Citrus Sinensis ID: 009526

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--

MDSSETREEESGSKDSNETNRLLPIPSPPSSTEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRGSDLSSNCFSLEMSKRYSNPGN

cccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHcccccccccccHHHHHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHHEEHHHEEccccEEHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHccHHHHHEHHccEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEEEHEEEcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEcccccccccccc

mdssetreeesgskdsnetnrllpipsppssteddeevafdsrEKILIVdadsastlnvdgdqvppfswkklwlftgpgflmsiafldpgnlegdlqsgaVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAwmfgdtqpsgkeLLVGVlvprlssktiRQAVGVVGCVIMPHNVFLHSALvqsrnidpkkkgRVQEALNYYSIESSVALLVSFMINLFLTTVFAkgfygtkqansiglvnagqylqekygggylpILYIWGIGLlaagqsstitgtyAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITrgsdlssncfslemskrysnpgn

mdssetreeesgskdsnetnrllpipsppsstedDEEVAFDSREKILIVdadsastlnvdgdqvPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALvqsrnidpkKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRGSDLSSNCFslemskrysnpgn

********************************************KILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRGSDLSSNCF*************

*******************************************************************SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALV***************ALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRGSDLSSNC**************

*******************NRLLPIPS************FDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRGSDLSSNCFSLEMS********

*******************************************************TLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRGSDLSSNCFSLEM*********

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		532	2.2.26 [Sep-21-2011]
Q9C6B2		530	Metal transporter Nramp2	yes	no	0.932	0.935	0.805	0.0
Q9SNV9		509	Metal transporter Nramp3	no	no	0.904	0.944	0.763	0.0
Q9SN36		530	Metal transporter Nramp5	no	no	0.975	0.979	0.716	0.0
Q9FN18		512	Metal transporter Nramp4	no	no	0.915	0.951	0.722	0.0
Q2QN30		541	Metal transporter Nramp6	yes	no	0.947	0.931	0.718	0.0
Q10Q65		524	Metal transporter Nramp2	no	no	0.911	0.925	0.688	0.0
Q869V1		533	Metal transporter nramp1	yes	no	0.721	0.720	0.566	1e-127
P49283		596	Protein Malvolio OS=Droso	yes	no	0.898	0.802	0.457	1e-116
P51027		555	Natural resistance-associ	yes	no	0.840	0.805	0.481	1e-115
P49282		568	Natural resistance-associ	yes	no	0.847	0.794	0.473	1e-114

>sp\|Q9C6B2\|NRAM2_ARATH Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1	Back alignment and function desciption

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/499 (80%), Positives = 451/499 (90%), Gaps = 3/499 (0%)

Query: 32  TEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLWLFTGPGFLMSIAFLDPGN 91
           T+ + E AF++ EKILIVD +S       GD  PPFSW+KLWLFTGPGFLMSIAFLDPGN
Sbjct: 29  TDSESEAAFETNEKILIVDFESPDD-PTTGDTPPPFSWRKLWLFTGPGFLMSIAFLDPGN 87

Query: 92  LEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVL 151
           LEGDLQ+GA+AGYSLLWLLMWAT MGLLIQ+LSARVGVATGRHLAELCR+EYP WAR+VL
Sbjct: 88  LEGDLQAGAIAGYSLLWLLMWATAMGLLIQMLSARVGVATGRHLAELCRDEYPTWARYVL 147

Query: 152 WFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEA 211
           W MAE+ALIGADIQEVIGSAIAIQILS G LPLWAGV+ITA DCF+FLFLENYGVRKLEA
Sbjct: 148 WSMAELALIGADIQEVIGSAIAIQILSRGFLPLWAGVVITASDCFLFLFLENYGVRKLEA 207

Query: 212 VFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNVFLH 271
           VFAVLIATM LSFAWMFG+T+PSGKEL++G+L+PRLSSKTIRQAVGVVGCVIMPHNVFLH
Sbjct: 208 VFAVLIATMGLSFAWMFGETKPSGKELMIGILLPRLSSKTIRQAVGVVGCVIMPHNVFLH 267

Query: 272 SALVQSRNIDPKKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIG 331
           SALVQSR IDPK+K RVQEALNYY IESSVAL +SFMINLF+TTVFAKGFYGT++AN+IG
Sbjct: 268 SALVQSRKIDPKRKSRVQEALNYYLIESSVALFISFMINLFVTTVFAKGFYGTEKANNIG 327

Query: 332 LVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRA 391
           LVNAGQYLQEK+GGG LPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNL +KKW+RA
Sbjct: 328 LVNAGQYLQEKFGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRA 387

Query: 392 LITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVF 451
           +ITRSCAIVPTMIVA++FNTSEASLD+LNEWLNVLQS+QIPFAL+PLLTLVSKE++MG F
Sbjct: 388 VITRSCAIVPTMIVAIVFNTSEASLDVLNEWLNVLQSVQIPFALLPLLTLVSKEEIMGDF 447

Query: 452 RIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRG 511
           +IGP+L+R+AWTVAALVM+INGYLLLDFFVSEV G LFG  V   T AY+AFI+YLI+  
Sbjct: 448 KIGPILQRIAWTVAALVMIINGYLLLDFFVSEVDGFLFGVTVCVWTTAYIAFIVYLISHS 507

Query: 512 S--DLSSNCFSLEMSKRYS 528
           +      +  S+E+ KR S
Sbjct: 508 NFFPSPWSSSSIELPKRVS 526

Seems to be involved in iron uptake.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SNV9\|NRAM3_ARATH Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2	Back alignment and function description

