  117 bits (296), Expect = 3e-29
 Identities = 53/250 (21%), Positives = 90/250 (36%), Gaps = 47/250 (18%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
               TPL        VE+   ++S   D  L       N  G++A+ +A      + +  
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLV------NCHGKSAVDMAPTPELRERLTY 175

Query: 81  MIRY----HDTSLAGIKA---------------RNGYDAFHIAAKQG---CLEVLKILME 118
             +          A +                 ++   A H A         +V ++L+ 
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235

Query: 119 --ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAAR 174
             A        +    T LH A+ + H +V++ L + G   A + A  + G+TALH AA 
Sbjct: 236 KGANVNEK---NKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLGQTALHRAAL 289

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGN 234
            GHL+  + LLS      +    +G TA  M       E V +++  E   +   D    
Sbjct: 290 AGHLQTCRLLLSYGSDPSII-SLQGFTAAQMGN-----EAVQQIL-SESTPMRTSDVDY- 341

Query: 235 SALHIATRKG 244
             L  A++ G
Sbjct: 342 -RLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 25/147 (17%)

Query: 164 NGKTALH---------------------SAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
            GK+AL                      +A      +++  L           D +  T 
Sbjct: 3   FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTP 61

Query: 203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVI 260
           LH+A     + +V  L++     ++  D  G   LH A   G  +  +LL  +G     +
Sbjct: 62  LHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120

Query: 261 NKSRETALDTAEKTGHSEIGVILKEHG 287
           +  + T L  A      E+  +L  HG
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHG 147

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 24/114 (21%)

Query: 197 KKGQTALHM---------------------AVKGQSIELVDELVKVEPVIINMVDAKGNS 235
           + G++AL +                     A  G   +L+  L  +  V  +  D + ++
Sbjct: 2   EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN-VNCHASDGRKST 60

Query: 236 ALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
            LH+A    RV+  +LL  +G D    +K     L  A   GH E+  +L +HG
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  123 bits (311), Expect = 1e-32
 Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 53/228 (23%)

Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTF-------DSSNTTALHTASSQGHVEVVKFLLE 152
              +AAK+  ++ L        +LL           +   TALH A+   ++E    L+E
Sbjct: 6   PLLLAAKENDVQALS-------KLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 153 KGSTLATIAR----SNGKTALHSAARNGHLEIVKALLSK------------EPGIVLRND 196
               L           G+TALH A  N ++ +V+ALL++                     
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 197 KKGQTALHMAVKGQSIELVDELVKVEPVI-----INMVDAKGNSALHIATRKGR------ 245
             G+  L  A    S E+V  L      I     I   D+ GN+ LHI   +        
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLL------IEHGADIRAQDSLGNTVLHILILQPNKTFACQ 172

Query: 246 VQKLL-----NIN-GVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           +  LL       +    + V N    T    A   G+  +   L +  
Sbjct: 173 MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 19/142 (13%)

Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK---- 220
            ++ L  AA+   ++ +  LL  E   V +    G+TALH+A    ++E    L++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQ--KLL-----NINGVDK--------AVINKSRE 265
           +    +     +G +ALHIA     V   + L     +++              +    E
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 266 TALDTAEKTGHSEIGVILKEHG 287
             L  A   G  EI  +L EHG
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHG 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  141 bits (359), Expect = 2e-39
 Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 17/206 (8%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
           +K          A ++   +V +IL +     +     D+   T L+ A     +E+ K 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 150 LLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV 207
           L+++G   A I    S   +    A   G  EI+  +L      + ++++ G  AL  A 
Sbjct: 58  LIDRG---ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA 114

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ-------KLLNINGVDKAVI 260
           +   I+ V  L++     I+  +  G +AL  A              KLL  NG D+++ 
Sbjct: 115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK 174

Query: 261 NKSRETALDTAEKTGHSEIGVILKEH 286
           + S  TA+D A + G++EI  IL ++
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  130 bits (330), Expect = 2e-35
 Identities = 44/205 (21%), Positives = 80/205 (39%), Gaps = 23/205 (11%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
                  L  A +     +   +          +   +  G    +IA     +E+ K L
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD-TT---YQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           ++  A   L    +S + +    A +QG  E++ ++L+  +         G  AL  AA 
Sbjct: 59  IDRGADINLQ---NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

Query: 175 NGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQS-----IELVDELVKVEPVIIN 227
            GH++ VK LL    G    +  +  G TAL  AV  +       ++V  L++      +
Sbjct: 116 KGHIDNVKLLLED--GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQS 172

Query: 228 MVDAKGNSALHIATRKGRVQ--KLL 250
           + D  G +A+  A +KG  +  K+L
Sbjct: 173 IKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  101 bits (254), Expect = 7e-25
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 17/169 (10%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL   V    +E+   +I    D+ L+      N   ++    A   G  +++  M++ 
Sbjct: 41  TPLNIAVHNNDIEIAKALIDRGADINLQ------NSISDSPYLYAGAQGRTEILAYMLK- 93

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA-----S 139
           H T       R G +A   AA++G ++ +K+L+E   E +   +    TAL  A      
Sbjct: 94  HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG 153

Query: 140 SQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLS 186
           +Q + ++VK L+E G   A      ++G+TA+  A + G+ EI K L  
Sbjct: 154 NQLYQDIVKLLMENG---ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 94.8 bits (237), Expect = 1e-22
 Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 43/165 (26%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALL 185
                  L  A+ +   +V + L +       +    + G T L+ A  N  +EI KAL+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTT---YQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
            +                     G      D         IN+ ++  +S    A  +GR
Sbjct: 60  DR---------------------G-----AD---------INLQNSISDSPYLYAGAQGR 84

Query: 246 ---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
              +  +L     D    N+    AL  A + GH +   +L E G
Sbjct: 85  TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  140 bits (356), Expect = 9e-39
 Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 11/198 (5%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
                   A + G  E  + L+E           D  N T LH A+    +++VK+ + K
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYDVR---QPDKENVTLLHWAAINNRIDLVKYYISK 64

Query: 154 GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE 213
           G+ +  +      T LH A R GHL +V  L+       L  D +G + +H+A +     
Sbjct: 65  GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTS 123

Query: 214 LVDELVKVEPVIINMVDAKGNSALHIATRKG---RVQKLLNINGVDK-AVINKSRETALD 269
           +V  L+      ++M+D  G + L  A  +       +LL    V         + TAL 
Sbjct: 124 IVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH 182

Query: 270 TAEKTGHSEIGVILKEHG 287
            A   G++ +  +L E G
Sbjct: 183 WAVLAGNTTVISLLLEAG 200

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  125 bits (316), Expect = 4e-33
 Identities = 42/205 (20%), Positives = 88/205 (42%), Gaps = 22/205 (10%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           T L        ++LV   IS    ++             T L+ A   G++ MV ++++Y
Sbjct: 44  TLLHWAAINNRIDLVKYYISKGAIVD-----QLGGDLNSTPLHWATRQGHLSMVVQLMKY 98

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A     +  G    H+AA+ G   ++  L+      +++   D +  T L  A+ 
Sbjct: 99  G----ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM---DQNGMTPLMWAAY 151

Query: 141 QGH-VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DK 197
           + H V+  + LL    ++    + +  TALH A   G+  ++  LL     +   +  + 
Sbjct: 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV---DAQNI 208

Query: 198 KGQTALHMAVKGQSIELVDELVKVE 222
           KG++AL +A + +++ +++ L +  
Sbjct: 209 KGESALDLAKQRKNVWMINHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  122 bits (309), Expect = 4e-32
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALL 185
           D  +T  +  A+  G  E  + L+E G     +        T LH AA N  +++VK  +
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAG---YDVRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
           SK   +         T LH A +   + +V +L+K      +++D +G S +H+A + G 
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGH 121

Query: 246 VQ--KLLNINGVDKAVINKSRETALDTAEKTGHS-EIGVILKEHG 287
                 L   G D  +++++  T L  A    HS +   +L    
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 226 INMVDAKGNSALHIATRKG---RVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 282
           +  +D      +  AT+ G   R ++L+   G D    +K   T L  A      ++   
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 283 LKEHG 287
               G
Sbjct: 61  YISKG 65

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  140 bits (355), Expect = 1e-38
 Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 16/217 (7%)

Query: 80  EMIRY---HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTA 134
            +I        SL     R G  A H+AA+    +  K L+E  A        D+   T 
Sbjct: 5   AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN---IQDNMGRTP 61

Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR 194
           LH A S     V + L+   +T       +G T L  AAR     +++ L++    +   
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--- 118

Query: 195 N--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLL 250
           N  D  G++ALH A    +++    L+K      +M + +  + L +A R+G  +  K+L
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVL 177

Query: 251 NINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
             +  ++ + +       D A++  H +I  +L E+ 
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  135 bits (342), Expect = 7e-37
 Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 36/219 (16%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLK 114
           +++GETAL++AA Y   D  + ++       A     I+   G    H A       V +
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLL------EASADANIQDNMGRTPLHAAVSADAQGVFQ 75

Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSA 172
           IL+      L       TT L  A+      +++ L+      A +      GK+ALH A
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH---ADVNAVDDLGKSALHWA 132

Query: 173 ARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVI----- 225
           A   +++    LL         +  + + +T L +A +  S E    L      +     
Sbjct: 133 AAVNNVDAAVVLLKNGANK---DMQNNREETPLFLAAREGSYETAKVL------LDHFAN 183

Query: 226 INMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVINK 262
            ++ D        IA  +    + +LL+       V + 
Sbjct: 184 RDITDHMDRLPRDIAQERMHHDIVRLLDEYN---LVRSP 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  126 bits (320), Expect = 8e-34
 Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 8/184 (4%)

Query: 108 GCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNG 165
               V+   +     L    D +  TALH A+     +  K LLE     A      + G
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS---ADANIQDNMG 58

Query: 166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI 225
           +T LH+A       + + L+      +      G T L +A +     ++++L+      
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH-AD 117

Query: 226 INMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 283
           +N VD  G SALH A     V    +L  NG +K + N   ET L  A + G  E   +L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

Query: 284 KEHG 287
            +H 
Sbjct: 178 LDHF 181

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (318), Expect = 2e-33
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
           +  G T L+ A       + + +IR +  +    +  +G     +AA+     +L+ L+ 
Sbjct: 55  DNMGRTPLHAAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113

Query: 119 --ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAAR 174
             A        D    +ALH A++  +V+    LL+ G   A    ++N  +T L  AAR
Sbjct: 114 SHADVN---AVDDLGKSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNREETPLFLAAR 167

Query: 175 NGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK 232
            G  E  K LL         +  D   +    +A +    ++V  L +         +  
Sbjct: 168 EGSYETAKVLLDHFANR---DITDHMDRLPRDIAQERMHHDIVRLLDE--------YNLV 216

Query: 233 GNSALH 238
            +  LH
Sbjct: 217 RSPQLH 222

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  134 bits (340), Expect = 5e-37
 Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 20/201 (9%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
              +NG     I  ++   + L  L           DS N T L  A   G    +  L+
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLV 55

Query: 152 EKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAV 207
           E       +  +   G TAL  A +N  L I + LLSK   +   N  D  G+T L  ++
Sbjct: 56  ENF---DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV---NTKDFSGKTPLMWSI 109

Query: 208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVINKSRE 265
                E+   L++     +N  + +G + L +A++ GR  + K L   G D +  + +  
Sbjct: 110 IFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL 168

Query: 266 TALDTAEKTGHSEIGVILKEH 286
           TA  +A   G  E+  I  E 
Sbjct: 169 TAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  129 bits (326), Expect = 5e-35
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 26/201 (12%)

Query: 58  MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
           M+++GE    +  E      +  +           +         +A   G    +  L+
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLR--------NYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 118 E--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAA 173
           E     E     D   +TAL  A     + + + LL KG   + +  +   GKT L  + 
Sbjct: 56  ENFDKLE---DKDIEGSTALIWAVKNNRLGIAEKLLSKG---SNVNTKDFSGKTPLMWSI 109

Query: 174 RNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
             G+ E+   LL     +   N  + +G+T L +A K    E+V +L+++    I+  D 
Sbjct: 110 IFGYSEMSYFLLEHGANV---NDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDL 165

Query: 232 KGNSALHIATRKGR--VQKLL 250
            G +A   A   GR  V K+ 
Sbjct: 166 TGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  118 bits (299), Expect = 3e-31
 Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 22/194 (11%)

Query: 37  ELVLDMISSYGDMELREMLS-KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR 95
           E+V  +       +  + L    +    T L VA   G  + + +++  +      ++ +
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVE-NF---DKLEDK 64

Query: 96  N--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLL 151
           +  G  A   A K   L + + L+   +      T D S  T L  +   G+ E+  FLL
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVN---TKDFSGKTPLMWSIIFGYSEMSYFLL 121

Query: 152 EKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAV 207
           E G   A +  R+  G+T L  A++ G  EIVK LL     I   +  D  G TA   A 
Sbjct: 122 EHG---ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI---SARDLTGLTAEASAR 175

Query: 208 KGQSIELVDELVKV 221
                E++    +V
Sbjct: 176 IFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 78.2 bits (194), Expect = 6e-17
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 10/126 (7%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           NG+            + +  L +         D   +T L +A        +D+LV+   
Sbjct: 7   NGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVENF- 58

Query: 224 VIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGV 281
             +   D +G++AL  A +  R+   + L   G +    + S +T L  +   G+SE+  
Sbjct: 59  DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118

Query: 282 ILKEHG 287
            L EHG
Sbjct: 119 FLLEHG 124

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  136 bits (344), Expect = 5e-37
 Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 14/191 (7%)

Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
            G  +     +    +     +     +   F+      L  +S +G  ++V+ ++ +  
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEV- 60

Query: 156 TLATIARSN--GKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSI 212
                +  N  G TALH+A   GH EIVK L+    G+ V   D  G T LH A    ++
Sbjct: 61  --DDPSLPNDEGITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCNNV 116

Query: 213 ELVDELVKVEPVI--INMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETAL 268
           ++   LV+    +  +   D +  +       +G  Q  + L        ++NK    AL
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

Query: 269 DTAEKTGHSEI 279
              E     E+
Sbjct: 177 WDYEPQNDDEL 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  133 bits (338), Expect = 3e-36
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 21/225 (9%)

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA-RNGYDAFHIAAKQGCLEVLKILME- 118
           +G+ +L             E I +       +K           ++ +G  ++++ ++  
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHG----MRVKFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 119 -ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARN 175
              P L    +    TALH A   GH E+VKFL++ G     +  A S+G T LH AA  
Sbjct: 60  VDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFG---VNVNAADSDGWTPLHCAASC 113

Query: 176 GHLEIVKALLSKEPGI--VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG 233
            ++++ K L+     +  +  +D +        ++    +    L  V+   + +++   
Sbjct: 114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ-EKMGIMNKGV 172

Query: 234 NSALHIATRKGRVQKLLNINGVDKAVINK--SRETALDTAEKTGH 276
             AL     +   +  +   G    +I++    E     A     
Sbjct: 173 IYALWDYEPQNDDELPMK-EGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  120 bits (302), Expect = 3e-31
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 15/168 (8%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSNGKTALHSAARNGHLEIVKALLS 186
           + +   +L         +     +  G     +         L  ++  G  ++V+ ++ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG---MRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 187 KEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG 244
           +       +  + +G TALH AV     E+V  LV+   V +N  D+ G + LH A    
Sbjct: 59  EVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCN 114

Query: 245 RVQ--KLLNINGVDKAVINKS---RETALDTAEKTGHSEIGVILKEHG 287
            VQ  K L  +G     +  S            + G+++    L    
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  116 bits (293), Expect = 7e-30
 Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 37/234 (15%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             L    RT   +   + I+    +       K N      L  ++  G  D+V+ +I  
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRV-------KFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL------MEALPELLMTFDSSNTTALH 136
                      N  G  A H A   G  E++K L      + A        DS   T LH
Sbjct: 60  V----DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA-------DSDGWTPLH 108

Query: 137 TASSQGHVEVVKFLLEKGSTLATIARSN-----GKTALHSAARNGHLEIVKALLSKEPGI 191
            A+S  +V+V KFL+E G   A +                    G+ +  + L   +  +
Sbjct: 109 CAASCNNVQVCKFLVESG---AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165

Query: 192 VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
            +  +K    AL         EL   + + + + I   + +       A    +
Sbjct: 166 GIM-NKGVIYALWDYEPQNDDEL--PMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  133 bits (338), Expect = 6e-37
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 13/173 (7%)

Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
           + H  A QG L+ LK  +     L+   D    T L  AS+ G +E V+FLLE G   A 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG---AD 61

Query: 160 I--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELV 215
                   ++AL  A+  G+ +IV  LL ++  I   N  D  G T L  AV+G  ++ V
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDI---NIYDWNGGTPLLYAVRGNHVKCV 118

Query: 216 DELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVINKSRET 266
           + L+      +      G + + +A   G   VQ+++  + +     N     
Sbjct: 119 EALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  132 bits (336), Expect = 1e-36
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 10/162 (6%)

Query: 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           ++ ++H  ++QG ++ +K  L KG  L       G T L  A+  G +E V+ LL     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--- 245
               +   K+ ++AL +A  G   ++V  L++ + V IN+ D  G + L  A R      
Sbjct: 62  P---HILAKERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKC 117

Query: 246 VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           V+ LL   G D      S  T +D A   G+ ++  +++ H 
Sbjct: 118 VEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  119 bits (300), Expect = 1e-31
 Identities = 35/185 (18%), Positives = 78/185 (42%), Gaps = 22/185 (11%)

Query: 23  DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
           D   +  L   G ++ + + +    ++      +K ++ G T L  A+ +G ++ VR ++
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLV-----NKPDERGFTPLIWASAFGEIETVRFLL 56

Query: 83  RYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALH 136
                   G    I A+    A  +A+  G  +++ +L+E          +D +  T L 
Sbjct: 57  E------WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN---IYDWNGGTPLL 107

Query: 137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND 196
            A    HV+ V+ LL +G+ L T    +G T +  A   G+ ++ + + +     + +++
Sbjct: 108 YAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSN 165

Query: 197 KKGQT 201
                
Sbjct: 166 LVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 75.1 bits (186), Expect = 4e-16
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 32/124 (25%)

Query: 165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPV 224
              ++H  A  G L+ +K  L K   +V + D++G T L  A     IE V  L++    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---- 57

Query: 225 IINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
                                        G D  ++ K RE+AL  A   G+++I  +L 
Sbjct: 58  ----------------------------WGADPHILAKERESALSLASTGGYTDIVGLLL 89

Query: 285 EHGV 288
           E  V
Sbjct: 90  ERDV 93

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  133 bits (338), Expect = 3e-36
 Identities = 46/247 (18%), Positives = 81/247 (32%), Gaps = 39/247 (15%)

Query: 56  SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKI 115
           S+    G     +  + G+               A + +      +  AA++   + L  
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIA----ADVVS-EYETPWWTAARKADEQALSQ 63

Query: 116 LME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           L+E    +     D +  TAL   +  G  + V+ L E G+ L       G TALH AA 
Sbjct: 64  LLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120

Query: 175 NGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVK------------ 220
               E+V+AL+     I      D++G TAL +A +          ++            
Sbjct: 121 YVRPEVVEALVELGADI---EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN 177

Query: 221 ---------VEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVINKSRETALD 269
                     E   I     KG    ++   K     + +  ++  +   + K  E  L+
Sbjct: 178 VLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE--DVAKDYEDGLE 235

Query: 270 TAEKTGH 276
            A     
Sbjct: 236 YAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  125 bits (317), Expect = 3e-33
 Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 37/230 (16%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP 121
           GE    + +               + ++           + I  K G             
Sbjct: 1   GEVNKIIGSRTA-----------GEGAME----------YLIEWKDGHSPSWVPSSYIAA 39

Query: 122 ELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-AR-SNGKTALHSAARNGHLE 179
           ++     S   T   TA+ +   + +  LLE       + A   NG+TAL   A  G  +
Sbjct: 40  DV----VSEYETPWWTAARKADEQALSQLLED----RDVDAVDENGRTALLFVAGLGSDK 91

Query: 180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHI 239
            V+ L      +  R+ + G TALHMA      E+V+ LV++    I + D +G +AL +
Sbjct: 92  CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALEL 150

Query: 240 ATRKGR--VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           A    +   +      G     I   +   +   +   ++E+  I+++ G
Sbjct: 151 AREILKTTPKGNPMQFGRR---IGLEKVINVLEGQVFEYAEVDEIVEKRG 197

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  124 bits (313), Expect = 1e-32
 Identities = 41/247 (16%), Positives = 68/247 (27%), Gaps = 45/247 (18%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
                  + G     +       D+             ET  + AA       + +++  
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIAADV---------VSEYETPWWTAARKADEQALSQLL-- 65

Query: 85  HDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
            D     + A   NG  A    A  G  + +++L EA  +L         TALH A+   
Sbjct: 66  ED---RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122

Query: 143 HVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSK------------- 187
             EVV+ L+E G   A I      G TAL  A            +               
Sbjct: 123 RPEVVEALVELG---ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVL 179

Query: 188 --------EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHI 239
                   E   ++    KG+   ++       +           +   V       L  
Sbjct: 180 EGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH---VAEDVAKDYEDGLEY 236

Query: 240 ATRKGRV 246
           A  +  +
Sbjct: 237 AVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 91.5 bits (228), Expect = 5e-21
 Identities = 36/214 (16%), Positives = 60/214 (28%), Gaps = 43/214 (20%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
              +TP  +  R    + +  ++    D++        +++G TAL   A  G    VR 
Sbjct: 43  SEYETPWWTAARKADEQALSQLLED-RDVDAV------DENGRTALLFVAGLGSDKCVRL 95

Query: 81  MIRYHDTSLAGIKARNGYD---AFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTAL 135
           +        A +  R+      A H+AA     EV++ L+E  A  E+    D    TAL
Sbjct: 96  LAEAG----ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---DERGLTAL 148

Query: 136 HTASSQGHVEVVKFLL-------EKGSTLATIA--------------RSNGKTALHSAAR 174
             A            +        +                      R  GK   +    
Sbjct: 149 ELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRW 208

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208
               +                 K  +  L  AV 
Sbjct: 209 KDGGDCEWVKGVHVAED---VAKDYEDGLEYAVA 239

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  131 bits (332), Expect = 3e-36
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 18/175 (10%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
               + H  A QG +  L   +E   +       D    T L  A++ G + VV+FLL+ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
           G   A         ++AL  A   G+ +IVK LL     +   N  D  G T L  AV G
Sbjct: 59  G---ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV---NEYDWNGGTPLLYAVHG 112

Query: 210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVINK 262
             ++ V  L++       +    G +++ +A   G   VQ+++  + +      K
Sbjct: 113 NHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  130 bits (331), Expect = 4e-36
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSK 187
           +N+ ++H  ++QG +  +   +E+      I      G T L  AA +G + +V+ LL  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQE---NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 188 EPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
                      K  ++AL +A      ++V  L+    V +N  D  G + L  A     
Sbjct: 59  GADP---QLLGKGRESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNH 114

Query: 246 ---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
              V+ LL  +G D  +   S   ++D A   G+  +  +++ H 
Sbjct: 115 VKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  127 bits (321), Expect = 1e-34
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 17/166 (10%)

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME 118
           +   +++  A  G +  +   I         I   +  G+     AA  G + V++ L++
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQE----NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

Query: 119 --ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAAR 174
             A P+LL        +AL  A S+G+ ++VK LL+ G     +     NG T L  A  
Sbjct: 58  NGADPQLL---GKGRESALSLACSKGYTDIVKMLLDCG---VDVNEYDWNGGTPLLYAVH 111

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
             H++ VK LL       +     G  ++ +AV      +   +  
Sbjct: 112 GNHVKCVKMLLESGADPTIE-TDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  113 bits (286), Expect = 9e-30
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 22/169 (13%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             +  L   G +  +   I     +         ++ G T L  AA +G + +V  +++ 
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHT------DEEGFTPLMWAAAHGQIAVVEFLLQ- 57

Query: 85  HDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTA 138
                 G    +  +    A  +A  +G  +++K+L++          +D +  T L  A
Sbjct: 58  -----NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN---EYDWNGGTPLLYA 109

Query: 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
               HV+ VK LLE G+   TI   +G  ++  A   G+  + + + S 
Sbjct: 110 VHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  129 bits (326), Expect = 3e-35
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 10/160 (6%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             + T   +G+   V+  L+           +G + LH A R G   +V+ L+ +   I 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI- 65

Query: 193 LRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQ 247
             N  ++   T LH+A      ++V +L++ +   IN V+  GN  LH A   G+    +
Sbjct: 66  --NVMNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAE 122

Query: 248 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
            L+  NG   ++ NK  E  +D A+      +    ++ G
Sbjct: 123 DLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  128 bits (324), Expect = 6e-35
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 19/188 (10%)

Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS 155
              D      ++G    +++ ++     L   D    + LH A  +G   VV+ L+ +G 
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG- 62

Query: 156 TLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQS 211
             A I        T LH AA +GH +IV+ LL  +  I   N  ++ G   LH A     
Sbjct: 63  --ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI---NAVNEHGNVPLHYACFWGQ 117

Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVINKSRETALD 269
            ++ ++LV     ++++ +  G   +  A    R  +++     G +   +N        
Sbjct: 118 DQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN---LN---RIPYK 170

Query: 270 TAEKTGHS 277
                G +
Sbjct: 171 DTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  125 bits (317), Expect = 7e-34
 Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 21/191 (10%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--A 119
               ++     G    VR  +   +  L      +G+   H A ++G   V+++L+   A
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGH 177
                   +  + T LH A+S GH ++V+ LL+     A I     +G   LH A   G 
Sbjct: 64  RIN---VMNRGDDTPLHLAASHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQ 117

Query: 178 LEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA 236
            ++ + L++   G  V   +K G+  +  A       L +   K+    +N +       
Sbjct: 118 DQVAEDLVAN--GALVSICNKYGEMPVDKAKAPLRELLRERAEKMG-QNLNRIP------ 168

Query: 237 LHIATRKGRVQ 247
                 KG  +
Sbjct: 169 YKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  100 bits (251), Expect = 9e-25
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 27/172 (15%)

Query: 25  TPLQSLVRTGSVELVLDMISSYG-DMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
             + +  R G+   V   + +   D+         +  G + L+ A   G   +V  +I 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQG------DDHGFSPLHWACREGRSAVVEMLIM 60

Query: 84  YHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHT 137
                  G    +  R      H+AA  G  ++++ L++  A        +      LH 
Sbjct: 61  R------GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN---AVNEHGNVPLHY 111

Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSN--GKTALHSAARNGHLEIVKALLSK 187
           A   G  +V + L+  G   A ++  N  G+  +  A       + +     
Sbjct: 112 ACFWGQDQVAEDLVANG---ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 67.1 bits (165), Expect = 4e-13
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNIN 253
             +    +    +  +   V   +      +N  D  G S LH A R+GR    ++L + 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 254 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           G    V+N+  +T L  A   GH +I   L ++ 
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.0 bits (131), Expect = 9e-09
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 27/129 (20%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           + DDTPL      G  ++V  ++    D+        +N+ G   L+ A  +G   +  +
Sbjct: 70  RGDDTPLHLAASHGHRDIVQKLLQYKADIN------AVNEHGNVPLHYACFWGQDQVAED 123

Query: 81  MIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTA 134
           ++        G    I  + G      A       + +   +            + N   
Sbjct: 124 LVAN------GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ---------NLNRIP 168

Query: 135 LHTASSQGH 143
                 +G 
Sbjct: 169 YKDTFWKGT 177

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  126 bits (320), Expect = 7e-34
 Identities = 47/220 (21%), Positives = 71/220 (32%), Gaps = 27/220 (12%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           N       AA  G LEV++  ++    P      +    TALH A    +  +V FL+  
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLITA 76

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           G   A +    S+G T LH AA      I  AL+     I       G TA       + 
Sbjct: 77  G---ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133

Query: 212 --IELVDELVKVEPVIINMVDAKGNSALHIATRKG-RVQKLLNINGVDKAVINKSRETAL 268
              +    L  VE   + ++++    AL   + +            V     +   ET  
Sbjct: 134 GYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDW 192

Query: 269 DTAEKTGHSEIGVILKEHGVP-----CGKSIKPQANSARE 303
             A   G            VP         +KPQ +  + 
Sbjct: 193 WWAALHGQEGY--------VPRNYFGLFPRVKPQRSKVKH 224

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.9 bits (247), Expect = 1e-23
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 20/184 (10%)

Query: 44  SSYGDMELREML-------SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KA 94
           +  G++E+ +         S+ N+ G TAL+ A       +V  +I       A +    
Sbjct: 29  ALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG----ANVNSPD 84

Query: 95  RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS--QGHVEVVKFLLE 152
            +G+   H AA      +   L++    +  T  S   TA        +G+ +   +L +
Sbjct: 85  SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144

Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQS 211
              ++  +  S    AL   +     E+      +   + VLR D   +T    A     
Sbjct: 145 VEQSM-GLMNSGAVYALWDYSAEFGDEL---SFREGESVTVLRRDGPEETDWWWAALHGQ 200

Query: 212 IELV 215
              V
Sbjct: 201 EGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 29/182 (15%), Positives = 49/182 (26%), Gaps = 46/182 (25%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           T L + +   +  +V  +I++  ++         +  G T L+ AA      +   ++++
Sbjct: 56  TALHNAICGANYSIVDFLITAGANVN------SPDSHGWTPLHCAASCNDTVICMALVQH 109

Query: 85  HDTSLAGIKARNGYD---AFHIAA--KQGCLEVLKILM---------------------- 117
                A I A    D   AF      ++G  +    L                       
Sbjct: 110 G----AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA 165

Query: 118 EALPELLMTF---------DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA 168
           E   EL             D    T    A+  G    V              RS  K  
Sbjct: 166 EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHH 225

Query: 169 LH 170
            H
Sbjct: 226 HH 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  127 bits (321), Expect = 9e-34
 Identities = 45/261 (17%), Positives = 75/261 (28%), Gaps = 53/261 (20%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGI------KARNGYDAFHIAA---KQGCLEV 112
               L+     G  + +  ++ Y   +   +      +   G      A    + G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 113 LKILMEALPELLMTFDSSNT----------TALHTASSQGHVEVVKFLLEKG-------- 154
           +  L++   +        N           +ALH A  +  ++ VK L+E G        
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 155 ----STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVK 208
                         G+  L  AA     ++V  LL            D  G T LH  V 
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV- 180

Query: 209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG--RVQKLLNINGVDKAVINKSRET 266
                            +   ++  NSAL I    G  ++   L      + + N    T
Sbjct: 181 -----------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223

Query: 267 ALDTAEKTGHSEIGVILKEHG 287
            L  A K G  EI   + +  
Sbjct: 224 PLKLAAKEGKIEIFRHILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  119 bits (301), Expect = 5e-31
 Identities = 51/261 (19%), Positives = 89/261 (34%), Gaps = 55/261 (21%)

Query: 23  DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQ---SGETALYVAA---EYGYVD 76
           D   L S+V  G  E +  ++  Y     + +         +G+T L  A    + G   
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLE-YLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 77  MVREMIRYHDTSLAG---------IKARNGYDAFHIAAKQGCLEVLKILMEA-------- 119
            +  +++    S             +   G+ A HIA ++  L+ +K+L+E         
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 120 ----LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALH--- 170
                 +   T        L  A+     +VV +LLE     A++    S G T LH   
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 171 -------------SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE 217
                            +G L++   L        + N  +G T L +A K   IE+   
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN-HQGLTPLKLAAKEGKIEIFRH 239

Query: 218 LVKVEPVIINMVDAKGNSALH 238
           +++ E          G +A H
Sbjct: 240 ILQRE--------FSGAAAHH 252

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  124 bits (313), Expect = 1e-33
 Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 19/169 (11%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD--AFHIAAKQGCLEVLKIL 116
           N   +  L  AA+ G V+ V+++           +   G      H AA    + V++ L
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQS---VNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSA 172
           ++  A        D      LH A S GH EV + L++ G   A +        T LH A
Sbjct: 62  LQHGADVH---AKDKGGLVPLHNACSYGHYEVAELLVKHG---AVVNVADLWKFTPLHEA 115

Query: 173 ARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVK 220
           A  G  EI K LL    G    + ++ G T L +   G   ++ D L  
Sbjct: 116 AAKGKYEICKLLLQH--GADPTKKNRDGNTPLDLVKDG-DTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  120 bits (304), Expect = 3e-32
 Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           +S     L  A+  G VE VK L    S           T LH AA    + +V+ LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 188 EPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR- 245
             G  V   DK G   LH A      E+ + LVK    ++N+ D    + LH A  KG+ 
Sbjct: 65  --GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKY 121

Query: 246 -VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
            + KLL  +G D    N+   T LD  +  G ++I  +L+   
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.9 bits (118), Expect = 5e-07
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 228 MVDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
           M +++ +  L  A + G    V+KL  +  V+   I   + T L  A       +   L 
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 285 EHG 287
           +HG
Sbjct: 63  QHG 65

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  123 bits (311), Expect = 2e-33
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 12/157 (7%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIAR-SNGKTALHSAARNGHLEIVKALLSKEPGI 191
             L  A+  G  + V+ L+  G   A       G + LH AA+ GH    + LL      
Sbjct: 4   KKLLEAARAGQDDEVRILMANG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 192 VLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ-- 247
              +   K  +T LHMA       +V+ L+K     +N  D    +ALH AT     +  
Sbjct: 61  ---DARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 248 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
           +LL   G D    +K  +TA D +   G+ ++  IL+
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  118 bits (298), Expect = 1e-31
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 27/167 (16%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME------ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
           +       AA+ G  + ++ILM                D   T+ LH A+  GH    + 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT--------DWLGTSPLHLAAQYGHFSTTEV 52

Query: 150 LLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHM 205
           LL  G    +  AR+   +T LH AA  GH  IV+ LL     +   N  D    TALH 
Sbjct: 53  LLRAG---VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHW 106

Query: 206 AVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLL 250
           A +    E+V+ L+K     ++       +A  I+   G   + ++L
Sbjct: 107 ATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  116 bits (293), Expect = 7e-31
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 30/169 (17%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGI-KARNGYDAFHIAAKQGCLEVLKILM--- 117
               L  AA  G  D VR ++  +    A       G    H+AA+ G     ++L+   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMA-NG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 118 ----EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHS 171
                            + T LH A+S+GH  +V+ LL+ G   A + A+     TALH 
Sbjct: 58  VSRDAR--------TKVDRTPLHMAASEGHANIVEVLLKHG---ADVNAKDMLKMTALHW 106

Query: 172 AARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDEL 218
           A  + H E+V+ L+     +   +   K  +TA  +++   + +L + L
Sbjct: 107 ATEHNHQEVVELLIKYGADV---HTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 97.5 bits (244), Expect = 4e-24
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 16/132 (12%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
           +  G + L++AA+YG+      ++R          AR        H+AA +G   ++++L
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAG----VSRDARTKVDRTPLHMAASEGHANIVEVL 86

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSA 172
           ++  A        D    TALH A+   H EVV+ L++ G   A +  +S   KTA   +
Sbjct: 87  LKHGADVNAK---DMLKMTALHWATEHNHQEVVELLIKYG---ADVHTQSKFCKTAFDIS 140

Query: 173 ARNGHLEIVKAL 184
             NG+ ++ + L
Sbjct: 141 IDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.3 bits (171), Expect = 3e-14
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 34/124 (27%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           +    L  AAR G  + V+ L++   G     D  G + LH+A +       + L++   
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR--- 55

Query: 224 VIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 283
                                         GV +    K   T L  A   GH+ I  +L
Sbjct: 56  -----------------------------AGVSRDARTKVDRTPLHMAASEGHANIVEVL 86

Query: 284 KEHG 287
            +HG
Sbjct: 87  LKHG 90

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           K D TPL      G   +V  ++    D+         +    TAL+ A E+ + ++V  
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVN------AKDMLKMTALHWATEHNHQEVVEL 118

Query: 81  MIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
           +I+Y     A +  ++     AF I+   G  ++ +IL
Sbjct: 119 LIKYG----ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  123 bits (312), Expect = 3e-33
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 13/160 (8%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPG 190
             L  A+  G  + V+ L+  G   A +    ++G T LH AA NGHLEIV+ LL     
Sbjct: 16  KKLLEAARAGRDDEVRILMANG---ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ- 247
           +   N  D  G T L +A     +E+V+ L+K     +N  D +G++ LH+A   G ++ 
Sbjct: 73  V---NAVDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEI 128

Query: 248 -KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 286
            ++L  NG D    +K  +TA D +   G+ ++  IL++ 
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  121 bits (307), Expect = 1e-32
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 21/168 (12%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKILME- 118
               L  AA  G  D VR ++       A +  +  +G+   H+AA  G LE++++L++ 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANG----ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 119 -ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARN 175
            A        D +  T L  A+  GH+E+V+ LL+ G   A + A    G T LH AA  
Sbjct: 70  GADVN---AVDHAGMTPLRLAALFGHLEIVEVLLKNG---ADVNANDMEGHTPLHLAAMF 123

Query: 176 GHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           GHLEIV+ LL     +   N  DK G+TA  +++   + +L + L K+
Sbjct: 124 GHLEIVEVLLKNGADV---NAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  120 bits (304), Expect = 3e-32
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           +       AA+ G  + ++ILM   A        D+S  T LH A+  GH+E+V+ LL+ 
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVN---AEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
           G   A +      G T L  AA  GHLEIV+ LL     +   N  D +G T LH+A   
Sbjct: 70  G---ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV---NANDMEGHTPLHLAAMF 123

Query: 210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLL 250
             +E+V+ L+K     +N  D  G +A  I+   G   + ++L
Sbjct: 124 GHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  106 bits (268), Expect = 3e-27
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 22/169 (13%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             L    R G  + V  ++++  D+         + SG T L++AA  G++++V  +++ 
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNAE------DASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A + A +  G     +AA  G LE++++L++  A        D    T LH A+ 
Sbjct: 70  G----ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN---ANDMEGHTPLHLAAM 122

Query: 141 QGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSK 187
            GH+E+V+ LL+ G   A + A+   GKTA   +  NG+ ++ + L   
Sbjct: 123 FGHLEIVEVLLKNG---ADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 94.0 bits (235), Expect = 1e-22
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQ 210
           +GS       S+    L  AAR G  + V+ L++    +   N  D  G T LH+A    
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNG 58

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETAL 268
            +E+V+ L+K     +N VD  G + L +A   G ++  ++L  NG D    +    T L
Sbjct: 59  HLEIVEVLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117

Query: 269 DTAEKTGHSEIGVILKEHG 287
             A   GH EI  +L ++G
Sbjct: 118 HLAAMFGHLEIVEVLLKNG 136

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  121 bits (306), Expect = 1e-32
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 17/169 (10%)

Query: 58  MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKI 115
           M +     L  AA  G ++ +  +++ ++     + A+N  G  A  +    G  E+ + 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQ-NN---VNVNAQNGFGRTALQVMK-LGNPEIARR 55

Query: 116 LME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHS 171
           L+   A P+     D +    +H A+  G ++ ++ LLE     A +    N G   LH 
Sbjct: 56  LLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQ---ADVNIEDNEGNLPLHL 109

Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           AA+ GHL +V+ L+      V   + KG TA  +A      E+V  +  
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  120 bits (304), Expect = 3e-32
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
              +    AA +G LE L  L++           +    TAL      G+ E+ + LL +
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVN---AQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 154 GSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
           G   A    +   G   +H AAR G L+ ++ LL  +  +   N  D +G   LH+A K 
Sbjct: 60  G---ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV---NIEDNEGNLPLHLAAKE 113

Query: 210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--VQKLL 250
             + +V+ LVK     +   + KG++A  +A   GR  V  L+
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  117 bits (297), Expect = 3e-31
 Identities = 39/162 (24%), Positives = 80/162 (49%), Gaps = 15/162 (9%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPG 190
             L +A+++G +E +  LL+       + A++  G+TAL    + G+ EI + LL +   
Sbjct: 7   NELASAAARGDLEQLTSLLQNN---VNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGAN 62

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--- 245
               +  D+ G   +H A +   ++ +  L++ +   +N+ D +GN  LH+A ++G    
Sbjct: 63  P---DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 246 VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           V+ L+     +    N   +TA D A   G +E+  +++ +G
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  101 bits (254), Expect = 2e-25
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 22/169 (13%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             L S    G +E +  ++ +  ++         N  G TAL V    G  ++ R ++  
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVN------AQNGFGRTALQVMK-LGNPEIARRLL-- 57

Query: 85  HDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTA 138
               L G    +K R G+   H AA+ G L+ L+ L+E  A   +    D+     LH A
Sbjct: 58  ----LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE---DNEGNLPLHLA 110

Query: 139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           + +GH+ VV+FL++  ++        G TA   A   G  E+V  + + 
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.6 bits (169), Expect = 6e-14
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
           +++G   ++ AA  G++D ++ ++ +     A +   +  G    H+AAK+G L V++ L
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQ----ADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 117 MEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
           ++     +   +    TA   A   G  EVV  +   G
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  119 bits (300), Expect = 2e-31
 Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 20/178 (11%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
            A  G   + I  K G             ++     S   T   TA+ +   + +  LLE
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE 65

Query: 153 KGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210
                  +     NG+TAL   A  G  + V+ L      +  R+ + G TALHMA    
Sbjct: 66  D----RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQKLL----NINGVDKAVIN 261
             E+V+ LV++    I + D +G +AL +A    +       +     I    + VIN
Sbjct: 122 RPEVVEALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG--LEKVIN 176

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  116 bits (294), Expect = 1e-30
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 10/166 (6%)

Query: 56  SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKI 115
           S+    G     +  + G+               A + +      +  AA++   + L  
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIA----ADVVS-EYETPWWTAARKADEQALSQ 62

Query: 116 LME-ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           L+E    + +   D +  TAL   +  G  + V+ L E G+ L       G TALH AA 
Sbjct: 63  LLEDRDVDAV---DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
               E+V+AL+     I +  D++G TAL +A +          ++
Sbjct: 120 YVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (262), Expect = 2e-26
 Identities = 35/167 (20%), Positives = 53/167 (31%), Gaps = 21/167 (12%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
                  + G     +       D+             ET  + AA       + +++  
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADV---------VSEYETPWWTAARKADEQALSQLL-- 64

