Citrus Sinensis ID: 009563
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LHQ6 | 526 | Organic cation/carnitine | yes | no | 0.960 | 0.971 | 0.702 | 0.0 | |
| Q9CAT6 | 539 | Organic cation/carnitine | no | no | 0.947 | 0.935 | 0.346 | 1e-84 | |
| O64515 | 527 | Organic cation/carnitine | no | no | 0.924 | 0.933 | 0.337 | 1e-71 | |
| Q9SA38 | 518 | Organic cation/carnitine | no | no | 0.898 | 0.922 | 0.333 | 4e-70 | |
| Q9VCA2 | 548 | Organic cation transporte | yes | no | 0.896 | 0.870 | 0.334 | 1e-66 | |
| Q7ZX53 | 487 | Solute carrier family 22 | N/A | no | 0.868 | 0.948 | 0.336 | 3e-65 | |
| Q95R48 | 567 | Organic cation transporte | no | no | 0.890 | 0.835 | 0.312 | 6e-61 | |
| Q28ES4 | 487 | Solute carrier family 22 | no | no | 0.870 | 0.950 | 0.328 | 9e-61 | |
| O76082 | 557 | Solute carrier family 22 | yes | no | 0.887 | 0.847 | 0.300 | 4e-59 | |
| Q9SA36 | 521 | Organic cation/carnitine | no | no | 0.932 | 0.952 | 0.285 | 5e-57 |
| >sp|Q9LHQ6|OCT4_ARATH Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/524 (70%), Positives = 428/524 (81%), Gaps = 13/524 (2%)
Query: 8 SSSDPGNGESLRSPLLS--PPKQPPAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWA 65
S + NG +R PLL P K+ +E+L +D+ML +YCGEFG WQL+HFVLT +AWA
Sbjct: 2 ESPEDRNGNDVRQPLLEKIPVKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVLTCIAWA 61
Query: 66 LEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEE 125
LEAFHTMVMIFAD+EPE+ C+G C G C L+P SW WT G GSSTV++WGL C +
Sbjct: 62 LEAFHTMVMIFADQEPEWRCVGSDCRVGSLN-CELDPSSWEWTAGKGSSTVSEWGLICGD 120
Query: 126 KYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYV 185
KYKVGLVQALFF GCMIGAGVFGHLSDS+LGRKGSLTVVC++NA+FG TAFSPNY TYV
Sbjct: 121 KYKVGLVQALFFAGCMIGAGVFGHLSDSKLGRKGSLTVVCIINAIFGIATAFSPNYWTYV 180
Query: 186 VLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRA 245
VLR LTGFSTGGVGL AFVLATEP+GPSKRG AGMSTFYFFS GIA+LSGIAY+F++WR
Sbjct: 181 VLRFLTGFSTGGVGLTAFVLATEPIGPSKRGVAGMSTFYFFSAGIAVLSGIAYVFRSWRE 240
Query: 246 LYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLD 305
L+I SS+PS+LFLLI++PF+ ESPRWYLVRGK++EAMK+M +IAK+NGRH+P GV L LD
Sbjct: 241 LFIVSSLPSLLFLLIVIPFISESPRWYLVRGKVDEAMKLMHSIAKTNGRHIPAGVTLALD 300
Query: 306 DEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISL 365
D+ EN+ NG++N AV GS+ DVI SPL R+RL ++V I+F S+VYYG+SL
Sbjct: 301 DDVENN--NGERN--------TAVEGSLKDVILSPLMRMRLVISVAISFTVSIVYYGLSL 350
Query: 366 NVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNN 425
NV NL+TNLYLNV VNAV+EMPAF ITAVLLDK GRKP++IGT WFS FCL+G V
Sbjct: 351 NVGNLKTNLYLNVFVNAVSEMPAFAITAVLLDKYGRKPLSIGTQWFSCVFCLVGFSVWGA 410
Query: 426 GIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485
G WK VRM+ GV+GIFG+AGTYNLLFIY ELFPTVVRNAALGCATQAAQ+GAILAPFVV
Sbjct: 411 GPWKSVRMVSGVLGIFGMAGTYNLLFIYIAELFPTVVRNAALGCATQAAQMGAILAPFVV 470
Query: 486 VLGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGE 529
VLG LPF VFA CG++GG AFYLPETLNKPLYDTM GM E E
Sbjct: 471 VLGEELPFGVFAVCGLVGGGLAFYLPETLNKPLYDTMFGMHEAE 514
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High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAT6|OCT1_ARATH Organic cation/carnitine transporter 1 OS=Arabidopsis thaliana GN=OCT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 187/539 (34%), Positives = 286/539 (53%), Gaps = 35/539 (6%)
Query: 4 GISTSSSDPGNGESLRSPLLSPPKQPPAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLA 63
IS SS GE+ R +Q P + L VD+++ ++ G G Q+ H +L S+A
Sbjct: 17 NISNDSSATEKGEATRQ------QQLPNNRYALTVDEVIEQHIGALGFAQILHALLVSIA 70
Query: 64 WALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFC 123
W +A T++ IF+D +P L G ++CGL G W W G + V++W L C
Sbjct: 71 WIFDAQTTLISIFSDAQPAARLLATGAIVEGASLCGLASGEWEWIGPKSDTVVSEWNLIC 130
Query: 124 EEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYST 183
+ K+ V + LFF G + G+GV+G+L+DS GRK +L + C++ V +FSPN
Sbjct: 131 QHKFLVAVPSTLFFIGSLFGSGVYGYLADSWFGRKKTLLLSCVLTFVTAFAISFSPNVWV 190
Query: 184 YVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYI-FQT 242
Y LR GF G+G C VLATE VG RG G F+FF+ G L +AY+ ++
Sbjct: 191 YAFLRFANGFFRSGIGSCCIVLATEIVGKKWRGQVGQYGFFFFTLGFLSLPLMAYLERKS 250
Query: 243 WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVL 302
WR LY S + + + +LPF ESPRW LV+G+ EAM +++ +A+ NG+ LP + L
Sbjct: 251 WRNLYRIISFLPLGYAVCLLPFAYESPRWLLVKGRNKEAMVVLKKLARLNGKQLPADLSL 310
Query: 303 MLD-DEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYY 361
+ E+++ S+ ++ +K + A K R+ + + F VYY
Sbjct: 311 VDPIPERDDQTSSSEKFWKTKWAVK------------------RIIMVMMAGFGSGFVYY 352
Query: 362 GISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLL--- 418
GI LN NL NLYL V VNA+ E PA I + LL + R+P+ + + +GF CLL
Sbjct: 353 GIQLNAENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSNSSYLAGFACLLCAV 412
Query: 419 ---GSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQ 475
+++ + K +++ +G + Y++L++Y ELFPT VRN A+ QA
Sbjct: 413 LSIHRVIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLLRQAFM 472
Query: 476 LGAILAPFVVVLG---GWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGEGV 531
LGA AP +V LG + F VF ++ G+ + +L ET N PLY+T+A + E +
Sbjct: 473 LGASAAPLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPLYETLAQQGKAEEI 531
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High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Regulates lateral root development. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64515|OCT2_ARATH Organic cation/carnitine transporter 2 OS=Arabidopsis thaliana GN=OCT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 174/516 (33%), Positives = 263/516 (50%), Gaps = 24/516 (4%)
Query: 23 LSPPKQP----PAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFAD 78
++ P QP +DD + Y G FG Q L S + +A T + +F D
Sbjct: 1 MAEPTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTD 60
Query: 79 REPEYNCLGQG--CDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALF 136
EP ++C C +C L +W+W S +++WGL C + GL ++ F
Sbjct: 61 SEPTWHCTDSNSICHESISNICILPKTAWSWDYSPHVSVISEWGLQCAGSFVKGLPESSF 120
Query: 137 FFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTG 196
F GC+IG V L+DS LGRK L + C++ A+ LT FSPN Y VLR + GF
Sbjct: 121 FVGCLIGGLVLSTLADSSLGRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRA 180
Query: 197 GVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPS 254
+G CA VL+TE VG RG G+ +F+ F G L +AY+ + +WR LY +SIP+
Sbjct: 181 TIGTCALVLSTELVGKKWRGRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAWTSIPT 240
Query: 255 ILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASN 314
I++ +++ F+ ESPRW VRG+ EA+ I++ +A + G + + + +S
Sbjct: 241 IIYCVLVRFFVCESPRWLFVRGRREEAISILKRVASIPSTDVSSGGAISM-----SFSSL 295
Query: 315 GKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNL 374
+ +E+ +T + ++ +++ RL + I F +VYYG+ L + NL N+
Sbjct: 296 PFEEDEEKPSTNVNIFTTMKVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNI 355
Query: 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSG-----FFCLLGSLVKNNGIWK 429
YL+ NA+ ++PA IT L+DKL R+ IG G F L + N+G
Sbjct: 356 YLSAAFNALMDLPANLITLFLVDKLSRRNALIGFTALGGVSSVLIFALHNMRIGNHG--- 412
Query: 430 IVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGG 489
+++ ++ F +N+ IYT ELFPT VRN+A+ A QA LG + +P +V G
Sbjct: 413 ALQLALELISYFSACSAFNMEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGR 472
Query: 490 WLPFAVFAACGI-IG--GLFAFYLPETLNKPLYDTM 522
F F G+ IG GLFA LPET L DTM
Sbjct: 473 KNAFWSFGLFGLAIGLLGLFAVGLPETRGSDLCDTM 508
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High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SA38|OCT3_ARATH Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 170/510 (33%), Positives = 256/510 (50%), Gaps = 32/510 (6%)
Query: 24 SPPKQPPAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEY 83
S PP +++ + + G+FG Q L S AW +A T + +F D +P +
Sbjct: 15 SESNLPPPRS----LEETIERCIGDFGWAQFLQAALVSFAWFFDAQQTFITVFTDSQPMW 70
Query: 84 NC-----LGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFF 138
+C + C+ +C L +W+W S +++WGL C + G + FF
Sbjct: 71 HCDNSDRVDSVCNTSSSNLCTLPNQTWSWDLNPHVSIISEWGLQCAGSFLKGFPASSFFL 130
Query: 139 GCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGV 198
GC+IG L+DS LGRK L + C++ ++ LTAFS + Y LR L G +
Sbjct: 131 GCLIGGLALSTLADSSLGRKNMLLLSCLIMSLSSMLTAFSTSIWVYAFLRFLNGCGRATI 190
Query: 199 GLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSIL 256
G CA VL+TE VG RG G F+ F+ G L + YI + +WR LY+ +SIP+++
Sbjct: 191 GTCALVLSTELVGKKWRGQVGAMGFFCFTLGFLSLPMLGYINEGNSWRNLYVWTSIPTLI 250
Query: 257 FLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGK 316
+ ++ F+ ESPRW +V+G+ EA+ I+++IA SN + L E END S
Sbjct: 251 YCCLVRSFVRESPRWLIVKGRKEEAVSILQSIA-SNAITMS---FTNLCFEVENDQSKSN 306
Query: 317 QNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYL 376
+ + L +++ + RL A+ + F +VYYG+ L + NL NLYL
Sbjct: 307 PDVYDALKI----------LVRKSWSFRRLLAAMVVGFGIGMVYYGMPLALTNLNFNLYL 356
Query: 377 NVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGF-FCLLGSLVKNNGIWKIVRMIC 435
V+ NA++E PAF IT +DK+ R+ IG SG L+ L + G +IV +
Sbjct: 357 GVVFNALSEFPAFLITFFFIDKINRRDALIGFTALSGISSALIAVLGQQLGSLQIVLEL- 415
Query: 436 GVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFAV 495
+ F +N+ IYT E+FPT VRN+A+ QA G + +P +V G F
Sbjct: 416 --VSFFSACTAFNMTLIYTIEMFPTCVRNSAISMVRQALVFGGVFSPVMVAAGRENQFWS 473
Query: 496 FAACGII---GGLFAFYLPETLNKPLYDTM 522
+ G+I GLF F LPET L DTM
Sbjct: 474 YGLFGLIIGLCGLFVFGLPETRGSVLCDTM 503
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High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9VCA2|ORCT_DROME Organic cation transporter protein OS=Drosophila melanogaster GN=Orct PE=1 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 178/532 (33%), Positives = 273/532 (51%), Gaps = 55/532 (10%)
Query: 39 DDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCL------------ 86
DD++ + GEFGP+Q R + L L + AFH + +F +P++ C
Sbjct: 4 DDVI-THLGEFGPYQKRIYYLLCLPAIVCAFHKLAGVFLLAKPDFRCALPYENGSIYELS 62
Query: 87 ----------GQGC-----DPGEKTVCGLEPGSWAWTGGDGS----------STVTQWGL 121
+ C D E+ + G P S T S S VT+W L
Sbjct: 63 PHLWNLSYPENERCSYYDVDYTEEYLNGSIPRSSNETKTCSSYVYDRSKYLNSAVTEWNL 122
Query: 122 FCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNY 181
