Citrus Sinensis ID: 009563

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
MNMGISTSSSDPGNGESLRSPLLSPPKQPPAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGEGVV
ccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccCCcccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHcccHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccEEEcEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccc
***********************************LLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDD********************EAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKE*****
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxHHHHHHHHHHHHHHHHHHHxxxxHxxxHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNMGISTSSSDPGNGESLRSPLLSPPKQPPAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGEGVV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Organic cation/carnitine transporter 4 High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.confidentQ9LHQ6
Organic cation transporter protein Probably transports organic cations.probableQ9VCA2
Solute carrier family 22 member 5 Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3.probableO76082

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1PW4, chain A
Confidence level:very confident
Coverage over the Query: 51-86,113-279,300-305,327-511
View the alignment between query and template
View the model in PyMOL
Template: 4GC0, chain A
Confidence level:very confident
Coverage over the Query: 50-86,113-295,307-526
View the alignment between query and template
View the model in PyMOL