Query: 85  HDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
            D     + A   NG  A    A  G  + +++L EA  +L         TALH A+   
Sbjct: 65  ED---RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 143 HVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSK 187
             EVV+ L+E G   A I      G TAL  A            +  
Sbjct: 122 RPEVVEALVELG---ADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 84.9 bits (211), Expect = 2e-19
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 17/143 (11%)

Query: 152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           E    + +     G        ++GH             +      + +T    A +   
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKAD 56

Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQKLL----NINGVDKAVINKSR 264
            + + +L  +E   ++ VD  G +AL      G    V+ L     +++  D     +  
Sbjct: 57  EQALSQL--LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD----MRGG 110

Query: 265 ETALDTAEKTGHSEIGVILKEHG 287
            TAL  A      E+   L E G
Sbjct: 111 LTALHMAAGYVRPEVVEALVELG 133

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  116 bits (293), Expect = 7e-31
 Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 18/165 (10%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME- 118
               L  AA  G V  VR ++           A N  G  A  +    G   +   L++ 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHREL---VHPDALNRFGKTALQVMMF-GSTAIALELLKQ 57

Query: 119 -ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARN 175
            A P +    D+S T+ +H A+  G ++ +K L+E G   A +      G   +H A + 
Sbjct: 58  GASPNVQ---DTSGTSPVHDAARTGFLDTLKVLVEHG---ADVNVPDGTGALPIHLAVQE 111

Query: 176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           GH  +V  L ++    + R D +G T L +A++  + +LVD L  
Sbjct: 112 GHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  114 bits (288), Expect = 3e-30
 Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 10/158 (6%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             L  A+++G V+ V+ LL +           GKTAL      G   I   LL +     
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP- 61

Query: 193 LRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--K 248
             N  D  G + +H A +   ++ +  LV+     +N+ D  G   +H+A ++G      
Sbjct: 62  --NVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 249 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 286
            L     D    +    T L+ A + G  ++  IL+ H
Sbjct: 119 FL-AAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  112 bits (284), Expect = 1e-29
 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 97  GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST 156
             D    AA +G ++ ++ L+          +    TAL      G   +   LL++G  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQG-- 58

Query: 157 LATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSI 212
            A+     ++G + +H AAR G L+ +K L+     +   N  D  G   +H+AV+    
Sbjct: 59  -ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV---NVPDGTGALPIHLAVQEGHT 114

Query: 213 ELVDELVK-VEPVIINMVDAKGNSALHIATRKGR--VQKLL 250
            +V  L    +   ++  DA+G + L +A ++G   +  +L
Sbjct: 115 AVVSFLAAESD---LHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  103 bits (259), Expect = 4e-26
 Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 29/174 (16%)

Query: 22  RDDTPLQSLVRTGSVELVLDMISSYG-DMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           R    L      G V+ V  ++       +       +N+ G+TAL V   +G   +  E
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPD------ALNRFGKTALQVMM-FGSTAIALE 53

Query: 81  MIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTA 134
           +++       G    ++  +G    H AA+ G L+ LK+L+E  A        D +    
Sbjct: 54  LLKQ------GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALP 104

Query: 135 LHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLS 186
           +H A  +GH  VV FL  +    + +    + G T L  A + G  ++V  L  
Sbjct: 105 IHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.0 bits (131), Expect = 7e-09
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 198 KGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQKLLNING 254
           +    L  A     ++ V  L+  E V  + ++  G +AL +    G      +LL   G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK-QG 58

Query: 255 VDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
               V + S  + +  A +TG  +   +L EHG
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  119 bits (301), Expect = 9e-31
 Identities = 42/270 (15%), Positives = 83/270 (30%), Gaps = 60/270 (22%)

Query: 59  NQSGETALYVAAEYGYVDMVR---EMIRYHDTSLAGIKAR---NGYDAFHIA---AKQGC 109
                 +++ A        +      ++     L   + +    G      A      G 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 110 LEVLKILME------ALPELLMTFDSSNT----TALHTASSQGHVEVVKFLLEKG----- 154
            + + +L++      +L + +    + +     TALH A  + ++ +V  L+E G     
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 155 --------STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALH 204
                    T        G+  L  AA    L IVK LL         +  D  G T LH
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189

Query: 205 MAVKGQ---------SIELVDELVKV------EPVIINMVDAKGNSALHIATRKGR---V 246
             V+              + +E++ +         +  + + KG + L +A   G+   +
Sbjct: 190 ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL 249

Query: 247 QKLLNINGVDKAVINKSRETALDTAEKTGH 276
             +L    + +             A    H
Sbjct: 250 AYILQ-REIHE-------PECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  116 bits (293), Expect = 1e-29
 Identities = 42/254 (16%), Positives = 79/254 (31%), Gaps = 55/254 (21%)

Query: 90  AGIKARNGYD--AFHIAAKQGCLEVLKILMEALPELL-------MTFDSSNTTALHTAS- 139
           AG K    YD  +   A  Q   + L+ L+  L                +  T L  A  
Sbjct: 4   AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 140 --SQGHVEVVKFLLEKGSTLATIAR----------SNGKTALHSAARNGHLEIVKALLSK 187
               G  + +  LL+      ++ +            G+TALH A    ++ +V  L+  
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 188 -------------EPGIVLRNDKKGQTALHMAVKGQSIELVDELVK--VEPVIINMVDAK 232
                        +          G+  L +A     + +V  L++   +P  I+  D+ 
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183

Query: 233 GNSALHIATRKG------------------RVQKLLNINGVDKAVINKSRETALDTAEKT 274
           GN+ LH                         +   L+     + + N+   T L  A  +
Sbjct: 184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243

Query: 275 GHSEIGVILKEHGV 288
           G   +   + +  +
Sbjct: 244 GKIGVLAYILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  112 bits (281), Expect = 5e-28
 Identities = 39/253 (15%), Positives = 75/253 (29%), Gaps = 58/253 (22%)

Query: 20  AKRDD---TPLQSLV---RTGSVELVLDMISSYGDMELREMLSKMN-----QSGETALYV 68
            K  +   T L   +     G  + +  ++      +  +     +       G+TAL++
Sbjct: 48  FKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

Query: 69  AAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFD 128
           A E   + +V  ++       A ++A    D F     +                     
Sbjct: 108 AIERRNMTLVTLLVENG----ADVQAAANGDFFKKTKGRPG------------------F 145

Query: 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR--SNGKTALHSAARNGHLEIVK---- 182
                 L  A+    + +VKFLL+     A I+   S G T LH+        +      
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205

Query: 183 -----------ALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
                      A L     +    ++KG T L +A     I ++  +++         + 
Sbjct: 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ--------REI 257

Query: 232 KGNSALHIATRKG 244
                 H A    
Sbjct: 258 HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 31/136 (22%)

Query: 25  TPLQSLVRTGS---VELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG-------- 73
            PL     T     V+ +L       D+         +  G T L+   E          
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADIS------ARDSVGNTVLHALVEVADNTVDNTK 203

Query: 74  -YVDMVREMIRY-----HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTF 127
               M  E++           L  I  R G     +AA  G + VL  +++         
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-------- 255

Query: 128 DSSNTTALHTASSQGH 143
           +       H A+   H
Sbjct: 256 EIHEPECRHAAAHHHH 271

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  115 bits (290), Expect = 1e-29
 Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 14/199 (7%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           +     ++A      E+ + ++   +L       D  + TALH A S GH E+V+FLL+ 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLAT---RTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           G     +      G + LH AA  G  EIVKALL K   +    ++ G T LH A     
Sbjct: 63  G---VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNR 118

Query: 212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALD 269
            E+   L++      +  D    +A+H A  KG ++   +L        + +    T L 
Sbjct: 119 HEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177

Query: 270 TAEKTGHSEIGVILKEHGV 288
            A      E    L   G 
Sbjct: 178 LACDEERVEEAKFLVTQGA 196

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  107 bits (269), Expect = 7e-27
 Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 22/237 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLK 114
             S      +A      ++   ++                ++   A H A   G  E+++
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILAD------KSLATRTDQDSRTALHWACSAGHTEIVE 57

Query: 115 ILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
            L++           D +  + LH A+S G  E+VK LL KG+ +      NG T LH A
Sbjct: 58  FLLQLGVPVNDK---DDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYA 113

Query: 173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK 232
           A     EI   LL        + D    TA+H A    ++++V  L+       N+ D +
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTE 171

Query: 233 GNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           GN+ LH+A  + RV+  K L   G    + NK  +T L  A   G   + +     G
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEG 226

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  107 bits (268), Expect = 1e-26
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 22/228 (9%)

Query: 40  LDMISSYGDMELREML-------SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI 92
            ++  S    EL+E +       ++ +Q   TAL+ A   G+ ++V  +++        +
Sbjct: 11  CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LG---VPV 66

Query: 93  --KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
             K   G+   HIAA  G  E++K L+     +    + +  T LH A+S+   E+   L
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVML 125

Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQ 210
           LE G+           TA+H AA  G+L++V  LL  +    ++ D +G T LH+A   +
Sbjct: 126 LEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEE 183

Query: 211 SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLL-----NIN 253
            +E    LV  +   I + + +  + L +A     +           +
Sbjct: 184 RVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  113 bits (284), Expect = 2e-29
 Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK-----TALHSAARNGHLEIVKAL 184
           S    +  A+  G  E    L EKG        S  K       L +       +I   L
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 185 LSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI-----INMVDAKGNSALH 238
           ++K  G  +    K+G T      +G   ++       +  +     I  +       + 
Sbjct: 62  INK--GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 239 IATRKGR---------VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
                            + + + +G+   + +K   TAL+  ++        +++++ 
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  109 bits (274), Expect = 6e-28
 Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 24/183 (13%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT--TALHTASSQGHVEVVKFL 150
            A + Y     AA  G  E    L E   E   +   SN     L   + +   ++  FL
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 151 LEKGSTLATI-AR-SNGKTALHSAARNGH------LEIVKALLSKEPGI-VLRNDKKGQT 201
           + KG   A I +R   G T      + G        E+ K  L K  G  +    K  + 
Sbjct: 62  INKG---ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK--GADITALYKPYKI 116

Query: 202 ALHMAVKGQSIELVDELVKVEPVI------INMVDAKGNSALHIATRKGR--VQKLLNIN 253
            +   +    ++  + +   + +       + + D  G +AL    R  +    K++   
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

Query: 254 GVD 256
              
Sbjct: 177 IKK 179

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 77.8 bits (192), Expect = 8e-17
 Identities = 23/183 (12%), Positives = 49/183 (26%), Gaps = 24/183 (13%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A  +   + +    G+ E  L++     + +        +      L    +     +  
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESV---LKSNILYDVLRNNNDEARYKISM 59

Query: 80  EMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEALPELLM-------TFDSS 130
            +I       A IK+R   G   F    + G  ++       L ++ +            
Sbjct: 60  FLINKG----ADIKSRTKEGTTLFFPLFQGGGNDITG--TTELCKIFLEKGADITALYKP 113

Query: 131 NTTALHTASSQGHVE------VVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL 184
               +        V+      + K +  +      I    G TAL    R      +K +
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

Query: 185 LSK 187
              
Sbjct: 174 EDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 22/112 (19%)

Query: 59  NQSGETALYVAAEYGYVDMVR--EMIRYHDTSL----AGIKARN--GYDAFHIAAKQGCL 110
            + G T  +   + G  D+    E+ +          A I A                 +
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKI----FLEKGADITALYKPYKIVVFKNIFNYFV 127

Query: 111 EVLKILMEALPELLMTF--------DSSNTTALHTASSQGHVEVVKFLLEKG 154
           +  +  M  L +L+ +         D    TAL           +K + +  
Sbjct: 128 DENE--MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  110 bits (279), Expect = 3e-29
 Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 15/132 (11%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           NG    H+AA+ G LEV+K+L+E  A        D +  T LH A+  GH+EVVK LLE 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKG 209
           G   A +     NG+T LH AARNGHLE+VK LL     +   N  DK G+T LH+A + 
Sbjct: 58  G---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARN 111

Query: 210 QSIELVDELVKV 221
             +E+V  L++ 
Sbjct: 112 GHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  108 bits (273), Expect = 2e-28
 Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 20/135 (14%)

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKIL 116
           +G T L++AA  G++++V+ ++       AG     K +NG    H+AA+ G LEV+K+L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSA 172
           +E  A        D +  T LH A+  GH+EVVK LLE G   A +     NG+T LH A
Sbjct: 55  LEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLA 108

Query: 173 ARNGHLEIVKALLSK 187
           ARNGHLE+VK LL  
Sbjct: 109 ARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 93.9 bits (235), Expect = 3e-23
 Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 8/128 (6%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           NG+T LH AARNGHLE+VK LL     +   N  DK G+T LH+A +   +E+V  L++ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
               +N  D  G + LH+A R G ++  KLL   G D    +K+  T L  A + GH E+
Sbjct: 58  G-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116

Query: 280 GVILKEHG 287
             +L E G
Sbjct: 117 VKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.9 bits (183), Expect = 3e-16
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 17/134 (12%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL    R G +E+V  ++ +  D+         +++G T L++AA  G++++V+ ++  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN------AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A + A++  G    H+AA+ G LEV+K+L+E  A        D +  T LH A+ 
Sbjct: 58  G----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAAR 110

Query: 141 QGHVEVVKFLLEKG 154
            GH+EVVK LLE G
Sbjct: 111 NGHLEVVKLLLEAG 124

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  111 bits (280), Expect = 4e-29
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 90  AGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVV 147
           AG       D    AA +G +E ++ L+E  A P      +S     +      G   V 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVM-MMGSARVA 60

Query: 148 KFLLEKGSTLATI--ARSNGKT-ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALH 204
           + LL  G   A    A     T  +H AAR G L+ +  L      + +R D  G+  + 
Sbjct: 61  ELLLLHG---AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLPVD 116

Query: 205 MAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKG 244
           +A +    ++   L             +G++   I   +G
Sbjct: 117 LAEELGHRDVARYLRA------AAGGTRGSNHARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  109 bits (275), Expect = 2e-28
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKIL 116
                L  AA  G V+ VR ++       AG         G     +    G   V ++L
Sbjct: 11  PSADWLATAAARGRVEEVRALLE------AGANPNAPNSYGRRPIQVMM-MGSARVAELL 63

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           +   A P       ++ T  +H A+ +G ++ +  L   G+ L  +  + G+  +  A  
Sbjct: 64  LLHGAEPN--CADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEE 120

Query: 175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD 216
            GH ++ + L +           +G     +       ++ D
Sbjct: 121 LGHRDVARYLRAAAG------GTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 98.7 bits (247), Expect = 2e-24
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 25/167 (14%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
            +     L +    G VE V  ++ +  +          N  G   + V    G   +  
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAP------NSYGRRPIQVMM-MGSARVAE 61

Query: 80  EMIRYHDTSLAGIKARNGY---DAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTA 134
            ++ +     A     +        H AA++G L+ L +L    A  ++    D+     
Sbjct: 62  LLLLHG----AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR---DAWGRLP 114

Query: 135 LHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV 181
           +  A   GH +V ++L            + G       A  G  +I 
Sbjct: 115 VDLAEELGHRDVARYLRAAA------GGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 90.6 bits (226), Expect = 1e-21
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 13/142 (9%)

Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKG 209
           +E     A  +       L +AA  G +E V+ALL    G      +  G+  + + + G
Sbjct: 1   MEPA---AGSSMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMMMG 55

Query: 210 QSIELVDELVKVEPVIINMVDAKGN-SALHIATRKGR---VQKLLNINGVDKAVINKSRE 265
            S  + + L+       N  D       +H A R+G    +  L    G    V +    
Sbjct: 56  -SARVAELLLLHG-AEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGR 112

Query: 266 TALDTAEKTGHSEIGVILKEHG 287
             +D AE+ GH ++   L+   
Sbjct: 113 LPVDLAEELGHRDVARYLRAAA 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  109 bits (275), Expect = 1e-28
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 12/133 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLK 114
             S +  L  AA  G V+ VR+++       AG       R G     +    G  +V +
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLE------AGADPNALNRFGRRPIQVMM-MGSAQVAE 61

Query: 115 ILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR 174
           +L+    E      ++ T  +H A+ +G ++ +  L   G+ L  +  + G+  +  A  
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEE 120

Query: 175 NGHLEIVKALLSK 187
            GH +I + L + 
Sbjct: 121 QGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  104 bits (262), Expect = 9e-27
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 92  IKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKF 149
           +   +       AA +G +E ++ L+E  A P      +      +      G  +V + 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVM-MMGSAQVAEL 62

Query: 150 LLEKGSTLATI--ARSNGKT-ALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA 206
           LL  G   A    A     T  +H AAR G L+ +  L      + +  D  G+  + +A
Sbjct: 63  LLLHG---AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLA 118

Query: 207 VKGQSIELVDELVK 220
            +    ++   L  
Sbjct: 119 EEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  100 bits (252), Expect = 2e-25
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALL 185
             S+   L TA+++G VE V+ LLE G   A        G+  +      G  ++ + LL
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAG---ADPNALNRFGRRPIQVMM-MGSAQVAELLL 64

Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
                    +       +H A +   ++ +  L +     +++ DA G   + +A  +G 
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGH 123

Query: 246 --VQKLLNINGVD 256
             + + L+    D
Sbjct: 124 RDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 90.6 bits (226), Expect = 6e-22
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 10/130 (7%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKV 221
            +    L +AA  G +E V+ LL    G      ++ G+  + + + G S ++ + L+  
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMMG-SAQVAELLLLH 66

Query: 222 EPVIINMVDAKGN-SALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHS 277
                N  D       +H A R+G    +  L    G    V +      +D AE+ GH 
Sbjct: 67  G-AEPNCADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHR 124

Query: 278 EIGVILKEHG 287
           +I   L    
Sbjct: 125 DIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 37/97 (38%)

Query: 59  NQSGET-ALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
           + +  T  ++ AA  G++D +  + R      A +   +           G         
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAG----ARLDVCD---------AWGR-------- 112

Query: 118 EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
                            +  A  QGH ++ ++L    
Sbjct: 113 ---------------LPVDLAEEQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 226 INMVDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVI 282
           I+M+    ++ L  A  +G+   V++LL   G D   +N+     +      G +++  +
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNALNRFGRRPIQVMMM-GSAQVAEL 62

Query: 283 LKEHG 287
           L  HG
Sbjct: 63  LLLHG 67

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  107 bits (269), Expect = 6e-28
 Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
                F  A K G L+ +K  +                   LH A+  G +E+++FLL K
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRT---LEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 154 GSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS 211
           G   A I A      T L SA   GH+  VK LLSK     ++    G TA         
Sbjct: 63  G---ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDNQAI 118

Query: 212 IELV 215
             L+
Sbjct: 119 KALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  105 bits (265), Expect = 2e-27
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 20/134 (14%)

Query: 57  KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEV 112
            +    +     A + G +D V++ +        G         G    H AA  G LE+
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVA------KGEDVNRTLEGGRKPLHYAADCGQLEI 55

Query: 113 LKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA--TIARSNGKTA 168
           L+ L+   A        D  + T L +A  +GHV  VK LL KG   A  T+   +G TA
Sbjct: 56  LEFLLLKGADIN---APDKHHITPLLSAVYEGHVSCVKLLLSKG---ADKTVKGPDGLTA 109

Query: 169 LHSAARNGHLEIVK 182
             +        +++
Sbjct: 110 FEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 93.2 bits (233), Expect = 6e-23
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVE 222
           S        A +NG L+ VK  ++K   +     + G+  LH A     +E+++ L+   
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 223 PVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
              IN  D    + L  A  +G V   KLL   G DK V      TA +  +      +
Sbjct: 64  -ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNIN 253
                     A+K   ++ V + V      +N     G   LH A   G+++  + L + 
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 254 GVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
           G D    +K   T L +A   GH     +L   G
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 38.5 bits (91), Expect = 8e-04
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 4/62 (6%)

Query: 229 VDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 285
           + +  +     A + G    V+  +   G D     +     L  A   G  EI   L  
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 286 HG 287
            G
Sbjct: 62  KG 63

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  107 bits (270), Expect = 7e-28
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 16/134 (11%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKIL 116
           N  GET L++A+  G +  V  +++      +    ++  G+   H A   G L+V+++L
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNG----SDPNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN--GKTALHSA 172
           ++  AL     T    N + LH A+  GHV++VK LL  G   A+    N  G   +   
Sbjct: 63  LQHKALVN---TTGYQNDSPLHDAAKNGHVDIVKLLLSYG---ASRNAVNIFGLRPVDYT 116

Query: 173 ARNGHLEIVKALLS 186
                  ++     
Sbjct: 117 DDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  105 bits (266), Expect = 2e-27
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 11/132 (8%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
               G    HIA+ +G +  ++ L++  + P      D +  T LH A + GH++VV+ L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELL 62

Query: 151 LEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208
           L+     A +        + LH AA+NGH++IVK LLS         +  G   +     
Sbjct: 63  LQHK---ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDD 118

Query: 209 GQSIELVDELVK 220
                L+    K
Sbjct: 119 ESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (256), Expect = 5e-26
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 42/164 (25%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALL 185
           +    T LH AS +G +  V++LL+ G   +    + + G T LH A  +GHL++V+ LL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNG---SDPNVKDHAGWTPLHEACNHGHLKVVELLL 63

Query: 186 SKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243
             +  +   N    +  + LH A K   +++V                            
Sbjct: 64  QHKALV---NTTGYQNDSPLHDAAKNGHVDIV---------------------------- 92

Query: 244 GRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
               KLL   G  +  +N      +D  +      + ++ +++ 
Sbjct: 93  ----KLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 70.9 bits (175), Expect = 6e-15
 Identities = 22/139 (15%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           T L      G +  V  ++ +  D  ++      + +G T L+ A  +G++ +V  ++++
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVK------DHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 85  HDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASS 140
                A +           H AAK G ++++K+L+   A    +   +      +     
Sbjct: 66  K----ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV---NIFGLRPVDYTDD 118

Query: 141 QGHVEVVKFLLEKGSTLAT 159
           +    ++    +  S+ A+
Sbjct: 119 ESMKSLLLLPEKNESSSAS 137

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  105 bits (264), Expect = 2e-27
 Identities = 42/121 (34%), Positives = 53/121 (43%), Gaps = 15/121 (12%)

Query: 90  AGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVV 147
               +++G    H AAK G  E +K L+   A             T LH A+  GH E+V
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIV 58

Query: 148 KFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTAL 203
           K LL KG   A + ARS  G T  H A +NGH EIVK L +K   +   N          
Sbjct: 59  KLLLAKG---ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV---NARSWGSSHHH 112

Query: 204 H 204
           H
Sbjct: 113 H 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 89.0 bits (222), Expect = 2e-21
 Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 158 ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELV 215
                 +G T LH+AA+NGH E VK LLSK   +   N   K G T LH+A K    E+V
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIV 58

Query: 216 DELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETAL 268
             L+      +N     GN+  H+A + G  +  KLL+  G D    +       
Sbjct: 59  KLLLAKG-ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  102 bits (257), Expect = 5e-26
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 13/124 (10%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPG 190
             L  A+  G  + V+ L+  G   A + A+   G T L+ A  +GHLEIV+ LL     
Sbjct: 16  KKLLEAARAGQDDEVRILMANG---ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR--V 246
           +   N  D  G T LH+A     +E+ + L+K     +N  D  G +A  I+   G   +
Sbjct: 73  V---NAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDL 128

Query: 247 QKLL 250
            ++L
Sbjct: 129 AEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  100 bits (253), Expect = 1e-25
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 25/136 (18%)

Query: 96  NGYDAFHIAAKQGCLEVLKILM-------EALPELLMTFDSSNTTALHTASSQGHVEVVK 148
           +       AA+ G  + ++ILM                 D    T L+ A++ GH+E+V+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAK--------DEYGLTPLYLATAHGHLEIVE 64

Query: 149 FLLEKGSTLATI-ARSN-GKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALH 204
            LL+ G   A + A    G T LH AA  GHLEI + LL     +   N  DK G+TA  
Sbjct: 65  VLLKNG---ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV---NAQDKFGKTAFD 118

Query: 205 MAVKGQSIELVDELVK 220
           +++   + +L + L K
Sbjct: 119 ISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 96.3 bits (241), Expect = 7e-24
 Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 26/136 (19%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILM-- 117
               L  AA  G  D VR ++       A + A++  G    ++A   G LE++++L+  
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANG----ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 118 -----EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI-ARSN-GKTALH 170
                          D+   T LH A+  GH+E+ + LL+ G   A + A+   GKTA  
Sbjct: 70  GADVNAV--------DAIGFTPLHLAAFIGHLEIAEVLLKHG---ADVNAQDKFGKTAFD 118

Query: 171 SAARNGHLEIVKALLS 186
            +  NG+ ++ + L  
Sbjct: 119 ISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 90.1 bits (225), Expect = 9e-22
 Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 6/127 (4%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGI-VLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           S+    L  AAR G  + V+ L++   G  V   D+ G T L++A     +E+V+ L+K 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
               +N VDA G + LH+A   G ++  ++L  +G D    +K  +TA D +   G+ ++
Sbjct: 70  G-ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128

Query: 280 GVILKEH 286
             IL++ 
Sbjct: 129 AEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.1 bits (108), Expect = 6e-06
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI--KARNGYDAFHIAAKQGCLEVLKIL 116
           +  G T L++AA  G++++   ++++     A +  + + G  AF I+   G  ++ +IL
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHG----ADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

Query: 117 ME 118
            +
Sbjct: 133 QK 134

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  105 bits (263), Expect = 9e-26
 Identities = 47/263 (17%), Positives = 80/263 (30%), Gaps = 54/263 (20%)

Query: 62  GETALYVAAEYGYVDMVREMIRY---HD---TSLAGIKARNGYDAFHIAA---KQGCLEV 112
               L+     G  D +  ++ +   H    T     +   G      A      G  + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 113 LKILMEALPELLMTFDSSNT----------TALHTASSQGHVEVVKFLLEKG-------- 154
           + IL++   +     +  N+          TALH A  +     V+ L+EKG        
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 155 -----STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI--VLRNDKKGQTALHMAV 207
                          G+  L  AA      IV  L         + R D +G T LH  V
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 208 KGQ--SIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRE 265
                + E    + K+  +++    AK     ++                 +A++N    
Sbjct: 185 AIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNL-----------------EALLNNDGL 226

Query: 266 TALDTAEKTGHSEIGVILKEHGV 288
           + L  A KTG   I   +    +
Sbjct: 227 SPLMMAAKTGKIGIFQHIIRREI 249

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 96.4 bits (240), Expect = 1e-22
 Identities = 44/243 (18%), Positives = 83/243 (34%), Gaps = 46/243 (18%)

Query: 23  DDTPLQSLVRTGSVELVLDMIS---SYGDMELREMLSKMNQSGETALYVAA---EYGYVD 76
           +   L  +V  GS + +  ++S   ++    L +   +   +G+T L  A      G  D
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRND 63

Query: 77  MVREMI---RYHDTSLAGIKA------RNGYDAFHIAAKQGCLEVLKILME--------- 118
            +  ++            I +        G  A HIA ++ C   +++L+E         
Sbjct: 64  TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

Query: 119 ----ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR--SNGKTALHSA 172
                 P+    +       L  A+      +V +L E G   A + R  S G T LH+ 
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 173 ARNGH---------LEIVKALLSK------EPGIVLRNDKKGQTALHMAVKGQSIELVDE 217
                          ++   LL K      +  +    +  G + L MA K   I +   
Sbjct: 184 VAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243

Query: 218 LVK 220
           +++
Sbjct: 244 IIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 88.3 bits (219), Expect = 7e-20
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 34/175 (19%)

Query: 59  NQSGETALYVAAEYGYVDMVREMI------------RYHDTSLAGIKARNGYDAFHIAAK 106
              G+TAL++A E      V  ++            R+      G     G     +AA 
Sbjct: 90  YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149

Query: 107 QGCLEVLKILMEALPEL--LMTFDSSNTTALHTASSQGH---------VEVVKFLLEKG- 154
                ++  L E   +   L   DS   T LH   +             ++   LL K  
Sbjct: 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209

Query: 155 -----STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALH 204
                + L  +  ++G + L  AA+ G + I + ++ +E       D       H
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE-----IADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 36/162 (22%)

Query: 162 RSNGKTALHSAARNG----HLEIVKALLSKEPGIV---LRNDKKGQTALHMAVKGQS--- 211
           +   +  L      G       ++  LL+ +  +     R    G+T L  A+   S   
Sbjct: 2   KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 212 -------IELVDELVKVEPVI---INMVDAKGNSALHIATRKGRVQ--KLL-----NING 254
                  +++ ++   +   I      V  +G +ALHIA  +      +LL     +++ 
Sbjct: 62  NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA 121

Query: 255 VDKAVINKSR---------ETALDTAEKTGHSEIGVILKEHG 287
             +    + +         E  L  A  T    I   L E+G
Sbjct: 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 95.7 bits (239), Expect = 5e-24
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI--A 161
            +          L+     +     S     L  A+  G  + V+ L+  G   A +   
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANG---ADVAAK 53

Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
             NG T LH AARNGHLE+VK LL     +  + DK G+TA  +++   + +L + L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 88.8 bits (221), Expect = 1e-21
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN-- 195
            SS  H      L+ +G   + +  S+    L  AAR G  + V+ L++    +      
Sbjct: 1   GSSHHHHHHSSGLVPRG---SHM-GSDLGKKLLEAARAGQDDEVRILMANGADV---AAK 53

Query: 196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
           DK G T LH+A +   +E+V  L++     +   D  G +A  I+   G   
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDISIDNGNED 104

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 45/147 (30%)

Query: 44  SSYGDMELREML----SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD 99
           SS+        L    S M       L  AA  G  D VR ++             NG D
Sbjct: 2   SSHHHHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILM------------ANGAD 49

Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
              +AAK                     D + +T LH A+  GH+EVVK LLE G   A 
Sbjct: 50  ---VAAK---------------------DKNGSTPLHLAARNGHLEVVKLLLEAG---AD 82

Query: 160 IARSN--GKTALHSAARNGHLEIVKAL 184
           +   +  GKTA   +  NG+ ++ + L
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 36/116 (31%)

Query: 172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA 231
            + + H      L+ +   +           L  A +    + V  L+            
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMA----------- 45

Query: 232 KGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
                                NG D A  +K+  T L  A + GH E+  +L E G
Sbjct: 46  ---------------------NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  102 bits (254), Expect = 5e-24
 Identities = 40/251 (15%), Positives = 90/251 (35%), Gaps = 26/251 (10%)

Query: 59  NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME 118
               E  L     +  +  +   +    ++       +     H++      EV      
Sbjct: 60  KMKLEAFLQRLL-FPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN--GKTALHSAARNG 176
               L +  D    T LH  +S  ++E+VK L++ G   +     +  G++ L  A ++ 
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG---SNRLYGDNMGESCLVKAVKSV 175

Query: 177 H---LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE------------LVDELVKV 221
           +       +ALL      ++  D   +T LH  +    +             L+  +VK 
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 222 EPVIINMVDAKGNSALHIATRKGR--VQKLLNINGVDKAVIN---KSRETALDTAEKTGH 276
           +   I     +  S  +    + +  + + L++  +   ++N    + +T L+ A + G+
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 277 SEIGVILKEHG 287
             I   L ++G
Sbjct: 296 ISIVDALLDYG 306

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 88.2 bits (218), Expect = 2e-19
 Identities = 34/203 (16%), Positives = 74/203 (36%), Gaps = 24/203 (11%)

Query: 57  KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQG---CLE 111
            +++ G T L+       +++V+ ++++     +     +  G      A K        
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHG----SNRLYGDNMGESCLVKAVKSVNNYDSG 181

Query: 112 VLKILMEALPELLMTFDSSNTTALH----TASSQGHVEVVK--------FLLEKGSTLAT 159
             + L++ L   L+  DS N T LH    T+   G     K        ++++K +    
Sbjct: 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 241

Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDE 217
              +  ++  +         I++ L  K     + N  D  G T L++A +  +I +VD 
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 301

Query: 218 LVKVEPVIINMVDAKGNSALHIA 240
           L+        + +  G   +   
Sbjct: 302 LLDYG-ADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.6 bits (201), Expect = 3e-17
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 26/188 (13%)

Query: 44  SSYGDMELREML-------SKMNQSGETALYVAAEYG---YVDMVREMIRYHDTSLAGIK 93
           +S  ++EL + L          +  GE+ L  A +            ++ Y    L  ++
Sbjct: 139 TSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI-LE 197

Query: 94  ARNGYDAFHIAA----KQGCLEVLKILMEALPELLMTF--------DSSNTTALHTASSQ 141
                   H         GC    K  ++ L   ++           +   +  +  + +
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257

Query: 142 GHVEVVKFLLEKGSTLATI-AR-SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG 199
               +++ L  K      + A+ SNG T L+ AAR G++ IV ALL       + N K G
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN-KSG 316

Query: 200 QTALHMAV 207
              +    
Sbjct: 317 LRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.1 bits (184), Expect = 6e-15
 Identities = 46/247 (18%), Positives = 81/247 (32%), Gaps = 19/247 (7%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
                  L         E+   L    S   +   S+ +   H +  +   E+  A  + 
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR----- 242
           +  + +  D+ G T LH      ++ELV  LVK         D  G S L  A +     
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNY 178

Query: 243 -KGRVQKLLNINGVDKAVINKSRETAL----DTAEKTGHSEIGVILKEHGVPCGKSIKPQ 297
             G  + LL+       + +    T L     T+  TG S       +  +  G  +K Q
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILM--GWIVKKQ 236

Query: 298 ANSARELKQAVSDIKHEVHDQ-LEHTRETRKHVHGIAKRINKMHTEG---LNNAI--NST 351
               +          ++ + +  +   E       IA  +N   + G   LN A    + 
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296

Query: 352 TVVAVLI 358
           ++V  L+
Sbjct: 297 SIVDALL 303

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.3 bits (236), Expect = 8e-24
 Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 10/96 (10%)

Query: 96  NGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK 153
           NG    H+AA+ G LEV+K+L+E  A        D +  T LH A+  GH+EVVK LLE 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 154 GSTLATI--ARSNGKTALHSAARNGHLEIVKALLSK 187
           G   A +     NG+T LH AARNGHLE+VK LL  
Sbjct: 58  G---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.0 bits (235), Expect = 1e-23
 Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 10/93 (10%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATI--ARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           T LH A+  GH+EVVK LLE G   A +     NG+T LH AARNGHLE+VK LL     
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 191 IVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           +   N  DK G+T LH+A +   +E+V  L++ 
Sbjct: 61  V---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 76.6 bits (190), Expect = 1e-17
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 8/91 (8%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           NG+T LH AARNGHLE+VK LL     +   N  DK G+T LH+A +   +E+V  L++ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQ--KLL 250
               +N  D  G + LH+A R G ++  KLL
Sbjct: 58  G-ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.2 bits (181), Expect = 3e-16
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 15/100 (15%)

Query: 61  SGETALYVAAEYGYVDMVREMIRYHDTSLAG----IKARNGYDAFHIAAKQGCLEVLKIL 116
           +G T L++AA  G++++V+ ++       AG     K +NG    H+AA+ G LEV+K+L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 117 ME--ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
           +E  A        D +  T LH A+  GH+EVVK LLE G
Sbjct: 55  LEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 198 KGQTALHMAV---KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNI 252
             +  LH+AV      S+ LVD ++      ++   A GN+ALH A    +    KLL  
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 247

Query: 253 NGVDKAVINKSRETALDTAEKTGHSEIGVILKE 285
                  +N++ ETALD A K  H E   +L++
Sbjct: 248 GRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 121 PELLMTFDSSNTTALHTASSQGH---VEVVKFLLEKGSTLATIARSNGKTALHSAARNGH 177
           P       +     LH A    +   + +V F+++ G  L     ++G TALH AA    
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQ 238

Query: 178 LEIVKALLSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
            + +K LL      G V   ++ G+TAL +A K    E  + L +
Sbjct: 239 PDCLKLLLKGRALVGTV---NEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 22/116 (18%)

Query: 100 AFHIAAKQGCLEVLKILMEALPELLM-------TFDSSNTTALHTASSQGHVEVVKFLLE 152
             H+A K      L ++     + ++          +   TALH A+     + +K LL+
Sbjct: 193 VLHLAVKVANQASLPLV-----DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 247

Query: 153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208
             + +       G+TAL  A +  H E            +L   + G  A  + V 
Sbjct: 248 GRALV-GTVNEAGETALDIARKKHHKECE---------ELLEQAQAGTFAFPLHVD 293

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 62.7 bits (152), Expect = 5e-11
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 195 NDKKGQTALHMAVKG--QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLL 250
             +  +TALH+AV+   ++   + + +      ++    KG++ALH        +  KLL
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 251 NINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 285
                   + N+S ET LD A++  H     +L +
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 128 DSSNTTALHTASSQG---HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL 184
              + TALH A        + +V FL++    L       G TALH      + E +K L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 185 LSK--EPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
           L       I    ++ G+T L +A + +     + L +
Sbjct: 225 LRGKASIEIA---NESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 161 ARSNGKTALHSAARNGHLEIVKA--LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
                +TALH A R+     +     L +  G + +   KG TALH      + E +  L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 219 VKVEPVIINMVDAKGNSALHIATRKGRVQ 247
           ++     I + +  G + L IA R     
Sbjct: 225 LR-GKASIEIANESGETPLDIAKRLKHEH 252

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 31  VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYG--YVDMVREMIRYHDTS 88
           V+T  +  +L   +   D+  +  L+  ++  ETAL++A          + + +  +  +
Sbjct: 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN 197

Query: 89  LAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTASSQGHVEV 146
           L   +   G  A H        E LK+L+   A  E+    + S  T L  A    H   
Sbjct: 198 L-DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA---NESGETPLDIAKRLKHEHC 253

Query: 147 VKFLLE 152
            + L +
Sbjct: 254 EELLTQ 259

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 61.0 bits (147), Expect = 3e-10
 Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 10/172 (5%)

Query: 163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRN-DKKGQTALHMAVKGQSIELVDELVKV 221
             G     ++     L  +   L+    +   N  +   T L  A    S+   + L+  
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL-Q 256

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
               +N  D+ G   LH AT  G      L    G D    +      L  A +T +++I
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316

Query: 280 GVILKEHGVPCGKSIKPQANSARELKQAV----SDIKHEVHDQLEHTRETRK 327
             +L+       ++   Q  +  E    +    S +  +  ++L        
Sbjct: 317 VTLLRL--AKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLH 366

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
              N T L  A++   +   +FLL+ G+ +   A S G+  LH A   GH  +    L +
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
              +  R D +G+  L +A++  + ++V  L 
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLLR 321

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 169 LHSAARNGHLEIVKALL-----SKEPGIVLRNDKKGQTALHMAVK---GQSIELVDELVK 220
           L +A  N  L  V           +P          +  LH+AVK     S+ LVD +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 221 VEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSE 278
                ++   A GN+ALH A    +    KLL         +N++ ETALD A K  H E
Sbjct: 196 -NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254

Query: 279 IGVILK 284
              +L+
Sbjct: 255 CEELLE 260

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 116 LMEALPELLMTFDSSNTTALHTA---SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
             + LP       +     LH A   ++Q  + +V F+++ G  L   A ++G TALH A
Sbjct: 158 FGQPLPG--PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYA 214

Query: 173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP 223
           A     + +K LL     +   N + G+TAL +A K    E  + L + + 
Sbjct: 215 ALYNQPDCLKLLLKGRALVGTVN-EAGETALDIARKKHHKECEELLEQAQA 264

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 12  KKMKKQLTAKRDDTP--LQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVA 69
           K ++ +   +    P  L + +    +  VL+  ++  D              E  L++A
Sbjct: 119 KYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLA 178

Query: 70  ---AEYGYVDMVREMIRYHDTSLAGIKAR--NGYDAFHIAAKQGCLEVLKILME--ALPE 122
              A    + +V  +I+        + A+  +G  A H AA     + LK+L++  AL  
Sbjct: 179 VKVANQASLPLVDFIIQNG----GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234

Query: 123 LLMTFDSSNTTALHTASSQGHVEVVKFL 150
            +   + +  TAL  A  + H E  + L
Sbjct: 235 TV---NEAGETALDIARKKHHKECEELL 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 59/392 (15%), Positives = 109/392 (27%), Gaps = 126/392 (32%)

Query: 11  WKKMKKQLTAKRDDTPLQSLVRTGSVELV--LDMISSY------GDMELREMLSKMNQSG 62
           W  +K   + +     LQ L+           D  S+          ELR +L   ++  
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPY 243

Query: 63  ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
           E  L V      +  V+      +            +AF++     C    KIL      
Sbjct: 244 ENCLLV------LLNVQ------NAKAW--------NAFNL----SC----KIL------ 269

Query: 123 LLMTFDSSNTTALHTASSQGHVEVVKFL--LEKGSTLATIARSNGKTALHSAARNGHLEI 180
            L T     T  L +A++  H+ +      L      +                      
Sbjct: 270 -LTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKS---------------------- 305

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
              LL K               L    +    +L  E++   P  ++++         I 
Sbjct: 306 ---LLLK--------------YLDCRPQ----DLPREVLTTNPRRLSIIAES------IR 338

Query: 241 TRKGRVQKLLNINGVDK--AVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQA 298
                     ++N  DK   +I  S    L+ AE     +   +           I    
Sbjct: 339 DGLATWDNWKHVN-CDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPS-AH----IPTIL 391

Query: 299 NS---ARELKQAVSDIKHEVHDQL---EHTRETRKHVHGIAKRINKMHTEGLNNAINSTT 352
            S      +K  V  + +++H      +  +E+   +  I   + K+  E      N   
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLE------NEYA 444

Query: 353 VVAVLIATVAFAAIFSVPGQFADKPDELPPKV 384
           +   ++        F       D  D +PP +
Sbjct: 445 LHRSIVDHYNIPKTF-------DSDDLIPPYL 469

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	534
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.72
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.72
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.6
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.6