C +LF G ++G+ +FG +SD +LGRK + ++ +FG L A +P Y
Sbjct: 123 VCSRSLLSATSDSLFMLGVLLGSLIFGQMSD-KLGRKPTFFASLVLQLIFGVLAAVAPEY 181
Query: 182 STYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241
+Y + RM+ G +T GV L A+V+A E VG S R AG++ FFS G L +G AY
Sbjct: 182 FSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYFIH 241
Query: 242 TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVV 301
WR L IA ++P +LFL +PES RW L++G+ +EA I+ AK N +P+ +
Sbjct: 242 DWRWLQIAITLPGLLFLCYYW-IIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEIY 300
Query: 302 LMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYY 361
L DE A KQ+ E A++ A T V D+++ P R + L F+ S VYY
Sbjct: 301 EQLVDEV---AEKKKQD--EMAASQPAAT--VFDLLRYPNLRRKTLLIFFDWFVNSGVYY 353
Query: 362 GISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSL 421
G+S N NL N +N +++ E+P +T+ L++ GR+ + GT+ +G L
Sbjct: 354 GLSWNTNNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVAGISLLATIF 413
Query: 422 VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILA 481
V ++ W IV C ++G + +Y ++I++ E FPTVVRN LG ++ A++G ILA
Sbjct: 414 VPSDMNWLIVA--CAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGILA 471
Query: 482 PFVVVLGG-W--LPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGEG 530
P++ +LG W LP + A + GL + LPETLNKP+ +T +++GE
Sbjct: 472 PYLKLLGEIWRPLPLIICGALSLTAGLLSLLLPETLNKPMPET---IEDGEN 520
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Probably transports organic cations. Drosophila melanogaster (taxid: 7227) |
| >sp|Q7ZX53|S22FL_XENLA Solute carrier family 22 member 15-like OS=Xenopus laevis GN=slc22a15b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 245/494 (49%), Gaps = 32/494 (6%)
Query: 40 DMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPG-EKTVC 98
D Y GEFG Q R +L A +M+++ PEY + E +
Sbjct: 4 DEAFLYVGEFGWCQKRLTGFLTLLQIYVACQSMLIVLVGAVPEYLIDNEDISTSKEDYIK 63
Query: 99 GLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRK 158
L + + +S V++W L E YKV L +LFF G +IG FG LSD +LGR+
Sbjct: 64 HLHDAN------NFTSIVSEWHLIKHEAYKVNLASSLFFAGLLIGNVFFGPLSD-KLGRR 116
Query: 159 GSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAA 218
+ +FG TA +P+Y + V R G GG+ L +FVL E VG S
Sbjct: 117 PVYLSGLFFDIIFGYFTALAPSYEVFAVSRFFVGVMNGGMALVSFVLTQEYVGKSYWALT 176
Query: 219 GMSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKL 278
G T F+ GIA + + + + WR L ++ P I FLL+ LPESPRW RG
Sbjct: 177 GSLTNLIFAVGIAFYALLGFYIRNWRTLAFVANSPGIFFLLLSF-VLPESPRWLYSRGYT 235
Query: 279 NEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIK 338
EA ++ ++A NG P V+ L A++ SV D++K
Sbjct: 236 AEAEAVLESMAAGNGVERP---VVRLKSCPGTTANSAH---------------SVFDLVK 277
Query: 339 SPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDK 398
+ R R L + I ++CS+VYYG++LN L+ NLYLNV + + E+PAF + ++K
Sbjct: 278 YGVLRWRTILLMYIWYVCSLVYYGLTLNAGELKGNLYLNVALYGLVEVPAFPLCLYFIEK 337
Query: 399 L--GRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTE 456
GR+ T G L F+GF C+ V I + + G V+ +N+++IYT+E
Sbjct: 338 SWSGRRRATAGFLVFAGFACIFTIFVPETNGDFINPTVLALFGKLSVSAAFNVVYIYTSE 397
Query: 457 LFPTVVRNAALGCATQAAQLGAILAPFVVVLGGW---LPFAVFAACGIIGGLFAFYLPET 513
L+PTVVRNA LG A + G IL+PF+ + + +PF F GI G+ + LPET
Sbjct: 398 LYPTVVRNAGLGVCAMACRFGGILSPFIPAMKSFNPSMPFVAFGISGISAGILSLLLPET 457
Query: 514 LNKPLYDTMAGMKE 527
NKP+ +T+ ++
Sbjct: 458 RNKPIAETIEDLQS 471
|
Probably transports organic cations. Xenopus laevis (taxid: 8355) |
| >sp|Q95R48|OCTL_DROME Organic cation transporter-like protein OS=Drosophila melanogaster GN=Orct2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 235 bits (600), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 162/519 (31%), Positives = 255/519 (49%), Gaps = 45/519 (8%)
Query: 45 YCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCL------------------ 86
+ G+FG +Q + L L AFH + +F +P++ C
Sbjct: 9 HLGDFGRYQKIIYFLICLTSIPVAFHKLAGVFLLAKPDFRCALPFENGSSYDLPTHLWNL 68
Query: 87 ----GQGC-----DPGEKTVCGLEPGSWAWTGGDGS----------STVTQWGLFCEEKY 127
+ C D E+ + G P S T S S VT+W L C +
Sbjct: 69 SYPENERCSYYDVDYTEEYLNGSIPRSSNETKTCSSYVYDRSKYLNSAVTEWNLVCGRDF 128
Query: 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVL 187
+LF G ++G+ VFG LSD + GRK L ++ +FG L +P Y TY
Sbjct: 129 MAATSDSLFMLGVLLGSIVFGQLSD-KYGRKPILFASLVIQVLFGVLAGVAPEYFTYTFA 187
Query: 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALY 247
R++ G +T GV L A+V+A E VGP KR AG+ FFS G L + AY WR L
Sbjct: 188 RLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGIFVMMFFSVGFMLTAVFAYFVHDWRWLQ 247
Query: 248 IASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDE 307
IA ++P ++F+ +PES RW L++G+ + A+ M+ A+ N + D + L DE
Sbjct: 248 IALTLPGLIFMFYYW-IIPESARWLLLKGRKDCAIANMQKAARFNKVEISDEALSELLDE 306
Query: 308 QENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNV 367
EN KQ +++ E SV D+ P R + L + S VYYG+S N
Sbjct: 307 GENSEEKAKQKLEDQ-ELDEGPPPSVWDLFCYPNLRRKTLLIFLDWLVTSGVYYGLSWNT 365
Query: 368 VNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGI 427
NL N+ LN +++ E+PA+ + L++ GR+ + G L +G LL +++ +
Sbjct: 366 SNLGGNVLLNFVISGAVEIPAYIFLLLTLNRWGRRSILCGCLVMAG-LSLLATVIIPQRM 424
Query: 428 WKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVL 487
++ + C ++G + +Y ++I++ E FPTVVRN ALG A+ A++ ++APF+ L
Sbjct: 425 HTLI-VACAMLGKLAITASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMMAPFLNFL 483
Query: 488 GG-W--LPFAVFAACGIIGGLFAFYLPETLNKPLYDTMA 523
W LP + + ++ GL + LPET NKP+ +T+A
Sbjct: 484 ATIWKPLPLLICGSLTLVAGLLSLLLPETHNKPMLETIA 522
|
Probably transports organic cations. Drosophila melanogaster (taxid: 7227) |
| >sp|Q28ES4|S22FL_XENTR Solute carrier family 22 member 15-like OS=Xenopus tropicalis GN=slc22a15b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 162/493 (32%), Positives = 241/493 (48%), Gaps = 30/493 (6%)
Query: 40 DMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCG 99
D Y GEFG Q R +L A +M+++ PEY D + +
Sbjct: 4 DEAFLYIGEFGCCQKRLTAFLTLLQVYVACQSMLIVLVGAVPEYLI-----DNEDISASK 58
Query: 100 LEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKG 159
E + +S V++W L E YKV L +LFF G +IG +FG LSD +LGR+
Sbjct: 59 EEYTKHLHDTNNFTSIVSEWHLIKNEAYKVNLASSLFFAGLLIGNILFGPLSD-KLGRRP 117
Query: 160 SLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAG 219
+ FG TA +P+Y + V R G GG+ L +FVL E VG S G
Sbjct: 118 VYLSGLFFDITFGYCTALAPSYEVFAVSRFFVGIMNGGMALVSFVLTQEYVGKSYWALTG 177
Query: 220 MSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLN 279
T F+ GIA + + + + WR L ++ P I F L+ LPESPRW G
Sbjct: 178 SLTNLIFAVGIAFYALLGFYIRNWRTLAFVANSPGIFFFLLSF-LLPESPRWLYSHGYTT 236
Query: 280 EAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKS 339
EA +++++A NG P VV + K T SV D++K
Sbjct: 237 EAEGVLQSMAVGNGVERP--VVKL----------------KSCPGTSSKSAHSVFDLVKY 278
Query: 340 PLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDK- 398
+ R R L + I ++CS+VYYG++LN L+ NLYLNV + + E+PAF + ++K
Sbjct: 279 GVLRWRTILLMYIWYVCSLVYYGLTLNAGELKGNLYLNVALYGLVEVPAFPLCLYFIEKS 338
Query: 399 -LGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTEL 457
GR+ T G L F+GF C+ + + + + G V+ +N+++IYT+EL
Sbjct: 339 WSGRRKATAGFLGFAGFACIFTIFLPETNGDLLNPTVLALFGKLSVSAAFNVVYIYTSEL 398
Query: 458 FPTVVRNAALGCATQAAQLGAILAPFVVVLGGW---LPFAVFAACGIIGGLFAFYLPETL 514
+PTVVRNA LG A + G IL+PF+ + +PF F GI G+ + LPET
Sbjct: 399 YPTVVRNAGLGVCAMACRFGGILSPFIPTMKSLNPSMPFVAFGISGISAGILSLLLPETR 458
Query: 515 NKPLYDTMAGMKE 527
NKP+ +++ ++
Sbjct: 459 NKPIAESIEDLQS 471
|
Probably transports organic cations. Xenopus tropicalis (taxid: 8364) |
| >sp|O76082|S22A5_HUMAN Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 164/546 (30%), Positives = 268/546 (49%), Gaps = 74/546 (13%)
Query: 40 DMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNC-------------- 85
D + + GE+GP+Q F L S + F + +F PE+ C
Sbjct: 5 DEVTAFLGEWGPFQRLIFFLLSASIIPNGFTGLSSVFLIATPEHRCRVPDAANLSSAWRN 64
Query: 86 ------LGQGCDPGEK------------TVCGLEPGSWAWTGG-------DG-------- 112
L G + + GLEPG G DG
Sbjct: 65 HTVPLRLRDGREVPHSCRRYRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFSQDVY 124
Query: 113 -SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVF 171
S+ VT+W L CE+ +K L +LFF G ++G+ + G LSD R GRK L V M F
Sbjct: 125 LSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSFISGQLSD-RFGRKNVLFVTMGMQTGF 183
Query: 172 GCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKR---GAAGMSTFYFFST 228
L FS N+ +VVL +L G + AFVL TE +G S R G+ FY F
Sbjct: 184 SFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLGTEILGKSVRIIFSTLGVCIFYAF-- 241
Query: 229 GIALLSGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAI 288
G +L AY + WR L +A ++P +L + + F+PESPRW + +G+ EA I+R
Sbjct: 242 GYMVLPLFAYFIRDWRMLLVALTMPGVL-CVALWWFIPESPRWLISQGRFEEAEVIIRKA 300
Query: 289 AKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFL 348
AK+NG +P + D + D S+ KQ + +++D++++ R+ +
Sbjct: 301 AKANGIVVPSTI---FDPSELQDLSSKKQQ-----------SHNILDLLRTWNIRMVTIM 346
Query: 349 AVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGT 408
++ + SV Y+G+SL+ NL ++++N ++A+ E+PA+ + +LL L R+
Sbjct: 347 SIMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAWLLLQYLPRRYSMATA 406
Query: 409 LWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALG 468
L+ G L LV + + ++ ++G FGV ++++++YT EL+PTVVRN +G
Sbjct: 407 LFLGGSVLLFMQLVPPDLYYLATVLV--MVGKFGVTAAFSMVYVYTAELYPTVVRNMGVG 464
Query: 469 CATQAAQLGAILAPFVVVLGGW---LPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGM 525
++ A++LG+IL+P+ V LG + LP+ + + I+ + +LPE+ PL DT+ M
Sbjct: 465 VSSTASRLGSILSPYFVYLGAYDRFLPYILMGSLTILTAILTLFLPESFGTPLPDTIDQM 524
Query: 526 KEGEGV 531
+G+
Sbjct: 525 LRVKGM 530
|
Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3. Homo sapiens (taxid: 9606) |
| >sp|Q9SA36|OCT6_ARATH Organic cation/carnitine transporter 6 OS=Arabidopsis thaliana GN=OCT6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 153/536 (28%), Positives = 249/536 (46%), Gaps = 40/536 (7%)
Query: 15 GESLRSPLLSPPKQPPAEQEK-----LLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAF 69
+ + PLLS EK L D ++ + +FG WQ L LA +A
Sbjct: 2 ADPISEPLLSHLTDDSGVNEKTRLEALTFDKIVEQSLSDFGFWQFFQISLVGLALLFDAQ 61
Query: 70 HTMVMIFADREPEYNCLGQG-CDPGEKTVCGLEPGSWAWTGG-DGSSTVTQWGLFCEEKY 127
+ ++ D P ++CL CDP +C L +W W GG G S ++++GL C