>sp\|Q9SN36\|NRAM5_ARATH Metal transporter Nramp5 OS=Arabidopsis thaliana GN=NRAMP5 PE=2 SV=1	Back alignment and function description

>sp\|Q9FN18\|NRAM4_ARATH Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1	Back alignment and function description

>sp\|Q2QN30\|NRAM6_ORYSJ Metal transporter Nramp6 OS=Oryza sativa subsp. japonica GN=NRAMP6 PE=2 SV=1	Back alignment and function description

>sp\|Q10Q65\|NRAM2_ORYSJ Metal transporter Nramp2 OS=Oryza sativa subsp. japonica GN=NRAMP2 PE=2 SV=1	Back alignment and function description

>sp\|Q869V1\|NRAM1_DICDI Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1	Back alignment and function description

>sp\|P49283\|MVL_DROME Protein Malvolio OS=Drosophila melanogaster GN=Mvl PE=2 SV=2	Back alignment and function description

>sp\|P51027\|NRAM1_CHICK Natural resistance-associated macrophage protein 1 OS=Gallus gallus GN=SLC11A1 PE=2 SV=1	Back alignment and function description

>sp\|P49282\|NRAM2_MOUSE Natural resistance-associated macrophage protein 2 OS=Mus musculus GN=Slc11a2 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
225458772		536	PREDICTED: metal transporter Nramp2-like	0.988	0.981	0.810	0.0
297852308		532	NRAMP2 [Arabidopsis lyrata subsp. lyrata	0.954	0.954	0.801	0.0
15220149		530	metal transporter Nramp2 [Arabidopsis th	0.932	0.935	0.805	0.0
5231117		530	Nramp2 [Arabidopsis thaliana]	0.932	0.935	0.801	0.0
358345512		528	Natural resistance-associated macrophage	0.958	0.965	0.794	0.0
224067238		481	nramp transporter [Populus trichocarpa]	0.902	0.997	0.839	0.0
356510529		518	PREDICTED: metal transporter Nramp2-like	0.971	0.998	0.773	0.0
356518118		522	PREDICTED: metal transporter Nramp2-like	0.911	0.929	0.807	0.0
255567945		509	natural resistance-associated macrophage	0.932	0.974	0.768	0.0
356496941		507	PREDICTED: metal transporter Nramp3-like	0.900	0.944	0.788	0.0

>gi\|225458772\|ref\|XP_002285122.1\| PREDICTED: metal transporter Nramp2-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/528 (81%), Positives = 471/528 (89%), Gaps = 2/528 (0%)

Query: 7   REEESGSKDSNETNRLLPIPSPPSSTE--DDEEVAFDSREKILIVDADSASTLNVDGDQV 64
           +E  +G     E NRLLP  SP S +   D+EEVA++SREKI IVD +  +  ++D    
Sbjct: 9   QEPPNGDGKDEEANRLLPSKSPSSLSPSSDEEEVAYESREKISIVDLEGETLESLDASAT 68

Query: 65  PPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLS 124
           PPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQ+GA+AGYSLLWLLMWATVMGLLIQLLS
Sbjct: 69  PPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATVMGLLIQLLS 128

Query: 125 ARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPL 184
           ARVGVATGRHLAELCREEYP WA  +LWFMAE+ALIGADIQEVIGSAIAI+ILS G LPL
Sbjct: 129 ARVGVATGRHLAELCREEYPTWAGRLLWFMAELALIGADIQEVIGSAIAIKILSRGFLPL 188

Query: 185 WAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLV 244
           WAGV+ITA DCFIFLFLENYGVRKLEAVFAV IATM LSFAWMFGD +PSG+ELL+GVLV
Sbjct: 189 WAGVVITASDCFIFLFLENYGVRKLEAVFAVFIATMGLSFAWMFGDAKPSGRELLIGVLV 248

Query: 245 PRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALL 304
           P+LSSKTIRQAVGVVGCVIMPHNVFLHSALVQSR IDP +KGRVQEALNYYSIES+VALL
Sbjct: 249 PKLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPHRKGRVQEALNYYSIESTVALL 308

Query: 305 VSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQS 364
           +SFMINLF+TTVFAKGFYGTKQA+ IGLVNAGQYL+EKYGGG  PILY+WGIGLLAAGQS
Sbjct: 309 ISFMINLFVTTVFAKGFYGTKQADGIGLVNAGQYLEEKYGGGVFPILYVWGIGLLAAGQS 368

Query: 365 STITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLN 424
           STITGTYAGQFIMGGFLNL +KKWLRALITRS AIVPTMIVAL+FN SEASLD+LNEWLN
Sbjct: 369 STITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTMIVALVFNRSEASLDVLNEWLN 428

Query: 425 VLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEV 484
           VLQS+QIPFALIPLLTLVSKEQVMGVF++GP+LER+AWTVAALV+VINGYLLLDFF++EV
Sbjct: 429 VLQSMQIPFALIPLLTLVSKEQVMGVFKVGPLLERVAWTVAALVIVINGYLLLDFFMAEV 488