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-40  Score=323.00  Aligned_cols=261  Identities=24%  Similarity=0.324  Sum_probs=233.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHH
Q 009452           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (534)
                      +|.||||.|++.|+.++|++|++.+.+.+     ...+..|.||||+|+..|+.+++++|++.+.  ..+..+..|.|||
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L   76 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVN-----FQEEEGGWTPLHNAVQMSREDIVELLLRHGA--DPVLRKKNGATPF   76 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTT-----CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTCCCHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcc-----cccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHH
Confidence            57899999999999999999999987642     1226789999999999999999999999874  4566788999999


Q ss_pred             HHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhh---------hhcCCCcHHHHH
Q 009452          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI---------ARSNGKTALHSA  172 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---------~~~~g~tpLh~A  172 (534)
                      |+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|+++...         .+..|.||||.|
T Consensus        77 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A  155 (285)
T 1wdy_A           77 LLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  155 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCc-cCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHH
Confidence            999999999999999999987654 4899999999999999999999999999887332         167899999999


Q ss_pred             HHcCcHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHhCCC----HHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH-
Q 009452          173 ARNGHLEIVKALLSK-EPGIVLRNDKKGQTALHMAVKGQS----IELVDELVKVEPVIINMVDAKGNSALHIATRKGRV-  246 (534)
Q Consensus       173 ~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~-  246 (534)
                      +..|+.+++++|++. +.++. ..|..|.||||.|+..++    .+++++|++ .+.+++.+|..|+||||+|+..++. 
T Consensus       156 ~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~  233 (285)
T 1wdy_A          156 AEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            999999999999998 66654 458999999999999999    999999999 6778999999999999999999986 


Q ss_pred             -HHHhhh-cCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCC
Q 009452          247 -QKLLNI-NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK  292 (534)
Q Consensus       247 -~~ll~~-~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~  292 (534)
                       .++|+. .|++++..|..|.|||++|+..++.+++++|+++|+++..
T Consensus       234 ~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence             466666 9999999999999999999999999999999999998754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-39  Score=338.18  Aligned_cols=265  Identities=28%  Similarity=0.436  Sum_probs=147.1

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      +..+..|.||||+|++.|+.++|++|++.+.++      +..+..|.||||+|+..|+.+++++|++.+..  ....+..
T Consensus        74 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~  145 (437)
T 1n11_A           74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP------NLATTAGHTPLHIAAREGHVETVLALLEKEAS--QACMTKK  145 (437)
T ss_dssp             SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTT
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CcCCCCC
Confidence            345678888888888888888888888887654      23355566666666666666666666665422  2334445


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCch------------------
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA------------------  158 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~------------------  158 (534)
                      |.||||+|+..|+.+++++|++++.+... .|..|.||||+|+..|+.+++++|++++.++.                  
T Consensus       146 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  224 (437)
T 1n11_A          146 GFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ  224 (437)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            55555555555555555555555544332 24455555555555555555555555554431                  


Q ss_pred             --------------hhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCc
Q 009452          159 --------------TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPV  224 (534)
Q Consensus       159 --------------~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~  224 (534)
                                    ...+..|.||||+|+..|+.+++++|++++++... .|..|.||||+|+..|+.+++++|++ .+.
T Consensus       225 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~  302 (437)
T 1n11_A          225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVADVLIK-HGV  302 (437)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHH-HTC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHh-CCc
Confidence                          23334444555555555555555555554444332 24445555555555555555555554 234


Q ss_pred             cccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCC
Q 009452          225 IINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK  292 (534)
Q Consensus       225 ~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~  292 (534)
                      +++.+|..|+||||+|+..|+.  .++|+..|++++.+|..|.||||+|+..|+.+++++|+++|+++..
T Consensus       303 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC
Confidence            4455555555555555555543  4455555555555555555555555555555555555555555443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1e-39  Score=329.07  Aligned_cols=261  Identities=26%  Similarity=0.337  Sum_probs=188.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcC-CCCCcHHHHHHHcCCHHHHHHHHHhCCcc--------
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMN-QSGETALYVAAEYGYVDMVREMIRYHDTS--------   88 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n-~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~--------   88 (534)
                      ..+.+|+|+||.||+.|++++|+.|++.|++++      .++ ..|.||||+||..|+.++|++|++++...        
T Consensus        20 ~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn------~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~   93 (337)
T 4g8k_A           20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVN------FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA   93 (337)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTT------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCC------ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCC
Confidence            345568899999999999999999999998753      334 45999999999999999999999987532        


Q ss_pred             -----------------------cccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccc---------cCCCCCCcHHH
Q 009452           89 -----------------------LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM---------TFDSSNTTALH  136 (534)
Q Consensus        89 -----------------------~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~---------~~d~~g~tpLh  136 (534)
                                             ..+..+..|.||||+|+..|+.+++++|+++++++..         ..+..|.||||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~  173 (337)
T 4g8k_A           94 TPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  173 (337)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred             chhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence                                   2234556677777777777777777777777654421         22455777777


Q ss_pred             HHHhcCCHHHHHHHHhc-CCCchhhhhcCCCcHHHHHHHcCc----HHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCC
Q 009452          137 TASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGH----LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS  211 (534)
Q Consensus       137 ~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  211 (534)
                      +|+..|+.+++++|+++ |+++ +..+..|.||+|.++..++    .+++++|+++|++++.. |..|+||||+|+..|+
T Consensus       174 ~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~-d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          174 DAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC-CGGGCCHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhhh
Confidence            77777777777777753 5655 5566677777776654332    35667777777766543 6677777777777777


Q ss_pred             HHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCC
Q 009452          212 IELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  289 (534)
Q Consensus       212 ~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~  289 (534)
                      .++++.|+...+.++|.+|.+|+||||+|++.|+.  .++|+++|+++|.     .+||++|+..|+.+++++|+++||+
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~  326 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLLSHGAK  326 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            77777777766667777777777777777777765  5677777777654     3477777777777777777777776


Q ss_pred             CC
Q 009452          290 CG  291 (534)
Q Consensus       290 ~~  291 (534)
                      ++
T Consensus       327 ~d  328 (337)
T 4g8k_A          327 ED  328 (337)
T ss_dssp             C-
T ss_pred             CC
Confidence            54

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-38  Score=333.00  Aligned_cols=267  Identities=27%  Similarity=0.387  Sum_probs=223.1

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      +..+..|.||||.|++.|+.++|++|++.+.+.      +.++..|.||||+|+..|+.+++++|++.+.  +.+..+..
T Consensus        41 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~~~~  112 (437)
T 1n11_A           41 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV------NAKAKDDQTPLHCAARIGHTNMVKLLLENNA--NPNLATTA  112 (437)
T ss_dssp             CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC--CTTCCCTT
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCC--CCCCCCCC
Confidence            456788999999999999999999999998763      5668899999999999999999999999874  45667889


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  176 (534)
                      |.||||+|+..|+.+++++|++.+.+... .+..|.||||+|+..|+.+++++|+++++++ ...+..|.||||+|+..|
T Consensus       113 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  190 (437)
T 1n11_A          113 GHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHN  190 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcC
Confidence            99999999999999999999999887644 4889999999999999999999999999987 567788999999999999


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcC
Q 009452          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNING  254 (534)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g  254 (534)
                      +.+++++|++++.++... +..|.||||.|+..|+.+++++|++ .+.+++..|..|.||||+|+..++.  .++|+..|
T Consensus       191 ~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  268 (437)
T 1n11_A          191 NLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ  268 (437)
T ss_dssp             CHHHHHHHGGGTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC
Confidence            999999999988876543 6778888888888888888888887 4556777777777777777777765  56666777


Q ss_pred             CChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCC
Q 009452          255 VDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK  295 (534)
Q Consensus       255 ~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~  295 (534)
                      ++++..|..|.|||++|+..|+.+++++|+++|++......
T Consensus       269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  309 (437)
T 1n11_A          269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR  309 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCC
Confidence            77777777777777777777777777777777776654433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.8e-40  Score=322.14  Aligned_cols=265  Identities=21%  Similarity=0.182  Sum_probs=202.4

Q ss_pred             hhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChh-----HHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccc
Q 009452           16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDME-----LREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLA   90 (534)
Q Consensus        16 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-----~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~   90 (534)
                      .+-...+|.|+||+|++.|+.+.+..++..++...     ....+...+..|.||||+||..|+.+++++|++.+  .+.
T Consensus         8 ~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~   85 (285)
T 3d9h_A            8 HHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAV   85 (285)
T ss_dssp             ----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCS
T ss_pred             ccccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCC
Confidence            34456889999999999999888888776543210     01124567889999999999999999999999987  446


Q ss_pred             cccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHH
Q 009452           91 GIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH  170 (534)
Q Consensus        91 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh  170 (534)
                      +.++.+|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|+++|+++.  .+.+|.||||
T Consensus        86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~  162 (285)
T 3d9h_A           86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIH  162 (285)
T ss_dssp             CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHH
T ss_pred             CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHH
Confidence            77899999999999999999999999999887654 48999999999999999999999999998873  3456999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HH
Q 009452          171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QK  248 (534)
Q Consensus       171 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~  248 (534)
                      +|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++ .+.+++ .|..|+||||+|+..++.  .+
T Consensus       163 ~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~-~~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          163 EAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLE-SGADVN-QGKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTT-CCBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCC-CCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999987654 8899999999999999999999999 466677 489999999999999986  68


Q ss_pred             HhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhc-CCCC
Q 009452          249 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH-GVPC  290 (534)
Q Consensus       249 ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~-g~~~  290 (534)
                      +|+..|++++.+|..|+||+++|+  ++.+++++|+++ |++.
T Consensus       240 ~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          240 LLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASL  280 (285)
T ss_dssp             HHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence            889999999999999999999999  557899999988 6654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-39  Score=332.20  Aligned_cols=261  Identities=18%  Similarity=0.228  Sum_probs=225.6

Q ss_pred             hhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcC-CCCCcHHHHHHHcCCHHHHHHHH--------HhCC
Q 009452           16 KQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMN-QSGETALYVAAEYGYVDMVREMI--------RYHD   86 (534)
Q Consensus        16 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n-~~g~T~Lh~Aa~~g~~~iv~~Ll--------~~~~   86 (534)
                      ....+..|.||||.|+..|+ ++++.|+...        ++..+ ..|.||||+|+..|+.+++++|+        +.+ 
T Consensus        87 ~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~--------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g-  156 (373)
T 2fo1_E           87 PTEPEPESPIKLHTEAAGSY-AITEPITRES--------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG-  156 (373)
T ss_dssp             -------CCCHHHHHHHSSS-CCCSCCSTTT--------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC-
T ss_pred             ccCCCCCCccHHHHHhcCCc-hHHHHhcccc--------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-
Confidence            34567899999999999665 7777776532        34556 68999999999999998888876        555 


Q ss_pred             cccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcC---CCchhhhhc
Q 009452           87 TSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG---STLATIARS  163 (534)
Q Consensus        87 ~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~---~~~~~~~~~  163 (534)
                       .+.+..|..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|++++   .++ ...+.
T Consensus       157 -a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~  233 (373)
T 2fo1_E          157 -ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDR  233 (373)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCT
T ss_pred             -CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc-cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCC
Confidence             45677899999999999999999999999999988754 4899999999999999999999999987   454 55788


Q ss_pred             CCCcHHHHHHHcC---cHHHHHHHHhcCCCCcc-------cCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCC
Q 009452          164 NGKTALHSAARNG---HLEIVKALLSKEPGIVL-------RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG  233 (534)
Q Consensus       164 ~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G  233 (534)
                      .|.||||+|+..|   +.+++++|++.++++..       ..|..|.||||+|+..|+.+++++|++..+.+++.+|.+|
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g  313 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG  313 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCC
Confidence            9999999999998   99999999999998764       2467899999999999999999999997778999999999


Q ss_pred             CcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCC
Q 009452          234 NSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  289 (534)
Q Consensus       234 ~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~  289 (534)
                      +||||+|+..|+.  .++|+..|++++..|..|.|||++|+..|+.+++++|+++|++
T Consensus       314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999986  6889999999999999999999999999999999999999875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1e-38  Score=325.14  Aligned_cols=265  Identities=19%  Similarity=0.188  Sum_probs=226.3

Q ss_pred             HHHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc
Q 009452           12 KKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAG   91 (534)
Q Consensus        12 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~   91 (534)
                      .++.....|..|.||||+|++.|+.++|++|++.+.+.      +..|..|.||||+|+..|+.++|++|++.+.    .
T Consensus         9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~   78 (364)
T 3ljn_A            9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP------TIQNRFGCTALHLACKFGCVDTAKYLASVGE----V   78 (364)
T ss_dssp             -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----C
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----C
Confidence            34556677889999999999999999999999998764      5678999999999999999999999999985    3


Q ss_pred             ccccCCCcHHHHHHHCCCHHHHHHHHhh----Cccccc----------------cCCCCCCcHHHHHHhcC--CHHHHHH
Q 009452           92 IKARNGYDAFHIAAKQGCLEVLKILMEA----LPELLM----------------TFDSSNTTALHTASSQG--HVEVVKF  149 (534)
Q Consensus        92 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~----~~~~~~----------------~~d~~g~tpLh~A~~~g--~~~~v~~  149 (534)
                      ..+.+|.||||+|+..|+.+++++|++.    +.+...                ..|..|.||||+|+..|  +.+++++
T Consensus        79 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~  158 (364)
T 3ljn_A           79 HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI  158 (364)
T ss_dssp             CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            3445899999999999999999999998    444332                14778999999999999  9999999


Q ss_pred             HHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCC----cccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCcc
Q 009452          150 LLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGI----VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI  225 (534)
Q Consensus       150 Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~  225 (534)
                      |+++|+++ ...|..|.||||+|+..|+.+++++|++++++.    ....|..|.||||+|+..|+.+++++|++ .+.+
T Consensus       159 Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad  236 (364)
T 3ljn_A          159 LVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGID  236 (364)
T ss_dssp             HHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCC
T ss_pred             HHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            99999997 667889999999999999999999999999882    33458899999999999999999999999 6788


Q ss_pred             ccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHh------------hhccCCcHHHHHHhcCchhHHHHHHhcCC
Q 009452          226 INMVDAKGNSALHIATRKGRV--QKLLNINGVDKAV------------INKSRETALDTAEKTGHSEIGVILKEHGV  288 (534)
Q Consensus       226 in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~------------~n~~g~T~l~~A~~~~~~~i~~~L~~~g~  288 (534)
                      ++.+|.+|.||||+|+..|+.  .++|+..|++++.            .+..+.||+..|+..++.+.+..|++.++
T Consensus       237 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~  313 (364)
T 3ljn_A          237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL  313 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence            999999999999999999986  6888888887755            45678899999999988877777766553

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.3e-37  Score=312.45  Aligned_cols=274  Identities=24%  Similarity=0.297  Sum_probs=235.0

Q ss_pred             hhhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccc
Q 009452           15 KKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA   94 (534)
Q Consensus        15 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   94 (534)
                      ....++..+.++||.|++.|+.+.|+.++.....     .++..|..|.||||+|+..|+.+++++|++.+  .+.+.++
T Consensus        16 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~   88 (351)
T 3utm_A           16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV-----NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKD   88 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTT-----TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCC
T ss_pred             eeeeeccccchhHHHHHHcCCHHHHHHHHHhcCC-----CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccC
Confidence            3456677888999999999999999999986431     24567889999999999999999999999987  4566788


Q ss_pred             cCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHH--
Q 009452           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA--  172 (534)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A--  172 (534)
                      ..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|+++ ...+..|.+|++.|  
T Consensus        89 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~  166 (351)
T 3utm_A           89 KGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPT  166 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSS
T ss_pred             CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhh
Confidence            9999999999999999999999999887654 4899999999999999999999999999987 56788888887764  


Q ss_pred             -------------------HHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhC---CCHHHHHHHhhcCCccccccC
Q 009452          173 -------------------ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG---QSIELVDELVKVEPVIINMVD  230 (534)
Q Consensus       173 -------------------~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~~iv~~Ll~~~~~~in~~d  230 (534)
                                         +..++.+.++.++..... ....+..|.||||.|+..   +..+++++|++ .+.+++.+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~  244 (351)
T 3utm_A          167 PELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKN  244 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCC
T ss_pred             hhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcC
Confidence                               556666777777766543 334578899999999998   56899999998 677899999


Q ss_pred             CCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCCccc
Q 009452          231 AKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQAN  299 (534)
Q Consensus       231 ~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~  299 (534)
                      .+|+||||+|+..|+.  .++|+..|++++.+|..|+|||++|+..|+.+++++|+++|+++.........
T Consensus       245 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~t  315 (351)
T 3utm_A          245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT  315 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence            9999999999999986  68889999999999999999999999999999999999999987665544433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.1e-37  Score=294.87  Aligned_cols=231  Identities=24%  Similarity=0.282  Sum_probs=183.4

Q ss_pred             HHhcCCCCCcHHHHHHHcCCHHHHHHHHHh--CCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCC
Q 009452           55 LSKMNQSGETALYVAAEYGYVDMVREMIRY--HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT  132 (534)
Q Consensus        55 l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~--~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~  132 (534)
                      ++.+|.+|.||||+|+..|+.+++++|++.  ..+...+..+..|.||||+|+..|+.+++++|++.+.+... .|..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA-LDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCC
Confidence            355678888888888888888888888872  11245566778888899988888888888888888876544 478888


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCC----CchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHh
Q 009452          133 TALHTASSQGHVEVVKFLLEKGS----TLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK  208 (534)
Q Consensus       133 tpLh~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  208 (534)
                      ||||+|+..|+.+++++|++.++    ++ ...+..|.||||+|+..|+.+++++|++.++++....+..|.||||+|+.
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            89999998889999998888876    33 55677888999999999999999999988888776544788899999999


Q ss_pred             CCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhc
Q 009452          209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH  286 (534)
Q Consensus       209 ~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~  286 (534)
                      .|+.+++++|++ .+.+++.+|.+|+||||+|+..++.  .++|+..|++++.+|..|.||+++|+..|+.++++.|.+.
T Consensus       160 ~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          160 NNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             cCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            999999999988 5677888899999999999988875  6788888999999999999999999999999999888776


Q ss_pred             CC
Q 009452          287 GV  288 (534)
Q Consensus       287 g~  288 (534)
                      ++
T Consensus       239 ~a  240 (241)
T 1k1a_A          239 PA  240 (241)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.5e-37  Score=298.71  Aligned_cols=213  Identities=22%  Similarity=0.256  Sum_probs=151.9

Q ss_pred             cCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHH
Q 009452           72 YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLL  151 (534)
Q Consensus        72 ~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  151 (534)
                      .++.+++++|++.+... ....+..|.||||+|+..|+.+++++|++++++... .|..|.||||+|+..|+.+++++|+
T Consensus        33 ~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll  110 (253)
T 1yyh_A           33 EDAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILI  110 (253)
T ss_dssp             --------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCChHHHHHHHHccCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            33777888888766432 233467788888888888888888888887776543 3777888888888888888888888


Q ss_pred             hcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCC
Q 009452          152 EKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDA  231 (534)
Q Consensus       152 ~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~  231 (534)
                      ++++......+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++ .+.+++.+|.
T Consensus       111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~  188 (253)
T 1yyh_A          111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNN  188 (253)
T ss_dssp             HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCT
T ss_pred             HcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC
Confidence            8876444666777888888888888888888888887776544 6778888888888888888888887 5667788888


Q ss_pred             CCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCC
Q 009452          232 KGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV  288 (534)
Q Consensus       232 ~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~  288 (534)
                      .|+||||+|+..++.  .++|+..|++++..|..|.||+++|+..|+.+++++|.....
T Consensus       189 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          189 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            888888888888875  577788888888888888999999999999999998876543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.7e-36  Score=287.90  Aligned_cols=219  Identities=24%  Similarity=0.364  Sum_probs=178.1

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      +.+|..|.||||.|++.|+.+++++|++.+.+.      +..+..|.||||+|+..|+.+++++|++.+.  ..+.++..
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~   76 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI------DTCSEDQRTPLMEAAENNHLEAVKYLIKAGA--LVDPKDAE   76 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC--CCCCCCTT
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc------CccCCCCCCHHHHHHHhCCHHHHHHHHhCCC--CCCCCCCC
Confidence            467788888888888888888888888887653      4557788888888888888888888888763  45556778


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  176 (534)
                      |.||||+|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCC
Confidence            8888888888888888888888876555666788888888888888888888888888876 556778888888888888


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH
Q 009452          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (534)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~  246 (534)
                      +.+++++|++.++++... |..|.||||+|++.++.+++++|++ .+.+++.+|.+|+||||+|+..++.
T Consensus       156 ~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAV-NIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred             CHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHH
Confidence            888888888888876544 7788888888888888888888887 5667788888888888888887765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.2e-37  Score=294.71  Aligned_cols=226  Identities=22%  Similarity=0.258  Sum_probs=174.2

Q ss_pred             hhcCCCCCCcHHHHHHHcC-------------CHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHH
Q 009452           16 KQLTAKRDDTPLQSLVRTG-------------SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI   82 (534)
Q Consensus        16 ~~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll   82 (534)
                      .+.+|.+|.||||.|+..|             +.++++.|++.+.+.     ....|..|.||||+|+..|+.+++++|+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   77 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-----HNQTDRTGETALHLAARYSRSDAAKRLL   77 (253)
T ss_dssp             ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc-----ccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3567899999999999987             899999999998642     3456889999999999999999999999


Q ss_pred             HhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhh
Q 009452           83 RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIAR  162 (534)
Q Consensus        83 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~  162 (534)
                      +.+  .+.+..+..|.||||+|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.|+++ ...|
T Consensus        78 ~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d  154 (253)
T 1yyh_A           78 EAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVD  154 (253)
T ss_dssp             HTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBC
T ss_pred             HcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcC
Confidence            987  4566788999999999999999999999999988666677999999999999999999999999999987 6678


Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHH
Q 009452          163 SNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR  242 (534)
Q Consensus       163 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~  242 (534)
                      ..|.||||+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+.
T Consensus       155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~  232 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQE  232 (253)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHH
Confidence            89999999999999999999999999987654 8999999999999999999999999 677899999999999999999


Q ss_pred             cCcH--HHHhh
Q 009452          243 KGRV--QKLLN  251 (534)
Q Consensus       243 ~~~~--~~ll~  251 (534)
                      .|+.  ..++.
T Consensus       233 ~g~~~i~~~l~  243 (253)
T 1yyh_A          233 RMHHDIVRLLD  243 (253)
T ss_dssp             TTCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            9986  34444

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.5e-37  Score=298.86  Aligned_cols=252  Identities=19%  Similarity=0.172  Sum_probs=187.4

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      ...|..|.||||+|++.|+.++|++|++.+.+.   ..++.++..|.||||+|+..|+.+++++|++.+  ...+.++..
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~   77 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERG   77 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTT
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCC
Confidence            457899999999999999999999999988763   235678899999999999999999999999987  445678889


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccc------------cCCCCCCcHHHHHHhcCCHHHHH-HHHhcCCCchhhhhc
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLM------------TFDSSNTTALHTASSQGHVEVVK-FLLEKGSTLATIARS  163 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~------------~~d~~g~tpLh~A~~~g~~~~v~-~Ll~~~~~~~~~~~~  163 (534)
                      |.||||+|+..|+.+++++|+++++....            .....+.++++.++..+...... .+...+.++ ...+.
T Consensus        78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  156 (282)
T 1oy3_D           78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENY  156 (282)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT-TCCCT
T ss_pred             CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcC-CCcCC
Confidence            99999999999999999999998765321            11334667777776655443333 333344444 55788


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHc
Q 009452          164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK  243 (534)
Q Consensus       164 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~  243 (534)
                      .|.||||+|+..|+.+++++|+++++++....+..|+||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTS
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHc
Confidence            899999999999999999999999999877644569999999999999999999999 5788999999999999999999


Q ss_pred             CcH--HHHhhhcCCChHhhhccCCcHHHHHHhcC
Q 009452          244 GRV--QKLLNINGVDKAVINKSRETALDTAEKTG  275 (534)
Q Consensus       244 ~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~  275 (534)
                      ++.  .++|+.+|++++.+|..|.||+++|....
T Consensus       236 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          236 PNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             SCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             CCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            986  68999999999999999999999987554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-35  Score=290.61  Aligned_cols=233  Identities=26%  Similarity=0.338  Sum_probs=211.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCc
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (534)
                      +..|.||||+|++.|+.+++++|++.+.+.      +..+..|.||||+|+..|+.+++++|++.+  ...+..+..|.|
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t  107 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADP------VLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECDFYGFT  107 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBCTTCCB
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCcccCC
Confidence            677899999999999999999999998764      456889999999999999999999999987  445677889999


Q ss_pred             HHHHHHHCCCHHHHHHHHhhCccccccC---------CCCCCcHHHHHHhcCCHHHHHHHHhc-CCCchhhhhcCCCcHH
Q 009452          100 AFHIAAKQGCLEVLKILMEALPELLMTF---------DSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTAL  169 (534)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL  169 (534)
                      |||+|+..|+.+++++|++.+++.....         +..|.||||+|+..|+.+++++|++. +.++ ...+..|.|||
T Consensus       108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l  186 (285)
T 1wdy_A          108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNAL  186 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHH
Confidence            9999999999999999999988764332         67899999999999999999999998 7776 66788999999


Q ss_pred             HHHHHcCc----HHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCc
Q 009452          170 HSAARNGH----LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR  245 (534)
Q Consensus       170 h~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~  245 (534)
                      |.|+..|+    .+++++|++.+.++... |..|.||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|+..++
T Consensus       187 ~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~  265 (285)
T 1wdy_A          187 IHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             HHHHHCSCTTTHHHHHHHHHHTTCCSSCC-CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHccccchHHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc
Confidence            99999999    99999999999987654 88999999999999999999999997888999999999999999999998


Q ss_pred             H--HHHhhhcCCChHhhhc
Q 009452          246 V--QKLLNINGVDKAVINK  262 (534)
Q Consensus       246 ~--~~ll~~~g~~~~~~n~  262 (534)
                      .  .++|+++|++++.+|.
T Consensus       266 ~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          266 KKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHHHHHcCCCCCcccc
Confidence            6  6899999999988763

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.4e-36  Score=285.30  Aligned_cols=224  Identities=27%  Similarity=0.337  Sum_probs=202.3

Q ss_pred             HhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHH
Q 009452           56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL  135 (534)
Q Consensus        56 ~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  135 (534)
                      +..+..|.||||+|+..|+.+++++|++.+.  ..+..+..|.||||+|+..|+.+++++|++.+.+... .|..|.|||
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L   81 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGA--NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-KDAEGSTCL   81 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC-CCTTSCCHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCC--CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCcHH
Confidence            4567899999999999999999999999874  4566788999999999999999999999999887654 488999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHH
Q 009452          136 HTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV  215 (534)
Q Consensus       136 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv  215 (534)
                      |+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.++++.. .|..|.||||.|+..|+.+++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999999544477888999999999999999999999999998765 488999999999999999999


Q ss_pred             HHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHH
Q 009452          216 DELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILK  284 (534)
Q Consensus       216 ~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~  284 (534)
                      ++|++ .+.+++.+|..|.||||+|+..++.  .++|+.+|++++.+|..|.||+++|+..++.+.+..+.
T Consensus       161 ~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          161 EILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999 5678999999999999999999986  68889999999999999999999999999875544443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.7e-35  Score=297.24  Aligned_cols=256  Identities=22%  Similarity=0.264  Sum_probs=223.4

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      ..|..|.||||+|+..|+.++|++|++.+.+.      +..|..|.||||+|+..|+.+++++|++.+  ...+..+..|
T Consensus        53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~~~~~g  124 (351)
T 3utm_A           53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV------HAKDKGGLVPLHNACSYGHYEVTELLLKHG--ACVNAMDLWQ  124 (351)
T ss_dssp             CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCC
Confidence            46788999999999999999999999998764      566899999999999999999999999987  4456688899


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHH---------------------HhcCCHHHHHHHHhcCCC
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA---------------------SSQGHVEVVKFLLEKGST  156 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A---------------------~~~g~~~~v~~Ll~~~~~  156 (534)
                      .||||+|+..|+.+++++|++++++.... +..|.||+++|                     +..++.+.++.++..+..
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  203 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII  203 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc
Confidence            99999999999999999999998876544 88899998765                     556677777777776544


Q ss_pred             chhhhhcCCCcHHHHHHHc---CcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCC
Q 009452          157 LATIARSNGKTALHSAARN---GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG  233 (534)
Q Consensus       157 ~~~~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G  233 (534)
                      . ...+..|.||||+|+..   +..+++++|++.+.++... |..|+||||+|+..|+.+++++|++ .+.++|.+|..|
T Consensus       204 ~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g  280 (351)
T 3utm_A          204 N-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK-NKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLG  280 (351)
T ss_dssp             T-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTS
T ss_pred             c-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCC
Confidence            3 44567899999999999   6689999999999987654 8899999999999999999999999 678899999999


Q ss_pred             CcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCC
Q 009452          234 NSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  289 (534)
Q Consensus       234 ~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~  289 (534)
                      +||||+|+..++.  .++|+..|++++..|..|.||+++|    +.++.++|.+.+..
T Consensus       281 ~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          281 QTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            9999999999986  6899999999999999999999998    56788888877654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.6e-36  Score=285.84  Aligned_cols=212  Identities=25%  Similarity=0.343  Sum_probs=116.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCc
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (534)
                      +..+++|||.|++.|+.+.++++++.++.     .++..+..|.||||+|+..|+.+++++|++.+  ...+.++..|.|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t   75 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKS-----LATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWS   75 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCC
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchh-----hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCCC
Confidence            34455666666666666666666665432     23455555666666666666666666666554  233445555666


Q ss_pred             HHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHH
Q 009452          100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE  179 (534)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  179 (534)
                      |||+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|.++ ...+..|.||||+|+..|+.+
T Consensus        76 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~  153 (231)
T 3aji_A           76 PLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLK  153 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHH
Confidence            66666666666666666665554432 2555556666666666666666665555554 334455555555555555555


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHH
Q 009452          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATR  242 (534)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~  242 (534)
                      ++++|++.+.++... |..|+||||+|+..|+.+++++|++ .+.+++.+|..|.||||+|+.
T Consensus       154 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          154 MVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCH
T ss_pred             HHHHHHhcCCCcccc-CCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHh
Confidence            555555555554332 4555555555555555555555555 234444444444444444443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=296.03  Aligned_cols=227  Identities=19%  Similarity=0.203  Sum_probs=202.8

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      ..|..|.||||+|+..|+.++|++|++.+.+      ++.+|..|.||||+|+..|+.+++++|++.+  .+.+.++..|
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g  125 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTADW  125 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSSCCCTTC
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCCCC
Confidence            4678899999999999999999999999876      3567899999999999999999999999986  4566788999


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCc
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH  177 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~  177 (534)
                      .||||+|+..|+.+++++|++.+++...  +..|.||||+|+..|+.+++++|+++|+++ ...|..|.||||+|+..|+
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~  202 (285)
T 3d9h_A          126 HTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQ  202 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc
Confidence            9999999999999999999999887653  456999999999999999999999999987 6678899999999999999


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhc-CCC
Q 009452          178 LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNIN-GVD  256 (534)
Q Consensus       178 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~-g~~  256 (534)
                      .+++++|++.++++.  .|..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+....+.++|+.+ |++
T Consensus       203 ~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          203 RACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVPPESPLAQLFLEREGAS  279 (285)
T ss_dssp             HHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTSHHHHHHHHHC---
T ss_pred             HHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhcCccHHHHHHHHhhccC
Confidence            999999999999877  37899999999999999999999999 67889999999999999999877777777665 766


Q ss_pred             hH
Q 009452          257 KA  258 (534)
Q Consensus       257 ~~  258 (534)
                      +.
T Consensus       280 l~  281 (285)
T 3d9h_A          280 LP  281 (285)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.7e-36  Score=285.09  Aligned_cols=226  Identities=27%  Similarity=0.303  Sum_probs=207.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009452           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (534)
                      +..++||||.|+..|+.+.+++|++.+. ...+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A   80 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIA   80 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCG-GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhch-hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC-cCCCCCCHHHHH
Confidence            3568899999999999999999999763 34567789999999999999999999999999887654 488999999999


Q ss_pred             HhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q 009452          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL  218 (534)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  218 (534)
                      +..|+.+++++|+++|+++ ...+..|.||||+|+..|+.+++++|++++.++.. .|..|.||||.|+..|+.+++++|
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999987 66788999999999999999999999999988765 488999999999999999999999


Q ss_pred             hhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCC
Q 009452          219 VKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  289 (534)
Q Consensus       219 l~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~  289 (534)
                      ++ .+.+++.+|..|+||||+|+..++.  .++|+..|++++..|..|.||+++|...++.+++++|.++|++
T Consensus       159 l~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          159 LF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             Hh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            99 6778999999999999999999986  6889999999999999999999999999999999999998875

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.8e-36  Score=284.97  Aligned_cols=214  Identities=25%  Similarity=0.336  Sum_probs=145.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc-cccCCCcHH
Q 009452           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI-KARNGYDAF  101 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~-~~~~g~t~L  101 (534)
                      |+||||.|++.|+.++++.|++.+++.     ....+..|.||||+|+..|+.+++++|++.+....... .+..|.|||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L   76 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF   76 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc-----cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHH
Confidence            567777777777777777777776432     23456677777777777777777777777764444444 566777777


Q ss_pred             HHHHHCCCHHHHHHHHhhC--ccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHH
Q 009452          102 HIAAKQGCLEVLKILMEAL--PELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE  179 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  179 (534)
                      |+|+..|+.+++++|++++  ++. ...|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|+.+
T Consensus        77 ~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           77 HIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             HHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHH
Confidence            7777777777777777766  333 334667777777777777777777777777665 455666777777777777777


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHc
Q 009452          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK  243 (534)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~  243 (534)
                      ++++|++.++......|..|+||||+|+..|+.+++++|++..+.+++.+|.+|.||||+|+..
T Consensus       155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            7777777773333344667777777777777777777777335566677777777777776543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.4e-36  Score=285.78  Aligned_cols=220  Identities=24%  Similarity=0.311  Sum_probs=194.6

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHH----hcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMIS----SYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI   92 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~   92 (534)
                      ..+|.+|.||||+|++.|+.+++++|++    .+.+      ++..|..|.||||+|+..|+.+++++|++.+.  ..+.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~   74 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA--SPMA   74 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC------CCcccccCCCHHHHHHHcCCHHHHHHHHHcCC--Cccc
Confidence            4578999999999999999999999997    3433      45668899999999999999999999999874  4566


Q ss_pred             cccCCCcHHHHHHHCCCHHHHHHHHhhCcc---ccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHH
Q 009452           93 KARNGYDAFHIAAKQGCLEVLKILMEALPE---LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTAL  169 (534)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  169 (534)
                      .+..|.||||+|+..|+.+++++|++.++.   .....|..|.||||+|+..|+.+++++|+++|+++....+..|.|||
T Consensus        75 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L  154 (241)
T 1k1a_A           75 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL  154 (241)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH
Confidence            788999999999999999999999999872   33455889999999999999999999999999998544337899999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH
Q 009452          170 HSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (534)
Q Consensus       170 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~  246 (534)
                      |+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..++.
T Consensus       155 ~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~  229 (241)
T 1k1a_A          155 IHAVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVI  229 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcH
Confidence            9999999999999999999987654 8999999999999999999999999 6778999999999999999988875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.7e-37  Score=297.53  Aligned_cols=242  Identities=22%  Similarity=0.289  Sum_probs=171.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCChh--HHHHHHhcCCCCCcHHHHHHHcCCHH-HHHHHHHhCCccccccccc
Q 009452           19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDME--LREMLSKMNQSGETALYVAAEYGYVD-MVREMIRYHDTSLAGIKAR   95 (534)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~l~~~n~~g~T~Lh~Aa~~g~~~-iv~~Ll~~~~~~~~~~~~~   95 (534)
                      .|.++.++|+.|++.|+.++|++|++.+.+..  ....++..+..|.||||.|+..++.+ +++.|++.|  .+++.+|.
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d~   84 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTSQ   84 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC--CCTTCCCT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcCC
Confidence            46667899999999999999999999876431  12235667788999999999888764 788899877  45677889


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHc
Q 009452           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN  175 (534)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  175 (534)
                      +|+||||+|+..|+.+++++|++.+++... .+..|.||+|+|+..++.+++++|++.|+++ +..|..|.||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCc-cCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence            999999999999999999999999887654 4889999999999999999999999999987 66788999999999999


Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhcCC
Q 009452          176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGV  255 (534)
Q Consensus       176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~  255 (534)
                      |+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|++++++..+|...+.
T Consensus       163 g~~~~v~~Ll~~gadvn~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~  240 (269)
T 4b93_B          163 GHHELVALLLQHGASINAS-NNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS  240 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---
T ss_pred             CCHHHHHHHHHCCCCCCcc-ccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHH
Confidence            9999999999999987654 8899999999999999999999998 6778999999999999999988887666655444


Q ss_pred             ChHhhhccCCc
Q 009452          256 DKAVINKSRET  266 (534)
Q Consensus       256 ~~~~~n~~g~T  266 (534)
                      ..+..|..+.|
T Consensus       241 ~~~~~~~~~~t  251 (269)
T 4b93_B          241 CVASLDDVAET  251 (269)
T ss_dssp             -----------
T ss_pred             hchhhhhccCC
Confidence            44444444433

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.4e-36  Score=305.07  Aligned_cols=229  Identities=24%  Similarity=0.265  Sum_probs=205.5

Q ss_pred             HhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHH
Q 009452           56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTAL  135 (534)
Q Consensus        56 ~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  135 (534)
                      ...|..|.||||+||..|+.++|++|++.+  .+.+..+..|.||||+|+..|+.+++++|++.+++..   +.+|.|||
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L   88 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPI   88 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHH
Confidence            445778999999999999999999999987  4567789999999999999999999999999998432   45899999


Q ss_pred             HHHHhcCCHHHHHHHHhc----CCCchh----------------hhhcCCCcHHHHHHHcC--cHHHHHHHHhcCCCCcc
Q 009452          136 HTASSQGHVEVVKFLLEK----GSTLAT----------------IARSNGKTALHSAARNG--HLEIVKALLSKEPGIVL  193 (534)
Q Consensus       136 h~A~~~g~~~~v~~Ll~~----~~~~~~----------------~~~~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~  193 (534)
                      |+|+..|+.+++++|++.    +.++..                ..+..|.||||+|+..|  +.+++++|++.+.++..
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~  168 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA  168 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc
Confidence            999999999999999999    777632                16778999999999999  99999999999998765


Q ss_pred             cCCCCCCcHHHHHHhCCCHHHHHHHhhcCCc----cccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcH
Q 009452          194 RNDKKGQTALHMAVKGQSIELVDELVKVEPV----IINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETA  267 (534)
Q Consensus       194 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~----~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~  267 (534)
                      . |..|.||||+|+..|+.+++++|++....    +++.+|..|+||||+|+..|+.  .++|+..|++++..|..|.||
T Consensus       169 ~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp  247 (364)
T 3ljn_A          169 K-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP  247 (364)
T ss_dssp             C-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             c-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            4 89999999999999999999999994332    2899999999999999999986  689999999999999999999


Q ss_pred             HHHHHhcCchhHHHHHHhcCCCC
Q 009452          268 LDTAEKTGHSEIGVILKEHGVPC  290 (534)
Q Consensus       268 l~~A~~~~~~~i~~~L~~~g~~~  290 (534)
                      |++|+..|+.+++++|+++|++.
T Consensus       248 L~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          248 LYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             HHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             HHHHHHhChHHHHHHHHHcCCch
Confidence            99999999999999999998753

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.3e-35  Score=279.60  Aligned_cols=218  Identities=24%  Similarity=0.274  Sum_probs=194.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhC--ccccccCCCCCCcHHHHHH
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEAL--PELLMTFDSSNTTALHTAS  139 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~  139 (534)
                      |+||||+|+..|+.+++++|++.+.. .....+..|.||||+|+..|+.+++++|++.+  ++.....|..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcc-ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            78999999999999999999998743 34457889999999999999999999999998  6655546899999999999


Q ss_pred             hcCCHHHHHHHHhcC--CCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHH
Q 009452          140 SQGHVEVVKFLLEKG--STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE  217 (534)
Q Consensus       140 ~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~  217 (534)
                      ..|+.+++++|+++|  +++ ...+..|.||||.|+..|+.+++++|++++.++... |..|.||||+|+..|+.+++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999998  665 567888999999999999999999999999887654 8899999999999999999999


Q ss_pred             HhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhh-hcCCChHhhhccCCcHHHHHHhcCchhHHHHHHh
Q 009452          218 LVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLN-INGVDKAVINKSRETALDTAEKTGHSEIGVILKE  285 (534)
Q Consensus       218 Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~-~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~  285 (534)
                      |++.++.+++.+|..|+||||+|+..++.  .++|+ ..|++++..|..|.||+++|...   ++.++|++
T Consensus       159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            99966688999999999999999999986  56666 89999999999999999999754   56666654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=8.4e-35  Score=277.31  Aligned_cols=229  Identities=24%  Similarity=0.279  Sum_probs=199.9

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHH
Q 009452           57 KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALH  136 (534)
Q Consensus        57 ~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  136 (534)
                      ..|..|.||||.|+..|+.+++++|++.+  .+.+..+..|.||||+|+..|+.+++++|++.+++.....+..|.||||
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            45778899999999999999999999977  4456678889999999999999999999999998887776777999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCC-HHHH
Q 009452          137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS-IELV  215 (534)
Q Consensus       137 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~iv  215 (534)
                      +|+..|+.+++++|++.|+++ ...+..|.||||.|+..|+.+++++|+++++++.. .+..|.||||.|+..++ .+++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-MDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHCCSSTTH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc-cCCCCCcHHHHHHHhCChHHHH
Confidence            999999999999999999887 56788899999999999999999999999888664 47899999999996655 7888