Sbjct: 62 QIFITVYTDAYPTWHCLNHTICDPSASDICKLPRSAWEWDGGSQGKSVISEFGLECSSSL 121
Query: 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVL 187
G+ + F+ G ++G + D LGRK + ++ FS N Y L
Sbjct: 122 LRGMPSSAFYIGAIVGGFFLALIPDDSLGRKKLVLFSTFAMSITSISVIFSTNVWIYTFL 181
Query: 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRA 245
+ + GFS A VL +E V R A M F F G LSGIA++ Q +WR
Sbjct: 182 KFIIGFSRSQTWSYALVLISERVSTRWRPRATMIPFTLFVLGFMSLSGIAFLAQDSSWRY 241
Query: 246 LYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLD 305
LY+ +S+P++ + + + F ESPRW ++GK EA+ ++ ++ +L + VV L
Sbjct: 242 LYLYTSVPAVFYCIFLYLFALESPRWLHMQGKDKEAIDVLTKMSPKEKAYL-ESVVSKLP 300
Query: 306 DEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISL 365
+QEN ++A T S+ D R+ + + I F + YYG+ L
Sbjct: 301 LKQEN--------------FEQAPTYSIKDFFFRKWAFRRILVVMIIMFGLGISYYGVPL 346
Query: 366 NVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRK-PMTIGTLW--FSGFFCLLGSLV 422
++ N+YL+ +NA+ E+P F IT +LL++ R+ + + TL SG C + S++
Sbjct: 347 AARDIDVNIYLSETLNALVELPTFVITPILLERFNRRSSVLVNTLLGGASGVLCFVLSIL 406
Query: 423 KNNGI---WKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAI 479
I +++ C +G +NL+ ++ E+FPT VR++A QA +G
Sbjct: 407 GKTEIAFAFELGTFFCARIG-------FNLMAVFMVEMFPTCVRSSATMMFRQALVVGGA 459
Query: 480 LAPFVVVLGGWLPFAVFAACGIIG---GLFAFYLPETLNKPLYDTMAGMKEGEGVV 532
P + +G ++P FA GI G+F LPET L D+M ++ + V
Sbjct: 460 CCPLIASIGRYIPSVSFAIFGIAMSGLGMFVLILPETKGLSLCDSMEEQEKRDQAV 515
|
High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| 224117372 | 533 | predicted protein [Populus trichocarpa] | 0.971 | 0.969 | 0.768 | 0.0 | |
| 225461181 | 529 | PREDICTED: organic cation transporter pr | 0.964 | 0.969 | 0.768 | 0.0 | |
| 255580174 | 527 | Organic cation transporter, putative [Ri | 0.969 | 0.979 | 0.740 | 0.0 | |
| 302143179 | 494 | unnamed protein product [Vitis vinifera] | 0.917 | 0.987 | 0.785 | 0.0 | |
| 357452551 | 527 | Solute carrier family 22 member 15-like | 0.962 | 0.971 | 0.707 | 0.0 | |
| 356549805 | 528 | PREDICTED: organic cation transporter pr | 0.960 | 0.967 | 0.712 | 0.0 | |
| 356549803 | 516 | PREDICTED: organic cation transporter pr | 0.941 | 0.970 | 0.713 | 0.0 | |
| 356543968 | 533 | PREDICTED: organic cation transporter pr | 0.926 | 0.924 | 0.719 | 0.0 | |
| 356545185 | 885 | PREDICTED: solute carrier family 22 memb | 0.966 | 0.580 | 0.709 | 0.0 | |
| 356543970 | 516 | PREDICTED: organic cation transporter pr | 0.911 | 0.939 | 0.728 | 0.0 |
| >gi|224117372|ref|XP_002317556.1| predicted protein [Populus trichocarpa] gi|222860621|gb|EEE98168.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/528 (76%), Positives = 458/528 (86%), Gaps = 11/528 (2%)
Query: 9 SSDPGNGESLRSPLLSPPKQPPAEQEK------LLVDDMLHKYCGEFGPWQLRHFVLTSL 62
SSDP LRSPLLS ++P + EK L +DDML K+CGEFG WQLRHFVLT L
Sbjct: 6 SSDP----DLRSPLLSSLEEPARKPEKGPDVQKLTIDDMLQKHCGEFGTWQLRHFVLTCL 61
Query: 63 AWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLF 122
AWALE FHTMVMIFADREPE+ CLG GCD K+VCG EPGSW W GG GSSTV QWGL
Sbjct: 62 AWALEGFHTMVMIFADREPEFRCLGSGCDEMAKSVCGFEPGSWDWVGGAGSSTVAQWGLV 121
Query: 123 CEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYS 182
C EKYKVGLVQA+FF GCMIGAG FGHLSDS LGRKGSLTVVC++NAVFGCLTA +P+Y
Sbjct: 122 CGEKYKVGLVQAVFFGGCMIGAGTFGHLSDSTLGRKGSLTVVCLLNAVFGCLTALAPDYW 181
Query: 183 TYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQT 242
TY++LR+LTGFSTGGVGLCAFVLATEPVG SKRGAAGMSTFYFFSTGIA+LSGIAYIF +
Sbjct: 182 TYLLLRLLTGFSTGGVGLCAFVLATEPVGSSKRGAAGMSTFYFFSTGIAMLSGIAYIFPS 241
Query: 243 WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVL 302
WR LYIASSIPSILFL+I+LPF+ ESPRWYLVRG++NEAM +MR IAKSNG+HLPDGVVL
Sbjct: 242 WRELYIASSIPSILFLVIVLPFISESPRWYLVRGRINEAMTLMRTIAKSNGKHLPDGVVL 301
Query: 303 MLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYG 362
L DE N++ Q+ K+ ATKEA+TGSVIDVI+SP+TR+RLFLAV INF+CSVVYYG
Sbjct: 302 AL-DEDVNESYVNDQSDKQGFATKEAITGSVIDVIRSPVTRVRLFLAVAINFMCSVVYYG 360
Query: 363 ISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV 422
+SLNVVNL TNL+LNV++NAVAEMPAFTITA+LLDK GRKP+TIGTLWFSGFFC G L+
Sbjct: 361 LSLNVVNLDTNLHLNVVLNAVAEMPAFTITALLLDKFGRKPLTIGTLWFSGFFCFAGCLM 420
Query: 423 KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAP 482
GIWK+VRMICG++GIFG+AGTYNLLFIYT ELFPTVVRN ALGCATQ+AQ+GAILAP
Sbjct: 421 GGVGIWKVVRMICGILGIFGMAGTYNLLFIYTAELFPTVVRNVALGCATQSAQMGAILAP 480
Query: 483 FVVVLGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGEG 530
F+VV+GG LPFAVFA+CG +GGL AFYLPETLN+PLYDT+ GMKEGEG
Sbjct: 481 FIVVMGGALPFAVFASCGFVGGLLAFYLPETLNRPLYDTITGMKEGEG 528
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461181|ref|XP_002280309.1| PREDICTED: organic cation transporter protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/515 (76%), Positives = 458/515 (88%), Gaps = 2/515 (0%)
Query: 16 ESLRSPLLSPPKQPPAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMI 75
+ L SPLL K E +KL +DDML ++CGEFG WQLRHFVLTSLAWALEAFHTMVMI
Sbjct: 11 QDLASPLLRAVKTRGGEPQKLCIDDMLQRHCGEFGVWQLRHFVLTSLAWALEAFHTMVMI 70
Query: 76 FADREPEYNCLG-QGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQA 134
FAD+EP + C+ +GC +VCGL+PGSW W+GG GSST +WGL CE KYKVGLVQA
Sbjct: 71 FADQEPAWTCVSSRGCSVASTSVCGLDPGSWEWSGGPGSSTAAEWGLVCENKYKVGLVQA 130
Query: 135 LFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 194
LFF GCMIGAGVFGHLSDS LGRKGSLTVVC++NAVFGCLTA SP + Y +LR+LTGFS
Sbjct: 131 LFFGGCMIGAGVFGHLSDSFLGRKGSLTVVCILNAVFGCLTALSPGFWAYALLRLLTGFS 190
Query: 195 TGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPS 254
TGGVGLCAFVLATEPVGP+KRG AGMSTFYFFSTGIALLSGIAYIF +WR+LYIASS+PS
Sbjct: 191 TGGVGLCAFVLATEPVGPTKRGVAGMSTFYFFSTGIALLSGIAYIFPSWRSLYIASSLPS 250
Query: 255 ILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASN 314
+LF+++++PFL ESPRWYLVRGK+NEAM++MR IAKSNG+HLPDGVVL LD+E N+ S
Sbjct: 251 VLFVILVIPFLSESPRWYLVRGKINEAMEVMRVIAKSNGKHLPDGVVLGLDEET-NENST 309
Query: 315 GKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNL 374
++YKEEL+TK+A++GS+IDVI+SP+TR RLFLAV INFLCSVVYYG+SLNVVNL+TNL
Sbjct: 310 DTESYKEELSTKQAISGSLIDVIRSPITRFRLFLAVVINFLCSVVYYGLSLNVVNLETNL 369
Query: 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMI 434
YL+VL+NAVAEMPA+T+TAVLLD+ GRKP+ IGTLWFSGFFCLLG+LVK+NGIWK+VRM+
Sbjct: 370 YLSVLLNAVAEMPAYTLTAVLLDRFGRKPLAIGTLWFSGFFCLLGTLVKSNGIWKVVRMV 429
Query: 435 CGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFA 494
CGV+GIFG+AGTYNLLFIYTTELFPTVVRNAALGCATQAAQ+GAILAPFVVVLG LPFA
Sbjct: 430 CGVLGIFGMAGTYNLLFIYTTELFPTVVRNAALGCATQAAQMGAILAPFVVVLGKVLPFA 489
Query: 495 VFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGE 529
VF ACGI GG+ AFYLPETLN+PLYDTM GM++ E
Sbjct: 490 VFGACGISGGILAFYLPETLNQPLYDTMTGMEDAE 524
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580174|ref|XP_002530918.1| Organic cation transporter, putative [Ricinus communis] gi|223529512|gb|EEF31467.1| Organic cation transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/525 (74%), Positives = 454/525 (86%), Gaps = 9/525 (1%)
Query: 9 SSDPGNGESLRSPLLSPPKQPP----AEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAW 64
+SDP L SPLL P + PP +E EKL +DDML K+CGEFG WQLRHF+LT LAW
Sbjct: 2 ASDP----DLHSPLLQPSQSPPPLKESEPEKLTIDDMLQKHCGEFGSWQLRHFILTCLAW 57
Query: 65 ALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCE 124
ALEAFHTMV+IFADR+PE+ CL GC K+VCG EPGSW W GG GSSTV QWGL C
Sbjct: 58 ALEAFHTMVVIFADRQPEFRCLAPGCQVTAKSVCGFEPGSWEWVGGLGSSTVAQWGLVCG 117
Query: 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTY 184
+K+KVGLVQ++FF GCMIGAG+FGHLSDS LGRKGSLTVVC++NA+FGCLTA +P+Y TY
Sbjct: 118 QKFKVGLVQSIFFGGCMIGAGIFGHLSDSILGRKGSLTVVCILNALFGCLTALAPDYWTY 177
Query: 185 VVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWR 244
++LR+LTGFSTGGVGLCAFVLATEPVGP+KRG AGMSTFYFFS+GIA+LSGIAY F++WR
Sbjct: 178 LLLRLLTGFSTGGVGLCAFVLATEPVGPTKRGTAGMSTFYFFSSGIAMLSGIAYYFRSWR 237
Query: 245 ALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLML 304
ALYIASS+PSILFL+++LPF+ ESPRWYLVRG++NEAMK+M IAKSNG HLPDGV+L L
Sbjct: 238 ALYIASSVPSILFLVLVLPFISESPRWYLVRGRINEAMKLMSTIAKSNGNHLPDGVILAL 297
Query: 305 DDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGIS 364
D+E N +G Q+ KE++A KEA+ GS+IDVI+SP+TR+RLFL V I+FLCSVVYYG+S
Sbjct: 298 DEEVNNGTRDG-QSCKEKIAKKEAIAGSLIDVIQSPVTRVRLFLTVAISFLCSVVYYGLS 356
Query: 365 LNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKN 424
LNVVNL TNLYL VL+NAVAEMPAFTITA+LL+K GRKP+ +GT WFSG FCL GSL+ +
Sbjct: 357 LNVVNLDTNLYLTVLLNAVAEMPAFTITAILLNKFGRKPLAVGTQWFSGLFCLTGSLMGS 416
Query: 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFV 484
GIWK+ RMICG++GIFG+AGTYNLLFIYT ELFPTVVRNAALGCATQAAQ+GAILAP V
Sbjct: 417 VGIWKVTRMICGLLGIFGMAGTYNLLFIYTAELFPTVVRNAALGCATQAAQMGAILAPLV 476
Query: 485 VVLGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGE 529
VVLGG LPFAVFA CGI+GG AFYLPETLN+PLYDTM GM++GE
Sbjct: 477 VVLGGGLPFAVFAVCGIMGGFLAFYLPETLNRPLYDTMTGMEDGE 521
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143179|emb|CBI20474.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/490 (78%), Positives = 444/490 (90%), Gaps = 2/490 (0%)
Query: 41 MLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLG-QGCDPGEKTVCG 99
ML ++CGEFG WQLRHFVLTSLAWALEAFHTMVMIFAD+EP + C+ +GC +VCG
Sbjct: 1 MLQRHCGEFGVWQLRHFVLTSLAWALEAFHTMVMIFADQEPAWTCVSSRGCSVASTSVCG 60
Query: 100 LEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKG 159
L+PGSW W+GG GSST +WGL CE KYKVGLVQALFF GCMIGAGVFGHLSDS LGRKG
Sbjct: 61 LDPGSWEWSGGPGSSTAAEWGLVCENKYKVGLVQALFFGGCMIGAGVFGHLSDSFLGRKG 120
Query: 160 SLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAG 219
SLTVVC++NAVFGCLTA SP + Y +LR+LTGFSTGGVGLCAFVLATEPVGP+KRG AG
Sbjct: 121 SLTVVCILNAVFGCLTALSPGFWAYALLRLLTGFSTGGVGLCAFVLATEPVGPTKRGVAG 180
Query: 220 MSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLN 279
MSTFYFFSTGIALLSGIAYIF +WR+LYIASS+PS+LF+++++PFL ESPRWYLVRGK+N
Sbjct: 181 MSTFYFFSTGIALLSGIAYIFPSWRSLYIASSLPSVLFVILVIPFLSESPRWYLVRGKIN 240
Query: 280 EAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKS 339
EAM++MR IAKSNG+HLPDGVVL LD+E N+ S ++YKEEL+TK+A++GS+IDVI+S
Sbjct: 241 EAMEVMRVIAKSNGKHLPDGVVLGLDEET-NENSTDTESYKEELSTKQAISGSLIDVIRS 299
Query: 340 PLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKL 399