Query: 485 KGLLFGFLVFTGTAAYVAFIIYLITRGSDLSSNCFSLEMSKRYSNPGN 532
            G+LFGFLV  GTA YVAFI YL++ G  LSS  FSL  SKR+   G+
Sbjct: 489 DGVLFGFLVCAGTALYVAFIFYLVSHGGVLSSTWFSLVTSKRFPFIGS 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297852308\|ref\|XP_002894035.1\| NRAMP2 [Arabidopsis lyrata subsp. lyrata] gi\|297339877\|gb\|EFH70294.1\| NRAMP2 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15220149|ref|NP_175157.1| metal transporter Nramp2 [Arabidopsis thaliana] gi|29839611|sp|Q9C6B2.1|NRAM2_ARATH RecName: Full=Metal transporter Nramp2; Short=AtNramp2 gi|12325401|gb|AAG52643.1|AC079677_7 stress response protein Nramp2; 19015-21280 [Arabidopsis thaliana] gi|15294258|gb|AAK95306.1|AF410320_1 At1g47240/F8G22_4 [Arabidopsis thaliana] gi|20857010|gb|AAM26695.1| At1g47240/F8G22_4 [Arabidopsis thaliana] gi|332194021|gb|AEE32142.1| metal transporter Nramp2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|5231117\|gb\|AAD41078.1\|AF141204_1 Nramp2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|358345512|ref|XP_003636821.1| Natural resistance-associated macrophage protein [Medicago truncatula] gi|358348881|ref|XP_003638470.1| Natural resistance-associated macrophage protein [Medicago truncatula] gi|355502756|gb|AES83959.1| Natural resistance-associated macrophage protein [Medicago truncatula] gi|355504405|gb|AES85608.1| Natural resistance-associated macrophage protein [Medicago truncatula]

Back alignment and taxonomy information

>gi\|224067238\|ref\|XP_002302424.1\| nramp transporter [Populus trichocarpa] gi\|222844150\|gb\|EEE81697.1\| nramp transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356510529\|ref\|XP_003523990.1\| PREDICTED: metal transporter Nramp2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356518118\|ref\|XP_003527729.1\| PREDICTED: metal transporter Nramp2-like [Glycine max]	Back alignment and taxonomy information

>gi\|255567945\|ref\|XP_002524950.1\| natural resistance-associated macrophage protein, putative [Ricinus communis] gi\|223535785\|gb\|EEF37447.1\| natural resistance-associated macrophage protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356496941\|ref\|XP_003517323.1\| PREDICTED: metal transporter Nramp3-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
TAIR\|locus:2036751		530	NRAMP2 "NRAMP metal ion transp	0.956	0.960	0.798	2e-221
TAIR\|locus:2045344		509	NRAMP3 "natural resistance-ass	0.924	0.966	0.759	7.1e-203
TAIR\|locus:2124172		530	NRAMP5 [Arabidopsis thaliana (	0.973	0.977	0.721	1.5e-200
TAIR\|locus:2158242		512	NRAMP4 "natural resistance ass	0.894	0.929	0.746	4.9e-195
DICTYBASE\|DDB_G0276973		533	nramp1 "solute carrier family	0.874	0.872	0.504	4.6e-121
UNIPROTKB\|A7MBI9		562	SLC11A2 "Uncharacterized prote	0.546	0.517	0.538	1.4e-114
ZFIN\|ZDB-GENE-021115-1		547	slc11a2 "solute carrier family	0.539	0.524	0.543	3.8e-114
UNIPROTKB\|P49281		568	SLC11A2 "Natural resistance-as	0.584	0.547	0.522	1.6e-113
UNIPROTKB\|F1Q2X9		568	SLC11A2 "Uncharacterized prote	0.567	0.531	0.523	2.1e-113
MGI\|MGI:1345279		568	Slc11a2 "solute carrier family	0.597	0.559	0.498	3.4e-113

TAIR\|locus:2036751 NRAMP2 "NRAMP metal ion transporter 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2138 (757.7 bits), Expect = 2.0e-221, P = 2.0e-221
 Identities = 413/517 (79%), Positives = 463/517 (89%)

Query:    18 ETNRLLPIPSPPS----STEDDEEVAFDSREKILIVDADSASTLNVDGDQVPPFSWKKLW 73
             E +RLLP P PPS    ST+ + E AF++ EKILIVD +S       GD  PPFSW+KLW
Sbjct:    12 EEDRLLP-PPPPSQSLPSTDSESEAAFETNEKILIVDFESPDDPTT-GDTPPPFSWRKLW 69

Query:    74 LFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGR 133
             LFTGPGFLMSIAFLDPGNLEGDLQ+GA+AGYSLLWLLMWAT MGLLIQ+LSARVGVATGR
Sbjct:    70 LFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQMLSARVGVATGR 129

Query:   134 HLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITAL 193
             HLAELCR+EYP WAR+VLW MAE+ALIGADIQEVIGSAIAIQILS G LPLWAGV+ITA 
Sbjct:   130 HLAELCRDEYPTWARYVLWSMAELALIGADIQEVIGSAIAIQILSRGFLPLWAGVVITAS 189

Query:   194 DCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPRLSSKTIR 253
             DCF+FLFLENYGVRKLEAVFAVLIATM LSFAWMFG+T+PSGKEL++G+L+PRLSSKTIR
Sbjct:   190 DCFLFLFLENYGVRKLEAVFAVLIATMGLSFAWMFGETKPSGKELMIGILLPRLSSKTIR 249

Query:   254 QAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALLVSFMINLFL 313
             QAVGVVGCVIMPHNVFLHSALVQSR IDPK+K RVQEALNYY IESSVAL +SFMINLF+
Sbjct:   250 QAVGVVGCVIMPHNVFLHSALVQSRKIDPKRKSRVQEALNYYLIESSVALFISFMINLFV 309

Query:   314 TTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAG 373
             TTVFAKGFYGT++AN+IGLVNAGQYLQEK+GGG LPILYIWGIGLLAAGQSSTITGTYAG
Sbjct:   310 TTVFAKGFYGTEKANNIGLVNAGQYLQEKFGGGLLPILYIWGIGLLAAGQSSTITGTYAG 369