Q ss_pred             HHHhhcCCccccccCC-CCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCC
Q 009452          216 DELVKVEPVIINMVDA-KGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  290 (534)
Q Consensus       216 ~~Ll~~~~~~in~~d~-~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~  290 (534)
                      ++|++ .+.+++..+. .|+||||+|+..++.  .++|+..|++++..|..|.||+++|+..|+.+++++|+++|+..
T Consensus       160 ~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          160 RLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            88888 6667888886 899999999999986  68888899999999999999999999999999999999988764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.5e-34  Score=287.69  Aligned_cols=229  Identities=23%  Similarity=0.334  Sum_probs=192.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccc-cCCCcHHHHHHHCCCHHHHHHHHhhCcccc-------------
Q 009452           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA-RNGYDAFHIAAKQGCLEVLKILMEALPELL-------------  124 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~-------------  124 (534)
                      +.+|+||||.|++.|+.++|++||+.|.+  ++.++ ..|+||||+|+..|+.+++++|++++++..             
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad--vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            34578999999999999999999999844  45455 459999999999999999999999876532             


Q ss_pred             -------------------ccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchh---------hhhcCCCcHHHHHHHcC
Q 009452          125 -------------------MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT---------IARSNGKTALHSAARNG  176 (534)
Q Consensus       125 -------------------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~---------~~~~~g~tpLh~A~~~g  176 (534)
                                         +..|..|.||||+|+..|+.+++++|+++|+++..         ..+..|.||||+|+..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                               33478899999999999999999999999887632         23456899999999999


Q ss_pred             cHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHhCCC----HHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH---HH
Q 009452          177 HLEIVKALLSK-EPGIVLRNDKKGQTALHMAVKGQS----IELVDELVKVEPVIINMVDAKGNSALHIATRKGRV---QK  248 (534)
Q Consensus       177 ~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~---~~  248 (534)
                      +.+++++|+++ +.+++ ..|..|.|++|.++..+.    ..++++|++ .+.++|.+|.+|+||||+|+..++.   ..
T Consensus       180 ~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~~v~~  257 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQR  257 (337)
T ss_dssp             CHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence            99999999965 66654 458899999998775433    457788887 6778999999999999999999986   34


Q ss_pred             HhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCC
Q 009452          249 LLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCG  291 (534)
Q Consensus       249 ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~  291 (534)
                      |+...|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          258 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             HHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             HHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            4445799999999999999999999999999999999999864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=289.09  Aligned_cols=227  Identities=25%  Similarity=0.332  Sum_probs=171.0

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcc------cccccccCCCcHHHHHHHCCCHH-HHHHHHhhCccccccCCC
Q 009452           57 KMNQSGETALYVAAEYGYVDMVREMIRYHDTS------LAGIKARNGYDAFHIAAKQGCLE-VLKILMEALPELLMTFDS  129 (534)
Q Consensus        57 ~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~------~~~~~~~~g~t~Lh~Aa~~g~~~-iv~~Ll~~~~~~~~~~d~  129 (534)
                      ++|..+.+||+.||..|+.++|++|++.+...      ..+..+..|.||||.|+..++.+ +++.|++.+.+++. .|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~-~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV-TSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTC-CCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC-cCC
Confidence            45667789999999999999999999977532      23456778999999999888764 78999999888654 599


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhC
Q 009452          130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG  209 (534)
Q Consensus       130 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  209 (534)
                      +|+||||+|+..|+.+++++|++.++++ ...+.+|.||+|.|+..++.+++++|++.+++++.. |..|+||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~-d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK-DLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHC
Confidence            9999999999999999999999999987 667889999999999999999999999999987654 89999999999999


Q ss_pred             CCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCc-hhHHHHHHhc
Q 009452          210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGH-SEIGVILKEH  286 (534)
Q Consensus       210 ~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~-~~i~~~L~~~  286 (534)
                      |+.+++++|++ .+.++|.+|..|+||||+|+..|+.  .++|+..|+|++.+|..|+|||++|++.++ .++++.|...
T Consensus       163 g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~  241 (269)
T 4b93_B          163 GHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC  241 (269)
T ss_dssp             TCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC----
T ss_pred             CCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHh
Confidence            99999999999 6778999999999999999999986  688999999999999999999999987765 2344444443


Q ss_pred             C
Q 009452          287 G  287 (534)
Q Consensus       287 g  287 (534)
                      +
T Consensus       242 ~  242 (269)
T 4b93_B          242 V  242 (269)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.9e-35  Score=286.35  Aligned_cols=240  Identities=20%  Similarity=0.183  Sum_probs=209.8

Q ss_pred             HHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCH
Q 009452           31 VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCL  110 (534)
Q Consensus        31 ~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~  110 (534)
                      ++..+.+.+..++..+.       ++.+|..|.||||+|+..|+.+++++|++.+..  .+..  +|.||||+|+..|+.
T Consensus         7 i~~~~~~~v~~lL~~~~-------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~--~g~t~L~~A~~~g~~   75 (285)
T 3kea_A            7 INTWKSKQLKSFLSSKD-------TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL--KNLL--ENEFPLHQAATLEDT   75 (285)
T ss_dssp             GGGCCHHHHHHHHHSTT-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG--GSCC--TTCCHHHHHTTSSSC
T ss_pred             HHhcCHHHHHHHHHhCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CCCC--CCCCHHHHHHHcCCH
Confidence            45667777777776642       467789999999999999999999999998743  3333  599999999999999


Q ss_pred             HHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCC-CcHHHHHHHcCcHHHHHHHHhcCC
Q 009452          111 EVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG-KTALHSAARNGHLEIVKALLSKEP  189 (534)
Q Consensus       111 ~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpLh~A~~~g~~~iv~~Ll~~~~  189 (534)
                      +++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|+++ ...+..| .||||+|+..|+.+++++|+++++
T Consensus        76 ~~v~~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~  153 (285)
T 3kea_A           76 KIVKILLFSGLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP  153 (285)
T ss_dssp             HHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHHHHHCCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            999999999988654 5899999999999999999999999999997 5677788 799999999999999999999998


Q ss_pred             CCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcH-HHHHHHcCcH--HHHhhhcCCChHhhhccCCc
Q 009452          190 GIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA-LHIATRKGRV--QKLLNINGVDKAVINKSRET  266 (534)
Q Consensus       190 ~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~-Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T  266 (534)
                      +....  ..|.||||+|+..|+.+++++|++ .+.+++.+|..|+|| ||+|+..++.  .++|+.+|++++..|.    
T Consensus       154 ~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~----  226 (285)
T 3kea_A          154 STFDL--AILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL----  226 (285)
T ss_dssp             TTCCC--STHHHHHHHHHHTTCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG----
T ss_pred             ccccc--cCCccHHHHHHHcChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh----
Confidence            76322  389999999999999999999999 477899999999998 9999999986  6899999999999984    


Q ss_pred             HHHHHHhcCchhHHHHHHhcCCCCCCC
Q 009452          267 ALDTAEKTGHSEIGVILKEHGVPCGKS  293 (534)
Q Consensus       267 ~l~~A~~~~~~~i~~~L~~~g~~~~~~  293 (534)
                         .|+..|+.+++++|+++|++....
T Consensus       227 ---~a~~~~~~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          227 ---ENVLLDDAEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             ---GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred             ---hhhhcCCHHHHHHHHHcCCCCCCc
Confidence               456789999999999999876543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-34  Score=295.70  Aligned_cols=230  Identities=22%  Similarity=0.295  Sum_probs=199.8

Q ss_pred             cCC-CCCCcHHHHHHHcCCHHHHHHHH--------HhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcc
Q 009452           18 LTA-KRDDTPLQSLVRTGSVELVLDMI--------SSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTS   88 (534)
Q Consensus        18 ~~~-~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~   88 (534)
                      ..| ..|.||||+|+..|+.+++++|+        +.|.+      ++.+|..|.||||+|+..|+.++|++|++.+.  
T Consensus       119 ~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga--  190 (373)
T 2fo1_E          119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGA--  190 (373)
T ss_dssp             TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred             ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC------CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCC--
Confidence            445 78999999999999998888877        56654      35678999999999999999999999999874  


Q ss_pred             cccccccCCCcHHHHHHHCCCHHHHHHHHhhCc--cccccCCCCCCcHHHHHHhcC---CHHHHHHHHhcCCCchh----
Q 009452           89 LAGIKARNGYDAFHIAAKQGCLEVLKILMEALP--ELLMTFDSSNTTALHTASSQG---HVEVVKFLLEKGSTLAT----  159 (534)
Q Consensus        89 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~--~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~----  159 (534)
                      +.+..+..|.||||+|+..|+.+++++|++.+.  ...+..|..|.||||+|+..|   +.+++++|+++|+++..    
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  270 (373)
T 2fo1_E          191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  270 (373)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc
Confidence            456788999999999999999999999999763  234455899999999999998   89999999999988743    


Q ss_pred             ---hhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcH
Q 009452          160 ---IARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA  236 (534)
Q Consensus       160 ---~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~  236 (534)
                         ..+..|.||||+|+..|+.+++++|+++++......|..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||
T Consensus       271 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~  349 (373)
T 2fo1_E          271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTA  349 (373)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCH
T ss_pred             ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCH
Confidence               2466899999999999999999999998744445568999999999999999999999999 678899999999999


Q ss_pred             HHHHHHcCcH--HHHhhhcCCC
Q 009452          237 LHIATRKGRV--QKLLNINGVD  256 (534)
Q Consensus       237 Lh~Aa~~~~~--~~ll~~~g~~  256 (534)
                      ||+|+..|+.  .++|+.++.+
T Consensus       350 l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          350 RQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999986  6788877765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-34  Score=286.85  Aligned_cols=246  Identities=24%  Similarity=0.282  Sum_probs=206.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcH
Q 009452           21 KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDA  100 (534)
Q Consensus        21 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~  100 (534)
                      ..|.||||.|+..|+.++|++|++.+.+      ++..|..|.||||+|+..|+.+++++|++.+  .+.+..+..|.||
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tp  109 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIP  109 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcH
Confidence            3567999999999999999999999876      3567889999999999999999999999987  4566788899999


Q ss_pred             HHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCchhhhhcCCCcHHHHHHHcCcHH
Q 009452          101 FHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAARNGHLE  179 (534)
Q Consensus       101 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpLh~A~~~g~~~  179 (534)
                      ||+|+..|+.+++++|++++++... .|..|.||||+|+..|+.++++.++.. +.++ ...+..+.++++        .
T Consensus       110 L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~~--------~  179 (299)
T 1s70_B          110 LHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI-EAARKEEERIML--------R  179 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHH--------H
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCc-hhhhhhhhhHHH--------H
Confidence            9999999999999999999887654 489999999999999999999998876 4443 333333333333        3


Q ss_pred             HHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCCh
Q 009452          180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDK  257 (534)
Q Consensus       180 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~  257 (534)
                      .+..++..+.......+..|.||||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.  .++|+..|+++
T Consensus       180 ~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~  258 (299)
T 1s70_B          180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM  258 (299)
T ss_dssp             HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Confidence            45566777776666678899999999999999999999998 6778999999999999999999986  68899999999


Q ss_pred             HhhhccCCcHHHHHHhcCchhHHHHHHh
Q 009452          258 AVINKSRETALDTAEKTGHSEIGVILKE  285 (534)
Q Consensus       258 ~~~n~~g~T~l~~A~~~~~~~i~~~L~~  285 (534)
                      +.+|..|+||+++|.......+.+++.+
T Consensus       259 ~~~d~~g~t~l~~A~~~~~~~l~~l~~~  286 (299)
T 1s70_B          259 EAVNKVGQTAFDVADEDILGYLEELQKK  286 (299)
T ss_dssp             TCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999976444344343333

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.5e-34  Score=280.28  Aligned_cols=238  Identities=19%  Similarity=0.197  Sum_probs=185.5

Q ss_pred             HhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcc-cccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcH
Q 009452           56 SKMNQSGETALYVAAEYGYVDMVREMIRYHDTS-LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTA  134 (534)
Q Consensus        56 ~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  134 (534)
                      +.+|..|.||||+|+..|+.++|++|++.+... ..+.++..|.||||+|+..|+.+++++|+++++++.. .|..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tp   81 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTA   81 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCCH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCH
Confidence            456899999999999999999999999987542 2677889999999999999999999999999988654 48899999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCchh------------hhhcCCCcHHHHHHHcCcHHHHHHHHh-cCCCCcccCCCCCCc
Q 009452          135 LHTASSQGHVEVVKFLLEKGSTLAT------------IARSNGKTALHSAARNGHLEIVKALLS-KEPGIVLRNDKKGQT  201 (534)
Q Consensus       135 Lh~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t  201 (534)
                      ||+|+..|+.+++++|++++++...            .....+.++++.++..+.......++. .+.+ ....|..|.|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t  160 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHT  160 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG-TTCCCTTSCC
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCcC
Confidence            9999999999999999999876321            122346677777776655444433333 3333 3345889999


Q ss_pred             HHHHHHhCCCHHHHHHHhhcCCccccccCCC-CCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchh
Q 009452          202 ALHMAVKGQSIELVDELVKVEPVIINMVDAK-GNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSE  278 (534)
Q Consensus       202 ~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~-G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~  278 (534)
                      |||+|+..|+.+++++|++ .+.+++.++.. |+||||+|+..++.  .++|+..|++++.+|..|.|||++|+..|+.+
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcH
Confidence            9999999999999999999 56678888854 99999999999986  68899999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCC
Q 009452          279 IGVILKEHGVPCGKSIKP  296 (534)
Q Consensus       279 i~~~L~~~g~~~~~~~~~  296 (534)
                      ++++|+++|+++......
T Consensus       240 ~v~~Ll~~ga~~~~~~~~  257 (282)
T 1oy3_D          240 LARLLRAHGAPEPEDGGD  257 (282)
T ss_dssp             HHHHHHHTTCCCCCCC--
T ss_pred             HHHHHHHcCCCcCcCCCc
Confidence            999999999998755443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=268.57  Aligned_cols=232  Identities=22%  Similarity=0.279  Sum_probs=202.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      ..|..|.|+||.|++.|+.+++++|++.+.+.      +..+..|.||||+|+..|+.+++++|++.+... ....+..|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~   76 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDV------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIV-DQLGGDLN   76 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTT
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCc------CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc-hhhcCCcC
Confidence            35778999999999999999999999998763      566889999999999999999999999987533 23445669


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCc
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH  177 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~  177 (534)
                      .||||+|+..|+.+++++|++.+++... .|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||.|+..++
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCC
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCC
Confidence            9999999999999999999999887654 4889999999999999999999999999987 6678899999999997666


Q ss_pred             -HHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcC
Q 009452          178 -LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNING  254 (534)
Q Consensus       178 -~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g  254 (534)
                       .+++++|++.+.++....+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..++.  .++|++.+
T Consensus       155 ~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence             89999999999998876445899999999999999999999995 678999999999999999999986  67888877


Q ss_pred             CChHh
Q 009452          255 VDKAV  259 (534)
Q Consensus       255 ~~~~~  259 (534)
                      .+...
T Consensus       234 ~~~~~  238 (240)
T 3eu9_A          234 QAKGY  238 (240)
T ss_dssp             -----
T ss_pred             hccCc
Confidence            66543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=8.5e-34  Score=267.94  Aligned_cols=216  Identities=22%  Similarity=0.264  Sum_probs=177.3

Q ss_pred             CCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHh
Q 009452           73 GYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE  152 (534)
Q Consensus        73 g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  152 (534)
                      |+.+++++|++.+... ....+..|.||||+|+..|+.+++++|++++++... .|..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCc-ccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            5677788888776432 233477888888888888888888888888776544 47888888888888888888888888


Q ss_pred             cCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCC
Q 009452          153 KGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK  232 (534)
Q Consensus       153 ~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~  232 (534)
                      +++......+..|.||||+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++ .+.+++.+|..
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~  157 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNR  157 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCC
Confidence            887555667788889999999888899999998888876544 7888899999999999999999988 46778888899


Q ss_pred             CCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCC
Q 009452          233 GNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK  292 (534)
Q Consensus       233 G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~  292 (534)
                      |+||||+|+..++.  .++|+..|++++..|..|.||+++|+..++.+++++|+++|+....
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence            99999999988875  6788888999999999999999999999999999999999987543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3e-33  Score=264.17  Aligned_cols=213  Identities=21%  Similarity=0.253  Sum_probs=161.2

Q ss_pred             CCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHH
Q 009452           34 GSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVL  113 (534)
Q Consensus        34 g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv  113 (534)
                      |+.+++++|++.+.+.+     ...+..|.||||+|+..|+.+++++|++.+  .+.+..+..|.||||+|+..|+.+++
T Consensus         2 g~~~~i~~Ll~~g~~~~-----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLH-----NQTDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ---CCEETTEETTCCTT-----CCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHcCCCcc-----cccCCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            56677777777776431     334677888888888888888888888876  34555677788888888888888888


Q ss_pred             HHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcc
Q 009452          114 KILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVL  193 (534)
Q Consensus       114 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~  193 (534)
                      ++|++.++......+..|.||||+|+..|+.+++++|+++++++ ...+..|.||||+|+..|+.+++++|+++++++..
T Consensus        75 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (223)
T 2f8y_A           75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM  153 (223)
T ss_dssp             HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            88888777555566778888888888888888888888888776 55677788888888888888888888888777654


Q ss_pred             cCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCC
Q 009452          194 RNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVD  256 (534)
Q Consensus       194 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~  256 (534)
                      . |..|.||||+|+..|+.+++++|++ .+.+++.+|..|.||||+|+..++.  .++|+++|+.
T Consensus       154 ~-~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          154 Q-NNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             C-CTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             c-CCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            3 7788888888888888888888887 4566788888888888888888775  5777777765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.3e-32  Score=270.52  Aligned_cols=223  Identities=15%  Similarity=0.146  Sum_probs=194.1

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      +..|..|.||||+|++.|+.++|++|++.+.+.+      .  .+|.||||+|+..|+.+++++|++.+.  +.+.++..
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga--~~~~~d~~   94 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKN------L--LENEFPLHQAATLEDTKIVKILLFSGL--DDSQFDDK   94 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS------C--CTTCCHHHHHTTSSSCHHHHHHHHTTC--CTTCCCTT
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------C--CCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCC
Confidence            5677899999999999999999999999986542      2  259999999999999999999999874  45668889


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCC-CcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHc
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN-TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN  175 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  175 (534)
                      |.||||+|+..|+.+++++|+++++++... |..| .||||+|+..|+.+++++|+++|++...  ...|.||||+|+..
T Consensus        95 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~  171 (285)
T 3kea_A           95 GNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKN  171 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHc
Confidence            999999999999999999999999887654 8888 8999999999999999999999987622  12789999999999


Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCCcH-HHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhh
Q 009452          176 GHLEIVKALLSKEPGIVLRNDKKGQTA-LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNI  252 (534)
Q Consensus       176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~  252 (534)
                      |+.+++++|+++|+++.. .|..|+|| ||+|+..|+.+++++|++ .+.+++.+|.       .|+..++.  .++|++
T Consensus       172 g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-------~a~~~~~~~iv~~Ll~  242 (285)
T 3kea_A          172 GHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL-------ENVLLDDAEIAKMIIE  242 (285)
T ss_dssp             TCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG-------GGGTTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh-------hhhhcCCHHHHHHHHH
Confidence            999999999999988765 48899998 999999999999999999 5777888873       45666765  789999


Q ss_pred             cCCChHhhh
Q 009452          253 NGVDKAVIN  261 (534)
Q Consensus       253 ~g~~~~~~n  261 (534)
                      +|++++...
T Consensus       243 ~g~~~~~~~  251 (285)
T 3kea_A          243 KHVEYKSDS  251 (285)
T ss_dssp             HHHHHTTCT
T ss_pred             cCCCCCCcc
Confidence            998765443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=8.6e-32  Score=255.88  Aligned_cols=194  Identities=21%  Similarity=0.253  Sum_probs=156.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh-cCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccc---ccccccCC
Q 009452           22 RDDTPLQSLVRTGSVELVLDMISS-YGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSL---AGIKARNG   97 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~---~~~~~~~g   97 (534)
                      .|.||||.|++.|+.+++++|++. +.+      ++.+|..|.||||+|+..|+.+++++|++.+....   ....+..|
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g   75 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEG   75 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCC
Confidence            588999999999999999999987 544      35668889999999999999999999998874421   14456788


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccccccC------------CCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCC
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPELLMTF------------DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG  165 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~------------d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  165 (534)
                      .||||+|+..|+.+++++|++++++.....            |..|.||||+|+..|+.+++++|+++|+++ +..|..|
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g  154 (232)
T 2rfa_A           76 QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLG  154 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             cCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCC
Confidence            999999999999999999999887764431            236888888888888888888888888887 5678888


Q ss_pred             CcHHHHHHHcCcHHHH----HHHHhcCCCCc-----ccCCCCCCcHHHHHHhCCCHHHHHHHhhcC
Q 009452          166 KTALHSAARNGHLEIV----KALLSKEPGIV-----LRNDKKGQTALHMAVKGQSIELVDELVKVE  222 (534)
Q Consensus       166 ~tpLh~A~~~g~~~iv----~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  222 (534)
                      .||||+|+..|+.+++    ++|++.+++..     ...|..|+||||+|++.|+.+++++|++.+
T Consensus       155 ~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            8888888888888877    88888887664     456788888888888888888888888743

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=1.5e-33  Score=268.97  Aligned_cols=218  Identities=19%  Similarity=0.261  Sum_probs=124.2

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccC
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN   96 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   96 (534)
                      +..|.+|.||||+|+..|+.++++.|++.+....  ..++..+..|.||||+|+..|+.+++++|++.+  ...+.++..
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~   77 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL--AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFR   77 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----C--CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTT
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccH--HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCC
Confidence            4456666666666666666666666666553210  124555566666666666666666666666654  334445666


Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCcc-----ccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhc-CCCcHHH
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPE-----LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARS-NGKTALH  170 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpLh  170 (534)
                      |.||||+|+..|+.+++++|++.++.     .....|..|.||||+|+..|+.+++++|+++|+++ ...+. .|.||||
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~  156 (236)
T 1ikn_D           78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALH  156 (236)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHH
Confidence            66666666666666666666665542     23344556666666666666666666666666665 23333 5666666


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCcc-ccccCCCCCcHHHHH
Q 009452          171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI-INMVDAKGNSALHIA  240 (534)
Q Consensus       171 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~-in~~d~~G~T~Lh~A  240 (534)
                      +|+..|+.+++++|+++|+++... |..|.||||+|+..|+.+++++|++.+... ...++..|.|+.+.+
T Consensus       157 ~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          157 LAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCSCCC-CTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcc-cCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence            666666666666666666655433 566666666666666666666666633221 124555555554433

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=1.4e-31  Score=248.36  Aligned_cols=192  Identities=24%  Similarity=0.282  Sum_probs=145.4

Q ss_pred             cCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHH
Q 009452           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (534)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~  174 (534)
                      ..+.||||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            346677777777777777777777766445555777777777777777777777777777776 4566777778888887


Q ss_pred             cCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCc-----H--H
Q 009452          175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR-----V--Q  247 (534)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~-----~--~  247 (534)
                      .|+.+++++|++.+.......|..|.||||.|+..|+.+++++|++.++.+++.+|..|+||||+|+..++     .  .
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            78888888777555444445577788888888888888888888876657778888888888888887765     2  5


Q ss_pred             HHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcC
Q 009452          248 KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  287 (534)
Q Consensus       248 ~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g  287 (534)
                      ++|++.|++++..|..|.||+++|+..|+.+++++|+++|
T Consensus       162 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            7777888888888888888888888888888888888876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=4.2e-33  Score=265.89  Aligned_cols=215  Identities=25%  Similarity=0.276  Sum_probs=186.3

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc--ccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcH
Q 009452           57 KMNQSGETALYVAAEYGYVDMVREMIRYHDT--SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTA  134 (534)
Q Consensus        57 ~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  134 (534)
                      .+|.+|.||||+|+..|+.+++++|++.+..  ...+..+..|.||||+|+..|+.+++++|+++++++.. .|..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCH
Confidence            4578999999999999999999999987643  25677889999999999999999999999999887654 48999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCc-----hhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhC
Q 009452          135 LHTASSQGHVEVVKFLLEKGSTL-----ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG  209 (534)
Q Consensus       135 Lh~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  209 (534)
                      ||+|+..|+.+++++|++.+++.     ....+..|.||||+|+..|+.+++++|+++++++....+..|.||||+|+..
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            99999999999999999998652     3556788999999999999999999999999998766333999999999999


Q ss_pred             CCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChH--hhhccCCcHHHHHHh
Q 009452          210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKA--VINKSRETALDTAEK  273 (534)
Q Consensus       210 ~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~--~~n~~g~T~l~~A~~  273 (534)
                      |+.+++++|++ .+.+++.+|..|.||||+|+..++.  .++|+.+|++..  ..+..|.|+.+.+..
T Consensus       162 ~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          162 QNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             TCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             CCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            99999999999 5788999999999999999999986  689999999877  788999999886654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=1.2e-31  Score=254.79  Aligned_cols=206  Identities=26%  Similarity=0.251  Sum_probs=151.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCcccc----ccCCCCCCcHHH
Q 009452           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELL----MTFDSSNTTALH  136 (534)
Q Consensus        61 ~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~----~~~d~~g~tpLh  136 (534)
                      .|+||||+|+..|+.+++++|++.. +.+.+.++..|.||||+|+..|+.+++++|++.+++..    ...|..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            5788999999999999999888862 24566678888899999999999999999998887753    334667888888


Q ss_pred             HHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHH
Q 009452          137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVD  216 (534)
Q Consensus       137 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~  216 (534)
                      +|+..|+.+++++|+++|+++.. .+..  +.++.                   .....|..|.||||+|+..|+.++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~-~~~~--~~~~~-------------------~~~~~~~~g~t~L~~A~~~~~~~~v~  138 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSA-RATG--SVFHY-------------------RPHNLIYYGEHPLSFAACVGSEEIVR  138 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-CCCS--GGGSC-------------------CTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCc-ccCC--cceee-------------------cccccccCCCCHHHHHHHcCCHHHHH
Confidence            88888888888888888877632 2221  11100                   01123456777777777777777777


Q ss_pred             HHhhcCCccccccCCCCCcHHHHHHHcCcH--H----HHhhhcCCCh------HhhhccCCcHHHHHHhcCchhHHHHHH
Q 009452          217 ELVKVEPVIINMVDAKGNSALHIATRKGRV--Q----KLLNINGVDK------AVINKSRETALDTAEKTGHSEIGVILK  284 (534)
Q Consensus       217 ~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~----~ll~~~g~~~------~~~n~~g~T~l~~A~~~~~~~i~~~L~  284 (534)
                      +|++ .+.+++.+|.+|+||||+|+..++.  .    ++|+..|++.      +..|..|.|||++|+..|+.+++++|+
T Consensus       139 ~Ll~-~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll  217 (232)
T 2rfa_A          139 LLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM  217 (232)
T ss_dssp             HHHH-TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHH-CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            7776 4566777777777777777777764  2    6677777776      577888888888888889999999999


Q ss_pred             hcCCCC
Q 009452          285 EHGVPC  290 (534)
Q Consensus       285 ~~g~~~  290 (534)
                      ++|...
T Consensus       218 ~~g~~~  223 (232)
T 2rfa_A          218 QKRKHI  223 (232)
T ss_dssp             HHHHHC
T ss_pred             hcCccc
Confidence            888654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.98  E-value=9.2e-33  Score=272.93  Aligned_cols=256  Identities=20%  Similarity=0.207  Sum_probs=206.2

Q ss_pred             HHHHcCCHHHHHHHHHhcCChhHH---HHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHH
Q 009452           29 SLVRTGSVELVLDMISSYGDMELR---EMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAA  105 (534)
Q Consensus        29 ~A~~~g~~~~v~~Ll~~~~~~~~~---~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa  105 (534)
                      .+++.++.+.++.++.........   ......+..|.||||.||..|+.++|++|++.+.  +.+..+..|.||||+|+
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~   81 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA--DINYANVDGLTALHQAC   81 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC--CTTCBCTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHHH
Confidence            467788888888888776432110   0011223467899999999999999999999874  46678889999999999


Q ss_pred             HCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHH
Q 009452          106 KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL  185 (534)
Q Consensus       106 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll  185 (534)
                      ..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|+.++++.++
T Consensus        82 ~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B           82 IDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence            99999999999999887654 4889999999999999999999999999987 667889999999999999999999988


Q ss_pred             hcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhcc
Q 009452          186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKS  263 (534)
Q Consensus       186 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~  263 (534)
                      ..........+..+.++++        ..+..++..........|..|.||||+|+..|+.  .++|+..|++++..|..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~  231 (299)
T 1s70_B          160 NRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD  231 (299)
T ss_dssp             HHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             hhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC
Confidence            7643322221222233332        2344455556666677889999999999999986  68889999999999999


Q ss_pred             CCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCC
Q 009452          264 RETALDTAEKTGHSEIGVILKEHGVPCGKSIKP  296 (534)
Q Consensus       264 g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~  296 (534)
                      |.||||+|+..|+.+++++|+++|+++......
T Consensus       232 g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~  264 (299)
T 1s70_B          232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKV  264 (299)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCC
Confidence            999999999999999999999999987654443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.1e-30  Score=242.54  Aligned_cols=194  Identities=21%  Similarity=0.271  Sum_probs=163.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCc
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (534)
                      +..+.||||.|+..|+.+.++.|++.++.     .++..+..|.||||+|+..|+.+++++|++.+  .+.+..+..|.|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t   74 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTY-----QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG--ADINLQNSISDS   74 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCC
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCC
Confidence            35688999999999999999999988752     14566888999999999999999999999986  445667888999


Q ss_pred             HHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCc--
Q 009452          100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH--  177 (534)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~--  177 (534)
                      |||+|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++++.......+..|.||||+|+..|+  
T Consensus        75 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~  154 (201)
T 3hra_A           75 PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN  154 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCS
T ss_pred             HHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccch
Confidence            999999999999999999766655666688899999999999999999999999833336778889999999998887  


Q ss_pred             ---HHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          178 ---LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       178 ---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                         .+++++|+++++++.. .|..|+||||+|++.|+.+++++|++.
T Consensus       155 ~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          155 QLYQDIVKLLMENGADQSI-KDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence               8999999999888764 478899999999999999999999873

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.9e-32  Score=274.69  Aligned_cols=240  Identities=17%  Similarity=0.120  Sum_probs=164.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHh-----------cCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSK-----------MNQSGETALYVAAEYGYVDMVREMIRYHD   86 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~-----------~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~   86 (534)
                      ..+..|.|+++     |+.++|+.|+++|.+++...+...           ......+.+|+|+..+..++++.|++.+ 
T Consensus        47 ~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g-  120 (327)
T 1sw6_A           47 KALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ-  120 (327)
T ss_dssp             ECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSC-
T ss_pred             cCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcC-
Confidence            35567778876     888888888888765443222111           1111223457777777778888888765 


Q ss_pred             cccccc-cccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC---HHHHHHHHhcCCCchhhhh
Q 009452           87 TSLAGI-KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH---VEVVKFLLEKGSTLATIAR  162 (534)
Q Consensus        87 ~~~~~~-~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~~  162 (534)
                       .+++. ++..|.||||+|+..|+.+++++|+++++++. ..|..|+||||+|+..|+   .++++.|++.+.......|
T Consensus       121 -~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d  198 (327)
T 1sw6_A          121 -LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  198 (327)
T ss_dssp             -CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             -CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCC
Confidence             44555 68888888888888888888888888887765 448888888888888887   6777777777633346677


Q ss_pred             cCCCcHHHHHHH----cCcHHHHHHHHhc--------------------CCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q 009452          163 SNGKTALHSAAR----NGHLEIVKALLSK--------------------EPGIVLRNDKKGQTALHMAVKGQSIELVDEL  218 (534)
Q Consensus       163 ~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  218 (534)
                      ..|.||||+|+.    .|+.+++++|++.                    +.++.. .+..|.||||.|+.      +++|
T Consensus       199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~~~g~t~L~~a~~------~~~L  271 (327)
T 1sw6_A          199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND-KNGERKDSILENLD------LKWI  271 (327)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHH
T ss_pred             CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc-ccccCCChhHHHHH------HHHH
Confidence            888888888888    8888888888876                    445443 47788888888885      7788


Q ss_pred             hhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcC
Q 009452          219 VKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTG  275 (534)
Q Consensus       219 l~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~  275 (534)
                      ++.   ++|.+|.+|+||||+|+..|+.  .++|+.+|++++.+|..|+||||+|+..|
T Consensus       272 l~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          272 IAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            875   4788888888888888888875  67788888888888888888888887653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2.2e-31  Score=259.86  Aligned_cols=219  Identities=17%  Similarity=0.201  Sum_probs=152.3

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCC--hhHHHHHHhcCCCCCcHHHHHHHc---CCHHHHHHHHHhCCcc---
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGD--MELREMLSKMNQSGETALYVAAEY---GYVDMVREMIRYHDTS---   88 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~l~~~n~~g~T~Lh~Aa~~---g~~~iv~~Ll~~~~~~---   88 (534)
                      +..|..|.||||.|++.|+.++|+.|++.+.+  .++.......+..|.||||+|+..   |+.+++++|++.+...   
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            45778899999999999999999888874311  000000113467899999999987   9999999999876321   


Q ss_pred             ------cccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCC--------------CCCcHHHHHHhcCCHHHHH
Q 009452           89 ------LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDS--------------SNTTALHTASSQGHVEVVK  148 (534)
Q Consensus        89 ------~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~~v~  148 (534)
                            .....+..|.||||+|+..|+.+++++|+++++++... +.              .|.||||+|+..|+.++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-ccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence                  11124567888888888888888888888888776544 43              6888888888888888888


Q ss_pred             HHHh---cCCCchhhhhcCCCcHHHHHHHcCc---------HHHHHHHHhcCCCCcc------cCCCCCCcHHHHHHhCC
Q 009452          149 FLLE---KGSTLATIARSNGKTALHSAARNGH---------LEIVKALLSKEPGIVL------RNDKKGQTALHMAVKGQ  210 (534)
Q Consensus       149 ~Ll~---~~~~~~~~~~~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~~------~~d~~g~t~Lh~A~~~~  210 (534)
                      +|++   .|+++ +..|.+|.||||+|+..|+         .+++++|+++++++..      ..|..|+||||+|++.|
T Consensus       166 ~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g  244 (273)
T 2pnn_A          166 FLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG  244 (273)
T ss_dssp             HHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhC
Confidence            8888   77776 5677788888888888777         7888888888777652      45778888888888888


Q ss_pred             CHHHHHHHhhcCCccccccCCCCCcHH
Q 009452          211 SIELVDELVKVEPVIINMVDAKGNSAL  237 (534)
Q Consensus       211 ~~~iv~~Ll~~~~~~in~~d~~G~T~L  237 (534)
                      +.+++++|++.+..+.......+.+|-
T Consensus       245 ~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          245 KIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             CHHHHHHHHHHHTC-------------
T ss_pred             hHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            888888888865545555555555543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4.7e-31  Score=254.85  Aligned_cols=204  Identities=18%  Similarity=0.161  Sum_probs=132.0

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHHhCCcccccc----cccCCCcHHHHHHHC---CCHHHHHHHHhhCcccccc----
Q 009452           62 GETALYVAAEYGYVD----MVREMIRYHDTSLAGI----KARNGYDAFHIAAKQ---GCLEVLKILMEALPELLMT----  126 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~----iv~~Ll~~~~~~~~~~----~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~----  126 (534)
                      |.||||.|+..|+.+    ++++|++.+.  +.+.    .+..|.||||+|+..   |+.+++++|++.+++....    
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~--~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSK--YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTC--CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCC--CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            667777777777775    4455555542  3333    566677777777777   7777777777766554311    


Q ss_pred             ------CCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCC
Q 009452          127 ------FDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQ  200 (534)
Q Consensus       127 ------~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~  200 (534)
                            .|..|.||||+|+..|+.+++++|+++|+++ ...+..+.++                    .+ ....|..|.
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~--------------------~~-~~~~~~~g~  137 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQ--------------------KH-QGTCFYFGE  137 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGS--------------------CC-SSSCCCSCS
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccccccc--------------------cc-ccccccCCC
Confidence                  1244556666666666666666666665554 2223221100                    00 001122377


Q ss_pred             cHHHHHHhCCCHHHHHHHhhc--CCccccccCCCCCcHHHHHHH--cCc---------HHHHhhhcCCCh-------Hhh
Q 009452          201 TALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATR--KGR---------VQKLLNINGVDK-------AVI  260 (534)
Q Consensus       201 t~Lh~A~~~~~~~iv~~Ll~~--~~~~in~~d~~G~T~Lh~Aa~--~~~---------~~~ll~~~g~~~-------~~~  260 (534)
                      ||||+|+..|+.+++++|++.  .+.++|.+|.+|+||||+|+.  .++         +.++|+..|+++       +.+
T Consensus       138 tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~  217 (256)
T 2etb_A          138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS  217 (256)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC
T ss_pred             CHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc
Confidence            777777777777777777774  566677777778888888777  444         457777888888       888


Q ss_pred             hccCCcHHHHHHhcCchhHHHHHHhcCCC
Q 009452          261 NKSRETALDTAEKTGHSEIGVILKEHGVP  289 (534)
Q Consensus       261 n~~g~T~l~~A~~~~~~~i~~~L~~~g~~  289 (534)
                      |..|.|||++|+..|+.+++++|+++|.+
T Consensus       218 d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          218 NHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            88899999999999999999999888754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.1e-31  Score=257.91  Aligned_cols=213  Identities=16%  Similarity=0.187  Sum_probs=139.8

Q ss_pred             HhcCCCCCcHHHHHHHcCCHHHHHHHHHhCC--ccccc----ccccCCCcHHHHHHHC---CCHHHHHHHHhhCcccc--
Q 009452           56 SKMNQSGETALYVAAEYGYVDMVREMIRYHD--TSLAG----IKARNGYDAFHIAAKQ---GCLEVLKILMEALPELL--  124 (534)
Q Consensus        56 ~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~--~~~~~----~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~--  124 (534)
                      +..|..|.||||.|+..|+.++|+.|++.+.  ....+    ..+..|.||||+|+..   |+.+++++|++.+++..  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            4557888899999999999888888887431  11111    3467788888888876   88888888888765421  


Q ss_pred             ----c----cCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 009452          125 ----M----TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRND  196 (534)
Q Consensus       125 ----~----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d  196 (534)
                          +    ..|..|.||||+|+..|+.+++++|+++|+++ ...+..+.                  +.  .......+
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~------------------~~--~~~~~~~~  145 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDF------------------FK--KTKGRPGF  145 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGG------------------GS--SCSSSCCC
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cccccccc------------------cc--cccccccc
Confidence                1    13456666777766666666666666666665 22332110                  00  00011123


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhhc--CCccccccCCCCCcHHHHHHHcCc-----------HHHHhhhcCCChH-----
Q 009452          197 KKGQTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATRKGR-----------VQKLLNINGVDKA-----  258 (534)
Q Consensus       197 ~~g~t~Lh~A~~~~~~~iv~~Ll~~--~~~~in~~d~~G~T~Lh~Aa~~~~-----------~~~ll~~~g~~~~-----  258 (534)
                      ..|.||||+|+..|+.+++++|++.  .+.+++.+|.+|+||||+|+..++           +.++|+..|++++     
T Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~  225 (273)
T 2pnn_A          146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL  225 (273)
T ss_dssp             CSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccc
Confidence            4677777777777777777777764  456677777777777777777654           2456777777775     


Q ss_pred             --hhhccCCcHHHHHHhcCchhHHHHHHhcCCC
Q 009452          259 --VINKSRETALDTAEKTGHSEIGVILKEHGVP  289 (534)
Q Consensus       259 --~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~  289 (534)
                        ..|..|.|||++|+..|+.+++++|+++|++
T Consensus       226 ~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          226 EEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             ccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence              4788888888888888888888888888883

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.4e-30  Score=249.87  Aligned_cols=197  Identities=23%  Similarity=0.284  Sum_probs=162.9

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHc---CCHHHHHHHHHhCCcccc----
Q 009452           22 RDDTPLQSLVRTGSVE----LVLDMISSYGDMELREMLSKMNQSGETALYVAAEY---GYVDMVREMIRYHDTSLA----   90 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~----   90 (534)
                      .|.||||.|++.|+.+    ++++|++.+.+.+..  ....+..|.||||+|+..   |+.+++++|++.+.....    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~--~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS--AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG--GGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccc--cccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            4789999999999997    556666677653210  012688999999999999   999999999998643221    


Q ss_pred             -----cccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCC-------------CCcHHHHHHhcCCHHHHHHHHh
Q 009452           91 -----GIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSS-------------NTTALHTASSQGHVEVVKFLLE  152 (534)
Q Consensus        91 -----~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~~v~~Ll~  152 (534)
                           ..+|..|.||||+|+..|+.+++++|+++++++... |..             |.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                 123467999999999999999999999999886544 544             9999999999999999999999


Q ss_pred             ---cCCCchhhhhcCCCcHHHHHHH--cCcHH-------HHHHHHhcCCCCc------ccCCCCCCcHHHHHHhCCCHHH
Q 009452          153 ---KGSTLATIARSNGKTALHSAAR--NGHLE-------IVKALLSKEPGIV------LRNDKKGQTALHMAVKGQSIEL  214 (534)
Q Consensus       153 ---~~~~~~~~~~~~g~tpLh~A~~--~g~~~-------iv~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~i  214 (534)
                         +|+++ +..|.+|.||||+|+.  .++.+       ++++|+++|+++.      ...|..|+||||+|++.|+.++
T Consensus       158 ~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  236 (256)
T 2etb_A          158 NPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI  236 (256)
T ss_dssp             CSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence               88887 6678899999999998  78888       9999999988763      4568899999999999999999


Q ss_pred             HHHHhhcC
Q 009452          215 VDELVKVE  222 (534)
Q Consensus       215 v~~Ll~~~  222 (534)
                      +++|++.+
T Consensus       237 v~~Ll~~g  244 (256)
T 2etb_A          237 FRHILQRE  244 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhCC
Confidence            99999853