P+TR RLFLAV INFLCSVVYYG+SLNVVNL+TNLYL+VL+NAVAEMPA+T+TAVLLD+
Sbjct: 300 PITRFRLFLAVVINFLCSVVYYGLSLNVVNLETNLYLSVLLNAVAEMPAYTLTAVLLDRF 359
Query: 400 GRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFP 459
GRKP+ IGTLWFSGFFCLLG+LVK+NGIWK+VRM+CGV+GIFG+AGTYNLLFIYTTELFP
Sbjct: 360 GRKPLAIGTLWFSGFFCLLGTLVKSNGIWKVVRMVCGVLGIFGMAGTYNLLFIYTTELFP 419
Query: 460 TVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFAVFAACGIIGGLFAFYLPETLNKPLY 519
TVVRNAALGCATQAAQ+GAILAPFVVVLG LPFAVF ACGI GG+ AFYLPETLN+PLY
Sbjct: 420 TVVRNAALGCATQAAQMGAILAPFVVVLGKVLPFAVFGACGISGGILAFYLPETLNQPLY 479
Query: 520 DTMAGMKEGE 529
DTM GM++ E
Sbjct: 480 DTMTGMEDAE 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357452551|ref|XP_003596552.1| Solute carrier family 22 member 15-like protein [Medicago truncatula] gi|124361091|gb|ABN09063.1| Major facilitator superfamily [Medicago truncatula] gi|355485600|gb|AES66803.1| Solute carrier family 22 member 15-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/517 (70%), Positives = 434/517 (83%), Gaps = 5/517 (0%)
Query: 16 ESLRSPLLSPPKQPPAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMI 75
E L SP+L P + E EK+ +D+ML KYCGEFG WQL+HF+LTSLAWALEAFHTMVMI
Sbjct: 10 EDLNSPILPPSSKTSNETEKICIDEMLEKYCGEFGKWQLKHFILTSLAWALEAFHTMVMI 69
Query: 76 FADREPEYNCL-GQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQA 134
FADREP++ C+ G C +VC + SW W G+G+STV++W L C +K+K+GLVQA
Sbjct: 70 FADREPDWKCVEGMECS-ANGSVCDMASSSWQWVAGEGASTVSEWSLICGDKFKIGLVQA 128
Query: 135 LFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 194
LFF GCMIGAGVFGHLSDS LGRKGSL VVC +N +FGCLTAFSPNY YV+LR+LTGFS
Sbjct: 129 LFFAGCMIGAGVFGHLSDSSLGRKGSLIVVCALNTIFGCLTAFSPNYWIYVLLRLLTGFS 188
Query: 195 TGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPS 254
TGGVGLCAFVLATEP+GPSKRG AGMSTFYFFS+GIA+LSGIAY FQTWR LYI SSIPS
Sbjct: 189 TGGVGLCAFVLATEPIGPSKRGMAGMSTFYFFSSGIAILSGIAYTFQTWRTLYIVSSIPS 248
Query: 255 ILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQEN---D 311
IL+++++LPF+ ESPRWYLVRG++NEA +M IA NG+HLPDGVVL LD+E N
Sbjct: 249 ILYIILVLPFISESPRWYLVRGRINEATTLMSTIASFNGKHLPDGVVLALDEEVSNSKKS 308
Query: 312 ASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQ 371
S+ + N + K+A GS+IDVI+ P+TRIRLFLA+ +NFL SVVYYG+SLNV NL+
Sbjct: 309 TSDLEYNLISYVENKDAQVGSIIDVIRYPVTRIRLFLAIALNFLASVVYYGLSLNVTNLE 368
Query: 372 TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIV 431
TNLY+NVL+NAVAEMPAFTITAVLLD+ GRKP+TIGT+WFSGFFCLLGS + N G+WK++
Sbjct: 369 TNLYMNVLLNAVAEMPAFTITAVLLDRFGRKPLTIGTMWFSGFFCLLGSFMGNVGVWKVI 428
Query: 432 RMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWL 491
+++CGV+GIFG+AGTYNLLFIYT+ELFPTVVRNAALG ATQAAQ+GAILAPFVVVLG WL
Sbjct: 429 KLVCGVLGIFGMAGTYNLLFIYTSELFPTVVRNAALGSATQAAQMGAILAPFVVVLGSWL 488
Query: 492 PFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEG 528
PF VFA CGI+GG+FAFYLPETLN PLYDT G++ G
Sbjct: 489 PFGVFAVCGILGGMFAFYLPETLNMPLYDTFNGLEAG 525
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549805|ref|XP_003543281.1| PREDICTED: organic cation transporter protein-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/518 (71%), Positives = 439/518 (84%), Gaps = 7/518 (1%)
Query: 16 ESLRSPLLSPPKQPPAE--QEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMV 73
LRSP+L + EKL +DDML K+CGEFG WQL+HF+LTSLAWALEAFHTMV
Sbjct: 11 HDLRSPMLPAAAVAAKKPAMEKLCIDDMLQKHCGEFGRWQLKHFILTSLAWALEAFHTMV 70
Query: 74 MIFADREPEYNCL-GQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLV 132
MIFADREP++ C+ G CD G+ +CGL P S W GG G STV+ WGL C +K+KVGLV
Sbjct: 71 MIFADREPDWKCVAGAACDGGD--LCGLSPESREWIGGRGGSTVSDWGLICGDKFKVGLV 128
Query: 133 QALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192
QA+FFFGCMIGAG FGHLSDS LGRKGSLTVVC +N +FGCLTA SPNY YV+LR+LTG
Sbjct: 129 QAVFFFGCMIGAGTFGHLSDSSLGRKGSLTVVCALNTIFGCLTALSPNYWIYVLLRLLTG 188
Query: 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYIASSI 252
FS+GGVGL AFVLATEP+GP+KRGAAGMSTFYFFS GIALLSGIAYIFQTWR LYIASSI
Sbjct: 189 FSSGGVGLTAFVLATEPIGPTKRGAAGMSTFYFFSGGIALLSGIAYIFQTWRYLYIASSI 248
Query: 253 PSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQE--N 310
PS L+++++LPF+ ESPRWYL+RGK+ EAMK+M IA SNG+HLPDGV+L LD+E
Sbjct: 249 PSFLYIILVLPFISESPRWYLIRGKVTEAMKLMSTIASSNGKHLPDGVLLALDNETSPTT 308
Query: 311 DASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNL 370
+ +G + + K+A+ GS+IDV+ SP+TR+RLF+AV +NFL SVVYYG+SLNV+NL
Sbjct: 309 NQGSGLGYFLFFIENKDALIGSIIDVVCSPITRMRLFIAVALNFLASVVYYGLSLNVMNL 368
Query: 371 QTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKI 430
+TNLY+NV++N+VAEMPAFTITAVLLD+ GRKP+T+ T+WFSGFFCL+GSLV N G+WK+
Sbjct: 369 ETNLYVNVMLNSVAEMPAFTITAVLLDRFGRKPLTVATMWFSGFFCLMGSLVSNVGVWKV 428
Query: 431 VRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGW 490
VRM+CGV+GIFG+AGTYNLLFIYT ELFPTVVRNAALGC TQAAQ+GAILAPFVVVLGG+
Sbjct: 429 VRMVCGVLGIFGMAGTYNLLFIYTAELFPTVVRNAALGCTTQAAQMGAILAPFVVVLGGY 488
Query: 491 LPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEG 528
LPFAVFAACGI+GG+FAF LPETLN+PLYDT G++ G
Sbjct: 489 LPFAVFAACGIVGGMFAFNLPETLNQPLYDTFGGLEAG 526
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549803|ref|XP_003543280.1| PREDICTED: organic cation transporter protein-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/516 (71%), Positives = 435/516 (84%), Gaps = 15/516 (2%)
Query: 16 ESLRSPLLSPPKQPPAE--QEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMV 73
LRSP+L + EKL +DDML K+CGEFG WQL+HF+LTSLAWALEAFHTMV
Sbjct: 11 HDLRSPMLPAAAVAAKKPAMEKLCIDDMLQKHCGEFGRWQLKHFILTSLAWALEAFHTMV 70
Query: 74 MIFADREPEYNCL-GQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLV 132
MIFADREP++ C+ G CD G+ +CGL P S W GG G STV+ WGL C +K+KVGLV
Sbjct: 71 MIFADREPDWKCVAGAACDGGD--LCGLSPESREWIGGRGGSTVSDWGLICGDKFKVGLV 128
Query: 133 QALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192
QA+FFFGCMIGAG FGHLSDS LGRKGSLTVVC +N +FGCLTA SPNY YV+LR+LTG
Sbjct: 129 QAVFFFGCMIGAGTFGHLSDSSLGRKGSLTVVCALNTIFGCLTALSPNYWIYVLLRLLTG 188
Query: 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYIASSI 252
FS+GGVGL AFVLATEP+GP+KRGAAGMSTFYFFS GIALLSGIAYIFQTWR LYIASSI
Sbjct: 189 FSSGGVGLTAFVLATEPIGPTKRGAAGMSTFYFFSGGIALLSGIAYIFQTWRYLYIASSI 248
Query: 253 PSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDA 312
PS L+++++LPF+ ESPRWYL+RGK+ EAMK+M IA SNG+HLPDGV+L LD+E
Sbjct: 249 PSFLYIILVLPFISESPRWYLIRGKVTEAMKLMSTIASSNGKHLPDGVLLALDNETSPTT 308
Query: 313 SNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQT 372
+ G +A+ GS+IDV+ SP+TR+RLF+AV +NFL SVVYYG+SLNV+NL+T
Sbjct: 309 NQG----------SDALIGSIIDVVCSPITRMRLFIAVALNFLASVVYYGLSLNVMNLET 358
Query: 373 NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVR 432
NLY+NV++N+VAEMPAFTITAVLLD+ GRKP+T+ T+WFSGFFCL+GSLV N G+WK+VR
Sbjct: 359 NLYVNVMLNSVAEMPAFTITAVLLDRFGRKPLTVATMWFSGFFCLMGSLVSNVGVWKVVR 418
Query: 433 MICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLP 492
M+CGV+GIFG+AGTYNLLFIYT ELFPTVVRNAALGC TQAAQ+GAILAPFVVVLGG+LP
Sbjct: 419 MVCGVLGIFGMAGTYNLLFIYTAELFPTVVRNAALGCTTQAAQMGAILAPFVVVLGGYLP 478
Query: 493 FAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEG 528
FAVFAACGI+GG+FAF LPETLN+PLYDT G++ G
Sbjct: 479 FAVFAACGIVGGMFAFNLPETLNQPLYDTFGGLEAG 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543968|ref|XP_003540430.1| PREDICTED: organic cation transporter protein-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/506 (71%), Positives = 425/506 (83%), Gaps = 13/506 (2%)
Query: 34 EKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCL-GQGCD- 91
EKL +DDML K+CGEFG WQL+HF+LTSLAWALEAFHTMVMIFADREP++ C+ G CD
Sbjct: 28 EKLCIDDMLRKHCGEFGRWQLKHFILTSLAWALEAFHTMVMIFADREPDWRCVSGSVCDD 87
Query: 92 PGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLS 151
G VCGL P SW W GG G STV+ W L C K+KVGLVQA+FF GCMIGAG+FGHLS
Sbjct: 88 SGGGGVCGLSPESWEWVGGRGGSTVSDWSLICGNKFKVGLVQAVFFAGCMIGAGIFGHLS 147
Query: 152 DSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVG 211
DS LGRKGSLTVVC MN +FG LTA SPNY YV+LR+LTG S+G AFVLATEP+G
Sbjct: 148 DSSLGRKGSLTVVCAMNTIFGFLTALSPNYWIYVLLRLLTGLSSGXXXXXAFVLATEPIG 207
Query: 212 PSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRW 271
P+KRGAAGMSTFYFFS GIALLSG+AYIFQTWR LYIASSIPS L+++++LPF+ ESPRW
Sbjct: 208 PTKRGAAGMSTFYFFSGGIALLSGVAYIFQTWRYLYIASSIPSFLYIILVLPFISESPRW 267
Query: 272 YLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGK---------QNYKEE 322
YLVRG + EAMK+M IA SNG+HLPDGV+L LDDE + + G YK E
Sbjct: 268 YLVRGNVTEAMKLMSTIASSNGKHLPDGVLLALDDETSSTINQGSGSGYDITTMMTYKNE 327
Query: 323 LATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNA 382
K+A+ GS+IDV++SP+TR+RLF+AV +NFL SVVYYG+SLNV+NL+TNLYLNV++N+
Sbjct: 328 --NKDALVGSIIDVVRSPITRMRLFIAVALNFLGSVVYYGLSLNVMNLETNLYLNVMLNS 385
Query: 383 VAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFG 442
VAEMPAFTITAVLLD+ GRKP+T+ T+WFSGFFCL+GSLV N G+WK+VRM+CGV+GIFG
Sbjct: 386 VAEMPAFTITAVLLDRFGRKPLTVATMWFSGFFCLMGSLVGNVGVWKMVRMVCGVLGIFG 445
Query: 443 VAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFAVFAACGII 502
+AGTYNLLFIYT ELFPTVVRNAALGC TQA+Q+GAILAPFVVVLGGWLPFAVFAACGI+
Sbjct: 446 MAGTYNLLFIYTAELFPTVVRNAALGCTTQASQMGAILAPFVVVLGGWLPFAVFAACGIV 505
Query: 503 GGLFAFYLPETLNKPLYDTMAGMKEG 528
GG+FAF LPETLN+PLYDT GM+ G
Sbjct: 506 GGMFAFNLPETLNQPLYDTFGGMEAG 531
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545185|ref|XP_003541025.1| PREDICTED: solute carrier family 22 member 15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/531 (70%), Positives = 433/531 (81%), Gaps = 17/531 (3%)
Query: 6 STSSSDPGNGESLRSPLLSPPKQPPAEQ---EKLLVDDMLHKYCGEFGPWQLRHFVLTSL 62
S+S S N + RSPL+S ++P E EKL +D+ML +YCGEFG WQL+HF+LTSL
Sbjct: 5 SSSESKDRNADPSRSPLISAAEKPTGESSKSEKLCIDEMLQRYCGEFGRWQLKHFILTSL 64
Query: 63 AWALEAFHTMVMIFADREPEYNCL----GQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQ 118
AWALEAFHTMV+IFADREPE+ CL G CDP K+VC LEPGSW W G STV +
Sbjct: 65 AWALEAFHTMVIIFADREPEWRCLDGPAGLRCDPAAKSVCRLEPGSWKWVG---DSTVAE 121
Query: 119 WGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS 178
W LFC +K+KVGLVQA+FF GCMIGAG+FGHLSDS LGRKGSLTVVC +N VFG LTAFS
Sbjct: 122 WDLFCGDKFKVGLVQAVFFGGCMIGAGIFGHLSDSFLGRKGSLTVVCALNTVFGTLTAFS 181
Query: 179 PNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAY 238