Query:   374 QFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPF 433
             QFIMGGFLNL +KKW+RA+ITRSCAIVPTMIVA++FNTSEASLD+LNEWLNVLQS+QIPF
Sbjct:   370 QFIMGGFLNLRLKKWMRAVITRSCAIVPTMIVAIVFNTSEASLDVLNEWLNVLQSVQIPF 429

Query:   434 ALIPLLTLVSKEQVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLV 493
             AL+PLLTLVSKE++MG F+IGP+L+R+AWTVAALVM+INGYLLLDFFVSEV G LFG  V
Sbjct:   430 ALLPLLTLVSKEEIMGDFKIGPILQRIAWTVAALVMIINGYLLLDFFVSEVDGFLFGVTV 489

Query:   494 FTGTAAYVAFIIYLITRGSDLSS--NCFSLEMSKRYS 528
                T AY+AFI+YLI+  +   S  +  S+E+ KR S
Sbjct:   490 CVWTTAYIAFIVYLISHSNFFPSPWSSSSIELPKRVS 526

GO:0005215 "transporter activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=ISS;NAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=ISS;NAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

TAIR\|locus:2045344 NRAMP3 "natural resistance-associated macrophage protein 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124172 NRAMP5 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158242 NRAMP4 "natural resistance associated macrophage protein 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276973 nramp1 "solute carrier family 11 member 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|A7MBI9 SLC11A2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-021115-1 slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|P49281 SLC11A2 "Natural resistance-associated macrophage protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q2X9 SLC11A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1345279 Slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49283	MVL_DROME	No assigned EC number	0.4576	0.8984	0.8020	yes	no
O77741	NRAM1_PIG	No assigned EC number	0.46	0.8590	0.8494	yes	no
Q4L5B9	MNTH_STAHJ	No assigned EC number	0.3452	0.8082	0.9641	yes	no
P51027	NRAM1_CHICK	No assigned EC number	0.4811	0.8402	0.8054	yes	no
Q21434	NRAML_CAEEL	No assigned EC number	0.4318	0.9078	0.8594	yes	no
Q869V1	NRAM1_DICDI	No assigned EC number	0.5663	0.7218	0.7204	yes	no
Q03D26	MNTH_LACC3	No assigned EC number	0.3588	0.8233	0.9563	yes	no
Q9FN18	NRAM4_ARATH	No assigned EC number	0.7228	0.9154	0.9511	no	no
Q2QN30	NRAM6_ORYSJ	No assigned EC number	0.7189	0.9473	0.9316	yes	no
Q9SN36	NRAM5_ARATH	No assigned EC number	0.7167	0.9755	0.9792	no	no
Q98I99	MNTH_RHILO	No assigned EC number	0.375	0.8214	0.9625	yes	no
Q9SNV9	NRAM3_ARATH	No assigned EC number	0.7639	0.9041	0.9449	no	no
B3W6P3	MNTH_LACCB	No assigned EC number	0.3632	0.8233	0.9563	yes	no
Q9C6B2	NRAM2_ARATH	No assigned EC number	0.8056	0.9323	0.9358	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		532
TIGR01197		390	TIGR01197, nramp, NRAMP (natural resistance-associ	1e-137
PRK00701		439	PRK00701, PRK00701, manganese transport protein Mn	1e-124
pfam01566		364	pfam01566, Nramp, Natural resistance-associated ma	1e-114
COG1914		416	COG1914, MntH, Mn2+ and Fe2+ transporters of the N	3e-85

>gnl\|CDD\|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters	Back alignment and domain information

 Score =  401 bits (1032), Expect = e-137
 Identities = 178/397 (44%), Positives = 245/397 (61%), Gaps = 25/397 (6%)

Query: 70  KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGV 129
           +KLW F GPGFLMSIA++DPGN   DLQ+GA AGY LLW+L+ + +M LL+Q L AR+GV
Sbjct: 1   RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGV 60

Query: 130 ATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVI 189
            TG  LAE+CRE YP   R  LW +AE+A+I  D+ EVIG+AIA+ +LSH  +PLW GV+
Sbjct: 61  VTGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSH--IPLWGGVL 118

Query: 190 ITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPR--- 246
           IT +D F+FLFL+  G+R LEA  A+L+  +A+ FA+     +P   ++L G  VP    
Sbjct: 119 ITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAKPGQVKVLFGGFVPSCAV 178

Query: 247 LSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALLVS 306
             +  + QAVG++G  +MPH+++LHSALVQSR +D   K  V EA  Y  IE+++AL VS
Sbjct: 179 FGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVS 238

Query: 307 FMINLFLTTVFAKGFYG---------------TKQANSIGLVNAGQYLQEKYGGGYLPIL 351
           F IN F+  +F    +                   A++  L + G  L   +        
Sbjct: 239 FSINEFVIALFTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCLFSPA---AG 295

Query: 352 YIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNT 411
           YI+ +GLLAAGQSS + GTY+GQF+M GFLN     WLR LITR+ AI+P ++VA     
Sbjct: 296 YIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGR 355

Query: 412 SEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVM 448
               L        V+ S+ +PFALIPL+   S +++M
Sbjct: 356 E--GLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390

This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival [Transport and binding proteins, Cations and iron carrying compounds]. Length = 390

>gnl\|CDD\|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed	Back alignment and domain information

>gnl\|CDD\|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein	Back alignment and domain information