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=3.3e-29  Score=226.09  Aligned_cols=156  Identities=32%  Similarity=0.435  Sum_probs=94.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHH
Q 009452           26 PLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAA  105 (534)
Q Consensus        26 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa  105 (534)
                      +|+.|++.|+.++|+.|++.|+++      +.+|..|.||||+|+..|+.+++++|++.+  .+.+.++.+|.||||+|+
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadv------n~~d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADV------NASDSDGRTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcc--cchhhhccCCCCHHHHHH
Confidence            466666666666666666666543      344566666666666666666666666655  334455666666666666


Q ss_pred             HCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHH
Q 009452          106 KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL  185 (534)
Q Consensus       106 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll  185 (534)
                      ..|+.+++++|+++++++.. +|.+|+||||+|+..|+.+++++|+++|+++ ...|.+|.||||+|+..|+.+++++|+
T Consensus        79 ~~g~~~~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            66666666666666655433 3666666666666666666666666666665 445566666666666666666666666


Q ss_pred             hcCCCC
Q 009452          186 SKEPGI  191 (534)
Q Consensus       186 ~~~~~~  191 (534)
                      ++|+++
T Consensus       157 ~~GA~i  162 (169)
T 4gpm_A          157 KQGGWL  162 (169)
T ss_dssp             TC----
T ss_pred             HCCCCc
Confidence            666554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=3.4e-31  Score=265.67  Aligned_cols=255  Identities=18%  Similarity=0.110  Sum_probs=191.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc-------
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGI-------   92 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~-------   92 (534)
                      +..+.+|+|    ....++|++|+++|.+      ++..+..|.|+++     |+.++|+.|++.+.......       
T Consensus        20 ~~~~~~~~~----~~~~dlv~~ll~~ga~------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~   84 (327)
T 1sw6_A           20 NDRTAGPII----TFTHDLTSDFLSSPLK------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNN   84 (327)
T ss_dssp             -----CCEE----ECCTTCCCSTTTSSCC------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC------------
T ss_pred             ccccccchh----hhcCchHHHHhhCCcc------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhc
Confidence            345666666    3556789999999976      4567889999988     99999999999873321100       


Q ss_pred             --------cccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcC
Q 009452           93 --------KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN  164 (534)
Q Consensus        93 --------~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  164 (534)
                              +.....+.+|+|+..+..++++.|++.+.++....|..|+||||+|+..|+.+++++|+++|+++ ...|.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~  163 (327)
T 1sw6_A           85 DSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNM  163 (327)
T ss_dssp             -------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTT
T ss_pred             ccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence                    11112234588888888899999999988877646999999999999999999999999999998 678899


Q ss_pred             CCcHHHHHHHcCc---HHHHHHHHhcCCCCcccCCCCCCcHHHHHHh----CCCHHHHHHHhhcC---------------
Q 009452          165 GKTALHSAARNGH---LEIVKALLSKEPGIVLRNDKKGQTALHMAVK----GQSIELVDELVKVE---------------  222 (534)
Q Consensus       165 g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~iv~~Ll~~~---------------  222 (534)
                      |.||||+|+..|+   .++++.|++.+.......|..|+||||+|+.    .|+.+++++|++..               
T Consensus       164 g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~  243 (327)
T 1sw6_A          164 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG  243 (327)
T ss_dssp             CCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC
T ss_pred             CCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhh
Confidence            9999999999998   6788888887744445668999999999999    99999999999753               


Q ss_pred             ----CccccccCCCCCcHHHHHHHcCcHHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCC
Q 009452          223 ----PVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKP  296 (534)
Q Consensus       223 ----~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~  296 (534)
                          +.+++.+|..|.||||.|+.    .++|+..  +++.+|..|+||||+|+..|+.+++++|+++|+++......
T Consensus       244 ~~~~g~~~~~~~~~g~t~L~~a~~----~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~  315 (327)
T 1sw6_A          244 TNEKESKPNDKNGERKDSILENLD----LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS  315 (327)
T ss_dssp             ----------------CHHHHHCS----HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTT
T ss_pred             hhcccCCcccccccCCChhHHHHH----HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence                67889999999999999986    5555555  68899999999999999999999999999999998655443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=4.4e-30  Score=248.57  Aligned_cols=199  Identities=22%  Similarity=0.252  Sum_probs=158.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH----hcCChhHHHHHHhcCCCCCcHHHHHH---HcCCHHHHHHHHHhCCc-----
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMIS----SYGDMELREMLSKMNQSGETALYVAA---EYGYVDMVREMIRYHDT-----   87 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~l~~~n~~g~T~Lh~Aa---~~g~~~iv~~Ll~~~~~-----   87 (534)
                      +..|.++||.|++.|+.+.++.|++    .+.+.+...  ...+..|.||||+|+   ..|+.+++++|++.+..     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~--~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE--FREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG--GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh--hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            5678899999999999997666655    665532211  123477999999999   77999999999997632     


Q ss_pred             ----ccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCC--------------CCCCcHHHHHHhcCCHHHHHH
Q 009452           88 ----SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFD--------------SSNTTALHTASSQGHVEVVKF  149 (534)
Q Consensus        88 ----~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~v~~  149 (534)
                          ......+..|.||||+|+..|+.+++++|+++++++... |              ..|.||||+|+..|+.+++++
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                223344557899999999999999999999988876544 4              578999999999999999999


Q ss_pred             HHh---cCCCchhhhhcCCCcHHHHHHHcCc---------HHHHHHHHhcCCCCc------ccCCCCCCcHHHHHHhCCC
Q 009452          150 LLE---KGSTLATIARSNGKTALHSAARNGH---------LEIVKALLSKEPGIV------LRNDKKGQTALHMAVKGQS  211 (534)
Q Consensus       150 Ll~---~~~~~~~~~~~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~  211 (534)
                      |++   +|+++ +..|..|.||||+|+..|+         .+++++|+++|+++.      ...|..|+||||+|++.|+
T Consensus       159 Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          159 LTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            999   78887 6678889999999998777         688999998887763      3468889999999999999


Q ss_pred             HHHHHHHhhcC
Q 009452          212 IELVDELVKVE  222 (534)
Q Consensus       212 ~~iv~~Ll~~~  222 (534)
                      .+++++|++++
T Consensus       238 ~~~v~~Ll~~g  248 (260)
T 3jxi_A          238 IGIFQHIIRRE  248 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999998854

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=1.3e-28  Score=222.06  Aligned_cols=157  Identities=36%  Similarity=0.491  Sum_probs=129.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (534)
                      ++|+.||+.|+.++|+.|++.|  .+++.+|.+|+||||+|+..|+.++++.|++.++++.. +|.+|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~-~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh-hccCCCCHHHHHHHcCC
Confidence            4688899999999999999877  44667888899999999999999999999988887654 48888899999999999


Q ss_pred             HHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCC
Q 009452          144 VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP  223 (534)
Q Consensus       144 ~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~  223 (534)
                      .+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|+++++++... |..|+||||+|++.|+.+++++|++ .+
T Consensus        83 ~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~-~G  159 (169)
T 4gpm_A           83 KEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEVVKLLEK-QG  159 (169)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHT-C-
T ss_pred             HHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHH-CC
Confidence            99999999988887 567888889999999999999999998888887644 7888889999888888888888888 44


Q ss_pred             ccc
Q 009452          224 VII  226 (534)
Q Consensus       224 ~~i  226 (534)
                      .++
T Consensus       160 A~i  162 (169)
T 4gpm_A          160 GWL  162 (169)
T ss_dssp             ---
T ss_pred             CCc
Confidence            433

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.7e-30  Score=249.06  Aligned_cols=212  Identities=19%  Similarity=0.173  Sum_probs=132.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH----hCCccccc--ccccCCCcHHHHHH---HCCCHHHHHHHHhhCccc------
Q 009452           59 NQSGETALYVAAEYGYVDMVREMIR----YHDTSLAG--IKARNGYDAFHIAA---KQGCLEVLKILMEALPEL------  123 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~Ll~----~~~~~~~~--~~~~~g~t~Lh~Aa---~~g~~~iv~~Ll~~~~~~------  123 (534)
                      +..|.|+||.|++.|+.+.++.|++    .+......  ..+..|.||||+|+   ..|+.+++++|++.+++.      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            5567778888888888775444444    55332221  12255777777777   557777777777765431      


Q ss_pred             ----cccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 009452          124 ----LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKG  199 (534)
Q Consensus       124 ----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  199 (534)
                          ....|..|+||||+|+..|+.+++++|+++|+++. ..+..+..                    .+......+..|
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~--------------------~~~~~~~~~~~g  140 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFF--------------------QPKDEGGYFYFG  140 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCC--------------------SSSCCCCSCCSC
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-cccccccc--------------------CcccccccccCC
Confidence                11123345555555555555555555555555542 22210000                    000000112567


Q ss_pred             CcHHHHHHhCCCHHHHHHHhhc--CCccccccCCCCCcHHHHHHHcCc-----------HHHHhhhcCCCh-------Hh
Q 009452          200 QTALHMAVKGQSIELVDELVKV--EPVIINMVDAKGNSALHIATRKGR-----------VQKLLNINGVDK-------AV  259 (534)
Q Consensus       200 ~t~Lh~A~~~~~~~iv~~Ll~~--~~~~in~~d~~G~T~Lh~Aa~~~~-----------~~~ll~~~g~~~-------~~  259 (534)
                      .||||+|+..|+.+++++|++.  .+.+++.+|.+|+||||+|+..++           +.++|+..|+++       +.
T Consensus       141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  220 (260)
T 3jxi_A          141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL  220 (260)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhc
Confidence            7777777777777777777774  456677777788888888876554           256777788887       67


Q ss_pred             hhccCCcHHHHHHhcCchhHHHHHHhcCCCCC
Q 009452          260 INKSRETALDTAEKTGHSEIGVILKEHGVPCG  291 (534)
Q Consensus       260 ~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~  291 (534)
                      .|..|.|||++|+..|+.+++++|+++|+...
T Consensus       221 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          221 LNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            88899999999999999999999999887643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1e-28  Score=241.47  Aligned_cols=191  Identities=25%  Similarity=0.277  Sum_probs=107.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHH
Q 009452           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (534)
                      ..+++|.|+..|+.+.++.+++.+.+    ..++..|.+|.||||+|+..|+.+++++|++.+. .+.+..+..|.||||
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~----~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpL~  150 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLD----YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGV-CKVDKQNRAGYSPIM  150 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHH----HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSC-CCTTCCCTTSCCHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHh----hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CcCCCCCCCCCCHHH
Confidence            34555666666666666665554321    2345555666666666666666666666666542 133445555666666


Q ss_pred             HHH-----HCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCc
Q 009452          103 IAA-----KQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH  177 (534)
Q Consensus       103 ~Aa-----~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~  177 (534)
                      +|+     ..++.++++.|++.+.... ..|..|+||||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+
T Consensus       151 ~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          151 LTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             HGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCC
Confidence            666     3455566666666554332 23555666666666666666666666666554 4455556666666666666


Q ss_pred             HHHHHHHHh-cCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          178 LEIVKALLS-KEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       178 ~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                      .+++++|++ .+.++.. .|..|+||||+|++.|+.+++++|++.
T Consensus       229 ~~iv~~Ll~~~gad~~~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          229 KEIAGLLLAVPSCDISL-TDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHHHHHHTSTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcC-cCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            666666665 4444432 355566666666666666666666553

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=3.4e-28  Score=237.79  Aligned_cols=188  Identities=26%  Similarity=0.299  Sum_probs=122.2

Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCcc-ccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHH---
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPE-LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA---  173 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~---  173 (534)
                      .+++|.|+..|+.+.++.+++...+ ..+..|.+|.||||+|+..|+.+++++|++.|+......+..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            3456666666666666666655433 233446666666666666666666666666666333556666667777666   


Q ss_pred             --HcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHH
Q 009452          174 --RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKL  249 (534)
Q Consensus       174 --~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~l  249 (534)
                        ..++.+++++|++.+.... ..|..|+||||+|+..|+.+++++|++ .+.++|.+|.+|+||||+|+..|+.  .++
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence              4566667777776664433 335666777777777777777777776 4556667777777777777776664  455


Q ss_pred             hhh-cCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcC
Q 009452          250 LNI-NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  287 (534)
Q Consensus       250 l~~-~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g  287 (534)
                      |+. .|++++..|..|.|||++|+..|+.+++++|++++
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            555 67777777777777777777777777777777654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=3.7e-27  Score=217.23  Aligned_cols=164  Identities=27%  Similarity=0.247  Sum_probs=143.6

Q ss_pred             HHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCC
Q 009452           53 EMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT  132 (534)
Q Consensus        53 ~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~  132 (534)
                      .+++.+|..|.||||+|+..|+.+++++|++.+.  ..+..+..|.||||+|+..|+.+++++|++.++++.. .|..|.
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~  102 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFD--KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSGK  102 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSC
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc--ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCC
Confidence            3456778899999999999999999999999863  4566788899999999999999999999999887654 488899


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCH
Q 009452          133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSI  212 (534)
Q Consensus       133 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  212 (534)
                      ||||+|+..|+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++++++... |..|.||||+|+..|+.
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~  180 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQ  180 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCcH
Confidence            9999999999999999999999887 567888999999999999999999999998887644 88999999999999999


Q ss_pred             HHHHHHhhc
Q 009452          213 ELVDELVKV  221 (534)
Q Consensus       213 ~iv~~Ll~~  221 (534)
                      +++++|++.
T Consensus       181 ~~v~~Ll~~  189 (192)
T 2rfm_A          181 EVIKIFTEV  189 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=2.2e-27  Score=214.65  Aligned_cols=170  Identities=22%  Similarity=0.303  Sum_probs=119.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      +.||||.|+..|+.+++++|++.+. ...+..+..|.||||+|+..|+.+++++|++++++... .|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGD-NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCS-GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCc-ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-hcccCCCHHHHHHHC
Confidence            4577888888888888888887653 23455677778888888888888888888877766543 377778888888888


Q ss_pred             CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                      |+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|++ 
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~-  156 (172)
T 3v30_A           80 GYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-EADSGYTPMDLAVALGYRKVQQVIEN-  156 (172)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHhCcHHHHHHHHH-
Confidence            8888888888877776 55667777888888888888888888877777654 36777788888888888888887777 


Q ss_pred             CCccccccCCCCCcH
Q 009452          222 EPVIINMVDAKGNSA  236 (534)
Q Consensus       222 ~~~~in~~d~~G~T~  236 (534)
                      .+..+..++..|.||
T Consensus       157 ~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          157 HILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHSCC-------
T ss_pred             HHHHHhcccCCCCCC
Confidence            344455566666655

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=3.5e-27  Score=213.30  Aligned_cols=170  Identities=20%  Similarity=0.314  Sum_probs=116.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHH
Q 009452           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (534)
                      +.||||.|++.|+.+.++.|++.++.     .++..+..|.||||+|+..|+.+++++|++.+  .+.+..+..|.||||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~   74 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN-----LVNKPDERGFTPLIWASAFGEIETVRFLLEWG--ADPHILAKERESALS   74 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG-----GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTCCCHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc-----cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCchhhcccCCCHHH
Confidence            45677777777777777777777652     35666777777777777777777777777776  334556677777777


Q ss_pred             HHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHH
Q 009452          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK  182 (534)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~  182 (534)
                      +|+..|+.+++++|++++.++.. .|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|+.++++
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A           75 LASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHH
Confidence            77777777777777777766543 3677777777777777777777777777776 556677777777777777777777


Q ss_pred             HHHhcCCCCcccCCCCCCcH
Q 009452          183 ALLSKEPGIVLRNDKKGQTA  202 (534)
Q Consensus       183 ~Ll~~~~~~~~~~d~~g~t~  202 (534)
                      +|++++++.... +..|.||
T Consensus       153 ~L~~~~~~~~~~-~~~~~~p  171 (172)
T 3v30_A          153 VIENHILKLFQS-NLVPADP  171 (172)
T ss_dssp             HHHHHHHHHSCC--------
T ss_pred             HHHHHHHHHhcc-cCCCCCC
Confidence            777776654432 4444444

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=3.7e-27  Score=217.21  Aligned_cols=165  Identities=21%  Similarity=0.237  Sum_probs=150.6

Q ss_pred             HhhhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc
Q 009452           14 MKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIK   93 (534)
Q Consensus        14 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~   93 (534)
                      ...+..|..|.||||+|+..|+.+++++|++.+.+.      +..+..|.||||+|+..|+.+++++|++.+.  ..+..
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~   97 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL------EDKDIEGSTALIWAVKNNRLGIAEKLLSKGS--NVNTK   97 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC--CTTCC
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc------ccccccCccHHHHHHHcCCHHHHHHHHHCCC--CCCCC
Confidence            345678999999999999999999999999998763      5668899999999999999999999999874  46678


Q ss_pred             ccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHH
Q 009452           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA  173 (534)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~  173 (534)
                      +..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|+++ ...|..|.||||+|+
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~  175 (192)
T 2rfm_A           98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASAR  175 (192)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence            88999999999999999999999999888654 4899999999999999999999999999997 678899999999999


Q ss_pred             HcCcHHHHHHHHhcC
Q 009452          174 RNGHLEIVKALLSKE  188 (534)
Q Consensus       174 ~~g~~~iv~~Ll~~~  188 (534)
                      ..|+.+++++|++.+
T Consensus       176 ~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          176 IFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHhcc
Confidence            999999999999864

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.9e-27  Score=211.47  Aligned_cols=157  Identities=25%  Similarity=0.373  Sum_probs=75.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHH
Q 009452           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (534)
                      ..||||.|++.|+.+++++|++.+.+.      +..+..|.||||+|+. |+.+++++|++.+  .+.+.++..|.||||
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~   75 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNV------NAQNGFGRTALQVMKL-GNPEIARRLLLRG--ANPDLKDRTGFAVIH   75 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCT------TCCCTTSCCHHHHCCS-SCHHHHHHHHHTT--CCTTCCCTTSCCHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCc------cccCccCccHHHHHHc-CcHHHHHHHHHcC--CCCCCCCCCCCCHHH
Confidence            334555555555555555555544332      2334445555555555 5555555555543  223334444555555


Q ss_pred             HHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHH
Q 009452          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK  182 (534)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~  182 (534)
                      +|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|++.....+..|.||||+|+..|+.++++
T Consensus        76 ~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A           76 DAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS  154 (162)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            55555555555555554444322 24445555555555555555555555544433344444555555555555555555


Q ss_pred             HHHhcCC
Q 009452          183 ALLSKEP  189 (534)
Q Consensus       183 ~Ll~~~~  189 (534)
                      +|+++|+
T Consensus       155 ~Ll~~GA  161 (162)
T 1ihb_A          155 LMQANGA  161 (162)
T ss_dssp             HHHHTC-
T ss_pred             HHHHhCC
Confidence            5554443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=6.2e-30  Score=259.87  Aligned_cols=155  Identities=23%  Similarity=0.245  Sum_probs=69.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccc-ccccccCCCcHH
Q 009452           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSL-AGIKARNGYDAF  101 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~-~~~~~~~g~t~L  101 (534)
                      +.||||.|++.|+.++|++|++.+++...   ....|..|.||||+||..|+.++|++|++.+++.. .+..+.+ .|||
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~---~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEI---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSS---CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHH---HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            34555555555555555555554431100   01112234445555555555555555555442100 1111111 4555


Q ss_pred             HHHHHCCCHHHHHHHHhhCccccc-cCCCCCCcHHHHHH-hcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHH
Q 009452          102 HIAAKQGCLEVLKILMEALPELLM-TFDSSNTTALHTAS-SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE  179 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~-~~d~~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  179 (534)
                      |+|+..|+.+++++|++++++... ..|..|.||||+|+ ..|+.+++++|++.|+        .|.||||.|+.+|+.+
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHH
Confidence            555555555555555555544322 12444555555555 5555555555555331        1345555555555555


Q ss_pred             HHHHHHhcCC
Q 009452          180 IVKALLSKEP  189 (534)
Q Consensus       180 iv~~Ll~~~~  189 (534)
                      ++++|++.++
T Consensus       240 vv~lL~~~ga  249 (376)
T 2aja_A          240 VNPFIARHVN  249 (376)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhcCc
Confidence            5555555443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=5.2e-27  Score=211.06  Aligned_cols=154  Identities=21%  Similarity=0.281  Sum_probs=71.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      |.||||.|+..|+.+++++|++.+  ...+.++..|.||||+|+..|+.+++++|++.+++... .|..|.||||+|+..
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSK   79 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHc
Confidence            344444444444444444444443  22333444444444444444444444444444433322 244444444444444


Q ss_pred             CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      |+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            4444444444444443 33344444555555555555555555544444332 24445555555555555555555444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=8e-27  Score=209.85  Aligned_cols=160  Identities=21%  Similarity=0.299  Sum_probs=134.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHH
Q 009452           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (534)
                      .|.||||.|++.|+.+++++|++.+      ..++..|..|.||||+|+..|+.+++++|++.+  .+.+..+..|.|||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L   73 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE------NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADPQLLGKGRESAL   73 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC------CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCcCCCCCcHH
Confidence            5788999999999999999999875      336778888899999999999999999999876  44566788889999


Q ss_pred             HHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHH
Q 009452          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV  181 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv  181 (534)
                      |+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|+.+++
T Consensus        74 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A           74 SLACSKGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHH
Confidence            999999999999999998877654 4888899999999999999999999988887 56788889999999999999999


Q ss_pred             HHHHhcCCCC
Q 009452          182 KALLSKEPGI  191 (534)
Q Consensus       182 ~~Ll~~~~~~  191 (534)
                      ++|++++.+.
T Consensus       152 ~~L~~~~~~~  161 (167)
T 3v31_A          152 QVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998876554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.5e-26  Score=208.62  Aligned_cols=155  Identities=31%  Similarity=0.448  Sum_probs=83.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHh
Q 009452           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS  140 (534)
Q Consensus        61 ~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  140 (534)
                      .+.|+|+.|++.|+.+++++|++.+  .+.+.++..|.||||+|+..|+.+++++|++++.+... .|..|.||||+|+.
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLAAL   89 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHH
Confidence            3445555555555555555555544  22334445555555555555555555555555544332 25555555555555


Q ss_pred             cCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       141 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      .|+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|++.|+.+++++|++
T Consensus        90 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA-QDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            55555555555555554 33445555555555555555555555555555432 24555555555555555555555554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=1.1e-26  Score=207.72  Aligned_cols=156  Identities=22%  Similarity=0.281  Sum_probs=136.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHh
Q 009452           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS  140 (534)
Q Consensus        61 ~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  140 (534)
                      ...||||.|+..|+.+++++|++.+  ...+..+..|.||||+|+. |+.+++++|++.++++.. .|..|.||||+|+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-KDRTGFAVIHDAAR   79 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHH
Confidence            4578999999999999999999876  4456678889999999998 999999999999877654 48889999999999


Q ss_pred             cCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       141 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      .|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|++++++.....|..|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999887 56788899999999999999999999999988666678899999999999999999999998


Q ss_pred             c
Q 009452          221 V  221 (534)
Q Consensus       221 ~  221 (534)
                      .
T Consensus       159 ~  159 (162)
T 1ihb_A          159 N  159 (162)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.1e-29  Score=239.28  Aligned_cols=201  Identities=21%  Similarity=0.161  Sum_probs=142.5

Q ss_pred             HHHHHhCCccc-ccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc
Q 009452           79 REMIRYHDTSL-AGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL  157 (534)
Q Consensus        79 ~~Ll~~~~~~~-~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  157 (534)
                      +.|++.+.... ....+.+|.||||.|+..|+.+++++|++.++++.. .|..|+||||+|+..|+.+++++|+++|+++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            44555543222 233445566778888888888888888877776543 4777888888888888888888888887776


Q ss_pred             hhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHH--HhCCCHHHHHHHhhcCCccccccCCCCCc
Q 009452          158 ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA--VKGQSIELVDELVKVEPVIINMVDAKGNS  235 (534)
Q Consensus       158 ~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~iv~~Ll~~~~~~in~~d~~G~T  235 (534)
                       +..|..|.||||+|+..|+.+++++|++.++++....+..|+||||+|  +..|+.+++++|++ .+.+++.+|..|.|
T Consensus        81 -n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~  158 (229)
T 2vge_A           81 -NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD-VEQSMGLMNSGAVY  158 (229)
T ss_dssp             -TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH-HHHHTTTSGGGEEE
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHH-cCCCcccccCCchH
Confidence             556777888888888888888888888888777665446788888888  78888888888887 45567778888888


Q ss_pred             HHHHHHHcCcHHHHhhhcCCC--hHhhhccCCcHHHHHHhcCchhHHHHH
Q 009452          236 ALHIATRKGRVQKLLNINGVD--KAVINKSRETALDTAEKTGHSEIGVIL  283 (534)
Q Consensus       236 ~Lh~Aa~~~~~~~ll~~~g~~--~~~~n~~g~T~l~~A~~~~~~~i~~~L  283 (534)
                      |+|.++.... ..+++..|++  ++.+|..|+|||++|+..|+.++++.+
T Consensus       159 ~l~~~~~~~~-~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          159 ALWDYSAEFG-DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             ESSCBCCSST-TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             HHHHHhhccc-cccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            8876554433 3456667777  667788888888888888888777653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=3.7e-26  Score=206.12  Aligned_cols=161  Identities=24%  Similarity=0.315  Sum_probs=119.5

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      .....+.++||.|++.|+.++|++|++.+      ..++..|..|.||||+|+..|+.+++++|++.+  .+.+..+..|
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g   80 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANG------ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG--ADVNAVDHAG   80 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTS
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCC
Confidence            35566677888888888888888888764      235666777888888888888888888888765  3445567778


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCc
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH  177 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~  177 (534)
                      .||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|+++ ...|..|.||||+|+..|+
T Consensus        81 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E           81 MTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCC
Confidence            8888888888888888888887776543 3777888888888888888888888888776 5567778888888888888


Q ss_pred             HHHHHHHHhcC
Q 009452          178 LEIVKALLSKE  188 (534)
Q Consensus       178 ~~iv~~Ll~~~  188 (534)
                      .+++++|++.|
T Consensus       159 ~~~~~~L~~~G  169 (169)
T 2y1l_E          159 EDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHHcC
Confidence            88888887654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4.4e-26  Score=201.99  Aligned_cols=150  Identities=26%  Similarity=0.322  Sum_probs=91.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcC
Q 009452           63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG  142 (534)
Q Consensus        63 ~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  142 (534)
                      .|+||.|+..|+.+++++|++.+.+..   .+..|.||||+|+..|+.+++++|++.+++... .|..|.||||+|+..|
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcC
Confidence            356666666666666666666553221   355566666666666666666666666555432 3556666666666666


Q ss_pred             CHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q 009452          143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL  218 (534)
Q Consensus       143 ~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  218 (534)
                      +.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|
T Consensus        79 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           79 HANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHh
Confidence            666666666666665 44556666666666666666666666666665543 356666666666666666666654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=4.5e-29  Score=237.03  Aligned_cols=197  Identities=18%  Similarity=0.158  Sum_probs=156.4

Q ss_pred             HHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHh
Q 009452           39 VLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME  118 (534)
Q Consensus        39 v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~  118 (534)
                      ++.|++++.+++.   .+..+..|.||||+|+..|+.+++++|++.+.  +.+.++..|.||||+|+..|+.+++++|++
T Consensus         1 v~~ll~~~~~~~~---~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A            1 MRSVLRKAGSPRK---ARRARLNPLVLLLDAALTGELEVVQQAVKEMN--DPSQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             ---------CCCC---CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CeehhccCCCCcc---ccccccchhHHHHHHHHcCCHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4567777765421   23445677889999999999999999999874  456788999999999999999999999999


Q ss_pred             hCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHH--HHcCcHHHHHHHHhcCCCCcccCC
Q 009452          119 ALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA--ARNGHLEIVKALLSKEPGIVLRND  196 (534)
Q Consensus       119 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~d  196 (534)
                      .++++.. .|..|+||||+|+..|+.+++++|+++|+++....+.+|.||||+|  +..|+.+++++|++.++++... |
T Consensus        76 ~ga~~n~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~-~  153 (229)
T 2vge_A           76 AGANVNS-PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-N  153 (229)
T ss_dssp             TTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS-G
T ss_pred             CCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc-c
Confidence            9887654 4889999999999999999999999999998554457899999999  9999999999999999887654 7


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHhhcCCcc--ccccCCCCCcHHHHHHHcCcH
Q 009452          197 KKGQTALHMAVKGQSIELVDELVKVEPVI--INMVDAKGNSALHIATRKGRV  246 (534)
Q Consensus       197 ~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~--in~~d~~G~T~Lh~Aa~~~~~  246 (534)
                      ..|.|++|.++..+..   ++|++ .+.+  ++.+|.+|+||||+|+..|+.
T Consensus       154 ~~~~~~l~~~~~~~~~---~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          154 SGAVYALWDYSAEFGD---ELSFR-EGESVTVLRRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             GGEEEESSCBCCSSTT---BCCBC-TTCEEEEEESSCTTCSSEEEEEETTEE
T ss_pred             CCchHHHHHHhhcccc---ccCcc-ccccccccccCCCcccHHHHHHHcCCc
Confidence            7888998866655433   45566 3444  788999999999999999985

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=5.4e-26  Score=201.88  Aligned_cols=153  Identities=25%  Similarity=0.377  Sum_probs=119.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      |.||||.|+..|+.+++++|++. ...+.+..+..|.||||+ +..|+.+++++|++.++++.. .|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV-QDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHc
Confidence            45788888888888888888876 444566677788888888 778888888888888776543 477888888888888


Q ss_pred             CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      |+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|++. .++. ..|..|.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            8888888888888776 55677788888888888888888888877 5544 347788888888888888888888876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=5.7e-26  Score=201.27  Aligned_cols=151  Identities=23%  Similarity=0.319  Sum_probs=137.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHH
Q 009452           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (534)
                      ..++||.|++.|+.+++++|++.+.+..       .+..|.||||+|+..|+.+++++|++.+  ...+..+..|.||||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~   72 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-------TDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-------CCTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTTCCCHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-------cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHH
Confidence            4589999999999999999999987532       4788999999999999999999999987  445678889999999


Q ss_pred             HHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHH
Q 009452          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVK  182 (534)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~  182 (534)
                      +|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|+.++++
T Consensus        73 ~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~  150 (153)
T 1awc_B           73 MAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999888654 4899999999999999999999999999997 667889999999999999999999


Q ss_pred             HH
Q 009452          183 AL  184 (534)
Q Consensus       183 ~L  184 (534)
                      +|
T Consensus       151 ~L  152 (153)
T 1awc_B          151 IL  152 (153)
T ss_dssp             HH
T ss_pred             Hh
Confidence            87

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.2e-26  Score=208.17  Aligned_cols=156  Identities=25%  Similarity=0.327  Sum_probs=73.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009452           60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS  139 (534)
Q Consensus        60 ~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  139 (534)
                      .+|.||||.|+..|+.+++++|++.+. ......+..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~   83 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNAC   83 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHH
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc-cCCCCCCHHHHHH
Confidence            334444444444444444444444321 22233334444555555555555555555544444322 2444555555555


Q ss_pred             hcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHh
Q 009452          140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV  219 (534)
Q Consensus       140 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  219 (534)
                      ..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++++.++.. +|..|+||||+|++ ++.+++++|+
T Consensus        84 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK-KNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCChhHhHhc-CChHHHHHHh
Confidence            555555555555554444 33444455555555555555555555555444332 24455555555433 4445555554


Q ss_pred             h
Q 009452          220 K  220 (534)
Q Consensus       220 ~  220 (534)
                      +
T Consensus       161 ~  161 (165)
T 3twr_A          161 G  161 (165)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.8e-28  Score=249.05  Aligned_cols=211  Identities=20%  Similarity=0.202  Sum_probs=159.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCcc-cccccccCCCcHHHHHHHCCCHHHHHHHHhhCccc--cccCCCCCCcHH
Q 009452           59 NQSGETALYVAAEYGYVDMVREMIRYHDTS-LAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL--LMTFDSSNTTAL  135 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpL  135 (534)
                      +.++.||||+||..|+.++|++|++.+.+. .....+..|.||||+|+..|+.+++++|++++++.  ....+.+ .|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            445679999999999999999999987532 11234556889999999999999999999999642  1111222 8999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCchh-hhhcCCCcHHHHHH-HcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHH
Q 009452          136 HTASSQGHVEVVKFLLEKGSTLAT-IARSNGKTALHSAA-RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE  213 (534)
Q Consensus       136 h~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~g~tpLh~A~-~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  213 (534)
                      |+|+..|+.+++++|+++|+++.. ..|..|.||||+|+ .+|+.+++++|++.+.        .|.||||.|+.+|+.+
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHH
Confidence            999999999999999999998733 27788999999999 9999999999998653        3789999999999999


Q ss_pred             HHHHHhhcCCccccccCCCCCcHHHHHHHcCcH-----------------------------HHHhhh---------cCC
Q 009452          214 LVDELVKVEPVIINMVDAKGNSALHIATRKGRV-----------------------------QKLLNI---------NGV  255 (534)
Q Consensus       214 iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~-----------------------------~~ll~~---------~g~  255 (534)
                      ++++|++. +.+++..|.    +++.|+..|+.                             ..+|+.         .|+
T Consensus       240 vv~lL~~~-ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~  314 (376)
T 2aja_A          240 VNPFIARH-VNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT  314 (376)
T ss_dssp             HHHHHHHH-HHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCS
T ss_pred             HHHHHHhc-CcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCC
Confidence            99999984 444444332    23333333221                             122222         233


Q ss_pred             ChHhhhccCCcHHHHHHhcCchhHHHHHHhcC
Q 009452          256 DKAVINKSRETALDTAEKTGHSEIGVILKEHG  287 (534)
Q Consensus       256 ~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g  287 (534)
                      ++    +.+.||+++|+..|+.+++++|++.|
T Consensus       315 ~~----n~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          315 IP----GDANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             ST----TCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             CC----CCccHHHHHHHHcCcHHHHHHHHcCh
Confidence            33    45678999999999999999999765

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=5.4e-28  Score=231.14  Aligned_cols=207  Identities=18%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHh
Q 009452           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS  140 (534)
Q Consensus        61 ~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  140 (534)
                      .|.||||.|+..|+.+.++.|++.+.....   +..|.||||.|+..|+.+++++|++.++++. ..|..|.||||+|+.
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence            456666666666666666666665533221   2455666666666666666666666665433 336666666666666


Q ss_pred             cCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHH--HhCCCHHHHHHH
Q 009452          141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA--VKGQSIELVDEL  218 (534)
Q Consensus       141 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~iv~~L  218 (534)
                      .|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++++++....+..++||||+|  +..|+.+++++|
T Consensus        80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            66666666666666665 445666666666666666666666666666665544223333666666  556666666666


Q ss_pred             hhcCCcccc---------ccCCCCCcHHHHHHHcCcHHHHhhhcCCC------hHhhhccCCcHHHHHHh
Q 009452          219 VKVEPVIIN---------MVDAKGNSALHIATRKGRVQKLLNINGVD------KAVINKSRETALDTAEK  273 (534)
Q Consensus       219 l~~~~~~in---------~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~~------~~~~n~~g~T~l~~A~~  273 (534)
                      ++. +.+++         ..|..|.++++++...|....++...+.+      ....+..|.+|.++...
T Consensus       159 l~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~  227 (239)
T 1ycs_B          159 YGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL  227 (239)
T ss_dssp             HHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEEC
T ss_pred             HHh-hhcccccccceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeE
Confidence            663 22222         23677888888888888765555554433      23456778888776543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=8.1e-26  Score=205.82  Aligned_cols=155  Identities=19%  Similarity=0.277  Sum_probs=69.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      +.++||.|+..|+.+++++|++.+ +.+.+..+..|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASH   82 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHc
Confidence            344444444444444444444432 122333444444444444444444444444444443322 244444444444444


Q ss_pred             CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      |+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..++.+++++|++
T Consensus        83 ~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB-CCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch-hccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443 33344444444444444444444444444444332 24444444444444444444444444

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=5.1e-26  Score=207.16  Aligned_cols=162  Identities=23%  Similarity=0.324  Sum_probs=90.2

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcC
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG  176 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  176 (534)
                      +.++||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|+++|+++ ...+..|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence            4555666666666666666666544444444555666666666666666666666655554 334555555555555555


Q ss_pred             cHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhcCCC
Q 009452          177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVD  256 (534)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~~  256 (534)
                      +.+++++|+++++++... |..|.||||+|+..|+.+++++|++                                .|++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~--------------------------------~ga~  130 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVA--------------------------------NGAL  130 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--------------------------------TTCC
T ss_pred             CHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHH--------------------------------CCCC
Confidence            555555555555554332 4555555555555555555555554                                4555


Q ss_pred             hHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCC
Q 009452          257 KAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK  292 (534)
Q Consensus       257 ~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~  292 (534)
                      ++..|..|.||+++|...++.+++++|+++|++...
T Consensus       131 ~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred             cchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            555555555555555555556666666666666543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=4.1e-26  Score=204.75  Aligned_cols=156  Identities=29%  Similarity=0.350  Sum_probs=76.8

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhC
Q 009452          130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG  209 (534)
Q Consensus       130 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  209 (534)
                      +|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|+++++++... |..|.||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHHHc
Confidence            34444444444444444444444332222333334444444444444444444444444443322 44444555555555


Q ss_pred             CCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcC
Q 009452          210 QSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  287 (534)
Q Consensus       210 ~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g  287 (534)
                      |+.+++++|++ .+.+++.+|..|+||||+|+..++.  .++|+..|++++.+|..|.||+++|.. ++.+++++|+++|
T Consensus        86 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A           86 GHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             CcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            55555555444 3344455555555555555555543  344445556666666666666666554 6667777777766


Q ss_pred             C
Q 009452          288 V  288 (534)
Q Consensus       288 ~  288 (534)
                      +
T Consensus       164 A  164 (165)
T 3twr_A          164 A  164 (165)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.8e-25  Score=198.48  Aligned_cols=155  Identities=26%  Similarity=0.380  Sum_probs=138.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHH
Q 009452           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (534)
                      ++.||||.|++.|+.+++++|++...     ..++..+..|.||||+ +..|+.+++++|++.+  .+.+.++..|.|||
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L   72 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHREL-----VHPDALNRFGKTALQV-MMFGSTAIALELLKQG--ASPNVQDTSGTSPV   72 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTC-----CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT--CCTTCCCTTSCCHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhC-----cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC--CCCCCcCCCCCCHH
Confidence            35789999999999999999999831     1135678899999999 9999999999999987  45667889999999


Q ss_pred             HHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHH
Q 009452          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV  181 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv  181 (534)
                      |+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|++. +++ ...|..|.||||+|+..|+.+++
T Consensus        73 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v  149 (156)
T 1bd8_A           73 HDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHH
Confidence            999999999999999999987654 488999999999999999999999999 665 67889999999999999999999


Q ss_pred             HHHHhc
Q 009452          182 KALLSK  187 (534)
Q Consensus       182 ~~Ll~~  187 (534)
                      ++|+++
T Consensus       150 ~~Ll~~  155 (156)
T 1bd8_A          150 DILQGH  155 (156)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            999875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=5.6e-26  Score=217.11  Aligned_cols=208  Identities=20%  Similarity=0.184  Sum_probs=140.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCc
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (534)
                      +..|.||||.|++.|+.+.++.|++.|.+.+       .+..|.||||.|+..|+.+++++|++.+.  +.+.+|..|.|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~-------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~d~~g~t   72 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-------FNPLPLALLLDSSLEGEFDLVQRIIYEVD--DPSLPNDEGIT   72 (239)
T ss_dssp             ------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS--SCCCCCTTSCC
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc-------cCchhhHHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCC
Confidence            4569999999999999999999999997643       24678999999999999999999999874  56778999999


Q ss_pred             HHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCC-cHHHHH--HHcC
Q 009452          100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGK-TALHSA--ARNG  176 (534)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpLh~A--~~~g  176 (534)
                      |||+|+..|+.+++++|+++++++.. .|..|+||||+|+..|+.+++++|+++|+++. ..+..|. ||||+|  +..|
T Consensus        73 ~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~t~l~~a~~~~~g  150 (239)
T 1ycs_B           73 ALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKCEEMEEG  150 (239)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHCCSSSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCcchHHHHHHhhhc
Confidence            99999999999999999999988654 58999999999999999999999999999984 4555554 999999  7899


Q ss_pred             cHHHHHHHHhcCCCCccc--------CCCCCCcHHHHHHhCCCHHHHHHHhhcCCc-----cccccCCCCCcHHHHH
Q 009452          177 HLEIVKALLSKEPGIVLR--------NDKKGQTALHMAVKGQSIELVDELVKVEPV-----IINMVDAKGNSALHIA  240 (534)
Q Consensus       177 ~~~iv~~Ll~~~~~~~~~--------~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~-----~in~~d~~G~T~Lh~A  240 (534)
                      +.+++++|++.+++....        .+..++++++++++.|.  +++.+.+....     .....+..|.+|.++.
T Consensus       151 ~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv  225 (239)
T 1ycs_B          151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLL  225 (239)
T ss_dssp             CCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGE
T ss_pred             cHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHe
Confidence            999999999987765432        26678999999988886  33334332211     0123455566666654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=2.3e-23  Score=180.58  Aligned_cols=128  Identities=22%  Similarity=0.323  Sum_probs=72.3

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCC-CCcHH
Q 009452           57 KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSS-NTTAL  135 (534)
Q Consensus        57 ~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-g~tpL  135 (534)
                      ..+..|.||||+|+..|+.+++++|++.+  .+.+.++..|.||||+|+. |+.+++++|+++++++... |.. |.|||
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L   82 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-DPATLTRPV   82 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-BTTTTBCHH
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-CCCCCCCHH
Confidence            34555566666666666666666666554  2334455556666666666 6666666666655554332 444 55666