PNYS YV+ R+LTG STGGVGLCAFVLATEPVGP RGA GMSTFYFFS+GIALLS +AY
Sbjct: 182 PNYSFYVLFRLLTGCSTGGVGLCAFVLATEPVGPKMRGAVGMSTFYFFSSGIALLSVLAY 241
Query: 239 IFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPD 298
IF WR LYIASSIPS+LFL+ +LPF+ ESPRWYLVRG+ +EAMKIM IA SNG +LP
Sbjct: 242 IFPAWRNLYIASSIPSLLFLVFVLPFISESPRWYLVRGRKSEAMKIMSTIATSNGNNLPR 301
Query: 299 GVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSV 358
GVVL LDD+ S + + AVTGS++DVI++P+TR RL LA+ INFLCSV
Sbjct: 302 GVVLTLDDQPPLLPSY-------QSSCHVAVTGSLLDVIRTPMTRARLVLAIVINFLCSV 354
Query: 359 VYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLL 418
VYYG+SLNVVNL+TNLYL V++NAVAEMPAF ITA+LLD+ GRKP+TIGTLWFSG FCL
Sbjct: 355 VYYGLSLNVVNLETNLYLTVILNAVAEMPAFMITALLLDRWGRKPLTIGTLWFSGAFCLA 414
Query: 419 GSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGA 478
GSLV N G+WK VRM+CG++GIFG+AGTYNLLFIYT ELFPTVVRNAALGCATQAAQ+GA
Sbjct: 415 GSLVNNVGVWKGVRMVCGILGIFGMAGTYNLLFIYTAELFPTVVRNAALGCATQAAQMGA 474
Query: 479 ILAPFVVVLGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGE 529
ILAP VVVLGG LPF VFA CGI GG+FAFYLPETLN+PLYDT+ GM+ E
Sbjct: 475 ILAPLVVVLGGSLPFMVFALCGIGGGVFAFYLPETLNQPLYDTLTGMEAKE 525
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543970|ref|XP_003540431.1| PREDICTED: organic cation transporter protein-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/497 (72%), Positives = 423/497 (85%), Gaps = 12/497 (2%)
Query: 34 EKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCL-GQGCD- 91
EKL +DDML K+CGEFG WQL+HF+LTSLAWALEAFHTMVMIFADREP++ C+ G CD
Sbjct: 28 EKLCIDDMLRKHCGEFGRWQLKHFILTSLAWALEAFHTMVMIFADREPDWRCVSGSVCDD 87
Query: 92 PGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLS 151
G VCGL P SW W GG G STV+ W L C K+KVGLVQA+FF GCMIGAG+FGHLS
Sbjct: 88 SGGGGVCGLSPESWEWVGGRGGSTVSDWSLICGNKFKVGLVQAVFFAGCMIGAGIFGHLS 147
Query: 152 DSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVG 211
DS LGRKGSLTVVC MN +FG LTA SPNY YV+LR+LTG S+G AFVLATEP+G
Sbjct: 148 DSSLGRKGSLTVVCAMNTIFGFLTALSPNYWIYVLLRLLTGLSSGXXXXXAFVLATEPIG 207
Query: 212 PSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRW 271
P+KRGAAGMSTFYFFS GIALLSG+AYIFQTWR LYIASSIPS L+++++LPF+ ESPRW
Sbjct: 208 PTKRGAAGMSTFYFFSGGIALLSGVAYIFQTWRYLYIASSIPSFLYIILVLPFISESPRW 267
Query: 272 YLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTG 331
YLVRG + EAMK+M IA SNG+HLPDGV+L LDDE +S +N K+A+ G
Sbjct: 268 YLVRGNVTEAMKLMSTIASSNGKHLPDGVLLALDDET---SSTKNEN-------KDALVG 317
Query: 332 SVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTI 391
S+IDV++SP+TR+RLF+AV +NFL SVVYYG+SLNV+NL+TNLYLNV++N+VAEMPAFTI
Sbjct: 318 SIIDVVRSPITRMRLFIAVALNFLGSVVYYGLSLNVMNLETNLYLNVMLNSVAEMPAFTI 377
Query: 392 TAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLF 451
TAVLLD+ GRKP+T+ T+WFSGFFCL+GSLV N G+WK+VRM+CGV+GIFG+AGTYNLLF
Sbjct: 378 TAVLLDRFGRKPLTVATMWFSGFFCLMGSLVGNVGVWKMVRMVCGVLGIFGMAGTYNLLF 437
Query: 452 IYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFAVFAACGIIGGLFAFYLP 511
IYT ELFPTVVRNAALGC TQA+Q+GAILAPFVVVLGGWLPFAVFAACGI+GG+FAF LP
Sbjct: 438 IYTAELFPTVVRNAALGCTTQASQMGAILAPFVVVLGGWLPFAVFAACGIVGGMFAFNLP 497
Query: 512 ETLNKPLYDTMAGMKEG 528
ETLN+PLYDT GM+ G
Sbjct: 498 ETLNQPLYDTFGGMEAG 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| TAIR|locus:2083425 | 526 | OCT4 "organic cation/carnitine | 0.958 | 0.969 | 0.676 | 2.3e-188 | |
| TAIR|locus:2197244 | 539 | OCT1 "AT1G73220" [Arabidopsis | 0.947 | 0.935 | 0.335 | 2.7e-77 | |
| FB|FBgn0019952 | 548 | Orct "Organic cation transport | 0.757 | 0.735 | 0.347 | 4.2e-67 | |
| TAIR|locus:2207360 | 527 | OCT2 "AT1G79360" [Arabidopsis | 0.896 | 0.905 | 0.327 | 1.8e-64 | |
| TAIR|locus:2032825 | 518 | OCT3 "AT1G16390" [Arabidopsis | 0.879 | 0.903 | 0.336 | 6.9e-63 | |
| ZFIN|ZDB-GENE-040724-70 | 542 | si:dkey-119m7.4 "si:dkey-119m7 | 0.772 | 0.758 | 0.327 | 1.8e-62 | |
| FB|FBgn0086365 | 567 | Orct2 "Organic cation transpor | 0.772 | 0.724 | 0.334 | 6.9e-61 | |
| FB|FBgn0033809 | 563 | CG4630 [Drosophila melanogaste | 0.765 | 0.722 | 0.305 | 1.1e-56 | |
| UNIPROTKB|F1NC31 | 486 | LOC423653 "Uncharacterized pro | 0.734 | 0.804 | 0.362 | 1.6e-56 | |
| ZFIN|ZDB-GENE-040426-2249 | 560 | slc22a6l "solute carrier famil | 0.765 | 0.726 | 0.298 | 1.4e-54 |
| TAIR|locus:2083425 OCT4 "organic cation/carnitine transporter4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1826 (647.8 bits), Expect = 2.3e-188, P = 2.3e-188
Identities = 354/523 (67%), Positives = 409/523 (78%)
Query: 9 SSDPGNGESLRSPLLS--PPKQPPAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAWAL 66
S + NG +R PLL P K+ +E+L +D+ML +YCGEFG WQL+HFVLT +AWAL
Sbjct: 3 SPEDRNGNDVRQPLLEKIPVKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVLTCIAWAL 62
Query: 67 EAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEK 126
EAFHTMVMIFAD+EPE+ C+G C G C L+P SW WT G GSSTV++WGL C +K
Sbjct: 63 EAFHTMVMIFADQEPEWRCVGSDCRVGSLN-CELDPSSWEWTAGKGSSTVSEWGLICGDK 121
Query: 127 YKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVV 186
YKVGLVQALFF GCMIGAGVFGHLSDS+LGRKGSLTVVC++NA+FG TAFSPNY TYVV
Sbjct: 122 YKVGLVQALFFAGCMIGAGVFGHLSDSKLGRKGSLTVVCIINAIFGIATAFSPNYWTYVV 181
Query: 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRAL 246
LR LTGFSTGGVGL AFVLATEP+GPSKRG AGMSTFYFFS GIA+LSGIAY+F++WR L
Sbjct: 182 LRFLTGFSTGGVGLTAFVLATEPIGPSKRGVAGMSTFYFFSAGIAVLSGIAYVFRSWREL 241
Query: 247 YIAXXXXXXXXXXXXXXXXXXXXRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDD 306
+I RWYLVRGK++EAMK+M +IAK+NGRH+P GV L LDD
Sbjct: 242 FIVSSLPSLLFLLIVIPFISESPRWYLVRGKVDEAMKLMHSIAKTNGRHIPAGVTLALDD 301
Query: 307 EQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLN 366
+ EN+ NG++N AV GS+ DVI SPL R+RL ++V I+F S+VYYG+SLN
Sbjct: 302 DVENN--NGERN--------TAVEGSLKDVILSPLMRMRLVISVAISFTVSIVYYGLSLN 351
Query: 367 VVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNG 426
V NL+TNLYLNV VNAV+EMPAF ITAVLLDK GRKP++IGT WFS FCL+G V G
Sbjct: 352 VGNLKTNLYLNVFVNAVSEMPAFAITAVLLDKYGRKPLSIGTQWFSCVFCLVGFSVWGAG 411
Query: 427 IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVV 486
WK VRM+ GV+GIFG+AGTYNLLFIY ELFPTVVRNAALGCATQAAQ+GAILAPFVVV
Sbjct: 412 PWKSVRMVSGVLGIFGMAGTYNLLFIYIAELFPTVVRNAALGCATQAAQMGAILAPFVVV 471
Query: 487 LGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGE 529
LG LPF VFA CG++GG AFYLPETLNKPLYDTM GM E E
Sbjct: 472 LGEELPFGVFAVCGLVGGGLAFYLPETLNKPLYDTMFGMHEAE 514
|
|
| TAIR|locus:2197244 OCT1 "AT1G73220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 180/537 (33%), Positives = 275/537 (51%)
Query: 5 ISTSSSDPGNGESLRSPLLSPPKQPPAEQEKLLVDDMLHKYCGEFGPWQLRHFVLTSLAW 64
IS SS GE+ R +Q P + L VD+++ ++ G G Q+ H +L S+AW
Sbjct: 18 ISNDSSATEKGEATRQ------QQLPNNRYALTVDEVIEQHIGALGFAQILHALLVSIAW 71
Query: 65 ALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCE 124
+A T++ IF+D +P L G ++CGL G W W G + V++W L C+
Sbjct: 72 IFDAQTTLISIFSDAQPAARLLATGAIVEGASLCGLASGEWEWIGPKSDTVVSEWNLICQ 131
Query: 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTY 184
K+ V + LFF G + G+GV+G+L+DS GRK +L + C++ V +FSPN Y
Sbjct: 132 HKFLVAVPSTLFFIGSLFGSGVYGYLADSWFGRKKTLLLSCVLTFVTAFAISFSPNVWVY 191
Query: 185 VVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-TW 243
LR GF G+G C VLATE VG RG G F+FF+ G L +AY+ + +W
Sbjct: 192 AFLRFANGFFRSGIGSCCIVLATEIVGKKWRGQVGQYGFFFFTLGFLSLPLMAYLERKSW 251
Query: 244 RALYIAXXXXXXXXXXXXXXXXXXXXRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLM 303
R LY RW LV+G+ EAM +++ +A+ NG+ LP + L+
Sbjct: 252 RNLYRIISFLPLGYAVCLLPFAYESPRWLLVKGRNKEAMVVLKKLARLNGKQLPADLSLV 311
Query: 304 LDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGI 363
+ +D ++ + + + TK AV R+ + + F VYYGI
Sbjct: 312 DPIPERDDQTSSSEKFWK---TKWAVK--------------RIIMVMMAGFGSGFVYYGI 354
Query: 364 SLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSL-- 421
LN NL NLYL V VNA+ E PA I + LL + R+P+ + + +GF CLL ++
Sbjct: 355 QLNAENLNFNLYLTVAVNALMEFPAVFIGSFLLGVMNRRPLFSNSSYLAGFACLLCAVLS 414
Query: 422 ----VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLG 477
++ + K +++ +G + Y++L++Y ELFPT VRN A+ QA LG
Sbjct: 415 IHRVIRAISVAKWLQLAVEAVGFMASSTAYDVLYVYCVELFPTNVRNTAVSLLRQAFMLG 474
Query: 478 AILAPFVVVLG---GWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGEGV 531
A AP +V LG + F VF ++ G+ + +L ET N PLY+T+A + E +
Sbjct: 475 ASAAPLLVALGRESAMMSFIVFGVASVLSGIVSLWLRETRNAPLYETLAQQGKAEEI 531
|
|
| FB|FBgn0019952 Orct "Organic cation transporter" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 146/420 (34%), Positives = 224/420 (53%)
Query: 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFG 172
+S VT+W L C +LF G ++G+ +FG +SD +LGRK + ++ +FG
Sbjct: 114 NSAVTEWNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSD-KLGRKPTFFASLVLQLIFG 172
Query: 173 CLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIAL 232
L A +P Y +Y + RM+ G +T GV L A+V+A E VG S R AG++ FFS G L
Sbjct: 173 VLAAVAPEYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMFFSVGFML 232
Query: 233 LSGIAYIFQTWRALYIAXXXXXXXXXXXXXXXXXXXXRWYLVRGKLNEAMKIMRAIAKSN 292
+G AY WR L IA RW L++G+ +EA I+ AK N
Sbjct: 233 TAGFAYFIHDWRWLQIAITLPGLLFLCYYWIIPESA-RWLLMKGRKDEAFVIIEKAAKEN 291
Query: 293 GRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTI 352
+P+ + L DE A KQ+ E A++ A T V D+++ P R + L
Sbjct: 292 KVEVPNEIYEQLVDEV---AEKKKQD--EMAASQPAAT--VFDLLRYPNLRRKTLLIFFD 344
Query: 353 NFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFS 412
F+ S VYYG+S N NL N +N +++ E+P +T+ L++ GR+ + GT+ +
Sbjct: 345 WFVNSGVYYGLSWNTNNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVA 404
Query: 413 GFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQ 472
G L V ++ W IV C ++G + +Y ++I++ E FPTVVRN LG ++
Sbjct: 405 GISLLATIFVPSDMNWLIVA--CAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSM 462
Query: 473 AAQLGAILAPFVVVLGG-W--LPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGMKEGE 529
A++G ILAP++ +LG W LP + A + GL + LPETLNKP+ +T+ ++GE
Sbjct: 463 VARVGGILAPYLKLLGEIWRPLPLIICGALSLTAGLLSLLLPETLNKPMPETI---EDGE 519
|
|
| TAIR|locus:2207360 OCT2 "AT1G79360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 163/497 (32%), Positives = 242/497 (48%)
Query: 38 VDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQG--CDPGEK 95