>gnl\|CDD\|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		532
KOG1291		503	consensus Mn2+ and Fe2+ transporters of the NRAMP	100.0
PRK00701		439	manganese transport protein MntH; Reviewed	100.0
TIGR01197		390	nramp NRAMP (natural resistance-associated macroph	100.0
COG1914		416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	100.0
PF01566		358	Nramp: Natural resistance-associated macrophage pr	100.0
PF03222		394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.72
TIGR00813		407	sss transporter, SSS family. have different number	98.69
PRK15419		502	proline:sodium symporter PutP; Provisional	98.64
TIGR02119		471	panF sodium/pantothenate symporter. Pantothenate (	98.63
PF00474		406	SSF: Sodium:solute symporter family; InterPro: IPR	98.63
PRK15132		403	tyrosine transporter TyrP; Provisional	98.56
PRK13629		443	threonine/serine transporter TdcC; Provisional	98.53
TIGR02121		487	Na_Pro_sym sodium/proline symporter. This family c	98.42
PRK09442		483	panF sodium/panthothenate symporter; Provisional	98.36
PRK09664		415	tryptophan permease TnaB; Provisional	98.29
COG1457		442	CodB Purine-cytosine permease and related proteins	98.29
TIGR02711		549	symport_actP cation/acetate symporter ActP. Member	98.23
PRK09395		551	actP acetate permease; Provisional	98.17
PRK12488		549	acetate permease; Provisional	98.1
PRK10483		414	tryptophan permease; Provisional	98.1
PRK11375		484	allantoin permease; Provisional	98.02
TIGR00814		397	stp serine transporter. The HAAAP family includes	98.0
TIGR00837		381	araaP aromatic amino acid transport protein. aroma	97.96
PF01235		416	Na_Ala_symp: Sodium:alanine symporter family; Inte	97.96
TIGR00930		953	2a30 K-Cl cotransporter.	97.94
COG0733		439	Na+-dependent transporters of the SNF family [Gene	97.93
COG0591		493	PutP Na+/proline symporter [Amino acid transport a	97.91
PRK10249		458	phenylalanine transporter; Provisional	97.77
COG3949		349	Uncharacterized membrane protein [Function unknown	97.74
TIGR00800		442	ncs1 NCS1 nucleoside transporter family. The NCS1	97.68
PRK11049		469	D-alanine/D-serine/glycine permease; Provisional	97.56
PRK10484		523	putative transporter; Provisional	97.54
PRK11017		404	codB cytosine permease; Provisional	97.48
TIGR03648		552	Na_symport_lg probable sodium:solute symporter, VC	97.47
PRK10238		456	aromatic amino acid transporter; Provisional	97.39
TIGR02358		386	thia_cytX probable hydroxymethylpyrimidine transpo	97.34
TIGR00796		378	livcs branched-chain amino acid uptake carrier. tr	97.33
TIGR00835		425	agcS amino acid carrier protein. Members of the AG	97.32
TIGR00907		482	2A0304 amino acid permease (GABA permease).	97.31
PF02133		440	Transp_cyt_pur: Permease for cytosine/purines, ura	97.21
PRK11387		471	S-methylmethionine transporter; Provisional	97.19
PRK15049		499	L-asparagine permease; Provisional	97.11
TIGR00910		507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.08
TIGR00905		473	2A0302 transporter, basic amino acid/polyamine ant	96.96
COG0814		415	SdaC Amino acid permeases [Amino acid transport an	96.91
KOG1289		550	consensus Amino acid transporters [Amino acid tran	96.7
TIGR00911		501	2A0308 L-type amino acid transporter.	96.61
TIGR03810		468	arg_ornith_anti arginine/ornithine antiporter. Mem	96.5
PRK11021		410	putative transporter; Provisional	96.32
COG4147		529	DhlC Predicted symporter [General function predict	96.28
TIGR00913		478	2A0310 amino acid permease (yeast).	96.27
COG1953		497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	96.27
TIGR01773		452	GABAperm gamma-aminobutyrate permease. GabP is hig	96.26
PRK10746		461	putative transport protein YifK; Provisional	96.25
PRK10197		446	gamma-aminobutyrate transporter; Provisional	96.22
COG4145		473	PanF Na+/panthothenate symporter [Coenzyme metabol	95.95
PF13520		426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	95.83
COG1113		462	AnsP Gamma-aminobutyrate permease and related perm	95.67
TIGR00909		429	2A0306 amino acid transporter.	95.61
TIGR00912		359	2A0309 spore germination protein (amino acid perme	95.57
TIGR00908		442	2A0305 ethanolamine permease. The three genes used	95.28
PRK11357		445	frlA putative fructoselysine transporter; Provisio	94.92
TIGR03813		474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	94.77
COG1115		452	AlsT Na+/alanine symporter [Amino acid transport a	94.73
PF00324		478	AA_permease: Amino acid permease; InterPro: IPR004	94.45
PRK10580		457	proY putative proline-specific permease; Provision	94.17
PRK15015		701	carbon starvation protein A; Provisional	93.06
PF02554		376	CstA: Carbon starvation protein CstA; InterPro: IP	93.01
PF03845		320	Spore_permease: Spore germination protein; InterPr	92.49
PF05525		427	Branch_AA_trans: Branched-chain amino acid transpo	91.8
PRK10655		438	potE putrescine transporter; Provisional	91.5
PRK10435		435	cadB lysine/cadaverine antiporter; Provisional	90.47
TIGR03428		475	ureacarb_perm permease, urea carboxylase system. A	89.94
COG0833		541	LysP Amino acid transporters [Amino acid transport	88.77
PRK10644		445	arginine:agmatin antiporter; Provisional	88.5
PRK10836		489	lysine transporter; Provisional	87.63
PRK15433		439	branched-chain amino acid transport system 2 carri	83.48
PF00209		523	SNF: Sodium:neurotransmitter symporter family; Int	82.61
COG1966		575	CstA Carbon starvation protein, predicted membrane	82.6
KOG1286		554	consensus Amino acid transporters [Amino acid tran	81.48