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCC
Q 009452          136 HTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP  189 (534)
Q Consensus       136 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~  189 (534)
                      |+|+..|+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            6666666666666666655554 3445555566666665566666665555544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=1.9e-23  Score=191.31  Aligned_cols=153  Identities=17%  Similarity=0.131  Sum_probs=123.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccc-cCCCcHHHHHHHCCCH----HHHHHHHhhCccccccCCCCCCcHHH
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKA-RNGYDAFHIAAKQGCL----EVLKILMEALPELLMTFDSSNTTALH  136 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpLh  136 (534)
                      +.++|+.|++.|+.+.++.+++.+.    +..+ ..|+||||+|+..|+.    +++++|+++++++... |..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR-TKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC-CTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC-CCCCCcHHH
Confidence            4578888999999888888887652    2233 6688999999988875    4889999888876544 888999999


Q ss_pred             HHHhcCC------HHHHHHHHhcCCCchhhhhcCCC-cHHHHHHHcC-----cHHHHHHHHh-cCCCCcccCCCCCCcHH
Q 009452          137 TASSQGH------VEVVKFLLEKGSTLATIARSNGK-TALHSAARNG-----HLEIVKALLS-KEPGIVLRNDKKGQTAL  203 (534)
Q Consensus       137 ~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~d~~g~t~L  203 (534)
                      +|+..|+      .+++++|+++|+++ +.+|..|. ||||+|+..|     +.+++++|++ +|+++... |..|+|||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~-d~~G~TpL  158 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK-DKWGLTAL  158 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC-CTTSCCHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc-CCCCCCHH
Confidence            9988876      57899999999887 66788888 9999998844     4668899998 88887644 88899999


Q ss_pred             HHHHhCCCHHHHHHHhhc
Q 009452          204 HMAVKGQSIELVDELVKV  221 (534)
Q Consensus       204 h~A~~~~~~~iv~~Ll~~  221 (534)
                      |+|++.|+.+++++|.+.
T Consensus       159 ~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            999999999999888873

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=2.7e-23  Score=184.74  Aligned_cols=140  Identities=21%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             ccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCc-HHHHH
Q 009452           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKT-ALHSA  172 (534)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pLh~A  172 (534)
                      +..|.||||+|+..|+.+++++|+++++++.. .|..|+||||+|+ .|+.+++++|+++|+++ +..+..|.| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence            34455555555555555555555555544332 2555555555553 55555555555555554 344555555 66666


Q ss_pred             HHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHH
Q 009452          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALH  238 (534)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh  238 (534)
                      +..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++ .+.+++.+|..|.||.+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVR-DAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHSS-CC---------------
T ss_pred             HHCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccc
Confidence            6555566666665555554432 5555666666666666666666555 34455555555555554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=2.3e-23  Score=190.84  Aligned_cols=155  Identities=15%  Similarity=0.106  Sum_probs=135.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCH----HHHHHHHHhCCcccccccccCCC
Q 009452           23 DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYV----DMVREMIRYHDTSLAGIKARNGY   98 (534)
Q Consensus        23 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~~g~   98 (534)
                      +.++|+.|++.|+.+.++.++..+.+..       .+..|.||||+|+..|+.    +++++|++.|  .+++.++..|.
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~-------~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G--advn~~d~~g~   76 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDK-------ESVLKSNILYDVLRNNNDEARYKISMFLINKG--ADIKSRTKEGT   76 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCH-------HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT--CCSSCCCTTCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccc-------cccCCCCHHHHHHHcCCcchHHHHHHHHHHCC--CCCCCCCCCCC
Confidence            5689999999999999999998875421       125699999999999985    5999999987  45677899999


Q ss_pred             cHHHHHHHCCC------HHHHHHHHhhCccccccCCCCCC-cHHHHHHhcC-----CHHHHHHHHh-cCCCchhhhhcCC
Q 009452           99 DAFHIAAKQGC------LEVLKILMEALPELLMTFDSSNT-TALHTASSQG-----HVEVVKFLLE-KGSTLATIARSNG  165 (534)
Q Consensus        99 t~Lh~Aa~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~~~~~~~~~~~~g  165 (534)
                      ||||+|+..|+      .+++++|+++++++... |..|+ ||||+|+..+     +.+++++|++ +|+++ ...|..|
T Consensus        77 TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G  154 (186)
T 3t8k_A           77 TLFFPLFQGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWG  154 (186)
T ss_dssp             CTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTS
T ss_pred             cHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCC
Confidence            99999999987      68899999999987654 88999 9999999954     4679999999 99997 7789999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcC
Q 009452          166 KTALHSAARNGHLEIVKALLSKE  188 (534)
Q Consensus       166 ~tpLh~A~~~g~~~iv~~Ll~~~  188 (534)
                      .||||+|+..|+.+++++|.++.
T Consensus       155 ~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          155 LTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             CCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=4.5e-23  Score=183.26  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=105.7

Q ss_pred             hcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCc-HH
Q 009452           57 KMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTT-AL  135 (534)
Q Consensus        57 ~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-pL  135 (534)
                      ..+..|.||||+|+..|+.+++++|++.+  .+.+..+..|.||||+|+ .|+.+++++|++++.++.. .|..|.| ||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-~d~~g~ttpL   82 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPATLTRPV   82 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTTTCCCHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-cCCCCCcHHH
Confidence            44677889999999999999999999876  445667888999999885 8899999999988877544 4888888 99


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHH
Q 009452          136 HTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMA  206 (534)
Q Consensus       136 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  206 (534)
                      |+|+..|+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++|+++... +..|.|+.+-+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-NHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc-CcCcCcccccC
Confidence            9999999999999999998887 567888999999999999999999999998887654 77888877643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=1.7e-22  Score=175.17  Aligned_cols=130  Identities=18%  Similarity=0.229  Sum_probs=109.8

Q ss_pred             ccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcC-CC
Q 009452           88 SLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN-GK  166 (534)
Q Consensus        88 ~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~  166 (534)
                      .+.+..+..|.||||+|+..|+.+++++|++++.++. ..|..|+||||+|+. |+.+++++|+++|+++ ...+.. |.
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~   79 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLT   79 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTB
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCC
Confidence            3456678889999999999999999999999887654 448889999999999 9999999999998887 556777 89


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       167 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                      ||||+|+..|+.+++++|+++++++... |..|.||||+|+..++.+++++|++.
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCCCCC-SSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999999988886544 78899999999999999999998874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=7.5e-22  Score=167.82  Aligned_cols=125  Identities=42%  Similarity=0.635  Sum_probs=80.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHh
Q 009452           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS  140 (534)
Q Consensus        61 ~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  140 (534)
                      +|.||||+|+..|+.+++++|++.+.  ..+..+..|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC--CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHH
Confidence            35666777777777777766666652  3344556666666666666666666666666655432 35666666666666


Q ss_pred             cCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCC
Q 009452          141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP  189 (534)
Q Consensus       141 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~  189 (534)
                      .|+.+++++|+++|+++ ...|..|.||||+|+..|+.+++++|+++|+
T Consensus        78 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            66666666666666665 4455666666666666666666666666654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=6.4e-22  Score=171.48  Aligned_cols=125  Identities=26%  Similarity=0.354  Sum_probs=81.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009452           60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS  139 (534)
Q Consensus        60 ~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  139 (534)
                      ..|.||||+|+..|+.+++++|++.+  .+.+..+..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~   88 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAIGFTPLHLAA   88 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHH
Confidence            44567777777777777777777665  33445566677777777777777777777776665433 3666677777777


Q ss_pred             hcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcC
Q 009452          140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE  188 (534)
Q Consensus       140 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~  188 (534)
                      ..|+.+++++|+++|+++ ...|.+|.||||+|+..|+.+++++|++.|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            777777777777766665 445666667777777666667666666543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=2.1e-21  Score=165.00  Aligned_cols=126  Identities=35%  Similarity=0.541  Sum_probs=114.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHH
Q 009452           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (534)
                      +|.||||.|++.|+.+++++|++.+.+.      +..+..|.||||+|+..|+.+++++|++.+  ...+.++..|.|||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~l   72 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV------NAKDKNGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPL   72 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC------CCcCCCCCcHHHHHHHcCcHHHHHHHHHcC--CCCcccCCCCCcHH
Confidence            5899999999999999999999998763      556889999999999999999999999987  44567888999999


Q ss_pred             HHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 009452          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGST  156 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  156 (534)
                      |+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|+++|++
T Consensus        73 ~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           73 HLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHcChHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999887654 489999999999999999999999999875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=1.1e-21  Score=170.00  Aligned_cols=128  Identities=20%  Similarity=0.291  Sum_probs=113.7

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           18 LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        18 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      -....+.||||+|++.|+.+++++|++.+.+.      +..|..|.||||+|+..|+.+++++|++.+  .+.+..|..|
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~d~~g   80 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV------NAKDEYGLTPLYLATAHGHLEIVEVLLKNG--ADVNAVDAIG   80 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTC
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCC
Confidence            34567889999999999999999999998763      566889999999999999999999999986  4566788899


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG  154 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  154 (534)
                      .||||+|+..|+.+++++|++++++... .|..|.||||+|+..|+.+++++|++.|
T Consensus        81 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           81 FTPLHLAAFIGHLEIAEVLLKHGADVNA-QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcC-cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999888654 4899999999999999999999999875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=6.8e-22  Score=180.56  Aligned_cols=141  Identities=26%  Similarity=0.291  Sum_probs=112.3

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 009452          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (534)
Q Consensus       128 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (534)
                      +..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..|+.+++++|++++++++...+..|+||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3467788888888888888888888 6665 5567778888888888888888888888888776654477888888888


Q ss_pred             hCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhc
Q 009452          208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH  286 (534)
Q Consensus       208 ~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~  286 (534)
                      ..|+.+++++|++ .+.+++.+|.+|+||||+|+..++               ...+.+++++|+..|+.+++++|.++
T Consensus       119 ~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~---------------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          119 GYVRPEVVEALVE-LGADIEVEDERGLTALELAREILK---------------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HTTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHHH---------------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             hcCcHHHHHHHHH-cCCCCcCCCCCCCCHHHHHHHhcc---------------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence            8888888888888 456788888999999999986432               24567899999999999999998764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=8.9e-22  Score=179.78  Aligned_cols=140  Identities=21%  Similarity=0.188  Sum_probs=122.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009452           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (534)
                      +..|.||||+|+..|+.++++.|++ +  .+.+.++..|.||||+|+..|+.+++++|+++++++....+..|+||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            4578899999999999999999998 4  456778899999999999999999999999999887665348899999999


Q ss_pred             HhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q 009452          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL  218 (534)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  218 (534)
                      +..|+.+++++|+++|+++ ...|.+|.||||+|+..++.                  ..+.++|+.|+..|+.+++++|
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence            9999999999999999987 67889999999999875432                  4567899999999999999998


Q ss_pred             hh
Q 009452          219 VK  220 (534)
Q Consensus       219 l~  220 (534)
                      .+
T Consensus       179 ~~  180 (183)
T 3deo_A          179 EG  180 (183)
T ss_dssp             HT
T ss_pred             HH
Confidence            76

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=1.1e-21  Score=187.95  Aligned_cols=169  Identities=18%  Similarity=0.133  Sum_probs=131.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHH
Q 009452           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (534)
                      .+.+++..+...|+.+.+..+...+         ...+..|.||||+|+..|+.++++.|++ +  .+.+.++..|.|||
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L   81 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIA---------ADVVSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTAL   81 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSC---------HHHHHHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHH
T ss_pred             CCccHHHHHHHcCCCcccccccccc---------cccccCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHH
Confidence            3445555555555555444433322         1224568899999999999999999998 4  45667888899999


Q ss_pred             HHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHH
Q 009452          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV  181 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv  181 (534)
                      |+|+..|+.+++++|+++++++....+..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++    
T Consensus        82 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~----  156 (244)
T 3ui2_A           82 LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK----  156 (244)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT----
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh----
Confidence            99999999999999999988876654478999999999999999999999999887 5678889999999985221    


Q ss_pred             HHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          182 KALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       182 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                                    +..+.||||+|+..|+.+++++|++.
T Consensus       157 --------------~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          157 --------------TTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             --------------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence                          35678999999999999999998873

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=5.2e-21  Score=183.17  Aligned_cols=144  Identities=25%  Similarity=0.265  Sum_probs=112.6

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 009452          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (534)
Q Consensus       128 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (534)
                      +..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..|+.+++++|++++++++...+..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3457788888888888888888887 6665 5567778888888888888888888888888776654477888888888


Q ss_pred             hCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcC
Q 009452          208 KGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG  287 (534)
Q Consensus       208 ~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g  287 (534)
                      ..|+.+++++|++ .+.+++.+|..|+||||+|+..+               .+..+.||+++|+..|+.+++++|.+++
T Consensus       120 ~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~---------------~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          120 GYVRPEVVEALVE-LGADIEVEDERGLTALELAREIL---------------KTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHH---------------TTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHH---------------hccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            8888888888888 46778888888888888887522               2356788999999999999999998765


Q ss_pred             CC
Q 009452          288 VP  289 (534)
Q Consensus       288 ~~  289 (534)
                      .+
T Consensus       184 ~~  185 (244)
T 3ui2_A          184 FE  185 (244)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=1.6e-21  Score=169.08  Aligned_cols=124  Identities=24%  Similarity=0.355  Sum_probs=66.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009452           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (534)
                      |..|.||||+|+..|+.+++++|++.+  .+.+.++..|.||||+|+..|+.+++++|++++.++.. .|..|.||||+|
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A   83 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQNDSPLHDA   83 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCGGGCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-cCCCCCCHHHHH
Confidence            455556666666666666666655544  23344455555555555555555555555555544332 255555555555


Q ss_pred             HhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHh
Q 009452          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS  186 (534)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~  186 (534)
                      +..|+.+++++|+++|+++ ...|..|.||||+|+..+..+++++|.+
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            5555555555555555554 4445555555555555555555544443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=2.9e-21  Score=167.39  Aligned_cols=126  Identities=26%  Similarity=0.336  Sum_probs=93.5

Q ss_pred             ccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHH
Q 009452           92 IKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS  171 (534)
Q Consensus        92 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~  171 (534)
                      .+|..|.||||+|+..|+.+++++|++.++++. ..|..|.||||+|+..|+.+++++|+++|+++ ...|..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence            456778888888888888888888888776654 34777888888888888888888888887776 5567777788888


Q ss_pred             HHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       172 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      |+..|+.+++++|+++++++.. .|..|.||||+|+..+..+++++|.+
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC-CCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhhccHHHHHhhccc
Confidence            8888888888888877777654 37777888888877777777666654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=186.05  Aligned_cols=137  Identities=21%  Similarity=0.233  Sum_probs=69.9

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCchhh-----hhcCCCcHHHHHHHc---CcHHHHHHHHhcCCCCcccCCCCCCcHH
Q 009452          132 TTALHTASSQGHVEVVKFLLEKGSTLATI-----ARSNGKTALHSAARN---GHLEIVKALLSKEPGIVLRNDKKGQTAL  203 (534)
Q Consensus       132 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  203 (534)
                      .++|+.|+..|+.+.++.|++.|+++...     .+..|.||||+|+..   |+.+++++|++++++++.. |..|+|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTTCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCCCCCHH
Confidence            34555555555555555555555554221     344555555555554   5555555555555554332 45555555


Q ss_pred             HHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCc
Q 009452          204 HMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGH  276 (534)
Q Consensus       204 h~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~  276 (534)
                      |+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..++.  .++|+..|++      .|.||||+|+..|+
T Consensus       231 h~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence            55555555555555555 3445555555555555555555553  3444444432      35566666555554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=1.2e-20  Score=186.29  Aligned_cols=143  Identities=20%  Similarity=0.173  Sum_probs=113.8

Q ss_pred             ccCCCcHHHHHHHCCCHHHHHHHHhhCcccccc-----CCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCchhhhhcCC
Q 009452           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMT-----FDSSNTTALHTASSQ---GHVEVVKFLLEKGSTLATIARSNG  165 (534)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g  165 (534)
                      ...+.++||.|+..|+.+.++.|++.++++...     .|..|.||||+|+..   |+.+++++|+++|+++ +..|.+|
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G  226 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG  226 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence            344567899999999999999999888876543     478899999999986   8899999999999887 5678889


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCc
Q 009452          166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR  245 (534)
Q Consensus       166 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~  245 (534)
                      .||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..|+.+++++|++....       .|.||||+|+..|+
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSC-CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence            9999999999999999999999888764 488899999999999999999999984332       57899999998775

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=1.6e-20  Score=159.47  Aligned_cols=110  Identities=27%  Similarity=0.369  Sum_probs=65.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009452           60 QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS  139 (534)
Q Consensus        60 ~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  139 (534)
                      ..|.||||+|+..|+.+++++|++.+.  +.+.++..|.||||+|+..|+.+++++|+++++++.. .|..|+||||+|+
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~A~   81 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGE--DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAV   81 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTC--CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCC--CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHH
Confidence            445566666666666666666666542  3444555666666666666666666666666555432 3556666666666


Q ss_pred             hcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHH
Q 009452          140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAA  173 (534)
Q Consensus       140 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~  173 (534)
                      ..|+.+++++|+++|+++ ...|.+|.||||+|.
T Consensus        82 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhC
Confidence            666666666666666554 445556666666663

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=2.4e-20  Score=158.42  Aligned_cols=108  Identities=27%  Similarity=0.281  Sum_probs=50.8

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhC
Q 009452          130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKG  209 (534)
Q Consensus       130 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  209 (534)
                      .|.||||+|+..|+.+++++|++.+.++ ...+..|.||||+|+..|+.+++++|++.++++.. .|..|+||||+|+..
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAVYE   83 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHc
Confidence            3444444444444444444444444443 33344444444444444444444444444444332 244455555555555


Q ss_pred             CCHHHHHHHhhcCCccccccCCCCCcHHHHH
Q 009452          210 QSIELVDELVKVEPVIINMVDAKGNSALHIA  240 (534)
Q Consensus       210 ~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~A  240 (534)
                      |+.+++++|++ .+.+++.+|.+|.||||+|
T Consensus        84 ~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           84 GHVSCVKLLLS-KGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHC
T ss_pred             CCHHHHHHHHH-cCCCCCCcCCCCCCHHHHh
Confidence            55555555554 2334445555555555554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=1.3e-20  Score=177.43  Aligned_cols=173  Identities=20%  Similarity=0.237  Sum_probs=115.8

Q ss_pred             hhhcCCCCCCcHHHHHHHcCCHHHHHHHHHhcC---------ChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 009452           15 KKQLTAKRDDTPLQSLVRTGSVELVLDMISSYG---------DMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYH   85 (534)
Q Consensus        15 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~---------~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~   85 (534)
                      ..-+-+..+.++.+.+++.|+...+..+.+.+-         .......+...+..|.||||+||..|+.+++++|++.+
T Consensus        17 ~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g   96 (222)
T 3ehr_A           17 FRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR   96 (222)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             EEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCC
Confidence            344667788888888888888655543322210         00001334556677788888888888888888888765


Q ss_pred             CcccccccccCCCcHHHHHHHCCCHHHHHHHHhh-CccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcC
Q 009452           86 DTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEA-LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN  164 (534)
Q Consensus        86 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  164 (534)
                        .+.+.++..|.||||+|+..|+.+++++|++. +.++ +..|..|.||||+|+..|+.+++++|+++|+++ ...|.+
T Consensus        97 --~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~  172 (222)
T 3ehr_A           97 --VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIE  172 (222)
T ss_dssp             --CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTT
T ss_pred             --CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCC
Confidence              34556677788888888888888888888877 4443 345777888888888888888888888887776 556777


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCC
Q 009452          165 GKTALHSAARNGHLEIVKALLSKEPGI  191 (534)
Q Consensus       165 g~tpLh~A~~~g~~~iv~~Ll~~~~~~  191 (534)
                      |.||||+|+..|+.++++.|++.+...
T Consensus       173 g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          173 KKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             SCCHHHHCCSHHHHHHHC---------
T ss_pred             CCCHHHHhcchhHHHHHHHHhccchhh
Confidence            888888888878888888777776654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.81  E-value=2.3e-20  Score=175.75  Aligned_cols=123  Identities=28%  Similarity=0.350  Sum_probs=66.8

Q ss_pred             cCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCchhhhhcCCCcHHHHHH
Q 009452           95 RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTALHSAA  173 (534)
Q Consensus        95 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpLh~A~  173 (534)
                      ..|.||||+|+..|+.++++.|++.+.++. ..|..|+||||+|+..|+.+++++|++. |+++ +..|..|.||||+|+
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAA  148 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHH
Confidence            345556666666666666666665555433 2355556666666666666666666655 4444 444555556666665


Q ss_pred             HcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          174 RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       174 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      ..|+.+++++|+++++++.. .|..|+||||+|+..++.++++.|++
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~l~~l~~  194 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDL-RNIEKKLAFDMATNAACASLLKKKQG  194 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCC-CCTTSCCHHHHCCSHHHHHHHC----
T ss_pred             HcCCHHHHHHHHHcCCCCcc-ccCCCCCHHHHhcchhHHHHHHHHhc
Confidence            55555566655555555433 25555555555555555555555554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=3.1e-19  Score=174.10  Aligned_cols=193  Identities=19%  Similarity=0.195  Sum_probs=133.8

Q ss_pred             cccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHH
Q 009452           93 KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (534)
Q Consensus        93 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A  172 (534)
                      .|..+.+.++.+...|+..+.+++....+.........+....+    ....-..+++................++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            45667778888888887766665544333211100011111111    11111222333222221112222345788889


Q ss_pred             HHcCcHHHHHHHHhcCCCCccc-----CCCCCCcHHHHHHhC---CCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcC
Q 009452          173 ARNGHLEIVKALLSKEPGIVLR-----NDKKGQTALHMAVKG---QSIELVDELVKVEPVIINMVDAKGNSALHIATRKG  244 (534)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~---~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~  244 (534)
                      +..|+.+.++.+++.+++....     .|..|+||||+|+..   |+.+++++|++ .+.++|.+|.+|+||||+|+..|
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTD  216 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH-CCCCccccCCCCCCHHHHHHHcC
Confidence            9999999998888888875433     377889999999988   88999999998 46778899999999999999988


Q ss_pred             cH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCC
Q 009452          245 RV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  290 (534)
Q Consensus       245 ~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~  290 (534)
                      +.  .++|+..|++++.+|..|.||||+|+..|+.+++++|+++|+..
T Consensus       217 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          217 NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            86  68888899999999999999999999999999999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=5e-18  Score=165.55  Aligned_cols=120  Identities=23%  Similarity=0.259  Sum_probs=57.7

Q ss_pred             cHHHHHHHCCCHHHHHHHHhhCccccc-----cCCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCchhhhhcCCCcHHH
Q 009452           99 DAFHIAAKQGCLEVLKILMEALPELLM-----TFDSSNTTALHTASSQ---GHVEVVKFLLEKGSTLATIARSNGKTALH  170 (534)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~-----~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh  170 (534)
                      ++|+.|+..|+.+.++.+++.+++...     ..|..|.||||+|+..   |+.+++++|+++|+++ +..|..|.||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence            345555555555555555554444321     1244455555555544   4455555555555444 334444555555


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       171 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      +|+..|+.+++++|+++|+++... |..|.||||+|+..|+.+++++|++
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCc-cCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            555555555555555554443322 4445555555555555555555544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=1.6e-18  Score=175.14  Aligned_cols=147  Identities=19%  Similarity=0.227  Sum_probs=99.0

Q ss_pred             cCCCcHHHHHHHC-CCHHHHHHHHhhCccccccCC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHH
Q 009452           95 RNGYDAFHIAAKQ-GCLEVLKILMEALPELLMTFD--SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHS  171 (534)
Q Consensus        95 ~~g~t~Lh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~  171 (534)
                      ..+.|+||.|+.. |+.++++.|++.++++... |  ..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence            3456788888888 8888888888887776543 4  67888888888888888888888888877 5677788888888


Q ss_pred             HHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCC--ccccccCCCCCcHHHHHHHcC
Q 009452          172 AARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEP--VIINMVDAKGNSALHIATRKG  244 (534)
Q Consensus       172 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~--~~in~~d~~G~T~Lh~Aa~~~  244 (534)
                      |+..|+.+++++|+++++++.. .|..|.||||+|+..++.+++++|+....  ......+..+.|+++++....
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~-~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHHcCcHHHHHHHHHCcCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            8888888888888888877654 37788888888888888888888876432  223345566777777765443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.76  E-value=2.9e-18  Score=137.88  Aligned_cols=90  Identities=40%  Similarity=0.605  Sum_probs=42.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      |.||||+|+..|+.+++++|++.+  .+.+.+|..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARN   78 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHc
Confidence            445555555555555555555443  22333444455555555555555555555544444322 244444455554444


Q ss_pred             CCHHHHHHHHhcC
Q 009452          142 GHVEVVKFLLEKG  154 (534)
Q Consensus       142 g~~~~v~~Ll~~~  154 (534)
                      |+.+++++|+++|
T Consensus        79 ~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           79 GHLEVVKLLLEAG   91 (93)
T ss_dssp             TCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcC
Confidence            4444444444444

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=2e-18  Score=174.48  Aligned_cols=146  Identities=16%  Similarity=0.170  Sum_probs=113.9

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHhCCcccccccc--cCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHH
Q 009452           60 QSGETALYVAAEY-GYVDMVREMIRYHDTSLAGIKA--RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALH  136 (534)
Q Consensus        60 ~~g~T~Lh~Aa~~-g~~~iv~~Ll~~~~~~~~~~~~--~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  136 (534)
                      ..+.|+||.|+.. |+.++++.|++.+.+.  +..+  ..|.||||+|+..|+.+++++|+++++++. ..|..|+||||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv--n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh  273 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADV--NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLH  273 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCC--CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHH
Confidence            4567899999999 9999999999988544  4455  889999999999999999999999998876 45999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCc--ccCCCCCCcHHHHHHhC
Q 009452          137 TASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV--LRNDKKGQTALHMAVKG  209 (534)
Q Consensus       137 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~d~~g~t~Lh~A~~~  209 (534)
                      +|+..|+.+++++|+++|+++ ...|.+|.||||+|+..|+.+++++|+..+....  ...+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            999999999999999999998 6788999999999999999999999998764322  12345677887776543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.76  E-value=4.5e-18  Score=136.74  Aligned_cols=93  Identities=48%  Similarity=0.712  Sum_probs=80.3

Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHc
Q 009452           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN  175 (534)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  175 (534)
                      +|+||||+|+..|+.+++++|++.++++.. +|..|+||||+|+..|+.+++++|+++|+++ ...|.+|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            478999999999999999999998887654 4888999999999999999999999999887 66788899999999999


Q ss_pred             CcHHHHHHHHhcCCC
Q 009452          176 GHLEIVKALLSKEPG  190 (534)
Q Consensus       176 g~~~iv~~Ll~~~~~  190 (534)
                      |+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999988764

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.75  E-value=3.5e-18  Score=180.75  Aligned_cols=120  Identities=23%  Similarity=0.251  Sum_probs=57.4

Q ss_pred             cHHHHHHHCCCHHHHHHHHhhCcccccc-----CCCCCCcHHHHHHh---cCCHHHHHHHHhcCCCchhhhhcCCCcHHH
Q 009452           99 DAFHIAAKQGCLEVLKILMEALPELLMT-----FDSSNTTALHTASS---QGHVEVVKFLLEKGSTLATIARSNGKTALH  170 (534)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh  170 (534)
                      +.||.|+..|+.+.++.|++.+++++..     .|..|.||||+||.   .|+.+++++|+++|+++ +..|.+|.||||
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpLh  212 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALH  212 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHHH
T ss_pred             HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHHH
Confidence            4455555555555555555444443211     13445555555533   44555555555555444 334444555555


Q ss_pred             HHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          171 SAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       171 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      +|+..|+.+++++|+++|+++... |..|+||||+|+..|+.+++++|++
T Consensus       213 ~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll~  261 (497)
T 3lvq_E          213 YAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEELLEQ  261 (497)
T ss_dssp             HHTTTTCHHHHHHHHHTCCCCSCC-CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            555555555555555555444322 4455555555555555555555554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.72  E-value=8.6e-18  Score=140.68  Aligned_cols=106  Identities=37%  Similarity=0.475  Sum_probs=58.6

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 009452          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (534)
Q Consensus       128 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (534)
                      |.+|+||||+|+..|+.+++++|+++++++ ...|..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+|+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~tpl~~A~   83 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHLAK   83 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-CCTTCCCTTHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHHH
Confidence            555555555555555555555555555554 33455555666666655556666666555555432 2455566666666


Q ss_pred             hCCCHHHHHHHhhcCCccccccCCCCCcH
Q 009452          208 KGQSIELVDELVKVEPVIINMVDAKGNSA  236 (534)
Q Consensus       208 ~~~~~~iv~~Ll~~~~~~in~~d~~G~T~  236 (534)
                      ..++.+++++|++ .+.++|.++..|.||
T Consensus        84 ~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDA-KGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHT-TSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHH-cCCCCCcCCcccccc
Confidence            6666666666555 344555555555554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.72  E-value=1.1e-17  Score=139.96  Aligned_cols=107  Identities=25%  Similarity=0.379  Sum_probs=64.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009452           58 MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHT  137 (534)
Q Consensus        58 ~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  137 (534)
                      +|.+|.||||+|+..|+.+++++|++.+  .+.+..+..|.||||+|+..|+.+++++|+++++++.. .|..|.||||+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~tpl~~   81 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHL   81 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-CCTTCCCTTHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHH
Confidence            3556666666666666666666666654  23444556666666666666666666666666655432 35566666666


Q ss_pred             HHhcCCHHHHHHHHhcCCCchhhhhcCCCcH
Q 009452          138 ASSQGHVEVVKFLLEKGSTLATIARSNGKTA  168 (534)
Q Consensus       138 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  168 (534)
                      |+..|+.+++++|+++|+++ +..+..|.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence            66666666666666666665 4445555554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.60  E-value=1.8e-15  Score=125.50  Aligned_cols=89  Identities=35%  Similarity=0.531  Sum_probs=49.0

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 009452          128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAV  207 (534)
Q Consensus       128 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  207 (534)
                      |.+|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++++++.. .|..|+||||+|+
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~   98 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISI   98 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCcHHHHHH
Confidence            455555555555555555555555555554 33455555555555555555555555555555432 2455555555555


Q ss_pred             hCCCHHHHHHH
Q 009452          208 KGQSIELVDEL  218 (534)
Q Consensus       208 ~~~~~~iv~~L  218 (534)
                      ..|+.+++++|
T Consensus        99 ~~~~~~~~~~L  109 (110)
T 2zgd_A           99 DNGNEDLAEIL  109 (110)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence            55555555544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.60  E-value=2.5e-15  Score=124.65  Aligned_cols=93  Identities=30%  Similarity=0.380  Sum_probs=58.7

Q ss_pred             HHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcH
Q 009452           55 LSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTA  134 (534)
Q Consensus        55 l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  134 (534)
                      ....+.+|.||||+|+..|+.+++++|++.+  .+.+.+|..|.||||+|+..|+.+++++|+++++++.. .|..|.||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tp   93 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTA   93 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCcH
Confidence            4455666777777777777777777777665  33445566677777777777777777777776665433 36666777


Q ss_pred             HHHHHhcCCHHHHHHH
Q 009452          135 LHTASSQGHVEVVKFL  150 (534)
Q Consensus       135 Lh~A~~~g~~~~v~~L  150 (534)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            7777777776666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	534
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-30
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-23
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-25
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-19
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-18
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	7e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	7e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 2e-30
 Identities = 69/283 (24%), Positives = 124/283 (43%), Gaps = 23/283 (8%)

Query: 20  AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
           A  D+  L   V+   V+LV  ++    ++  +E      + G T L+ A +    D+V 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIVE 56

Query: 80  EMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139
            ++R+       ++ +NG   F +AA  G +++LK+ +      +   D    TA   A+
Sbjct: 57  LLLRHGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAA 113

Query: 140 SQGHVEVVKFLLEKGSTL---------ATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
             G V+ +KFL ++G+ +             R  G TAL  AA  GH+E++K LL +   
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 191 IVLRNDKKGQTALHMAVKGQSIELVDELVKV---EPVIINMVDAKGNSALHIATRKGR-- 245
            V   D  G+ AL  A+       V+ +  +       +N+   +G + L +A  K    
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 246 -VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
            VQ+LL    ++    +   +TAL  A +    +I  +L + G
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 2e-20
 Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 8/188 (4%)

Query: 7   QQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELR----EMLSKMNQSG 62
           +    K            T        G V+ +  +     ++ LR    E   ++ + G
Sbjct: 89  KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 63  ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
            TAL  AAE G+V++++ ++      +       G +A   A        ++ +   L +
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 123 L---LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE 179
               +        T L  A  + H+ +V+ LLE+         S+GKTAL  A      +
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

Query: 180 IVKALLSK 187
           I + L  +
Sbjct: 268 IAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 2e-13
 Identities = 41/206 (19%), Positives = 67/206 (32%), Gaps = 48/206 (23%)

Query: 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL----- 185
           +   L  A     V++V+ LLE G+ +       G T LH+A +    +IV+ LL     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 186 ---------------------------SKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
                                        +   V   D  G TA   A     ++ +  L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 219 VKVEP---------VIINMVDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKS--- 263
            K                 +   G +AL  A  KG    ++ LL+  G D    +     
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 264 -RETALDTAEKTGHSEIGVILKEHGV 288
               AL +++ +    I  +L +HG 
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGA 210

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV 215
           A       L  A +N  +++V+ LL     +  + ++ G T LH AV+    ++V
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-28
 Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 45/298 (15%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
           TPL      G + +V +++       +       N   ET L++AA  G+ ++ + +++ 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVS------NVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTF----------------- 127
              +    KA++     H AA+ G   ++K+L+E      +                   
Sbjct: 56  K--AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 113

Query: 128 ---------------DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA 172
                               T LH A+  G V V + LLE+ +     A  NG T LH A
Sbjct: 114 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVA 172

Query: 173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAK 232
             + +L+IVK LL +           G T LH+A K   +E+   L++           +
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQ 230

Query: 233 GNSALHIATRKGR--VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 288
           G + LH+A ++G   +  LL     +  + NKS  T L    + GH  +  +L +HGV
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 288

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 2e-26
 Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 14/267 (5%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
           K+  TPL    + G V +   ++                ++G T L+VA  +  +D+V+ 
Sbjct: 130 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAA------GKNGLTPLHVAVHHNNLDIVKL 183

Query: 81  MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS 140
           ++    +  +   A NGY   HIAAKQ  +EV + L++              T LH A+ 
Sbjct: 184 LLPRGGSPHS--PAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQ 240

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQ 200
           +GH E+V  LL K +    +   +G T LH  A+ GH+ +   L+     +V    + G 
Sbjct: 241 EGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGV-MVDATTRMGY 298

Query: 201 TALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKA 258
           T LH+A    +I+LV + +      +N     G S LH A ++G      LL  NG    
Sbjct: 299 TPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 357

Query: 259 VINKSRETALDTAEKTGHSEIGVILKE 285
            ++    T L  A++ G+  +  +LK 
Sbjct: 358 EVSSDGTTPLAIAKRLGYISVTDVLKV 384

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 4e-24
 Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 37/225 (16%)

Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
             H+A+  G L ++K L++      ++ +    T LH A+  GH EV K+LL+  + +  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKV-N 60

Query: 160 IARSNGKTALHSAARNGHLEIVKALLSKEPGI---------------------------- 191
               + +T LH AAR GH  +VK LL                                  
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 192 ----VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR-- 245
                    KKG T LH+A K   + + + L++ +    N     G + LH+A       
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 246 VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 290
           + KLL   G        +  T L  A K    E+   L ++G   
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 224

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 7e-23
 Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 8/249 (3%)

Query: 42  MISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF 101
           + +    +E     + M + G T L+VAA+YG V +   ++     +      +NG    
Sbjct: 112 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPL 169

Query: 102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIA 161
           H+A     L+++K+L+            +  T LH A+ Q  VEV + LL+ G + A   
Sbjct: 170 HVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAE 227

Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
              G T LH AA+ GH E+V  LLSK+    L  +K G T LH+  +   + + D L+K 
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIK- 285

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
             V+++     G + LH+A+  G ++  K L  +  D     K   + L  A + GH++I
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 345

Query: 280 GVILKEHGV 288
             +L ++G 
Sbjct: 346 VTLLLKNGA 354

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  104 bits (260), Expect = 3e-25
 Identities = 47/265 (17%), Positives = 81/265 (30%), Gaps = 40/265 (15%)

Query: 21  KRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVRE 80
            + +        TG     LD +     +   E++  +      A  +AAE G++ ++  
Sbjct: 88  IKSEVICFVAAITGCSS-ALDTLCLL--LTSDEIVKVIQAENYQAFRLAAENGHLHVLNR 144

Query: 81  MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME--ALPELLMTFDSSNTTALHTA 138
           +     T +  +     Y AF +AA+ G L VL  L E        M    +       A
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 204

Query: 139 SSQGHVEVVKFLLEKGSTLAT---IARSNG------------------KTALHSAARNGH 177
             +GH  V+ FLL+    LA         G                    A   +  +G 
Sbjct: 205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 264

Query: 178 LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI----INMVDAKG 233
            ++V                     L        ++ +  L+ +  +        +    
Sbjct: 265 FDLVTKSECL-------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 317

Query: 234 NSALHIATRKGR---VQKLLNINGV 255
           N  L +A R G       LL+I  V
Sbjct: 318 NELLRLALRLGNQGACALLLSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 90.7 bits (224), Expect = 2e-20
 Identities = 39/272 (14%), Positives = 82/272 (30%), Gaps = 20/272 (7%)

Query: 18  LTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDM 77
           +    +D  L+ +       L    IS+         L  ++      +++        +
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISAN-----ELSLMTLSYKEAIHIFLPGTKNMEQV 61

Query: 78  VREMIRYHDTSLAG---------IKARNGYDAFHIAAKQGCLEVLKILMEALP--ELLMT 126
            + +  Y+                K         +AA  GC   L  L   L   E++  
Sbjct: 62  RQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV 121

Query: 127 FDSSNTTALHTASSQGHVEVVKFLLEKG-STLATIARSNGKTALHSAARNGHLEIVKALL 185
             + N  A   A+  GH+ V+  L E   + +  + ++    A   AA NGHL ++  L 
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

Query: 186 SKEPGIVLR--NDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK 243
              P         +        AV      +++ L+     ++   +             
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-MLAYAEIHEFEYGEKYVNP 240

Query: 244 GRVQKLLNINGVDKAVINKSRETALDTAEKTG 275
              + +  +  +  A    + +   D   K+ 
Sbjct: 241 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSE 272

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.5 bits (200), Expect = 2e-17
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 18/157 (11%)

Query: 40  LDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD 99
                  G   +   L         A     EYG   +   + R+ +           +D
Sbjct: 201 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK------EMHD 254

Query: 100 AFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT 159
           AF ++   G  +++          ++         L   + +  ++ ++FLL      A 
Sbjct: 255 AFKLSNPDGVFDLVTKSECLQGFYMLR-------NLIRRNDEVLLDDIRFLLSIPGIKAL 307

Query: 160 IARS----NGKTALHSAARNGHLEIVKALLSKEPGIV 192
              +    +    L  A R G+      LLS  P ++
Sbjct: 308 APTATIPGDANELLRLALRLGNQGACALLLSI-PSVL 343

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.9 bits (118), Expect = 4e-07
 Identities = 20/168 (11%), Positives = 34/168 (20%), Gaps = 29/168 (17%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           +  N   L          + +  +                 +         ++ + L   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ 247
                 RN K+  +  H                           K      +A   G   
Sbjct: 69  YAHYN-RNAKQLWSDAHKK-----------------------GIKSEVICFVAAITGCSS 104

Query: 248 -----KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 290
                 LL  +     VI      A   A + GH  +   L E     
Sbjct: 105 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 5e-20
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 8/222 (3%)

Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           +   A  G ++ ++E I     SLA    ++   A H A   G  E+++ L++    +  
Sbjct: 7   VCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             D+  +  LH A+S G  E+VK LL KG+ +      NG T LH AA     EI   LL
Sbjct: 66  KDDAGWSP-LHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
                   + D    TA+H A    +++++  L+  +    N+ D +GN+ LH+A  + R
Sbjct: 124 EGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEER 181

Query: 246 VQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE 285
           V+  KLL   G    + NK  +T L  A+  G   I   + E
Sbjct: 182 VEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 1e-19
 Identities = 46/231 (19%), Positives = 99/231 (42%), Gaps = 15/231 (6%)

Query: 23  DDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMI 82
            +  + +L  +G +E + + I +   +      ++ +Q   TAL+ A   G+ ++V  ++
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSL-----ATRTDQDSRTALHWACSAGHTEIVEFLL 57

Query: 83  RYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQG 142
           +          A         +A +  +    +   A        + +  T LH A+S+ 
Sbjct: 58  QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN---AVNQNGCTPLHYAASKN 114

Query: 143 HVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA 202
             E+   LLE G+           TA+H AA  G+L+++  LL  +    ++ D +G T 
Sbjct: 115 RHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTP 172

Query: 203 LHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---VQKLL 250
           LH+A   + +E    LV  +   I + + +  + L +A + G    +++++
Sbjct: 173 LHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 1e-13
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 36/193 (18%)

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNG------------- 176
           SN   +   +  G +E +K  +    +LAT    + +TALH A   G             
Sbjct: 3   SNLM-VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 61

Query: 177 -------------------HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDE 217
                                + +   L  +   V   ++ G T LH A      E+   
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 218 LVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTG 275
           L++      +  D    +A+H A  KG +    +L        + +    T L  A    
Sbjct: 122 LLEGG-ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 180

Query: 276 HSEIGVILKEHGV 288
             E   +L   G 
Sbjct: 181 RVEEAKLLVSQGA 193

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.7 bits (205), Expect = 6e-19
 Identities = 49/235 (20%), Positives = 87/235 (37%), Gaps = 9/235 (3%)

Query: 24  DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
           + PL           V +++ S   +     L + +Q G   L+ +  +   ++   ++ 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 84  YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNT--TALHTASSQ 141
             +         +        A       +   +   P        +N   T LH A  +
Sbjct: 56  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 115