+DD + Y G FG Q L S + +A T + +F D EP ++C C
Sbjct: 20 LDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTDSEPTWHCTDSNSICHESIS 79
Query: 96 TVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL 155
+C L +W+W S +++WGL C + GL ++ FF GC+IG V L+DS L
Sbjct: 80 NICILPKTAWSWDYSPHVSVISEWGLQCAGSFVKGLPESSFFVGCLIGGLVLSTLADSSL 139
Query: 156 GRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKR 215
GRK L + C++ A+ LT FSPN Y VLR + GF +G CA VL+TE VG R
Sbjct: 140 GRKNMLFLSCLVMAISTMLTVFSPNIWVYAVLRFVNGFGRATIGTCALVLSTELVGKKWR 199
Query: 216 GAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIAXXXXXXXXXXXXXXXXXXXXRWYL 273
G G+ +F+ F G L +AY+ + +WR LY RW
Sbjct: 200 GRVGIMSFFGFMLGFLSLPLMAYMNRGSSWRILYAWTSIPTIIYCVLVRFFVCESPRWLF 259
Query: 274 VRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSV 333
VRG+ EA+ I++ +A + G + + + +S + +E+ +T + ++
Sbjct: 260 VRGRREEAISILKRVASIPSTDVSSGGAISM-----SFSSLPFEEDEEKPSTNVNIFTTM 314
Query: 334 IDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITA 393
+++ RL + I F +VYYG+ L + NL N+YL+ NA+ ++PA IT
Sbjct: 315 KVLVEKRWALKRLSAVMAIAFGIGLVYYGMPLALSNLDFNIYLSAAFNALMDLPANLITL 374
Query: 394 VLLDKLGRKPMTIGTLWFSG-----FFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYN 448
L+DKL R+ IG G F L + N+G +++ ++ F +N
Sbjct: 375 FLVDKLSRRNALIGFTALGGVSSVLIFALHNMRIGNHGA---LQLALELISYFSACSAFN 431
Query: 449 LLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFAVFAACGI-IG--GL 505
+ IYT ELFPT VRN+A+ A QA LG + +P +V G F F G+ IG GL
Sbjct: 432 MEMIYTIELFPTCVRNSAIAMARQALVLGGVFSPIMVAAGRKNAFWSFGLFGLAIGLLGL 491
Query: 506 FAFYLPETLNKPLYDTM 522
FA LPET L DTM
Sbjct: 492 FAVGLPETRGSDLCDTM 508
|
|
| TAIR|locus:2032825 OCT3 "AT1G16390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 167/496 (33%), Positives = 240/496 (48%)
Query: 38 VDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNC-----LGQGCDP 92
+++ + + G+FG Q L S AW +A T + +F D +P ++C + C+
Sbjct: 25 LEETIERCIGDFGWAQFLQAALVSFAWFFDAQQTFITVFTDSQPMWHCDNSDRVDSVCNT 84
Query: 93 GEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSD 152
+C L +W+W S +++WGL C + G + FF GC+IG L+D
Sbjct: 85 SSSNLCTLPNQTWSWDLNPHVSIISEWGLQCAGSFLKGFPASSFFLGCLIGGLALSTLAD 144
Query: 153 SRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGP 212
S LGRK L + C++ ++ LTAFS + Y LR L G +G CA VL+TE VG
Sbjct: 145 SSLGRKNMLLLSCLIMSLSSMLTAFSTSIWVYAFLRFLNGCGRATIGTCALVLSTELVGK 204
Query: 213 SKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIAXXXXXXXXXXXXXXXXXXXXR 270
RG G F+ F+ G L + YI + +WR LY+ R
Sbjct: 205 KWRGQVGAMGFFCFTLGFLSLPMLGYINEGNSWRNLYVWTSIPTLIYCCLVRSFVRESPR 264
Query: 271 WYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVT 330
W +V+G+ EA+ I+++IA SN + L E END S + + L
Sbjct: 265 WLIVKGRKEEAVSILQSIA-SNAITMS---FTNLCFEVENDQSKSNPDVYDALK------ 314
Query: 331 GSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFT 390
I V KS R RL A+ + F +VYYG+ L + NL NLYL V+ NA++E PAF
Sbjct: 315 ---ILVRKSWSFR-RLLAAMVVGFGIGMVYYGMPLALTNLNFNLYLGVVFNALSEFPAFL 370
Query: 391 ITAVLLDKLGRKPMTIGTLWFSGFF-CLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNL 449
IT +DK+ R+ IG SG L+ L + G +IV + + F +N+
Sbjct: 371 ITFFFIDKINRRDALIGFTALSGISSALIAVLGQQLGSLQIVLEL---VSFFSACTAFNM 427
Query: 450 LFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLGGWLPFAVFAACG-IIG--GLF 506
IYT E+FPT VRN+A+ QA G + +P +V G F + G IIG GLF
Sbjct: 428 TLIYTIEMFPTCVRNSAISMVRQALVFGGVFSPVMVAAGRENQFWSYGLFGLIIGLCGLF 487
Query: 507 AFYLPETLNKPLYDTM 522
F LPET L DTM
Sbjct: 488 VFGLPETRGSVLCDTM 503
|
|
| ZFIN|ZDB-GENE-040724-70 si:dkey-119m7.4 "si:dkey-119m7.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 142/433 (32%), Positives = 231/433 (53%)
Query: 103 GSWAWTGGDGSSTV-TQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSL 161
G W ++ ST+ T+W L CE + +++ FG ++GA +FG L+D + GR+ +
Sbjct: 104 GGWEFSKEVFLSTIATEWDLVCENATMNNIGSSIYMFGLLVGAVLFGALAD-KYGRRIII 162
Query: 162 TVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMS 221
+ + A+FG AF+PN+ YV+LR + G + V + AFVL TE GP KR AG+
Sbjct: 163 LIGLAIQAIFGVGAAFAPNFYIYVLLRFVVGTTVSAVIMNAFVLGTEWTGPKKRMLAGVI 222
Query: 222 TFYFFSTGIALLSGIAYIFQTWRALYIAXXXXXXXXXXXXXXXXXXXXRWYLVRGKLNEA 281
T YFF G LL+G+AY+ + WR L +A RW + K EA
Sbjct: 223 TDYFFGFGYILLAGVAYLIRDWRKLQLAISAPSFLFLFYVWVLPKSA-RWLMANNKHEEA 281
Query: 282 MKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPL 341
+ ++R A NG+ L D D+ E S K + E+L + T V+D++++P
Sbjct: 282 LDLIRKAALINGKPLED-------DDMELYQSP-KSS--EKLQEQRKYT--VLDLVRTPR 329
Query: 342 TRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGR 401
R + + + F+ +VYYG+SLN+ + N+YL ++ + EMPA TIT L++ R
Sbjct: 330 MRKQSLILFYLWFVNVLVYYGLSLNISDFGMNIYLTQMIFGLVEMPARTITLFTLNR-SR 388
Query: 402 KPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTV 461
+ + L G CLL + ++ +VR + ++G FG+ + ++++IY+ E+FPTV
Sbjct: 389 RISQLAFLAVGGLACLLTIFIPDD--LSVVRTVLAMVGKFGITASLSIVYIYSAEVFPTV 446
Query: 462 VRNAALGCATQAAQLGAILAPFVVVLGG---WLPFAVFAACGIIGGLFAFYLPETLNKPL 518
+R +G + A+ G ++AP + +L G P VF C +IG + +LPET +K L
Sbjct: 447 IRQNGIGMGSMCARAGGVIAPVIYLLRGIGRHTPMVVFGLCPLIGAVLTMFLPETAHKHL 506
Query: 519 YDTMAGMKEGEGV 531
DT+ + E GV
Sbjct: 507 PDTIEDV-ENTGV 518
|
|
| FB|FBgn0086365 Orct2 "Organic cation transporter 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 141/422 (33%), Positives = 221/422 (52%)
Query: 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFG 172
+S VT+W L C + +LF G ++G+ VFG LSD + GRK L ++ +FG
Sbjct: 114 NSAVTEWNLVCGRDFMAATSDSLFMLGVLLGSIVFGQLSD-KYGRKPILFASLVIQVLFG 172
Query: 173 CLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIAL 232
L +P Y TY R++ G +T GV L A+V+A E VGP KR AG+ FFS G L
Sbjct: 173 VLAGVAPEYFTYTFARLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGIFVMMFFSVGFML 232
Query: 233 LSGIAYIFQTWRALYIAXXXXXXXXXXXXXXXXXXXXRWYLVRGKLNEAMKIMRAIAKSN 292
+ AY WR L IA RW L++G+ + A+ M+ A+ N
Sbjct: 233 TAVFAYFVHDWRWLQIALTLPGLIFMFYYWIIPESA-RWLLLKGRKDCAIANMQKAARFN 291
Query: 293 GRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTI 352
+ D + L DE EN KQ +++ E SV D+ P R R L + +
Sbjct: 292 KVEISDEALSELLDEGENSEEKAKQKLEDQ-ELDEGPPPSVWDLFCYPNLR-RKTLLIFL 349
Query: 353 NFLC-SVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWF 411
++L S VYYG+S N NL N+ LN +++ E+PA+ + L++ GR+ + G L
Sbjct: 350 DWLVTSGVYYGLSWNTSNLGGNVLLNFVISGAVEIPAYIFLLLTLNRWGRRSILCGCLVM 409
Query: 412 SGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCAT 471
+G LL +++ + ++ + C ++G + +Y ++I++ E FPTVVRN ALG A+
Sbjct: 410 AGL-SLLATVIIPQRMHTLI-VACAMLGKLAITASYGTVYIFSAEQFPTVVRNVALGAAS 467
Query: 472 QAAQLGAILAPFVVVLGG-W--LPFAVFAACGIIGGLFAFYLPETLNKPLYDTMA-GMKE 527
A++ ++APF+ L W LP + + ++ GL + LPET NKP+ +T+A G +
Sbjct: 468 MVARISGMMAPFLNFLATIWKPLPLLICGSLTLVAGLLSLLLPETHNKPMLETIADGERF 527
Query: 528 GE 529
G+
Sbjct: 528 GK 529
|
|
| FB|FBgn0033809 CG4630 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 129/422 (30%), Positives = 212/422 (50%)
Query: 109 GGDGSSTVTQWGLFCEEK-YKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMM 167
G + V QWGL C E +K+ V + F G ++G + G+L+D R GRK +
Sbjct: 141 GSSERTIVQQWGLQCPENLWKLAFVGTIHFAGLVVGTALSGYLAD-RYGRKHIFLFCIVF 199
Query: 168 NAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFS 227
A+ G A S +Y +++ +L T GV AF++ E VGP KR + + YF++
Sbjct: 200 MALTGVAQALSWDYISFLFFALLNAVGTSGVYPLAFIIGVEMVGPRKREMSSIVLNYFYA 259
Query: 228 TGIALLSGIAYIFQTWRALYIAXXXXXXXXXXXXXXXXXXXXRWYLVRGKLNEAMKIMRA 287
G ALL G++ WR L +A RW L R + +A I+R
Sbjct: 260 VGEALL-GLSVFLPDWRQLQLALSVPPLICVAYFWLVPESV-RWLLARNRREQAGVIIRR 317
Query: 288 IAKSNGRHLPDGVVLMLD-DEQENDASNGKQNYKEE-LATK--EAVTGSVIDVIKSPLTR 343
AK N R + V LM +QE DA G+++ E L K + + +V +V +S +
Sbjct: 318 AAKVNRRDI--SVELMASFKQQELDAETGQEDDVEGGLHVKKDDKIWLAVKEVARSHILM 375
Query: 344 IRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKP 403
R + + I + ++VYYG+SLN +L N YLN + + E+P +++ + L + GR+
Sbjct: 376 GRYAILLLIWAVNAIVYYGLSLNATSLSGNKYLNFALVCLVEIPGYSLAWLFLRRFGRRV 435
Query: 404 MTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVR 463
G+L C+ V W +V + ++G G+ ++ +++ +T E+ PTV+R
Sbjct: 436 ALSGSLLLCSITCVASGFVTLGANWLVVTLF--LVGKLGITSSFAVIYTFTAEMMPTVIR 493
Query: 464 NAALGCATQAAQLGAILAPFVVVLGGW---LPFAVFAACGIIGGLFAFYLPETLNKPLYD 520
+ +G + A+ GA+LAPFV +L + LP +F ++ GL + LPET N+ L D
Sbjct: 494 SGGVGVMSTFARFGAMLAPFVPLLASYYDPLPLLLFGTLSLVAGLLSLLLPETFNRKLPD 553
Query: 521 TM 522
T+
Sbjct: 554 TV 555
|
|
| UNIPROTKB|F1NC31 LOC423653 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 151/416 (36%), Positives = 216/416 (51%)
Query: 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFG 172
+S VT+W L +E YKV L +LFF G +IG FG LSD +LGRK + VFG
Sbjct: 69 TSIVTEWYLIEQEAYKVSLASSLFFAGLLIGNITFGPLSD-KLGRKPVYISGLFFDIVFG 127
Query: 173 CLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIAL 232
+TA +PNY + V R L G GG+ L +FVL E VG S G T F+ GIA+
Sbjct: 128 YVTALAPNYGIFAVSRFLVGIVNGGMALVSFVLTQEYVGKSFWSFTGSLTNLTFAVGIAV 187
Query: 233 LSGIAYIFQTWRALYIAXXXXXXXXXXXXXXXXXXXXRWYLVRGKLNEAMKIMRAIAKSN 292
+ + Y + WR L + RW +GK EA +M+ IA N
Sbjct: 188 YALLGYYVREWRYLALVSNTLGVIFFLLSFMLPESP-RWLYSQGKTAEAEDVMQYIALGN 246
Query: 293 GRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTI 352
GR + + L L S G L E G ++ +IK P+ R R + + I
Sbjct: 247 GR---ERLNLKLKP------SAGT------LRKDEPPPG-ILHLIKHPVLRWRTVVLMYI 290
Query: 353 NFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKL--GRKPMTIGTLW 410
++CS VYYG++LN L NLYLNV + + E+PAF + ++K GR+ + L
Sbjct: 291 WYVCSFVYYGLTLNAGELGGNLYLNVALYGLVEVPAFPLCIFFIEKSWSGRRRTMMWFLM 350
Query: 411 FSGFFCLLGS-LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGC 469
F+GF C+ L KN+G+ + + + G V+ +N+ +IYT+EL+PTV+RNA LG
Sbjct: 351 FAGFACIFTMFLQKNSGLL-LSPTLLALCGKMMVSAAFNIAYIYTSELYPTVLRNAGLGV 409
Query: 470 ATQAAQLGAILAPFVVV---LGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTM 522
+ + + G ILAPFV L +PF VF G+ G +LPETLNKP+ +++
Sbjct: 410 CSMSCRFGGILAPFVPTMKSLSPSVPFVVFGISGLSAGFLTLFLPETLNKPIAESI 465
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| ZFIN|ZDB-GENE-040426-2249 slc22a6l "solute carrier family 22 (organic anion transporter), member 6, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 127/426 (29%), Positives = 224/426 (52%)