>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=7.2e-115  Score=900.24  Aligned_cols=450  Identities=61%  Similarity=0.985  Sum_probs=427.6

Q ss_pred             CCCcccHHHHHHhhchHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhh
Q 009526           63 QVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREE  142 (532)
Q Consensus        63 ~~~~~~~~~l~~~lGPG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~  142 (532)
                      +.++++|||+|+|+||||+||+||+||||++||+|+||++||+|||++++++++++++|++++|+|+||||||+|.||+|
T Consensus        19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~   98 (503)
T KOG1291|consen   19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE   98 (503)
T ss_pred             CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 009526          143 YPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMAL  222 (532)
Q Consensus       143 y~~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l  222 (532)
                      ||||+|+.+|+++|++++++|+|||+|+|+|+|+|++  +|+|+||++|++||+++++++|||.||+|.++.+++..|++
T Consensus        99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~--IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai  176 (503)
T KOG1291|consen   99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN--IPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAI  176 (503)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChhhhhhcccccCCC---hhHHHHHHHHHcccchhHHHHHHHHHhhhhcCCCCcccchHHhhhhHHHHH
Q 009526          223 SFAWMFGDTQPSGKELLVGVLVPRLS---SKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIES  299 (532)
Q Consensus       223 ~F~~~~~~~~P~~~~v~~G~~vP~~~---~~~l~~avaiiGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l~~~~~Ds  299 (532)
                      ||.+++..++|+.+|++.|.++|+++   ++.+++++|++||+|||||+|+||++||+|+.|++.+++++|+++|..+|+
T Consensus       177 ~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies  256 (503)
T KOG1291|consen  177 SFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIES  256 (503)
T ss_pred             HHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHH
Confidence            99999999999999999999999987   789999999999999999999999999999999988888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-hhhccCCCcccc-------------cCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchh
Q 009526          300 SVALLVSFMINLFLTTVF-AKGFYGTKQANS-------------IGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSS  365 (532)
Q Consensus       300 ~i~l~vs~lIn~~i~~v~-A~~~~~~~~~~~-------------~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sS  365 (532)
                      .++++++|.||.+++.++ |+.||++.+.+.             .++.+++.+|++.+|+   ++.++|++|+++|||||
T Consensus       257 ~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~---~a~~Ifai~lLasGQSs  333 (503)
T KOG1291|consen  257 AIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGP---AALYIFAIGLLASGQSS  333 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhcc---HHHHHHHHHHHHCCCcc
Confidence            999999999999999999 999998775432             3477889999999999   99999999999999999


Q ss_pred             hhhhhhhHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009526          366 TITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKE  445 (532)
Q Consensus       366 tit~t~ag~~v~~gfl~~~~~~~~r~l~t~~iaivpal~v~~~~g~~~~~l~~l~~~~~vl~s~~LPfalipll~l~n~k  445 (532)
                      ++||||+||++||||+||+++||.||+.||++||+|++++++.+|.+  +++++++++||+|+++|||+++|++.|+|+|
T Consensus       334 titgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~--~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r  411 (503)
T KOG1291|consen  334 TITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGED--GLSGLNDFLNVLQSLQLPFAVIPLLTFTSSR  411 (503)
T ss_pred             cceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcc--cHHHHHHHHHHHHHHhhhHHHhhHHhhhccH
Confidence            99999999999999999999999999999999999999999988854  5999999999999999999999999999999


Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 009526          446 QVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVK-GLLFGFLVFTGTAAYVAFIIYLITRGSDLSSNCF  519 (532)
Q Consensus       446 ~iMG~~~~~~~~~il~~i~~~~i~~lni~~v~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~  519 (532)
                      ++||+|+|++..+..+|.+..+++.+|.|++++.+..... ++..+..+....++|++|++||+.++.+....|.
T Consensus       412 ~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~~~~~~~~~~~~~~~~~~~y~~~i~yL~~~~l~~~~~~~  486 (503)
T KOG1291|consen  412 KIMGVFKNGLVTEELTWTVAALVLGINGYFLVSFFWSLVGKHSKIVVTVNVWTLAYLAFILYLAATCLNAYSIIS  486 (503)
T ss_pred             HHhhhhccCccceeeeehheeeeeeeeeEEeeeehhhhcCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999988866655 4557788889999999999999999865434443

>PRK00701 manganese transport protein MntH; Reviewed	Back alignment and domain information

>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters	Back alignment and domain information

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2	Back alignment and domain information

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>TIGR00813 sss transporter, SSS family	Back alignment and domain information

>PRK15419 proline:sodium symporter PutP; Provisional	Back alignment and domain information

>TIGR02119 panF sodium/pantothenate symporter	Back alignment and domain information

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells	Back alignment and domain information

>PRK15132 tyrosine transporter TyrP; Provisional	Back alignment and domain information

>PRK13629 threonine/serine transporter TdcC; Provisional	Back alignment and domain information

>TIGR02121 Na_Pro_sym sodium/proline symporter	Back alignment and domain information

>PRK09442 panF sodium/panthothenate symporter; Provisional	Back alignment and domain information

>PRK09664 tryptophan permease TnaB; Provisional	Back alignment and domain information

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR02711 symport_actP cation/acetate symporter ActP	Back alignment and domain information

>PRK09395 actP acetate permease; Provisional	Back alignment and domain information

>PRK12488 acetate permease; Provisional	Back alignment and domain information

>PRK10483 tryptophan permease; Provisional	Back alignment and domain information

>PRK11375 allantoin permease; Provisional	Back alignment and domain information

>TIGR00814 stp serine transporter	Back alignment and domain information

>TIGR00837 araaP aromatic amino acid transport protein	Back alignment and domain information