Query: 142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQT 201
              EV +FL+E G++   I     +  LH AA  G L++++ L       V   DK+G T
Sbjct: 116 KWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 174

Query: 202 ALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVD 256
            L  A+     +    LV+      ++VD KG  A  +A  +   +  LN N VD
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLN-NVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 6e-14
 Identities = 39/231 (16%), Positives = 80/231 (34%), Gaps = 11/231 (4%)

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
             L+ A        V+E++     SL   K ++G    H +      E+   L+  +  +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLL---EKGSTLATIARSNGKTALHSAARNGHLEI 180
            +     ++       +     +                   + G T LH A      E+
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 181 VKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA 240
            + L+     + ++ DK  Q  LH A    S++L++ L  +    +N  D +G + L  A
Sbjct: 121 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 241 TRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 288
             +G       L+   G +  +++     A D A    + ++      + V
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 3/60 (5%)

Query: 234 NSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC 290
           N  LH A  +     VQ+LL+         ++     L  +      EI   L       
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.2 bits (204), Expect = 1e-18
 Identities = 43/250 (17%), Positives = 81/250 (32%), Gaps = 16/250 (6%)

Query: 55  LSKMNQSGETALYVAAEYGYVDMVREMIRYH-DTSLAGIKARNGYDAFHIAAKQGCLEVL 113
              + + G+TAL++A  + +   +  ++ +        ++   G  A H+AA  G    +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 114 KILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG------------STLATIA 161
           + L  A   +L+     +T   H A           LL+              +      
Sbjct: 62  EKLYAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
                      ++       +         +   +  G T LH+AV  +  E+V  L   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
              +       G + LH+A         +LL   G D         T L +A    +  +
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240

Query: 280 GVILKEHGVP 289
             +L+ HG P
Sbjct: 241 ARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (179), Expect = 3e-15
 Identities = 51/251 (20%), Positives = 88/251 (35%), Gaps = 22/251 (8%)

Query: 24  DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
           DT L   V       +  ++      E    L   N  G+TAL++AA  G    V ++  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 84  YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE-------------LLMTFDSS 130
                   +  R G+ A H+A +        +L++  P                 T D+S
Sbjct: 67  AGAGV--LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 131 NTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           +  A   +      E      +    L      +G T LH A  +   E+V+ L      
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 191 IVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--K 248
           +       G+T LH+AV+ Q+  +++ L+K            G + L  A  +      +
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILAR 242

Query: 249 LLNINGVDKAV 259
           LL  +G  +  
Sbjct: 243 LLRAHGAPEPE 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 4e-11
 Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 12/206 (5%)

Query: 164 NGKTALHSAARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKV 221
           +G TALH A  + H   +  LL    G    +  +  GQTALH+A        V++L   
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 222 EPVIINMVDAKGNSALHIATRKGR---VQKLLNING-VDKAVINKSRETALDTAEKTGHS 277
              ++        +  H+A R         LL       +   +     + D    T H+
Sbjct: 68  GAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 278 EIGVILKEHG----VPCGKSIKPQANSARELKQAVSDIKHEVHDQLEHTRETRKHVHGIA 333
              V  + +      P  +  + Q  +          +     D                
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 334 KRINKMHTEGLNNA-INSTTVVAVLI 358
                  T         + +V+ +L+
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLL 212

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 1e-17
 Identities = 32/251 (12%), Positives = 83/251 (33%), Gaps = 21/251 (8%)

Query: 5   SEQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGET 64
                +    +       +         +   E+     ++  ++ +      +++ G T
Sbjct: 55  PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI-----PVDEHGNT 109

Query: 65  ALYVAAEYGYVDMVREMIRY-HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
            L+       +++V+ ++++  +         +       +         + L++ L   
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 124 LMTFDSSNTTALH----TASSQGHVEVVK--------FLLEKGSTLATIARSNGKTALHS 171
           L+  DS N T LH    T+   G     K        ++++K +       +  ++  + 
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 172 AARNGHLEIVKALLSKEPGIVLRN--DKKGQTALHMAVKGQSIELVDELVKVEPVIINMV 229
                   I++ L  K     + N  D  G T L++A +  +I +VD L+        + 
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIA 288

Query: 230 DAKGNSALHIA 240
           +  G   +   
Sbjct: 289 NKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.0 bits (188), Expect = 4e-16
 Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 52/231 (22%)

Query: 93  KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
              +     H++      EV          L +  D    T LH  +S  ++E+VK L++
Sbjct: 69  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

Query: 153 KGS----------TLATIAR--------------------------SNGKTALHSAARNG 176
            GS          +    A                           S  +T LH      
Sbjct: 129 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS 188

Query: 177 H-----------LEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI 225
                       L+I+   + K+    +++    + +      G+  + + E + ++ +I
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 226 ---INMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTA 271
              +N  D+ G++ L+IA R G +     L   G D  + NKS    +D  
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 30/173 (17%), Positives = 49/173 (28%), Gaps = 19/173 (10%)

Query: 129 SSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKE 188
           SSN    H +      EV          L      +G T LH      +LE+VK L+   
Sbjct: 71  SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130

Query: 189 PGIVLRNDKKGQTALHMAVKGQ---SIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
               L  D  G++ L  AVK          + L+      + + D+   + LH       
Sbjct: 131 SN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 189

Query: 246 ---------------VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL 283
                          +  ++             +E+  +         I   L
Sbjct: 190 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 242

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 41/243 (16%), Positives = 74/243 (30%), Gaps = 15/243 (6%)

Query: 130 SNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP 189
                L         E+   L    S   +   S+ +   H +  +   E+  A  + + 
Sbjct: 38  KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 97

Query: 190 GIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR---- 245
            + +  D+ G T LH      ++ELV  LVK         D  G S L  A +       
Sbjct: 98  NLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDS 156

Query: 246 --VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSI---KPQANS 300
              + LL+       + +    T L     T          ++ +         K     
Sbjct: 157 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 216

Query: 301 ARELKQAVSDIKHEVHDQLEHTRETRKHVHGIAKRINKMHTEG---LNNAI--NSTTVVA 355
                +  S    +  ++ +   E       IA  +N   + G   LN A    + ++V 
Sbjct: 217 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 276

Query: 356 VLI 358
            L+
Sbjct: 277 ALL 279

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 8e-07
 Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 2/127 (1%)

Query: 162 RSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV 221
           +   +  L         E+  +L +             Q   H++      E+ D     
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 222 EPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
           +  +   VD  GN+ LH  T    ++  K L  +G ++   +   E+ L  A K+ ++  
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 155

Query: 280 GVILKEH 286
               +  
Sbjct: 156 SGTFEAL 162

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 75.2 bits (183), Expect = 1e-15
 Identities = 43/263 (16%), Positives = 90/263 (34%), Gaps = 27/263 (10%)

Query: 43  ISSYGDMELREMLSKM------NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA-- 94
             + G   + E +++        +   T L+  A     +   ++I +         A  
Sbjct: 8   TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 67

Query: 95  ----RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
                +      +A       ++  LM+A  +    ++ S  +ALH A++     ++ ++
Sbjct: 68  NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYM 126

Query: 151 LEKGSTLATIARSNGKTALHS--AARNGH----------LEIVKALLSKEPGIVLRNDKK 198
           L        I   +          A N            +E    +             K
Sbjct: 127 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 186

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVD 256
           G+TALH A +  ++ +V  LV  +    +  D  G + + +A ++GR++    L   G  
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 246

Query: 257 KAVINKSRETALDTAEKTGHSEI 279
              ++ +  TA   A+   H  I
Sbjct: 247 VEAVDATDHTARQLAQANNHHNI 269

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 73.2 bits (178), Expect = 5e-15
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 72  YGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN 131
              +      + Y   +    +   G  A H AA+   + ++K L+          D   
Sbjct: 162 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDG 221

Query: 132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
            T +  A+ +G +EVV +L+++G+++     +   TA   A  N H  IV    
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 66.7 bits (161), Expect = 9e-13
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
                TALH A+   ++ +VK+L+ +  +       +GKT +  AA+ G +E+V  L+ +
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVK 220
              +    D    TA  +A       +VD   +
Sbjct: 244 GASVEAV-DATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             LHT ++ G   + + +  +   +  I   + +T LH  A N   E  + L+  E    
Sbjct: 4   IKLHTEAA-GSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 193 LRN-------DKKGQTALHMAVKGQSIE 213
           +         D    T L +AV  +   
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 40/248 (16%), Positives = 81/248 (32%), Gaps = 25/248 (10%)

Query: 63  ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPE 122
           E+ + +  E      + E I     ++  I  R+     H  A     E  + L+    +
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 123 LL-------MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN 175
                       D    T L  A       +V +L++ G+      +S      H AA N
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAAN 117

Query: 176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS------------IELVDELVKVEP 223
               ++  +L+         +        + +   +            +E   ++     
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 224 VIINMVDAKGNSALHIATRKGR---VQKLLNINGVDKAVINKSRETALDTAEKTGHSEIG 280
              +    KG +ALH A +      V+ L+   G +K   ++  +T +  A + G  E+ 
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 281 VILKEHGV 288
           + L + G 
Sbjct: 238 MYLIQQGA 245

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 17/115 (14%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 7   QQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETAL 66
           +       +K     +  T L    +  ++ +V  ++   G  + ++     ++ G+T +
Sbjct: 171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-----DEDGKTPI 225

Query: 67  YVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEA 119
            +AA+ G +++V  +I+      A ++A +   + A  +A       ++ I    
Sbjct: 226 MLAAQEGRIEVVMYLIQQG----ASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 6   EQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETA 65
           +     K   K    +   TP+    + G +E+V+ +I     +E        + +  TA
Sbjct: 204 KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV------DATDHTA 257

Query: 66  LYVAAEYGYVDMVREMIRY 84
             +A    + ++V    R 
Sbjct: 258 RQLAQANNHHNIVDIFDRC 276

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 7e-15
 Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEA 119
           G+T L++A   G +  V  ++         +   N       H+A       V+++L+ A
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS---TLATIARSNGKTALHSAARNG 176
               +       T A H A        ++ LL+  +           +G TALH A    
Sbjct: 63  GASPMALDRHGQTAA-HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 177 HLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSA 236
             E V+ LL +   I   + K G++ L  AV+  S+  + +L+      +N     G+SA
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS-MVQLLLQHGANVNAQMYSGSSA 180

Query: 237 LHIATRKGRVQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
           LH A+ +G +   + L  +G D ++ N   +T L  A      +I
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 1e-11
 Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 58  MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
            N  G TAL+VA      + V+ ++      +  +  ++G      A +   L ++++L+
Sbjct: 106 RNYDGLTALHVAVNTECQETVQLLLERGA-DIDAVDIKSGRSPLIHAVENNSLSMVQLLL 164

Query: 118 EALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGH 177
           +     +     S ++ALH+AS +G + +V+ L+  G+   ++   +  T L  A     
Sbjct: 165 QH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRV 222

Query: 178 LEIVK 182
           ++I++
Sbjct: 223 IDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 4e-11
 Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 39/227 (17%)

Query: 24  DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
           DTPL   V  G++  V  +++ +   +    L   N   +T L++A       +VR ++ 
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLF--QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 84  YHDTS-----------------------------------LAGIKARNGYDAFHIAAKQG 108
              +                                        +  +G  A H+A    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 109 CLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA 168
           C E +++L+E   ++      S  + L  A     + +V+ LL+ G+        +G +A
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSA 180

Query: 169 LHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV 215
           LHSA+  G L +V+ L+       L+ +    T L +A   + I+++
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 164 NGKTALHSAARNGHLEIVKALLS--KEPGI-VLRNDKKGQTALHMAVK 208
           +G T LH A   G+L  V  L++  ++ G  +   +   QT LH+AV 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 26  PLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
            L S    G + LV  ++ S  D  L+      N   +T L VA     +D++R
Sbjct: 180 ALHSASGRGLLPLVRTLVRSGADSSLK------NCHNDTPLMVARSRRVIDILR 227

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.9 bits (172), Expect = 4e-14
 Identities = 63/285 (22%), Positives = 112/285 (39%), Gaps = 20/285 (7%)

Query: 6   EQQQSWKKMKKQLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETA 65
           + +    K KK      D     +   +G  E VL ++    D+         N  G TA
Sbjct: 23  DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA------NVDGLTA 76

Query: 66  LYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLM 125
           L+ A     VDMV+ ++              G+   H AA  G L++ + L+      + 
Sbjct: 77  LHQACIDDNVDMVKFLVENGANI--NQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVG 133

Query: 126 TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL 185
             +S   T L  A  +   E+++  + +       AR   +  +   AR          L
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW--------L 185

Query: 186 SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR 245
           +      +R+ K G TALH+A      E++  L++     +N+ D  G + LH A   G+
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 246 VQ--KLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGV 288
            +  ++L  N  D   +NK  +TA D A++     +  + K+  +
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.4 bits (163), Expect = 5e-13
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
             S  TALH A+++G+ EV+K L++    +  I   +G T LH+AA  G  E  + L+  
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 188 EPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVI 225
              +    +K GQTA  +A +   +  ++EL K + ++
Sbjct: 255 LCDMEAV-NKVGQTAFDVADE-DILGYLEELQKKQNLL 290

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 1e-13
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 11/220 (5%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARN--GYDAFHIAAKQGCLEVLKILMEA 119
           G++ L++A  +    +  E+IR     LA +  +N       H+A      E+ + L+ A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 120 LPELLMTFDSSNTTALHTAS----SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARN 175
             +  +     NT           +   V           ++      NG T LH A+ +
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNS 235
           G+L IV+ L+S    +  +    G+TALH+AV  Q+ +LV  L+K     +N V  +G S
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYS 180

Query: 236 ALHIATRKG--RVQKLLNINGVDKAVI--NKSRETALDTA 271
              +   +   R+Q+ L    ++   +      E + DT 
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 2e-12
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 6/210 (2%)

Query: 24  DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIR 83
           D+ L   +      L +++I           L+  N   +T L++A      ++   ++ 
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 84  YHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMT---FDSSNTTALHTASS 140
                       N                +       P L       + +  T LH AS 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQ 200
            G++ +V+ L+  G+ +      NG+TALH A    + ++V  LL     +      +G 
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGY 179

Query: 201 TALHMAVKGQSIELVDELVKVEPVIINMVD 230
           +   +     S  +  +L ++    + M+ 
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 30/209 (14%), Positives = 62/209 (29%), Gaps = 9/209 (4%)

Query: 96  NGYDAFHIAAKQGCLEVLKILMEALPE---LLMTFDSSNTTALHTASSQGHVEVVKFLLE 152
           +G    H+A       +   ++  +      L   ++   T LH A      E+ + LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 153 KGSTLATIARSNGKTALHSAA----RNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK 208
            G                +       +  +            I+   +  G T LH+A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 209 GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNI--NGVDKAVINKSRET 266
              + +V+ LV +   +       G +ALH+A        +  +   G D   +     +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 267 ALDTAEKTGHSEIGVILKEHGVPCGKSIK 295
                     + I   L +  +   + + 
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 58  MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILM 117
              +G TAL++A +    D+V  +++    +        GY  + +   +    + + L 
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSLLLKCG--ADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 198

Query: 118 EALPE-LLMTFDSSNTTALHTAS 139
           +   E L M  +S +  +  T S
Sbjct: 199 QLTLENLQMLPESEDEESYDTES 221

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 59.0 bits (141), Expect = 1e-10
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 12/219 (5%)

Query: 35  SVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKA 94
           + +++ D+++   ++      + M+++GET+L++AA +   D  + ++     + +    
Sbjct: 1   TAQVISDLLAQGAELN-----ATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNT 55

Query: 95  RNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKG 154
                   +A     + V +IL+      L       TT L  A+      +V+ L+   
Sbjct: 56  GRTPLHAAVA--ADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 113

Query: 155 STLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIEL 214
           + +   A ++GKTALH AA   + E V  LL        + D K +T L +A +  S E 
Sbjct: 114 ADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEA 171

Query: 215 VDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLN 251
              L+        + D        +A+ +      +LL+
Sbjct: 172 SKALLD-NFANREITDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 39/203 (19%), Positives = 70/203 (34%), Gaps = 35/203 (17%)

Query: 111 EVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALH 170
           +V+  L+    EL  T D +  T+LH A+     +  K LL+ G+   +   +       
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 171 SAARNGHL--------------------------------EIVKALLSKEPGIVLRNDKK 198
           + A +                                   E +   L      +   D  
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLLNINGVD 256
           G+TALH A    + E V+  + +     +  D K  + L +A R+G  +  K L  N  +
Sbjct: 123 GKTALHWAAAVNNTEAVNI-LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN 181

Query: 257 KAVINKSRETALDTAEKTGHSEI 279
           + + +       D A +  H +I
Sbjct: 182 REITDHMDRLPRDVASERLHHDI 204

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 12/137 (8%)

Query: 163 SNGKTALHS---AARNGHLEIVKALLSK-----EPGIVLRNDKKGQTALHMAVK---GQS 211
           ++    LHS   A +   +  +    +      E   +    +  +TALH+AV+     S
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 212 IELVDELVKVEP-VIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDT 270
           + +VD LV+    +                T      KLL        + N+S ET LD 
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 271 AEKTGHSEIGVILKEHG 287
           A++  H     +L +  
Sbjct: 121 AKRLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 37/171 (21%)

Query: 23  DDTPLQSL---VRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVR 79
               L SL   V+T  +  +L   +   D+  +  L+  ++  ETAL++A          
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV------ 56

Query: 80  EMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTAS 139
                                      +  L ++  L++    L       +T   +   
Sbjct: 57  --------------------------DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL 90

Query: 140 SQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPG 190
           +     +   L  K S    IA  +G+T L  A R  H    + L     G
Sbjct: 91  TDNAECLKLLLRGKASI--EIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 5e-09
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 4/125 (3%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP 121
               L  AA  G V+ VR ++       A   A N Y    I         +  L+    
Sbjct: 3   SADWLATAAARGRVEEVRALLEAG----ANPNAPNSYGRRPIQVMMMGSARVAELLLLHG 58

Query: 122 ELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV 181
                 D +  T     +++        +L +      +  + G+  +  A   GH ++ 
Sbjct: 59  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 182 KALLS 186
           + L +
Sbjct: 119 RYLRA 123

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 7e-09
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
             L  ++  G  D+V+ +I   D         +        A       +   +      
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVN 59

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTA--LHSAARNGHLEIV 181
           +   DS   T LH A+S  +V+V KFL+E G+ +  +  S+ +TA         G+ +  
Sbjct: 60  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 119

Query: 182 KALLSKEP 189
           + L   + 
Sbjct: 120 QFLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 3/128 (2%)

Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVII 226
             L  ++  G  ++V+ ++ +     L ND+      +    G +  +   +     V  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 227 NMVDAKGNSALHIATRKGRVQKLLNINGVDK-AVINKSRETALDTAE--KTGHSEIGVIL 283
              D         +    +V K L  +G    A+     +TA D  E  + G+++    L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 284 KEHGVPCG 291
                  G
Sbjct: 123 YGVQEKMG 130

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 34/125 (27%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTL--------------------------------ATI 160
             L  +S +G  ++V+ ++ +                                       
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTA--LHMAVKGQSIELVDEL 218
           A S+G T LH AA   ++++ K L+     +        QTA      ++    +    L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 219 VKVEP 223
             V+ 
Sbjct: 123 YGVQE 127

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-08
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 4/155 (2%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             L  A+++G V+ V+ LL +           GKTAL           ++     + G  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE---LLKQGAS 60

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLL-N 251
                   T+              +++      +N+ D  G   +H+A ++G    +   
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 252 INGVDKAVINKSRETALDTAEKTGHSEIGVILKEH 286
               D    +    T L+ A + G  ++  IL+ H
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 11/165 (6%)

Query: 22  RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREM 81
           R    L      G V+ V  ++              +N+ G+TAL V         +  +
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHREL-----VHPDALNRFGKTALQVMMFGSTAIALELL 55

Query: 82  IRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ 141
            +                +    A +        ++      +   D +    +H A  +
Sbjct: 56  KQGASP----NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111

Query: 142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS 186
           GH  VV FL  +         + G T L  A + G  ++V  L  
Sbjct: 112 GHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 6e-05
 Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 7/160 (4%)

Query: 60  QSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEA 119
           ++G+  L  AA  G V  VR ++           A N +    +         + + +  
Sbjct: 1   RAGDR-LSGAAARGDVQEVRRLLHREL---VHPDALNRFGKTALQVMMFGSTAIALELLK 56

Query: 120 LPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLE 179
                   D+S T+ +H A+  G ++ +K L+E G+ +  +    G   +H A + GH  
Sbjct: 57  QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTA 115

Query: 180 IVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV 219
           +V  L       + R D +G T L +A++  + +LVD L 
Sbjct: 116 VVSFLA--AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 5e-08
 Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 1/155 (0%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             L +A+++G +E +  LL+    +       G+TAL            + LL      +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNI 252
                                      + +  I +                  V+ L+  
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 253 NGVDKAVINKSRETALDTAEKTGHSEIGVILKEHG 287
              +    N   +TA D A   G +E+  +++ +G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 37/157 (23%)

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILME----- 118
             L  AA  G ++ +  +++ +      + A+NG+    +   +     +   +      
Sbjct: 3   NELASAAARGDLEQLTSLLQNN----VNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 119 ----------------------------ALPELLMTFDSSNTTALHTASSQGHVEVVKFL 150
                                            +   D+     LH A+ +GH+ VV+FL
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 151 LEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSK 187
           ++  ++        G TA   A   G  E+V  + + 
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 128 DSSNTTALHTASSQGHVEVVKFLLEKG 154
           +    TA   A   G  EVV  +   G
Sbjct: 130 NHKGDTACDLARLYGRNEVVSLMQANG 156

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 6/154 (3%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
             L  A+  G  + V+ L+  G+   T     G + LH AA+ GH    +       G+ 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEV--LLRAGVS 59

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQ--KLL 250
                K           +    + E++      +N  D    +ALH AT     +  +LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 251 NINGVDKAVINKSRETALDTAEKTGHSEIGVILK 284
              G D    +K  +TA D +   G+ ++  IL+
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 11/160 (6%)

Query: 25  TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRY 84
             L    R G  + V  ++++             +  G + L++AA+YG+      ++R 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-------TDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 85  HDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHV 144
             +  A  K          +     +  + +   A        D    TALH A+   H 
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHWATEHNHQ 113

Query: 145 EVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL 184
           EVV+ L++ G+ +        KTA   +  NG+ ++ + L
Sbjct: 114 EVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (103), Expect = 5e-06
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 64  TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL 123
             L  AA  G  D VR ++       A         +    A Q        ++      
Sbjct: 4   KKLLEAARAGQDDEVRILMANG----APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 124 LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA 183
                  + T LH A+S+GH  +V+ LL+ G+           TALH A  + H E+V+ 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL 218
           L+     +  +  K  +TA  +++   + +L + L
Sbjct: 119 LIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 23/113 (20%), Positives = 37/113 (32%)

Query: 167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVII 226
                A +NG L+ VK  ++K   +    +   +   + A  GQ   L   L+K   +  
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 227 NMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEI 279
                       +        KLL   G DK V      TAL+  +      +
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKAL 116

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (85), Expect = 7e-04
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 62  GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALP 121
            +     A + G +D V++ +   +      +   G       A       +   +    
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKG 58

Query: 122 ELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV 181
             +   D  + T L +A  +GHV  VK  L       T+   +G TAL +       + +
Sbjct: 59  ADINAPDKHHITPLLSAVYEGHVSCVKL-LLSKGADKTVKGPDGLTALEATDN----QAI 113

Query: 182 KALL 185
           KALL
Sbjct: 114 KALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 4/118 (3%)

Query: 133 TALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIV 192
                A   G ++ VK  + KG  +        K   ++A       +         G  
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF---LLLKGAD 60

Query: 193 LRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLL 250
           +    K      ++   +      +L+  +     +    G +AL     +  ++ LL
Sbjct: 61  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQA-IKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	534
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=296.08  Aligned_cols=265  Identities=26%  Similarity=0.389  Sum_probs=179.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHH
Q 009452           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (534)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (534)
                      ||||.||..|+.++|++|++.|+++      +..|..|+||||+|+..|+.+++++|+++|.  +.+.++.+|.||||+|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga--di~~~~~~g~t~L~~A   73 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP------NVSNVKVETPLHMAARAGHTEVAKYLLQNKA--KVNAKAKDDQTPLHCA   73 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS------CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC--CSSCCCTTSCCHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcC--CCCCCCCCCCCHHHHH
Confidence            6777777777777777777776653      4456777777777777777777777777763  3455666777777777


Q ss_pred             HHCCCHHHHHHHHhhCc---------------------------------------------------------------
Q 009452          105 AKQGCLEVLKILMEALP---------------------------------------------------------------  121 (534)
Q Consensus       105 a~~g~~~iv~~Ll~~~~---------------------------------------------------------------  121 (534)
                      +..|+.+++++|+...+                                                               
T Consensus        74 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~  153 (408)
T d1n11a_          74 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE  153 (408)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH
Confidence            77777777766665432                                                               


Q ss_pred             ---cccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchh--------------------------------hhhcCCC
Q 009452          122 ---ELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLAT--------------------------------IARSNGK  166 (534)
Q Consensus       122 ---~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~--------------------------------~~~~~g~  166 (534)
                         +.. ..+.+|.+|||+|+..|+.+++++|+++|+++..                                ..+..|.
T Consensus       154 ~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  232 (408)
T d1n11a_         154 RDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV  232 (408)
T ss_dssp             TTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCC
Confidence               221 1244555555555555555555555555544310                                0122344


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH
Q 009452          167 TALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (534)
Q Consensus       167 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~  246 (534)
                      ||||.|+..++.++++++++....... .+..|.|||+.|++.++.+++++|++ .+.+++..+..+.||||.++..++.
T Consensus       233 t~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~a~~~~~~~i~~~Ll~-~g~~~~~~~~~~~t~L~~~~~~~~~  310 (408)
T d1n11a_         233 TPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNI  310 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             CHHHHHHHhCcHhHhhhhhcccccccc-ccCCCCChhhhhhhcCcHHHHHHHHH-CCCccccccccccccchhhcccCcc
Confidence            444445555555555555544443332 35667777777777888888888887 4566788888888888888888875


Q ss_pred             --HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCCCccch
Q 009452          247 --QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIKPQANS  300 (534)
Q Consensus       247 --~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~  300 (534)
                        .+.++..|++++.+|.+|.||||+|++.|+.+++++|+++|+++......+..+
T Consensus       311 ~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~  366 (408)
T d1n11a_         311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP  366 (408)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred             eeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence              577778899999999999999999999999999999999999987655544443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-34  Score=292.77  Aligned_cols=260  Identities=25%  Similarity=0.375  Sum_probs=221.9

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCc---------
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDT---------   87 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~---------   87 (534)
                      +..|..|.||||+|++.|+.++|++|+++|++.      +.++.+|.||||+|+..|+.+++++|+.....         
T Consensus        27 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi------~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~  100 (408)
T d1n11a_          27 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV------NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH  100 (408)
T ss_dssp             CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccccccc
Confidence            456888999999999999999999999999764      55678888888888888888887777653210         


Q ss_pred             -------------------------------------------------------ccccccccCCCcHHHHHHHCCCHHH
Q 009452           88 -------------------------------------------------------SLAGIKARNGYDAFHIAAKQGCLEV  112 (534)
Q Consensus        88 -------------------------------------------------------~~~~~~~~~g~t~Lh~Aa~~g~~~i  112 (534)
                                                                             ...+..+.+|.+|||+|+..|+.++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~  180 (408)
T d1n11a_         101 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI  180 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH
T ss_pred             chhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHH
Confidence                                                                   1223445678999999999999999


Q ss_pred             HHHHHhhCccccc--------------------------------cCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhh
Q 009452          113 LKILMEALPELLM--------------------------------TFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATI  160 (534)
Q Consensus       113 v~~Ll~~~~~~~~--------------------------------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~  160 (534)
                      +++|++++++...                                ..+..|.|||++|+..++.++++++++.+... ..
T Consensus       181 ~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~  259 (408)
T d1n11a_         181 VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NL  259 (408)
T ss_dssp             HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TC
T ss_pred             HHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-cc
Confidence            9999998765421                                12456778888888888889999988887776 55


Q ss_pred             hhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHH
Q 009452          161 ARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA  240 (534)
Q Consensus       161 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~A  240 (534)
                      .+..|.||++.|+..++.+++++|++++.++... +..+.||||.++..++.++++++++ .+.++|.+|.+|+||||+|
T Consensus       260 ~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~-~~~~~t~L~~~~~~~~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A  337 (408)
T d1n11a_         260 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQA  337 (408)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCCCChhhhhhhcCcHHHHHHHHHCCCccccc-cccccccchhhcccCcceeeeeecc-ccccccccCCCCCCHHHHH
Confidence            7888999999999999999999999999887654 7889999999999999999999999 6788999999999999999


Q ss_pred             HHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHh
Q 009452          241 TRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE  285 (534)
Q Consensus       241 a~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~  285 (534)
                      ++.|+.  .++|+++|+|++.+|.+|+|||++|+..|+.+++++|..
T Consensus       338 ~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         338 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999986  689999999999999999999999999999999987643

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6e-34  Score=272.45  Aligned_cols=244  Identities=20%  Similarity=0.187  Sum_probs=133.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCC
Q 009452           19 TAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGY   98 (534)
Q Consensus        19 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   98 (534)
                      .+++|.||||.|++.|+.+++++|++.+++.   ..++.+|..|.||||+|+..|+.+++++|++.+  .+.+.+|.+|.
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~---~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~i~~~d~~g~   79 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGH   79 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTSC
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc---ccccCcCCCCCCccchHHhhccccccccccccc--ccccccccccc
Confidence            3566666666666666666666666666543   234556666666666666666666666666655  33445566666


Q ss_pred             cHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcH
Q 009452           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (534)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  178 (534)
                      ||||+|+..|+.++++.|++........    ....+......-.                  ......++.........
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~----~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~  137 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRD----ASDTYLTQSQDCT------------------PDTSHAPAAVDSQPNPE  137 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCC----C-----------------------------------------------
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcc----cchhhhhHHhhhc------------------ccchHHHHHHHhhcchh
Confidence            6666666666666666666544322110    0000000000000                  00000011111111111


Q ss_pred             HHHHHHH-hcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCC
Q 009452          179 EIVKALL-SKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGV  255 (534)
Q Consensus       179 ~iv~~Ll-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~  255 (534)
                      .....+. ..+.. ...+|..|.||||+|++.++.+++++|++......+..+..|.||||+|++.++.  .++|+++|+
T Consensus       138 ~~~~~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~ga  216 (255)
T d1oy3d_         138 NEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA  216 (255)
T ss_dssp             ------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHhhhcCcc-cccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCC
Confidence            1111111 11111 2234666777777777777777777777655444445566677777777777664  466667777


Q ss_pred             ChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCC
Q 009452          256 DKAVINKSRETALDTAEKTGHSEIGVILKEHGVPC  290 (534)
Q Consensus       256 ~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~  290 (534)
                      +++.+|..|.|||++|+..++.+++++|+++||+.
T Consensus       217 din~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             CTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            77777777888888888888888888888888863

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=263.41  Aligned_cols=206  Identities=25%  Similarity=0.363  Sum_probs=108.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHH
Q 009452           24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHI  103 (534)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~  103 (534)
                      ++.|+.+++.|+++.|+.++...+     ..++.+|.+|.||||+||..|+.+++++|++.+..  ....+..+.++++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~-----~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~--~~~~~~~~~~~~~~   76 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADK-----SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHI   76 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--SCCCCTTCCCHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCC-----CcCcCcCCCCCCHHHHHHHhhhhcccccccccccc--cccccccccccccc
Confidence            455555555555555555555543     23455555555555555555555555555554422  22233445555555


Q ss_pred             HHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHH
Q 009452          104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA  183 (534)
Q Consensus       104 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~  183 (534)
                      |+..|+.+++++|+++++++. ..|..|.||||+|+..|+.+++++|+++|.++ ...+..|.||||+|+..|+.+++++
T Consensus        77 ~~~~~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          77 AASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhh
Confidence            555555555555555554432 23555555555555555555555555555554 3444555555555555555555555


Q ss_pred             HHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHH
Q 009452          184 LLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIA  240 (534)
Q Consensus       184 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~A  240 (534)
                      |++.+.++.. .|..|+||||.|+..|+.+++++|++ .+.+++.+|.+|+||||+|
T Consensus       155 L~~~~~~i~~-~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         155 LLYYKASTNI-QDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             HHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHC
T ss_pred             hccccceeee-ccCCCCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHH
Confidence            5555554432 24555555555555555555555554 3444455555555555544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.3e-34  Score=271.85  Aligned_cols=198  Identities=18%  Similarity=0.118  Sum_probs=137.4

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccccc-
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKAR-   95 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-   95 (534)
                      +..|..|.||||+|+..|+.++++.|++.|.++      +.+|.+|.||||+|+..|+.+++++|++..........+. 
T Consensus        39 ~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i------~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  112 (255)
T d1oy3d_          39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGV------LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY  112 (255)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS------SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----
T ss_pred             cCcCCCCCCccchHHhhcccccccccccccccc------cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhh
Confidence            456788999999999999999999999999764      5668999999999999999999999998754322211111 


Q ss_pred             -------CCCcHHHHHHH---CCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCC
Q 009452           96 -------NGYDAFHIAAK---QGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG  165 (534)
Q Consensus        96 -------~g~t~Lh~Aa~---~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  165 (534)
                             .+.+.+..+..   .........+........+.+|..|.||||+|+..|+.+++++|++.+++.....+..|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  192 (255)
T d1oy3d_         113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG  192 (255)
T ss_dssp             -------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred             hhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccc
Confidence                   01111111111   11111111111111122344577888888888888888888888888877766666778


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       166 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                      .||||+|+..|+.+++++|+++|.++.. +|..|+||||+|++.++.+++++|++.
T Consensus       193 ~TpL~~A~~~~~~~~v~~Ll~~gadin~-~d~~g~t~L~~A~~~~~~~i~~~Ll~~  247 (255)
T d1oy3d_         193 RTPLHLAVEAQAASVLELLLKAGADPTA-RMYGGRTPLGSALLRPNPILARLLRAH  247 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred             cccccccccccHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            8888888888888888888888877654 477888888888888888888888874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-33  Score=264.84  Aligned_cols=226  Identities=26%  Similarity=0.327  Sum_probs=150.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccc-ccccccCCCcHHH
Q 009452           24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSL-AGIKARNGYDAFH  102 (534)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~-~~~~~~~g~t~Lh  102 (534)
                      ++|||+||+.|+.+.|+.|++..+     ..++.+|.+|.||||+|+..|+.+++++|++.+.... ....+..|.+|+|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~-----~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~   75 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH   75 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCG-----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCC-----CcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccc
Confidence            467777777777777777776543     2346667777777777777777777777777664322 2344566777777


Q ss_pred             HHHHCCCHHHHHHHHhhCccc-cccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHH
Q 009452          103 IAAKQGCLEVLKILMEALPEL-LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV  181 (534)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv  181 (534)
                      +|+..+..++++.++..+... ....+..+.||++.++..++.+++++|++.+... ...+.+|.||||+|+..|+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          76 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             HHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccc
Confidence            777777777777776665432 2233556677777777777777777777776665 44566677777777777777777


Q ss_pred             HHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhcCCC
Q 009452          182 KALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVD  256 (534)
Q Consensus       182 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~~  256 (534)
                      ++|++.++.....+|..|.||||+|+++|+.+++++|++..+.+++.+|.+|+||||+|+.. .+.++|+++|+|
T Consensus       155 ~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~-~~~~~Ll~~g~d  228 (229)
T d1ixva_         155 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-QVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH-HHHHHHHHHCCC
T ss_pred             ccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH-HHHHHHHHcCCC
Confidence            77777765555555677777777777777777777777655666666666666766666532 234555555544

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-33  Score=259.92  Aligned_cols=218  Identities=29%  Similarity=0.343  Sum_probs=199.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhc
Q 009452           62 GETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQ  141 (534)
Q Consensus        62 g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  141 (534)
                      +++.|+.+|..|+.+.|+.++... +...+.+|..|+||||+|+..|+.++++++++........ +..+.++++.|+..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCC-CTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccc-cccccccccccccc
Confidence            578999999999999999888865 4567789999999999999999999999999998776554 67889999999999


Q ss_pred             CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                      |+.+++++|+++++++ ...|.+|.||||+|+..|+.+++++|+++|.++.. .|..|.||||.|+..++.+++++|.. 
T Consensus        81 ~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~-~~~~~~t~L~~a~~~~~~~~~~~L~~-  157 (223)
T d1uoha_          81 GRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEATAMHRAAAKGNLKMIHILLY-  157 (223)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             cccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCccchhhhhcCCcchhhhhcc-
Confidence            9999999999999987 67899999999999999999999999999988754 58999999999999999999999988 


Q ss_pred             CCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHh
Q 009452          222 EPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKE  285 (534)
Q Consensus       222 ~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~  285 (534)
                      .+.+++.+|.+|+||||+|+..++.  .++|++.|+|++.+|..|+||||+|. .|+.++++.|++
T Consensus       158 ~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         158 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             ccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            6677999999999999999999986  68888999999999999999999984 699999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-32  Score=262.01  Aligned_cols=262  Identities=24%  Similarity=0.326  Sum_probs=221.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHH
Q 009452           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (534)
                      +++|+||.|++.|+.++|++|+++|++.+.     ..+..|.||||+|+..|+.+++++|++.+..  ....+..+.+|.
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~-----~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~--~~~~~~~~~~~~   76 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF-----QEEEGGWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPF   76 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC-----CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCc-----cCCCCCCCHHHHHHHcCCHHHhhhhcccccc--ccccccccchhh
Confidence            467999999999999999999999987431     2345799999999999999999999998743  445677889999


Q ss_pred             HHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCch---------hhhhcCCCcHHHHH
Q 009452          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLA---------TIARSNGKTALHSA  172 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~g~tpLh~A  172 (534)
                      +.|+..+..+.....++...+... .+..+.++++.|+..|+...++.++....+..         ...+..|.||||+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  155 (285)
T d1wdya_          77 LLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  155 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred             HHHhhcCCccccchhhhhcccccc-cccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHH
Confidence            999999999999999998766443 48889999999999999999999998755531         22345699999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHh----CCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--
Q 009452          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVK----GQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--  246 (534)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--  246 (534)
                      +.+|+.+++++|+++........+..|.++++.+..    .+..+++++|++ .+.+++.+|.+|.||||+|++.++.  
T Consensus       156 ~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~-~ga~~n~~~~~g~t~L~~a~~~~~~~~  234 (285)
T d1wdya_         156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGL  234 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHH-CCCCCCccCCCCCCccchhhhcCcHHH
Confidence            999999999999986433334557889888887654    334579999998 5777999999999999999999986  


Q ss_pred             HHHhh-hcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCC
Q 009452          247 QKLLN-INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGK  292 (534)
Q Consensus       247 ~~ll~-~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~  292 (534)
                      .++++ ..|++++.+|.+|.|||++|++.|+.+++++|+++||+++.
T Consensus       235 v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             HHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            44454 57999999999999999999999999999999999999754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-32  Score=257.04  Aligned_cols=222  Identities=23%  Similarity=0.253  Sum_probs=197.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccc--cccCCCCCCcHHHHHHh
Q 009452           63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPEL--LMTFDSSNTTALHTASS  140 (534)
Q Consensus        63 ~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpLh~A~~  140 (534)
                      +||||+||..|+.++++.|++.. +...+.+|.+|+||||+|+..|+.+++++|++++++.  ....+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            58999999999999999999875 3567788999999999999999999999999998765  34568899999999999


Q ss_pred             cCCHHHHHHHHhcCCCc-hhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHh
Q 009452          141 QGHVEVVKFLLEKGSTL-ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELV  219 (534)
Q Consensus       141 ~g~~~~v~~Ll~~~~~~-~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll  219 (534)
                      .+..++++.++..+... ....+..+.||++.++..++.+++++|++.+..... .|..|+||||.|+..|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc-cCCCCCCccchhhhccccccccccc
Confidence            99999999999987654 233566789999999999999999999999888654 4899999999999999999999999


Q ss_pred             hcCCccccccCCCCCcHHHHHHHcCcH--HHHhh-hcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCC
Q 009452          220 KVEPVIINMVDAKGNSALHIATRKGRV--QKLLN-INGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  289 (534)
Q Consensus       220 ~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~-~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~  289 (534)
                      +..+.+++.+|.+|+||||+|+..++.  .++|+ ..|+|++.+|..|+|||++|+.   .+++++|+++|++
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            987788999999999999999999985  45555 5799999999999999999974   5899999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.8e-32  Score=262.69  Aligned_cols=254  Identities=19%  Similarity=0.235  Sum_probs=204.4

Q ss_pred             CcHHHHHHHcC-CHHHHHHHHHhcCChhHHHHHHhcC-CCCCcHHHHHHHcCCHHHHHHHHHhC------Cccccccccc
Q 009452           24 DTPLQSLVRTG-SVELVLDMISSYGDMELREMLSKMN-QSGETALYVAAEYGYVDMVREMIRYH------DTSLAGIKAR   95 (534)
Q Consensus        24 ~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~l~~~n-~~g~T~Lh~Aa~~g~~~iv~~Ll~~~------~~~~~~~~~~   95 (534)
                      +||||.|++.+ +.++++.|.+.+.+        ..+ ++|.||||+||..|+.++|+.|+.+.      .+.+++.+|.
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n--------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~   72 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN--------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC   72 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT--------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC--------cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC
Confidence            58999777754 44555444454432        223 46999999999999999998876542      1245677899