Query: 101 EPGSWAWTGGDGSSTV-TQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKG 159
E G W + + SST+ T+W L C+ + + Q + G ++GA VFG LSD R GR+
Sbjct: 114 EDG-WFYNMTEMSSTIITEWDLVCDYRALKQMSQTTYMGGVLVGAIVFGGLSD-RFGRRV 171
Query: 160 SLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAG 219
L + +M A+ G AFS +++ + V R+ G + G+ L +F L E + R G
Sbjct: 172 LLLISNLMMAIGGTCVAFSTSFTMFCVFRVCCGMALSGLVLNSFSLIVEWIPTRVRTVVG 231
Query: 220 MSTFYFFSTGIALLSGIAYIFQTWRALYIAXXXXXXXXXXXXXXXXXXXXRWYLVRGKLN 279
T Y ++TG +L+ +AY + WR L +A RW ++
Sbjct: 232 TGTGYCYTTGQLILAAVAYCIRDWRWLTLAVSLPFYVSFLYSWWFLESA-RWLVLTKNPE 290
Query: 280 EAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKS 339
+A+K ++ +A+ NGR +G + L+ QE+ K+E+A + + S +D++++
Sbjct: 291 QAVKNLKTVARINGRSA-EGDKIDLEMLQES--------MKKEMACSKG-SYSALDLLRT 340
Query: 340 PLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKL 399
R + F S YYG+S+++ ++YL ++ ++PA I + + L
Sbjct: 341 STMRTITICLSAVWFSTSFAYYGLSMDLQKFGVSIYLIQIIFGAVDIPAKIIVTICMSML 400
Query: 400 GRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFP 459
GR+P G L +G L+ LV ++ +++R V+G +A ++N ++Y EL+P
Sbjct: 401 GRRPSQCGALVLAGIMILINLLVPSD--LQMLRTSLAVIGKGCLAASFNCCYLYAGELYP 458
Query: 460 TVVRNAALGCATQAAQLGAILAPFVVVLGG---WLPFAVFAACGIIGGLFAFYLPETLNK 516
TV+R + +G + A+ GA++AP V++LG W+P ++ I+ G+FAF+LPETL++
Sbjct: 459 TVIRQSGMGWVSMMARFGAMVAPMVLLLGDDYPWIPGFIYGGAPIVSGIFAFFLPETLSQ 518
Query: 517 PLYDTM 522
PL DT+
Sbjct: 519 PLPDTI 524
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O76082 | S22A5_HUMAN | No assigned EC number | 0.3003 | 0.8872 | 0.8473 | yes | no |
| Q9LHQ6 | OCT4_ARATH | No assigned EC number | 0.7022 | 0.9605 | 0.9714 | yes | no |
| Q9VCA2 | ORCT_DROME | No assigned EC number | 0.3345 | 0.8966 | 0.8704 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_XI1100 | hypothetical protein (534 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.10530002 | annotation not avaliable (163 aa) | • | 0.405 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 532 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-115 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 6e-38 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-25 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 5e-22 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-20 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 9e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-13 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 9e-12 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 1e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-10 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-10 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-08 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 1e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-07 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 7e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-06 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 1e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-04 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 2e-04 | |
| PRK09952 | 438 | PRK09952, PRK09952, shikimate transporter; Provisi | 8e-04 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 348 bits (896), Expect = e-115
Identities = 182/524 (34%), Positives = 282/524 (53%), Gaps = 68/524 (12%)
Query: 47 GEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNC--------------------- 85
GEFGP+Q R F+L +L AL AFH ++++F PE++C
Sbjct: 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDAANLSSRCELNLTLPRL 60
Query: 86 -------------------LGQGCDPGEKTVCGL-----EPGSWAWTGGD-GSSTVTQWG 120
GC+P + + GL W ++ S+ VT+W
Sbjct: 61 PDGRPESCLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWD 120
Query: 121 LFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPN 180
L CE+ +KV L Q+ FF G ++G+ VFG+LSD R GRK L + ++ AV G LTAFSPN
Sbjct: 121 LVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSD-RFGRKKVLLLSTLVTAVSGVLTAFSPN 179
Query: 181 YSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF 240
Y+ ++V R+L G GG+ + A VL TE + +R G FFS G+ LL +AY
Sbjct: 180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239
Query: 241 QTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGV 300
WR L +A S+P+ LF L+ F+PESPRW + +G++ EA+KI++ IAK NG+ LP V
Sbjct: 240 PDWRWLQLAVSLPTFLFFLLSW-FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298
Query: 301 VLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVY 360
L E D S+ K+ Y S +D+ ++P R + + F + Y
Sbjct: 299 ---LSLSLEKDLSSSKKQY------------SFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343
Query: 361 YGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGS 420
YG+ L++ NL N+YL++ ++ + E+PA IT +L+D+LGR+ +L +G LL
Sbjct: 344 YGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL 403
Query: 421 LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAIL 480
V + + +R V+G FG+ + ++++YT EL+PTVVRN +G + A++G+I+
Sbjct: 404 FVPVDLYF--LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII 461
Query: 481 APFVVVLGG---WLPFAVFAACGIIGGLFAFYLPETLNKPLYDT 521
+PF+V LG +LP +F ++ G+ +LPET PL +T
Sbjct: 462 SPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPET 505
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[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 6e-38
Identities = 116/417 (27%), Positives = 189/417 (45%), Gaps = 49/417 (11%)
Query: 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVL-- 187
GL+ ++F GC+IG+ G L D R GRK SL + ++ + L F+ S Y+++
Sbjct: 49 GLIVSIFSVGCLIGSLFAGKLGD-RFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVG 107
Query: 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQT----- 242
R++ G GG+ + + +E RGA G + GI + + I
Sbjct: 108 RVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSD 167
Query: 243 -WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVV 301
WR +P+IL LLI L FLPESPRW +++GKL EA + +AK G D
Sbjct: 168 GWRIPLGLQFVPAIL-LLIGLLFLPESPRWLVLKGKLEEARAV---LAKLRGVSDVD--- 220
Query: 302 LMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLC----- 356
+ QE S + E+ + E + + R RL + V +
Sbjct: 221 ---QEIQEEKDSLERSVEAEKASWLE--------LFRGKTVRQRLLMGVMLQIFQQLTGI 269
Query: 357 -SVVYYGISL-NVVNLQTNLYLNVLVNAVAEMPAFTITAVLL-DKLGRKPM-TIGTLWFS 412
++ YY ++ + L +L + ++V V FT A+ L D+ GR+P+ +G +
Sbjct: 270 NAIFYYSPTIFETLGLSDSLLVTIIVGVVNF--VFTFIAIFLVDRFGRRPLLLLGAAGMA 327
Query: 413 GFFCLLGS---LVKNNGIWKIVRMICGVMGIFGVAGTYN-LLFIYTTELFPTVVRNAALG 468
F +LG V + IV ++ ++ I A + + ++ +ELFP VR A+
Sbjct: 328 ICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMA 387
Query: 469 CATQAAQLGAILAPFVVV-----LGGWLPFAVFAACGIIGGLFA-FYLPETLNKPLY 519
AT A L L F+ +GG++ F VFA ++ LF F++PET + L
Sbjct: 388 IATAANWLANFLIGFLFPIITGAIGGYV-FLVFAGLLVLFILFVFFFVPETKGRTLE 443
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 105/423 (24%), Positives = 180/423 (42%), Gaps = 52/423 (12%)
Query: 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMM---NAVFGCLTAFSPNYSTYVV 186
GLV ++F G IGA G LSD R GRK SL ++ ++ A+ L AF+ + +V
Sbjct: 74 GLVVSIFLVGGFIGALFAGWLSD-RFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIV 132
Query: 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFY--FFSTGIALLSGIAYIFQT-- 242
R+L G G + +E + RGA +++ Y + GI + G
Sbjct: 133 GRVLLGIGVGIASALVPMYLSEIAPKALRGA--LTSLYQLAITFGILVAYGFGS--GKVS 188
Query: 243 ------WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHL 296
WR IP+ L L + L FLPESPRW + +G++ EA K + + ++G
Sbjct: 189 LNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDK 247
Query: 297 PDGVVLMLDD-EQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFL 355
L L D ++ + + + ++ ++ + + + L F
Sbjct: 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGV---------VLQWFQQFT 298
Query: 356 C--SVVYYG--ISLNV-VNLQTNLYLNVLVNAVAEMPAFTITAV-LLDKLGRKPM-TIGT 408
+++YY I N V+ ++++V AV AFT A+ L+D+ GR+P+ IG
Sbjct: 299 GINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNF--AFTFVAIFLVDRFGRRPLLLIGA 356
Query: 409 LWFSGFFCLLGSLV--KNNGIWKIVRMICGVMGIFGVAGTYNL-----LFIYTTELFPTV 461
+ +LG L G K + V + +A + + ++ +E+FP
Sbjct: 357 AGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAF-FAMGWGPVPWVIVSEIFPLS 415
Query: 462 VRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLPETLN 515
+R + A A L + F+ +G F F ++G +F F+LPET
Sbjct: 416 LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKG 475
Query: 516 KPL 518
+ L
Sbjct: 476 RTL 478
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 5e-22
Identities = 91/365 (24%), Positives = 149/365 (40%), Gaps = 41/365 (11%)
Query: 138 FGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGG 197
G GA FG L+D R+GR+ L ++ +VF L A + N + ++LR L G GG
Sbjct: 63 IGMAFGALFFGPLAD-RIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGG 121
Query: 198 VGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIA---LLSGIAYIFQTWRALYIASSIPS 254
+ L +E RG A F + G A L+G WR+L+ I
Sbjct: 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181
Query: 255 ILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASN 314
+L LL+++ FLPES +LV + +I+ AIA +
Sbjct: 182 LLLLLLLMRFLPESID-FLVSKRPETVRRIVNAIAPQMQAEAQSALP------------- 227
Query: 315 GKQNYKEELATKEAVTGSVIDVIKSP-LTRIRLFLAVTINFLCSVVYYGIS-LNVVNLQT 372
E + SV + RI + L + L VY+ + L + ++
Sbjct: 228 -------EQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVEL 280
Query: 373 NLYLN------VLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNG 426
L+ L N + + I L D+LG + + L + F L+GS + +
Sbjct: 281 GFSLSLAATGGALFNFGGVIGSI-IFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPT 339
Query: 427 IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVV 486
+ ++ + + G F V G + L+ +PT +R +G A +LGAI+ P +
Sbjct: 340 L--LLLLGA-IAGFF-VNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGP---I 392
Query: 487 LGGWL 491
L G+L
Sbjct: 393 LAGYL 397
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[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 3e-20
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRM 189
G++ + + G M+GA +G L+D +LGRK L + +N F ++F Y ++ R+
Sbjct: 205 GMLGLIVYLGMMVGAFFWGGLAD-KLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRL 263