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups	Back alignment and domain information

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]	Back alignment and domain information

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>PRK10249 phenylalanine transporter; Provisional	Back alignment and domain information

>COG3949 Uncharacterized membrane protein [Function unknown]	Back alignment and domain information

>TIGR00800 ncs1 NCS1 nucleoside transporter family	Back alignment and domain information

>PRK11049 D-alanine/D-serine/glycine permease; Provisional	Back alignment and domain information

>PRK10484 putative transporter; Provisional	Back alignment and domain information

>PRK11017 codB cytosine permease; Provisional	Back alignment and domain information

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily	Back alignment and domain information

>PRK10238 aromatic amino acid transporter; Provisional	Back alignment and domain information

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX	Back alignment and domain information

>TIGR00796 livcs branched-chain amino acid uptake carrier	Back alignment and domain information

>TIGR00835 agcS amino acid carrier protein	Back alignment and domain information

>TIGR00907 2A0304 amino acid permease (GABA permease)	Back alignment and domain information

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines	Back alignment and domain information

>PRK11387 S-methylmethionine transporter; Provisional	Back alignment and domain information

>PRK15049 L-asparagine permease; Provisional	Back alignment and domain information

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter	Back alignment and domain information

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family	Back alignment and domain information

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00911 2A0308 L-type amino acid transporter	Back alignment and domain information

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter	Back alignment and domain information

>PRK11021 putative transporter; Provisional	Back alignment and domain information

>COG4147 DhlC Predicted symporter [General function prediction only]	Back alignment and domain information

>TIGR00913 2A0310 amino acid permease (yeast)	Back alignment and domain information

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>TIGR01773 GABAperm gamma-aminobutyrate permease	Back alignment and domain information

>PRK10746 putative transport protein YifK; Provisional	Back alignment and domain information

>PRK10197 gamma-aminobutyrate transporter; Provisional	Back alignment and domain information

>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]	Back alignment and domain information

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A	Back alignment and domain information

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00909 2A0306 amino acid transporter	Back alignment and domain information

>TIGR00912 2A0309 spore germination protein (amino acid permease)	Back alignment and domain information

>TIGR00908 2A0305 ethanolamine permease	Back alignment and domain information

>PRK11357 frlA putative fructoselysine transporter; Provisional	Back alignment and domain information

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter	Back alignment and domain information

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PRK10580 proY putative proline-specific permease; Provisional	Back alignment and domain information

>PRK15015 carbon starvation protein A; Provisional	Back alignment and domain information

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex	Back alignment and domain information

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))	Back alignment and domain information

>PRK10655 potE putrescine transporter; Provisional	Back alignment and domain information

>PRK10435 cadB lysine/cadaverine antiporter; Provisional	Back alignment and domain information

>TIGR03428 ureacarb_perm permease, urea carboxylase system	Back alignment and domain information

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

>PRK10644 arginine:agmatin antiporter; Provisional	Back alignment and domain information

>PRK10836 lysine transporter; Provisional	Back alignment and domain information

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional	Back alignment and domain information

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses	Back alignment and domain information

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		532
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 64/468 (13%), Positives = 128/468 (27%), Gaps = 148/468 (31%)

Query: 15  DSNETNRLLPIPSPPSSTED-------------------------DEEV--AFDSREKIL 47
           D N T+R     +                                + +   AF+   KIL
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 48  IVDADSASTLNVDGDQVPPFSWKKL-WLFTGP---GFLMSIAFLDPGNLEGDLQSGAVAG 103
           +       T  +        S        T       L+      P     DL    +  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVL-- 323

Query: 104 YSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREE---YPNWARFVLWFMAEVALI 160
                     T     + +            +AE  R+    + NW              
Sbjct: 324 ----------TTNPRRLSI------------IAESIRDGLATWDNWKHVNCD-------- 353

Query: 161 GADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCF--IFLFLENYGVRKLEAVFAVLIA 218
              +  +I S  ++ +L                  F  + +F  +             I 
Sbjct: 354 --KLTTIIES--SLNVLEPAEY----------RKMFDRLSVFPPS-----------AHIP 388

Query: 219 TMALSFAWMFGDTQPSGKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSR 278
           T+ LS  W   D   S   ++V  L     S   +Q             + + S  ++ +
Sbjct: 389 TILLSLIW--FDVIKSDVMVVVNKLHKY--SLVEKQPK--------ESTISIPSIYLELK 436

Query: 279 NIDPKKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIG--LVNAG 336
                +    +  +++Y+I        +F  +  +     + FY     + IG  L N  
Sbjct: 437 VKLENEYALHRSIVDHYNIPK------TFDSDDLIPPYLDQYFY-----SHIGHHLKNIE 485

Query: 337 QYLQEKYGGGYLPILYI---WGIGLLAAGQSSTITGTYAGQFIMGGFLNL--PMKKWLRA 391
               E+       ++++   +    L       I          G  LN    +K + + 
Sbjct: 486 HP--ERMTL--FRMVFLDFRF----LEQ----KIRHDSTAWNASGSILNTLQQLKFY-KP 532

Query: 392 LITRSCAIVPTMIVALI-F-NTSEASLDILNEWLNVLQSIQIPFALIP 437
            I  +      ++ A++ F    E +L I +++ ++L+      AL+ 
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENL-ICSKYTDLLR-----IALMA 574

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		532
2jln_A		501	MHP1; hydantoin, transporter, membrane protein, nu	98.83
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	98.21
3dh4_A		530	Sodium/glucose cotransporter; membrane protein, sy	98.19
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.06
2xq2_A		593	Sodium/glucose cotransporter; transport protein, i	97.87
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	97.79