Q ss_pred             CCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc--hhhhhcCCCcHHHHHH
Q 009452           96 NGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTL--ATIARSNGKTALHSAA  173 (534)
Q Consensus        96 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~A~  173 (534)
                      +|+||||+|+..|+.+++++|+++++++.. .|.+|.|||++|+..++.++++++...+...  ....+..+.++.+.+.
T Consensus        73 ~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~-~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  151 (277)
T d2fo1e1          73 DENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  151 (277)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCeeecccccccccccccccccccccccc-ccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHH
Confidence            999999999999999999999999988654 4889999999999999999999998764321  1234667889999998


Q ss_pred             HcCcH---HHHHHHHhcCCCC-------cccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHc
Q 009452          174 RNGHL---EIVKALLSKEPGI-------VLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRK  243 (534)
Q Consensus       174 ~~g~~---~iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~  243 (534)
                      ..+..   ..+..+.+.....       ....+..|.|+||.++..++.+++++++...+.+.+.+|..|.||||+|++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~  231 (277)
T d2fo1e1         152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  231 (277)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             hcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHc
Confidence            87653   3444444443221       1234678999999999999999999988878888999999999999999999


Q ss_pred             CcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhc
Q 009452          244 GRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEH  286 (534)
Q Consensus       244 ~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~  286 (534)
                      |+.  .++|++.|+|++.+|..|+|||++|++.|+.+++++|.+.
T Consensus       232 g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         232 GRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             TCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            986  6888999999999999999999999999999999999863

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=6.4e-31  Score=256.26  Aligned_cols=241  Identities=25%  Similarity=0.280  Sum_probs=192.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHH
Q 009452           22 RDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAF  101 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  101 (534)
                      .+.|+|+.||+.|+.++|++|+++|+++      +.+|.+|.||||+|+..|+.+++++|++++..  ....+..+.+||
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadv------n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~--~~~~~~~~~~~L  110 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADI------NYANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPL  110 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCT------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCC------CccCCCCCcHHHHHHhcCCceeeeeecccccc--cccccccccccc
Confidence            3558999999999999999999999774      56789999999999999999999999998744  455677899999


Q ss_pred             HHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHH
Q 009452          102 HIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV  181 (534)
Q Consensus       102 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv  181 (534)
                      +.|+..|+.++++.|++++.... ..|..+.+|+++|+..++.+.++.++.............+..+.+       ....
T Consensus       111 ~~a~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~  182 (291)
T d1s70b_         111 HAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-------RDAR  182 (291)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------HHHH
T ss_pred             cccccccccchhhcccccCcccc-cccccCccccccccccccchhcccccccccccccccccccccccc-------ccch
Confidence            99999999999999999887654 448899999999999999999999987643322222222211111       1222


Q ss_pred             HHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHh
Q 009452          182 KALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAV  259 (534)
Q Consensus       182 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~  259 (534)
                      ..+... .......+..|.||||.|+..|+.+++++|++ .+.++|.+|.+|+||||+|+..|+.  .++|+++|+|++.
T Consensus       183 ~~~~~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~  260 (291)
T d1s70b_         183 QWLNSG-HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA  260 (291)
T ss_dssp             HHHHHT-CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             hhhccc-ccccccccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            223332 23334457889999999999999999999998 5677899999999999999999986  6888899999999


Q ss_pred             hhccCCcHHHHHHhcCchhHHHHHH
Q 009452          260 INKSRETALDTAEKTGHSEIGVILK  284 (534)
Q Consensus       260 ~n~~g~T~l~~A~~~~~~~i~~~L~  284 (534)
                      +|..|+||||+|++    +++++|.
T Consensus       261 ~d~~G~TaL~~A~e----~~~~~L~  281 (291)
T d1s70b_         261 VNKVGQTAFDVADE----DILGYLE  281 (291)
T ss_dssp             CCTTSCCTTTSCCS----GGGHHHH
T ss_pred             cCCCCCCHHHHHHH----HHHHHHH
Confidence            99999999999964    4555554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-28  Score=226.51  Aligned_cols=218  Identities=25%  Similarity=0.288  Sum_probs=134.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhC--CcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009452           61 SGETALYVAAEYGYVDMVREMIRYH--DTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (534)
Q Consensus        61 ~g~T~Lh~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (534)
                      +|+||||+||..|+.++++.|++..  .+.+.+.+|.+|+||||+|+..|+.+++++|+++++.... .+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~-~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccc-cccccccccccc
Confidence            4666666666666666666665421  1233455566666666666666666666666666554433 255566666666


Q ss_pred             HhcCCHHHHHHHHhcCCCc---hhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHH
Q 009452          139 SSQGHVEVVKFLLEKGSTL---ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELV  215 (534)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~---~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv  215 (534)
                      ...++.++++.+.......   .......+.++|+.+.........+.|.....+.....+..|.++|+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            6666666666555543221   1122334566666666666666666666666655555556666777777777777777


Q ss_pred             HHHhhcCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHH
Q 009452          216 DELVKVEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIG  280 (534)
Q Consensus       216 ~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~  280 (534)
                      +.+++ .+..++.+|..|+||||+|+..|+.  .++|++.|+|++.+|.+|+|||++|++.|+.+++
T Consensus       161 ~~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         161 QLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             hhhhh-hccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            76666 4455666677777777777776664  4666666777777777777777777766666655

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.8e-28  Score=236.52  Aligned_cols=230  Identities=21%  Similarity=0.266  Sum_probs=183.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHH--HHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELR--EMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~--~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      +++|.||||+|+..|+.++|+.|+.......+.  ..++.+|.+|.||||+|+..|+.++|++|+++|.  +.+.++.+|
T Consensus        30 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga--d~n~~~~~g  107 (277)
T d2fo1e1          30 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA--DPTIYNKSE  107 (277)
T ss_dssp             CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CSCCCCTTC
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccc--ccccccccc
Confidence            357999999999999999998886543210000  0145678999999999999999999999999874  466788999


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCcc--ccccCCCCCCcHHHHHHhcCCH---HHHHHHHhcCCCc-------hhhhhcCC
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPE--LLMTFDSSNTTALHTASSQGHV---EVVKFLLEKGSTL-------ATIARSNG  165 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~g~~---~~v~~Ll~~~~~~-------~~~~~~~g  165 (534)
                      .||||+|+..++.++++.+......  .....+..+.++.+.+...+..   ..+..+.+.....       ....+..|
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            9999999999999999998875432  2334578889999999887653   3455555443221       12345679


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCc
Q 009452          166 KTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR  245 (534)
Q Consensus       166 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~  245 (534)
                      .||||.++..++.+++++++..........|..|+||||+|++.|+.+++++|++ .+.++|.+|.+|+||||+|++.|+
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             CCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999999988777666666679999999999999999999999999 677899999999999999999998


Q ss_pred             H--HHHhhh
Q 009452          246 V--QKLLNI  252 (534)
Q Consensus       246 ~--~~ll~~  252 (534)
                      .  .++|.+
T Consensus       267 ~~iv~lL~~  275 (277)
T d2fo1e1         267 HNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            6  455543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-27  Score=222.16  Aligned_cols=215  Identities=24%  Similarity=0.325  Sum_probs=187.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH----hcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           22 RDDTPLQSLVRTGSVELVLDMIS----SYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      +|+||||.||+.|+.++|+.|++    .+.+      ++.+|..|.||||+|+..|+.+++++|++.+..  .+.....|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~--~~~~~~~~   73 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS--PMALDRHG   73 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC------CCccCCCCCccceehhccccccccccccccccc--cccccccc
Confidence            69999999999999999999986    3333      466789999999999999999999999998744  45577889


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCccc---cccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHH
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPEL---LMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAAR  174 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~  174 (534)
                      .++++.|...++.++++.+.......   .........+||+.+.........+.|.....+........|.+||+.|+.
T Consensus        74 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~  153 (228)
T d1k1aa_          74 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  153 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             ccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHH
Confidence            99999999999999999888764432   233456778999999999999999999998887766677889999999999


Q ss_pred             cCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCcH
Q 009452          175 NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGRV  246 (534)
Q Consensus       175 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~  246 (534)
                      .+..++++.+++.+...... |..|.||||+|+..|+.+++++|++ .+.++|.+|.+|+||||+|+++|+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~-~Gad~n~~d~~G~TpL~~A~~~~~~  223 (228)
T d1k1aa_         154 NNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVI  223 (228)
T ss_dssp             TTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             hhhhhhhhhhhhhccccccc-cccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCc
Confidence            99999999999998876654 8999999999999999999999998 5778999999999999999988765

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-28  Score=230.27  Aligned_cols=192  Identities=21%  Similarity=0.299  Sum_probs=159.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHH----HhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCC
Q 009452           22 RDDTPLQSLVRTGSVELVLDMI----SSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNG   97 (534)
Q Consensus        22 ~g~t~Lh~A~~~g~~~~v~~Ll----~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   97 (534)
                      +|+||||+|+..|+.+++..++    ..+.+      ++.+|.+|+||||+|+..|+.+++++|++.+  .+.+.+|..|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~------in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g--~d~~~~d~~g   72 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF------LNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRG   72 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC------CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC------cccCCCCCCcccccccccccccccccccccc--cccccccccc
Confidence            5899999999999976655544    34433      4667889999999999999999999999877  4456788899


Q ss_pred             CcHHHHHHHCCCHHHHHHHHhhCcc-----ccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHH
Q 009452           98 YDAFHIAAKQGCLEVLKILMEALPE-----LLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSA  172 (534)
Q Consensus        98 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A  172 (534)
                      .||||.|+..|+.++++.|++.+..     ........|.||||.|+..++.+.+++|++.+.......+.+|.||||+|
T Consensus        73 ~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A  152 (221)
T d1iknd_          73 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA  152 (221)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             ccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccc
Confidence            9999999999999999999986432     23344567889999999999999999999999888666677899999999


Q ss_pred             HHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcC
Q 009452          173 ARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVE  222 (534)
Q Consensus       173 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~  222 (534)
                      +..|+.+++++|+++|+++.. +|.+|+||||+|++.++.+++++|++..
T Consensus       153 ~~~g~~~~v~~Ll~~gad~~~-~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         153 VDLQNPDLVSLLLKCGADVNR-VTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             HHTTCHHHHHHHHTTTCCSCC-CCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             cccccHHHHHHHHhcCCcccc-cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999988654 4899999999999999999999998853

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.3e-27  Score=226.62  Aligned_cols=233  Identities=26%  Similarity=0.328  Sum_probs=199.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCc
Q 009452           20 AKRDDTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYD   99 (534)
Q Consensus        20 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   99 (534)
                      +..|.||||+|+..|+.++++.|++.+...      ...+..+.+|.+.|+..+..+.....++...  .....+..+.|
T Consensus        36 ~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  107 (285)
T d1wdya_          36 EEGGWTPLHNAVQMSREDIVELLLRHGADP------VLRKKNGATPFLLAAIAGSVKLLKLFLSKGA--DVNECDFYGFT  107 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CTTCBCTTCCB
T ss_pred             CCCCCCHHHHHHHcCCHHHhhhhccccccc------cccccccchhhHHHhhcCCccccchhhhhcc--cccccccCCCc
Confidence            457999999999999999999999988653      4456788999999999999999999998753  33446778999


Q ss_pred             HHHHHHHCCCHHHHHHHHhhCccc---------cccCCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCchhhhhcCCCcHH
Q 009452          100 AFHIAAKQGCLEVLKILMEALPEL---------LMTFDSSNTTALHTASSQGHVEVVKFLLEK-GSTLATIARSNGKTAL  169 (534)
Q Consensus       100 ~Lh~Aa~~g~~~iv~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL  169 (534)
                      +++.|+..|+...++.++....+.         ....+..|.||||+|+..|+.+++++|+++ |.++ ...+..|.+++
T Consensus       108 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~  186 (285)
T d1wdya_         108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNAL  186 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHH
T ss_pred             hhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCccc
Confidence            999999999999999999865442         223466799999999999999999999976 5555 66778888888


Q ss_pred             HHHHH----cCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCc
Q 009452          170 HSAAR----NGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR  245 (534)
Q Consensus       170 h~A~~----~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~  245 (534)
                      +.+..    .+..+++++|+++++++.. .|..|.||||.|++.|+.+++++|++..+.++|.+|.+|+||||+|++.++
T Consensus       187 ~~~~~~~~~~~~~~i~~~Li~~ga~~n~-~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         187 IHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             HHHHHCSCTTTHHHHHHHHHHTTCCSSC-CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccchHHHHHHHHHHHCCCCCCc-cCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            77654    3456799999999999764 489999999999999999999999997888999999999999999999998


Q ss_pred             H--HHHhhhcCCChHhhhc
Q 009452          246 V--QKLLNINGVDKAVINK  262 (534)
Q Consensus       246 ~--~~ll~~~g~~~~~~n~  262 (534)
                      .  .++|+++|+|+|++|.
T Consensus       266 ~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         266 KKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHHHHHCCCCCCcccC
Confidence            6  6899999999998873

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-28  Score=227.20  Aligned_cols=196  Identities=26%  Similarity=0.257  Sum_probs=117.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhC--CcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009452           61 SGETALYVAAEYGYVDMVREMIRYH--DTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (534)
Q Consensus        61 ~g~T~Lh~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (534)
                      +|+||||+|+..|+.+++..|++..  ....++.+|.+|+||||+|+..|+.+++++|++.+++... .|..|.||||.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~-~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccc-cccccccccccc
Confidence            4777777777777754444333221  1234555666777777777777777777777776665433 366677777777


Q ss_pred             HhcCCHHHHHHHHhcCCCc-----hhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHH
Q 009452          139 SSQGHVEVVKFLLEKGSTL-----ATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIE  213 (534)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  213 (534)
                      +..|+.++++.|++.+...     .......|.||||.|+..|+.+++++|+..++......+.+|.||||.|++.|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            7777777777776654332     11122345566666666666666666666655555444455556666666666666


Q ss_pred             HHHHHhhcCCccccccCCCCCcHHHHHHHcCcHHHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCC
Q 009452          214 LVDELVKVEPVIINMVDAKGNSALHIATRKGRVQKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVP  289 (534)
Q Consensus       214 iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~~~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~  289 (534)
                      ++++|++                                +|+|++.+|.+|+|||++|+..++.+++++|.+.+.+
T Consensus       160 ~v~~Ll~--------------------------------~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         160 LVSLLLK--------------------------------CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHT--------------------------------TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHHh--------------------------------cCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            5555554                                4555566666666666666666667777777666554

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=2.5e-26  Score=212.09  Aligned_cols=198  Identities=24%  Similarity=0.288  Sum_probs=103.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHh-cCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHH
Q 009452           37 ELVLDMISSYGDMELREMLSK-MNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKI  115 (534)
Q Consensus        37 ~~v~~Ll~~~~~~~~~~~l~~-~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~  115 (534)
                      |+|+.|+++|      ..++. .|.+|.||||+||..|+.+++++|++.+.  ..+.++..+.++++.++..++......
T Consensus         3 ~~v~~Ll~~g------~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~--~~n~~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_           3 QVISDLLAQG------AELNATMDKTGETSLHLAARFARADAAKRLLDAGA--DANSQDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             HHHHHHHHHH------HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCC------CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcc--ccccccccccccccccccccccccccc
Confidence            5556666554      23332 35556666666666666666666665542  233455555566666665555555555


Q ss_pred             HHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccC
Q 009452          116 LMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRN  195 (534)
Q Consensus       116 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~  195 (534)
                      ...............|.++.+.+.........+.|.+.+.++ ...+..|.|||+.++..|..++++.+++.+.+++.. 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~-  152 (209)
T d1ot8a_          75 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-  152 (209)
T ss_dssp             HHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccccccc-
Confidence            444444333333445555555555555555555555555544 334455555555555555555555555555544322 


Q ss_pred             CCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHHHcCc
Q 009452          196 DKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIATRKGR  245 (534)
Q Consensus       196 d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa~~~~  245 (534)
                      |..|.||||.|+..|+.+++++|++ .+.+++.+|.+|+||||+|++.|+
T Consensus       153 d~~g~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         153 DDKDETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCC
Confidence            4555555555555555555555554 333444444445555554444444

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1e-25  Score=207.96  Aligned_cols=204  Identities=24%  Similarity=0.292  Sum_probs=178.3

Q ss_pred             HHHHHHHHHhCCcccccc-cccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 009452           75 VDMVREMIRYHDTSLAGI-KARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEK  153 (534)
Q Consensus        75 ~~iv~~Ll~~~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  153 (534)
                      .|+|++|+++|.  +++. .|.+|.||||+||..|+.+++++|++.++.... .+..+.++++.++..++.+........
T Consensus         2 ~~~v~~Ll~~g~--din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGA--ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANS-QDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCC--CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccc-ccccccccccccccccccccccccccc
Confidence            589999999874  4544 578999999999999999999999999887654 488899999999999998888887777


Q ss_pred             CCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCC
Q 009452          154 GSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKVEPVIINMVDAKG  233 (534)
Q Consensus       154 ~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G  233 (534)
                      ...........|.++.+.+.........+.|.+.+.++... +..|+|||+.++.++..++++.+++ .+.+++..|.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA-DNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhccccccc-CCCCCCcchhhcccCcceeeeeecc-cccccccccccc
Confidence            66655556677889999999999999999999988876544 7889999999999999999999998 566789999999


Q ss_pred             CcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHH
Q 009452          234 NSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVIL  283 (534)
Q Consensus       234 ~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L  283 (534)
                      +||||+|+..|+.  .++|++.|+|++..|..|+|||++|++.|+.+++++|
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999986  6888899999999999999999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=1.1e-26  Score=226.01  Aligned_cols=223  Identities=21%  Similarity=0.222  Sum_probs=182.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHh
Q 009452           61 SGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASS  140 (534)
Q Consensus        61 ~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  140 (534)
                      +|.|+|+.||..|+.++|++||+.|  .+++.+|.+|.||||+|+..|+.+++++|++++.+... .+..+.+||+.|+.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~G--advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~-~~~~~~~~L~~a~~  115 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAAS  115 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccc-cccccccccccccc
Confidence            4569999999999999999999988  44677899999999999999999999999999887544 47889999999999


Q ss_pred             cCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          141 QGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       141 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      .++.++++.|++++... ...+..|.+|+++|+..++.+.+..++.............+..+.       .......+. 
T Consensus       116 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-  186 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM-------LRDARQWLN-  186 (291)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------HHHHHHHHH-
T ss_pred             ccccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccc-------cccchhhhc-
Confidence            99999999999999876 567889999999999999999999998764332211111111111       112222222 


Q ss_pred             cCCccccccCCCCCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHHhcCchhHHHHHHhcCCCCCCCCC
Q 009452          221 VEPVIINMVDAKGNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAEKTGHSEIGVILKEHGVPCGKSIK  295 (534)
Q Consensus       221 ~~~~~in~~d~~G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~~~~~~~i~~~L~~~g~~~~~~~~  295 (534)
                      .........+..|.||||+|+..++.  ...|+..|++++..+..|.||||+|+..|+.+++++|+++|+++.....
T Consensus       187 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~  263 (291)
T d1s70b_         187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (291)
T ss_dssp             HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            24455677889999999999999986  6788899999999999999999999999999999999999999865543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=5.2e-27  Score=234.42  Aligned_cols=225  Identities=22%  Similarity=0.224  Sum_probs=99.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHH---HHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCcccccc-CCCCCCcH
Q 009452           59 NQSGETALYVAAEYGYVDMVRE---MIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMT-FDSSNTTA  134 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~---Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~-~d~~g~tp  134 (534)
                      +..|.||||+||++|+.+++++   |++.+  ...+..+.+|+||||+||..|+.++|++|++.+++.... .+.+|.||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            3444555555555555544443   33333  333444455555555555555555555555555443222 12335555


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCch--hhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCccc------CCCCCCcHHHHH
Q 009452          135 LHTASSQGHVEVVKFLLEKGSTLA--TIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLR------NDKKGQTALHMA  206 (534)
Q Consensus       135 Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~------~d~~g~t~Lh~A  206 (534)
                      ||+|+..|+.+++++|++.|+...  ...+.+|.||+|.|+.+|+.+++++|++.+++....      ....+.++++.+
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR  244 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHH
Confidence            555555555555555555554331  122233444555555555555555555544332110      112223444444


Q ss_pred             HhCCCHHHHHHHhhcCC-ccccccCC-------CCCcHHHHHHHcCcH--HHHhhhcCCCh-----HhhhccCCcHHHHH
Q 009452          207 VKGQSIELVDELVKVEP-VIINMVDA-------KGNSALHIATRKGRV--QKLLNINGVDK-----AVINKSRETALDTA  271 (534)
Q Consensus       207 ~~~~~~~iv~~Ll~~~~-~~in~~d~-------~G~T~Lh~Aa~~~~~--~~ll~~~g~~~-----~~~n~~g~T~l~~A  271 (534)
                      ...+..+....+..... ...+..+.       .+.++|+.|+..+..  .++|+..+...     +..+.+|+||||+|
T Consensus       245 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHH
T ss_pred             hhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHH
Confidence            43333333322222110 01111111       123455555555543  33444333322     22234566666666


Q ss_pred             HhcCchhHHHHHHh
Q 009452          272 EKTGHSEIGVILKE  285 (534)
Q Consensus       272 ~~~~~~~i~~~L~~  285 (534)
                      ++.|+.+++++|++
T Consensus       325 ~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         325 LRLGNQGACALLLS  338 (346)
T ss_dssp             HHHTCTTHHHHHTT
T ss_pred             HHcCcHHHHHHHhC
Confidence            66777777776665

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=3.1e-27  Score=236.12  Aligned_cols=229  Identities=21%  Similarity=0.209  Sum_probs=164.8

Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHH---HHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccc
Q 009452           17 QLTAKRDDTPLQSLVRTGSVELVLDM---ISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIK   93 (534)
Q Consensus        17 ~~~~~~g~t~Lh~A~~~g~~~~v~~L---l~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~   93 (534)
                      ...+..|.||||+|++.|+.++++.+   ++.+      ..++.++.+|.||||+||+.||.++|++|++.++.......
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~------~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~  157 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSD------EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI  157 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC------SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC------CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            34567899999999999999999985   3332      34677888899999999999999999999998865544434


Q ss_pred             ccCCCcHHHHHHHCCCHHHHHHHHhhCcccc--ccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcC-------
Q 009452           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELL--MTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSN-------  164 (534)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~--~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------  164 (534)
                      +.+|+||||+|+..|+.+++++|++.++...  ...+.+|.||+|.|+..|+.+++++|++.|++.. ..+..       
T Consensus       158 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~  236 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-YAEIHEFEYGEK  236 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH-HHHHCTTTTTTT
T ss_pred             ccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc-hHHHHHHHcCcH
Confidence            5579999999999999999999999987542  2334567788889999999999999999988763 22222       


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCC--------CCCcHHHHHHhCCCHHHHHHHhhcCCc----cccccCCC
Q 009452          165 GKTALHSAARNGHLEIVKALLSKEPGIVLRNDK--------KGQTALHMAVKGQSIELVDELVKVEPV----IINMVDAK  232 (534)
Q Consensus       165 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~--------~g~t~Lh~A~~~~~~~iv~~Ll~~~~~----~in~~d~~  232 (534)
                      +.++++.+...+..+....+.....+.......        .+.++++.|+..++.+++++|++....    ..+..+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~  316 (346)
T d2ajaa1         237 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD  316 (346)
T ss_dssp             THHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTC
T ss_pred             hhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCC
Confidence            234445554444444443333333222211100        023678889999999999999985432    23445578


Q ss_pred             CCcHHHHHHHcCcH--HHHhhh
Q 009452          233 GNSALHIATRKGRV--QKLLNI  252 (534)
Q Consensus       233 G~T~Lh~Aa~~~~~--~~ll~~  252 (534)
                      |+||||+|++.|+.  .++|+.
T Consensus       317 g~T~LhlA~~~Gn~e~v~lLL~  338 (346)
T d2ajaa1         317 ANELLRLALRLGNQGACALLLS  338 (346)
T ss_dssp             CCHHHHHHHHHTCTTHHHHHTT
T ss_pred             CCcHHHHHHHcCcHHHHHHHhC
Confidence            99999999999985  566664

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=191.52  Aligned_cols=152  Identities=23%  Similarity=0.291  Sum_probs=73.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (534)
                      +|||+||..|+.++|++|++.+.  +++.+|.+|.||||+|+ .|+.+++++|++++++.. ..+..|.+|++.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~--d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV--NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC--CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC--CcCccCCcccccccccc-cccccccccccccccccc-cccccCcccccccccccc
Confidence            44555555555555555554432  23334444555555443 344555555555444432 224445555555555555


Q ss_pred             HHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          144 VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       144 ~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      .+.++.|++.+.+. ...+..|.+|+|.|+..|+.+++++|+++++.....+|..|+||||+|++.++.+++++|++
T Consensus        79 ~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_          79 LDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            55555555544443 33444455555555555555555555555543333344555555555555555555555544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-24  Score=189.92  Aligned_cols=154  Identities=26%  Similarity=0.388  Sum_probs=88.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHH
Q 009452           25 TPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIA  104 (534)
Q Consensus        25 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  104 (534)
                      +|||.|+..|+.++|+.|+++|      ..++.+|.+|.||||+|+ .|+.+++++|++.+.  +.+..+..|.++|+.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g------~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a--~~~~~~~~~~~~l~~~   73 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN------VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGA--NPDLKDRTGFAVIHDA   73 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC------CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTC--CTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC------CCcCccCCcccccccccc-ccccccccccccccc--ccccccccCccccccc
Confidence            5566666666666666666543      224455556666666553 456666666665542  2344555566666666


Q ss_pred             HHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHH
Q 009452          105 AKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKAL  184 (534)
Q Consensus       105 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~L  184 (534)
                      +..++.+.++.+++.+.+... .|..|.+|||+|+..++.+++++|+++++.....+|.+|.||||+|++.|+.+++++|
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          74 ARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            666666666666655554332 2555666666666666666666666665543345555566666666666666666666


Q ss_pred             HhcC
Q 009452          185 LSKE  188 (534)
Q Consensus       185 l~~~  188 (534)
                      +++|
T Consensus       153 l~~G  156 (156)
T d1ihba_         153 QANG  156 (156)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            5543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.2e-24  Score=185.41  Aligned_cols=149  Identities=26%  Similarity=0.326  Sum_probs=92.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (534)
                      ||||.||+.|+.++|++||+++++.  . .+..|+||||+|+..++.++++.++........ .+..+.++++.++...+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~--~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCc--c-cccCCCccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            6666666666666666666665432  1 355666666666666666666666665544332 24555566666666666


Q ss_pred             HHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHH
Q 009452          144 VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDEL  218 (534)
Q Consensus       144 ~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L  218 (534)
                      .+.+++++.++.+. ...+.+|.||||+|+..|+.+++++|++.|+++.. .|.+|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~-~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcc-cCCCCCCHHHHHHHcCCHHHHHhC
Confidence            66666666666654 44566666666666666666666666666666543 366666666666666666666654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.5e-24  Score=188.44  Aligned_cols=149  Identities=27%  Similarity=0.378  Sum_probs=71.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHH
Q 009452           27 LQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAK  106 (534)
Q Consensus        27 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~  106 (534)
                      |+.|+..|++++|+.|++.+..     .++..|..|.||||+|+ .|+.+++++|++.+.  +.+..+..|.+|++.++.
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~-----~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~--~~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELV-----HPDALNRFGKTALQVMM-FGSTAIALELLKQGA--SPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-----CTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCC-----CCCccCCCCCccccccc-ccccccccccccccc--cccccccccccccccccc
Confidence            5555555555555555544221     12334455555555443 244555555555432  233344445555555555


Q ss_pred             CCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHh
Q 009452          107 QGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLS  186 (534)
Q Consensus       107 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~  186 (534)
                      .++.++++.+++.++++.. +|..|.||||+|+..|+.+++++|+ .++++ ..+|.+|+||||+|+..|+.+++++|++
T Consensus        78 ~~~~~~~~~~l~~~~~~n~-~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             ccccccccccccccccccc-ccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            5555555555555444322 2444555555555555555555444 33333 3344455555555555555555555543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.9e-23  Score=182.68  Aligned_cols=150  Identities=23%  Similarity=0.337  Sum_probs=134.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHH
Q 009452           24 DTPLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHI  103 (534)
Q Consensus        24 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~  103 (534)
                      .||||.|++.|+.++|+.|++.|++.       ..|..|.||||+|+..++.++++.++.....  ....+..+.++++.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-------~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   73 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-------TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS--RDARTKVDRTPLHM   73 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC--TTCCCTTCCCHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-------ccccCCCcccccccccccccccccccccccc--cccccccccccccc
Confidence            49999999999999999999999763       2488999999999999999999999886533  34456678899999


Q ss_pred             HHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHH
Q 009452          104 AAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKA  183 (534)
Q Consensus       104 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~  183 (534)
                      ++...+.++++++.+.+.+.. .+|.+|.||||+|+..|+.+++++|++.|+++ ...|.+|.||||+|+.+|+.|++++
T Consensus        74 ~~~~~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          74 AASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccceeeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHHHh
Confidence            999999999999999988765 45999999999999999999999999999998 6789999999999999999999987


Q ss_pred             H
Q 009452          184 L  184 (534)
Q Consensus       184 L  184 (534)
                      |
T Consensus       152 L  152 (153)
T d1awcb_         152 L  152 (153)
T ss_dssp             H
T ss_pred             C
Confidence            6

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=184.00  Aligned_cols=152  Identities=26%  Similarity=0.374  Sum_probs=129.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (534)
                      +.|+.||..|+.++|++|++.+ ..+.+..|..|+||||+|+ .|+.+++++|++.+.+... .+..|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV-QDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCccccccc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            4599999999999999999864 3456778889999999886 4888999999998887644 47789999999999999


Q ss_pred             HHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhhc
Q 009452          144 VEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVKV  221 (534)
Q Consensus       144 ~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~  221 (534)
                      .+++++++++++++ +..|.+|.||||+|+..|+.+++++|+ .++++. ..|.+|+||||+|++.|+.+++++|+++
T Consensus        81 ~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          81 LDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccc-ccccCCCCeeecccccccccccccccc-cccccc-ccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999887 557888999999999999999998877 566654 4588999999999999999999999863

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7e-23  Score=200.26  Aligned_cols=174  Identities=18%  Similarity=0.217  Sum_probs=111.6

Q ss_pred             ccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC-------HHHHHHHHhcCCCchhhhhcCCC
Q 009452           94 ARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH-------VEVVKFLLEKGSTLATIARSNGK  166 (534)
Q Consensus        94 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-------~~~v~~Ll~~~~~~~~~~~~~g~  166 (534)
                      |.+|+||||+||..|+.+++++|+++++++.. +|..|+||||.||..++       .++++++.+.    ....|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----LILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----GGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-CCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----hhhcccccC
Confidence            67788888888888888888888888877654 47888888888887654       2344444332    234567788


Q ss_pred             cHHHHHHHcCc----H--------HHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh--cCCccccccCCC
Q 009452          167 TALHSAARNGH----L--------EIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK--VEPVIINMVDAK  232 (534)
Q Consensus       167 tpLh~A~~~g~----~--------~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~--~~~~~in~~d~~  232 (534)
                      ||||.++..+.    .        .++.++...+..........+.++++.+........+..+..  .....+|.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            88887765432    2        234455566655555555666777776665554444433221  012347889999


Q ss_pred             CCcHHHHHHHcCcH--HHHhhhcCCChHhhhccCCcHHHHHH
Q 009452          233 GNSALHIATRKGRV--QKLLNINGVDKAVINKSRETALDTAE  272 (534)
Q Consensus       233 G~T~Lh~Aa~~~~~--~~ll~~~g~~~~~~n~~g~T~l~~A~  272 (534)
                      |+||||+|++.|+.  .++|++.|+|++.+|+.|.||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999986  68888999999999999999999885

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2.2e-22  Score=196.63  Aligned_cols=177  Identities=17%  Similarity=0.198  Sum_probs=119.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCH---HHHHHHHhhCccccccCCCCCCcHH
Q 009452           59 NQSGETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCL---EVLKILMEALPELLMTFDSSNTTAL  135 (534)
Q Consensus        59 n~~g~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~---~iv~~Ll~~~~~~~~~~d~~g~tpL  135 (534)
                      |..|+||||+||..|+.++|++|++.+  .+.+.+|..|+||||.||..++.   +.+..+++.........|..|+|||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~l  181 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  181 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHH
Confidence            788999999999999999999999987  45677899999999999987752   1222333322223344589999999


Q ss_pred             HHHHhcCC----HHH--------HHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHH-----HHHHhcCCCCcccCCCC
Q 009452          136 HTASSQGH----VEV--------VKFLLEKGSTLATIARSNGKTALHSAARNGHLEIV-----KALLSKEPGIVLRNDKK  198 (534)
Q Consensus       136 h~A~~~g~----~~~--------v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv-----~~Ll~~~~~~~~~~d~~  198 (534)
                      |+++..+.    ...        +.+++..+..........+.++++.+........+     .+++...   .+.+|.+
T Consensus       182 h~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---in~~D~~  258 (301)
T d1sw6a_         182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM---LNAQDSN  258 (301)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT---TTCCCTT
T ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC---ccCCCCC
Confidence            99886543    333        34455555444344444556666665544433322     2233332   2345899


Q ss_pred             CCcHHHHHHhCCCHHHHHHHhhcCCccccccCCCCCcHHHHHH
Q 009452          199 GQTALHMAVKGQSIELVDELVKVEPVIINMVDAKGNSALHIAT  241 (534)
Q Consensus       199 g~t~Lh~A~~~~~~~iv~~Ll~~~~~~in~~d~~G~T~Lh~Aa  241 (534)
                      |+||||+|++.|+.+++++|++ .+.+++.+|..|.||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999999999 67889999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.5e-22  Score=166.83  Aligned_cols=118  Identities=21%  Similarity=0.302  Sum_probs=61.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCC-CcHHHHHHhc
Q 009452           63 ETALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSN-TTALHTASSQ  141 (534)
Q Consensus        63 ~T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~  141 (534)
                      .++||+|+..|+.++|++|++.+  .+.+.++.+|.||||+|+ .|+.+++++|++++++.... |..+ .||||+|+..
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPVHDAARE   79 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcC--Cccccccccccccccccc-cccccccccccccccccccc-ccccccccccccccc
Confidence            35555555555555555555544  223444555555555443 45555555555555544333 3332 2455555555


Q ss_pred             CCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHH
Q 009452          142 GHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALL  185 (534)
Q Consensus       142 g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll  185 (534)
                      |+.+++++|+++|+++ +..|.+|.||||+|+++|+.+++++|+
T Consensus        80 g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5555555555555554 344555555555555555555555554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.8e-21  Score=164.06  Aligned_cols=120  Identities=22%  Similarity=0.254  Sum_probs=102.0

Q ss_pred             CCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCC-CcHHHHHHHc
Q 009452           97 GYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNG-KTALHSAARN  175 (534)
Q Consensus        97 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpLh~A~~~  175 (534)
                      +.++||+|+..|+.+++++|++++.++. .+|..|.||||.|+ .|+.+++++|+++|+++ +..+..| .||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-cccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            5689999999999999999999887764 45889999998764 68999999999999887 4445554 4799999999


Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCCHHHHHHHhh
Q 009452          176 GHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQSIELVDELVK  220 (534)
Q Consensus       176 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~  220 (534)
                      |+.+++++|+++|+++.. .|..|+||||+|+++|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~~~~-~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc-ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999888764 48899999999999999999999875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.8e-21  Score=160.63  Aligned_cols=120  Identities=27%  Similarity=0.317  Sum_probs=64.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (534)
                      ++|+.||..|+.++|++|++.+  .+.+.+|.+|+||||+|+..|+.+++++|++.+++.. ..|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g--~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC--CCccccccccccccccccccccccccccccccccccc-cccccCcccccccchhhH
Confidence            4455566666666666666554  2344455555666666666666666666655555433 235555555555555555


Q ss_pred             HHHHHHHHhcCCCchhhhhcCCCcHHHHH--HHcCcHHHHHHHHh
Q 009452          144 VEVVKFLLEKGSTLATIARSNGKTALHSA--ARNGHLEIVKALLS  186 (534)
Q Consensus       144 ~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A--~~~g~~~iv~~Ll~  186 (534)
                      .+++++|+++|+++......+|.||++.+  +..|+.+++++|++
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            55555555555555333233445544433  34455555555554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=8.9e-22  Score=164.18  Aligned_cols=105  Identities=30%  Similarity=0.387  Sum_probs=56.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCcccccccccCCCcHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCC
Q 009452           64 TALYVAAEYGYVDMVREMIRYHDTSLAGIKARNGYDAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGH  143 (534)
Q Consensus        64 T~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  143 (534)
                      |||++|++.|+.++|++|++.+  .+.+.++.+|+||||+|+..|+.+++++|++.++++.. +|..|+||||+|+..|+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g--~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~-~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTT--CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC-CSSSCSCHHHHHHTTTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhh--hccccccccccccccccccccccccccccccccceeee-cccccccchhhhhhcCc
Confidence            5555555555555555555544  23344455555555555555555555555555554432 25555555555555555


Q ss_pred             HHHHHHHHhcCCCchhhhhcCCCcHHHHH
Q 009452          144 VEVVKFLLEKGSTLATIARSNGKTALHSA  172 (534)
Q Consensus       144 ~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A  172 (534)
                      .+++++|+++|+++ +.+|.+|.||||+|
T Consensus        81 ~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a  108 (118)
T d1myoa_          81 VSCVKLLLSKGADK-TVKGPDGLTALEAT  108 (118)
T ss_dssp             CHHHHHHHTTCCCS-SSSSSSTCCCCCTC
T ss_pred             hhhhhhhhcccccc-eeeCCCCCCHHHHH
Confidence            55555555555554 34455555555554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=3.8e-21  Score=160.29  Aligned_cols=106  Identities=28%  Similarity=0.303  Sum_probs=77.3

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCcHHHHHHhCCC
Q 009452          132 TTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEPGIVLRNDKKGQTALHMAVKGQS  211 (534)
Q Consensus       132 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  211 (534)
                      .|||++|+..|+.+++++|+++|+++ +..+.+|.||||+|+..|+.+++++|+++++++.. +|..|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~-~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC-CSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccceeee-cccccccchhhhhhcCc
Confidence            36777777777777777777777765 45666777777777777777777777777776654 36777777777777777


Q ss_pred             HHHHHHHhhcCCccccccCCCCCcHHHHH
Q 009452          212 IELVDELVKVEPVIINMVDAKGNSALHIA  240 (534)
Q Consensus       212 ~~iv~~Ll~~~~~~in~~d~~G~T~Lh~A  240 (534)
                      .+++++|++ .+.+++.+|.+|+||||+|
T Consensus        81 ~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          81 VSCVKLLLS-KGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CHHHHHHHT-TCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhhc-ccccceeeCCCCCCHHHHH
Confidence            777777777 4566777777777777776

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.5e-20  Score=159.46  Aligned_cols=120  Identities=23%  Similarity=0.298  Sum_probs=104.8

Q ss_pred             cHHHHHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcH
Q 009452           99 DAFHIAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHL  178 (534)
Q Consensus        99 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  178 (534)
                      ++|+.|+..|+.++++.|+++++++. .+|.+|+||||+|+..|+.+++++|++.|++. +..|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcc-cccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            57899999999999999999988864 45889999999999999999999999999887 67888999999999999999


Q ss_pred             HHHHHHHhcCCCCcccCCCCCCcHHHHH--HhCCCHHHHHHHhh
Q 009452          179 EIVKALLSKEPGIVLRNDKKGQTALHMA--VKGQSIELVDELVK  220 (534)
Q Consensus       179 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~iv~~Ll~  220 (534)
                      +++++|+++|+++....+..|+|+++++  ++.|+.+++++|+.
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            9999999999888766556688887665  56788999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.5e-19  Score=157.50  Aligned_cols=127  Identities=20%  Similarity=0.193  Sum_probs=74.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCChhHHHHHHhcCCCCCcHHHHHHHc---CCHHHHHHHHHhCCcccccccccCCCcHHH
Q 009452           26 PLQSLVRTGSVELVLDMISSYGDMELREMLSKMNQSGETALYVAAEY---GYVDMVREMIRYHDTSLAGIKARNGYDAFH  102 (534)
Q Consensus        26 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~T~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  102 (534)
                      .|+.|++.+++..+..++..+.+..........+..|+||||+|+..   |+.+++++|++.+.  +++.+|.+|+||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga--din~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG--NLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS--CTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC--Chhhhhhhhccccc
Confidence            45677777777777777776654221111122344566666666653   45566666666552  34455666666666


Q ss_pred             HHHHCCCHHHHHHHHhhCccccccCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 009452          103 IAAKQGCLEVLKILMEALPELLMTFDSSNTTALHTASSQGHVEVVKFLLEKGS  155 (534)
Q Consensus       103 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~  155 (534)
                      +|+..|+.+++++|+++++++. .+|..|.||||+|+..|+.+++++|++.+.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccCcccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            6666666666666666665543 236666666666666666666666666543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.3e-18  Score=149.88  Aligned_cols=122  Identities=20%  Similarity=0.184  Sum_probs=68.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccc----ccccccCCCcHHHHHHHC---CCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009452           66 LYVAAEYGYVDMVREMIRYHDTSL----AGIKARNGYDAFHIAAKQ---GCLEVLKILMEALPELLMTFDSSNTTALHTA  138 (534)
Q Consensus        66 Lh~Aa~~g~~~iv~~Ll~~~~~~~----~~~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  138 (534)
                      |..|++.++...+..++..+.+..    ....+..|+||||+|+..   |+.+++++|+++++++. .+|..|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hhhhhhccccccc
Confidence            445666666666666666543211    111244456666666642   45566666666655542 3355666666666


Q ss_pred             HhcCCHHHHHHHHhcCCCchhhhhcCCCcHHHHHHHcCcHHHHHHHHhcCC
Q 009452          139 SSQGHVEVVKFLLEKGSTLATIARSNGKTALHSAARNGHLEIVKALLSKEP  189 (534)
Q Consensus       139 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~iv~~Ll~~~~  189 (534)
                      +..|+.+++++|+++|+++ ...|.+|.||||+|++.|+.+++++|++.+.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            6666666666666666555 4455556666666666666666666655443