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A	Back alignment and structure

Probab=98.83  E-value=4.8e-05  Score=82.41  Aligned_cols=303  Identities=13%  Similarity=0.077  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcC
Q 009526          105 SLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQIL----SHG  180 (532)
Q Consensus       105 ~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l~i~~~la~i~~di~eviG~Aial~lL----~gg  180 (532)
                      +-++.+++++++..++-.+.++.|..+|.+-.+..|..||++...+.-++..+..++-..-+....+.+++.+    +| 
T Consensus        60 ~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g-  138 (501)
T 2jln_A           60 QVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG-  138 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            4456778888888888889999999999999999999999876554322222222222222333334444443    35 


Q ss_pred             Ccc-hHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH----hcCCChhhhhhcccccCCChhHHHHH
Q 009526          181 VLP-LWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFG----DTQPSGKELLVGVLVPRLSSKTIRQA  255 (532)
Q Consensus       181 ~ip-l~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~----~~~P~~~~v~~G~~vP~~~~~~l~~a  255 (532)
                       .+ .|++.++..+.++.+.+   +|+|.++++..+..-++.+.+++..+    ..+.+..++...  .|.-+.-.+..+
T Consensus       139 -~~~~~v~~~i~~~l~~~~~~---~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~--~~~~~~~~f~~a  212 (501)
T 2jln_A          139 -FTNLPLWIVIFGAIQVVTTF---YGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSM--GGENPGMPFSTA  212 (501)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTC--CCSSCCSCHHHH
T ss_pred             -cchHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhcc--CCccchHHHHHH
Confidence             44 67777776655544333   34455555444433333333332222    222221433321  121111123344


Q ss_pred             HHH-HcccchhHHHHHHHHHhhhhcCCCCcccchHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccC
Q 009526          256 VGV-VGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALN---YYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIG  331 (532)
Q Consensus       256 vai-iGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l~---~~~~Ds~i~l~vs~lIn~~i~~v~A~~~~~~~~~~~~~  331 (532)
                      +.+ +|..+ ++.. ..+.+  +|..+++++...+...+   ....-+.+|+.+...+..++-++.+..   .+      
T Consensus       213 i~~~~~~~~-~~~~-~~~Dy--sRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~---~~------  279 (501)
T 2jln_A          213 IMIFVGGWI-AVVV-SIHDI--VKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL---VG------  279 (501)
T ss_dssp             HHHHHTTTH-HHHT-TTHHH--HTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HS------
T ss_pred             HHHHHHHHH-HHHh-ccCcc--cccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh---cc------
Confidence            443 34321 2211 12332  23222111101111111   134445556555443322221111111   01      


Q ss_pred             chhHHHHHHHhh-cCChhHH-HHHHH-HHHHhhhchhhhh-hhhhHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHH
Q 009526          332 LVNAGQYLQEKY-GGGYLPI-LYIWG-IGLLAAGQSSTIT-GTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVAL  407 (532)
Q Consensus       332 l~~a~~~L~~~~-G~~~~~a-~~ifa-igLlaAg~sStit-~t~ag~~v~~gfl~~~~~~~~r~l~t~~iaivpal~v~~  407 (532)
                      ..+....+...+ +.   .. ..+.. +.++.+..++... +.|+...-++.+..+..+   ||..+..++++. ..++.
T Consensus       280 ~~dp~~~l~~~l~~~---~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~---~~~~~~i~~vi~-~~i~~  352 (501)
T 2jln_A          280 EWNPVIAITEVVGGV---SIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFT---FKTGVIVSAVVG-LLMMP  352 (501)
T ss_dssp             CSCHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCC---HHHHHHHHHHHH-HHTCG
T ss_pred             ccCHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccccc---hhHHHHHHHHHH-HHHHH
Confidence            123444555544 33   12 23334 4555555565564 678777777776543222   222222222221 11111


Q ss_pred             HhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009526          408 IFNTSEASLDILNEWLNVLQSIQIPFALIPLL  439 (532)
Q Consensus       408 ~~g~~~~~l~~l~~~~~vl~s~~LPfalipll  439 (532)
                       .+ .   .+.+..++..+..+.-|...+-+.
T Consensus       353 -~~-~---~~~f~~FL~~lg~~l~P~~gI~l~  379 (501)
T 2jln_A          353 -WQ-F---AGVLNTFLNLLASALGPLAGIMIS  379 (501)
T ss_dssp             -GG-T---HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             -HH-h---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12 1   346777888888888888888764

PyMOL of 2jln

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C	Back alignment and structure

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}	Back alignment and structure

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A	Back alignment and structure

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A	Back alignment and structure

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		532
d2a65a1		509	Na(+):neurotransmitter symporter homologue LeuT {A	91.19

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.19  E-value=8.3  Score=38.55  Aligned_cols=60  Identities=13%  Similarity=0.072  Sum_probs=34.8

Q ss_pred             HHHh-hcCCCchhh-----hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHh
Q 009526           82 MSIA-FLDPGNLEG-----DLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCRE  141 (532)
Q Consensus        82 ~a~a-~idpG~i~t-----~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~  141 (532)
                      .+++ .+|.||+=-     .-..|..|=.--+-.+++..+..+.+|...+|++-....+....+..
T Consensus        13 a~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~   78 (509)
T d2a65a1          13 AMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFY   78 (509)
T ss_dssp             HHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHH
T ss_pred             HHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence            3444 488888753     34445554434444455555666777777777766555555555443

PyMOL of d2a65a1