Query: 190 LTGFSTGGVGLCAFVLATEPVGPSKRG----------------AAGMSTFYFFSTGIALL 233
L+GF GG F E + KRG AA M+ G +
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323
Query: 234 SGIAYIFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNG 293
G AY F +WR I + P + F + L F+PESPR++L GK +EA I++ I +N
Sbjct: 324 MGSAYQFHSWRVFVIVCAFPCV-FAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNM 382
Query: 294 R 294
R
Sbjct: 383 R 383
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This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 9e-14
Identities = 112/459 (24%), Positives = 184/459 (40%), Gaps = 117/459 (25%)
Query: 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSL---TVVCMMNAV------FGCLTAFSPN 180
G A GC+IG + G+ S +R GR+ SL V+ ++A+ FG + N
Sbjct: 58 GFCVASALIGCIIGGALGGYCS-NRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDN 116
Query: 181 YS---TYVVLRMLTGFSTGGVGLCAFV--LATEPVGPSK-RGA----------AGMSTFY 224
+V+ R++ G GVGL + + + + P+ RG G Y
Sbjct: 117 TGYVPEFVIYRIIGGI---GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVY 173
Query: 225 FFSTGIALLSGIAYIFQT-WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMK 283
F + IA +++ WR ++ + +IP++LFL+++ F+PE+PR+ + RGK +A
Sbjct: 174 FVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY-FVPETPRYLMSRGKQEQAEG 232
Query: 284 IMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTR 343
I+R I G L + QE S V VI V+ S +
Sbjct: 233 ILRKI---MGNTLATQAL------QEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQ 283
Query: 344 IRLFLAVTINFLCSVVYY--------GISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVL 395
V IN V+YY G S ++ LQT ++V + FT+ A++
Sbjct: 284 -----FVGIN---VVLYYAPEIFKTLGASTDIALLQT-----IIVGVIN--LTFTVLAIM 328
Query: 396 -LDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFI-- 452
+DK GRKP+ I +G+L G++ + G G LL +
Sbjct: 329 TVDKFGRKPLQI-----------IGALGMAIGMFSL-----GTAFYTQAPGIVALLSMLF 372
Query: 453 YT---------------TELFPTVVRNAALGCATQAAQLGAILAPFVVV----------- 486
Y +E+FP +R AL A AAQ +A + V
Sbjct: 373 YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAV-AAQW---IANYFVSWTFPMMDKNSW 428
Query: 487 ----LGGWLPFAVFAACGIIGGLFAF-YLPETLNKPLYD 520
+ ++ G++ LF + ++PET K L +
Sbjct: 429 LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 467
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Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLR 188
GL+ + F G +G+ + G+LSD R GR+ L + ++ A+ L AF+ + +V R
Sbjct: 36 AGLIVSAFSLGYALGSLLAGYLSD-RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGR 94
Query: 189 MLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQT---WRA 245
L G G + A L E P +RG A F G L + + WR
Sbjct: 95 FLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRW 154
Query: 246 LYIASSIPSILFLLIILPFLP 266
L++ +I +L L++L L
Sbjct: 155 LFLILAILGLLLALLLLFLLR 175
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MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 9e-13
Identities = 72/363 (19%), Positives = 124/363 (34%), Gaps = 59/363 (16%)
Query: 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLR 188
+GL+ F G + + G LSD R GR+ L + ++ A+ L F+ + +VLR
Sbjct: 34 IGLLLTAFSLGYALAQPLAGRLSD-RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92
Query: 189 MLTGFSTGGVGLCAFVLATEPVGPSKRGAA--GMSTFYFFSTGIA-LLSGIAYIFQTWRA 245
+L G G + A L + P +RG A +S + + LL G+ WRA
Sbjct: 93 VLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRA 152
Query: 246 LYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLD 305
++ +I ++L ++ LP P EA + K
Sbjct: 153 AFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK--------------- 197
Query: 306 DEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISL 365
++ L + F + + L
Sbjct: 198 ------------------------------LLLRDPVLWLLLALLLFGFAFFALLTYLPL 227
Query: 366 NVVNLQTNLYLNVLVNAVAEM---PAFTITAVLLDKLGRKP---MTIGTLWFSGFFCLLG 419
L + L L+ +A + + L D+LGR+ + + L + L
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL 287
Query: 420 SLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAI 479
SL +++ + ++ G FG + L ++L P R A G A LG
Sbjct: 288 SLTESSLWLLVALLLLG----FGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA 343
Query: 480 LAP 482
L P
Sbjct: 344 LGP 346
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 9e-12
Identities = 83/413 (20%), Positives = 138/413 (33%), Gaps = 101/413 (24%)
Query: 134 ALFFFGCMIGAGVFGHLSDSRLGRKGSLTV-VCMM---NAVFGCLTAFSPNYST------ 183
A F +GA VFGH D R+GRK +L + + MM + G L P+Y+T
Sbjct: 42 AAGFLARPLGAIVFGHFGD-RIGRKKTLVITLLMMGIGTLLIGLL----PSYATIGIWAP 96
Query: 184 --YVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALL--SGIAYI 239
++ R++ GFS GG A + E P KRG +F + LL + +
Sbjct: 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGF--YGSFQQVGAPVGLLLAALTVLL 154
Query: 240 FQT-----------WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAI 288
WR ++ S +L L + L E+P
Sbjct: 155 LSYLLGDDALLEWGWRIPFL-VSAVLVLIGLYLRRNLEETP-----------------VF 196
Query: 289 AKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFL 348
K+ +H G + + + R L
Sbjct: 197 EKAQEKHKKK-------------------------------RGPIAETLTKH--RKPFLL 223
Query: 349 AVTINFLCSVVYYGI-------SLNVVNLQTNLYLNVLVNAVAEMPAFT-ITAVLLDKLG 400
+ + + +Y I + L N L VL+ ++ ++ L D++G
Sbjct: 224 GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIG 283
Query: 401 RKPMTIGTLWFSGFFC--LLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELF 458
R+P+ I + LL +L+ + ++ G+ I + + ELF
Sbjct: 284 RRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALI--GGMYTGPMGSFLPELF 341
Query: 459 PTVVRNAALGCATQAAQ-LGAILAPFVVVL-----GGWLPFAVFAACGIIGGL 505
PT VR A A + AP++ G W + A + GL
Sbjct: 342 PTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 80/388 (20%), Positives = 130/388 (33%), Gaps = 71/388 (18%)
Query: 120 GLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP 179
G F + + GA +FG D R GR+ + ++ + F+P
Sbjct: 40 GEFGLTTVDAASLISAALISRWFGALMFGLWGD-RYGRRLPMVTSIVLFSAGTLACGFAP 98
Query: 180 NYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYI 239
Y T + R++ G GG + E R A ++ G A+++ Y
Sbjct: 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG-AVVAAQVYS 157
Query: 240 F------QTWRALYIASSIPSILFLLIILPFLPESPRW-------YLVRGKL-------- 278
WRAL+ S +P I+F L + +PE+ W LVR +
Sbjct: 158 LVVPVWGDGWRALFFISILP-IIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH 216
Query: 279 ---NEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQN-YKEELATKEAVTGSVI 334
N M + A+ +S G+ P V L++ N S+ Q+ L +
Sbjct: 217 RIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGL----- 271
Query: 335 DVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAV 394
SP T + + I + +G + + + ++L + +P F I
Sbjct: 272 ----SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--- 324
Query: 395 LLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454
G +G F + G+ G +L +
Sbjct: 325 -----GANVAVLGLGLFFQQML-----------------------VQGIWG---ILPKHL 353
Query: 455 TELFPTVVRNAALGCATQAAQLGAILAP 482
E FPT R A LG Q LG LAP
Sbjct: 354 GEYFPTDQRAAGLGFTYQLGNLGGALAP 381
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 16/184 (8%)
Query: 341 LTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLY--------LNVLVNAVAEMPAFTIT 392
L L FL S YYG+ + + L + + + + +
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 393 AVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFI 452
+L D+LGR+ + L LG L+ + ++ ++ FG+ + L
Sbjct: 232 GLLSDRLGRRRLL---LLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288
Query: 453 YTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA 507
+EL P R A G LG L P + G F + AA ++ L
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
Query: 508 FYLP 511
LP
Sbjct: 349 LLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 101/461 (21%), Positives = 159/461 (34%), Gaps = 95/461 (20%)
Query: 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRK---GSLTVVCMMNAVFGCLTAFSPNYSTYVV 186
V G + G FG L+D +LGRK G ++ ++ V L+ S S
Sbjct: 59 AAVNGSASIGTLAGQLFFGWLAD-KLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMAT 117
Query: 187 L---RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF--- 240
L R G GG + ++ +E RGA + F GI L I +
Sbjct: 118 LCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI-LAGAIVALIVLA 176
Query: 241 ------------------------QTWRALYIASSIPSILFLLIILPFLPESPRW-YLVR 275
WR L ++P++L L L +PE+PR+ V
Sbjct: 177 GFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT-IPETPRYTADVA 235
Query: 276 GKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVID 335
+ +A M A+ + ++ E + + + +A
Sbjct: 236 KDVEQAASDMSAVLQVK-----------IEAEPDE-----VEKASTAVEVPKASWSDFFT 279
Query: 336 VIKSPLTRIRLFLAVTIN--FLCSVVYYGISLN----------VVNLQTNLYLNVLVN-A 382
R L T FL + +YG++LN TN L A
Sbjct: 280 --HFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTA 337
Query: 383 VAEM--------PAFTITAVLLDKLGRKPMTIGTLWFSG-FFCLLGSLVKNNGIWKIVRM 433
V + P + +T L+D +GRKP+ + + F +LG N + +
Sbjct: 338 VGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG--FAYNHLSTHGFL 395
Query: 434 ICGVMG-IFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVL----- 487
V+ F G FI E+FPT R+ A G + + + GAI+ F +
Sbjct: 396 AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455
Query: 488 --------GGWLPFA--VFAACGIIGGLFAFYLPETLNKPL 518
G W+ +FA +G LF +PET K L
Sbjct: 456 DPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSL 496
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 138 FGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGG 197
G + GA + G L+D R+GRK L V + +F TA + ++ + +V R+LTG GG
Sbjct: 61 LGLLPGALLGGRLAD-RIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGG 119
Query: 198 VGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF---QTWRALYIASSIPS 254
L +E VGP RG A + G AL S I + WR ++ +
Sbjct: 120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGP 179
Query: 255 ILFLLIILPFLPESPR 270
+L + +++ +LPES
Sbjct: 180 LLLVPLLMRWLPESRA 195
|
Length = 406 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Query: 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLR 188
G + + G +GA + L+ RL R+ L + + V L+A +P+++ ++ R
Sbjct: 50 AGQLITAYALGVALGAPLLALLTG-RLERRRLLLGLLALFIVSNLLSALAPSFAVLLLAR 108
Query: 189 MLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGI---AYIFQT--W 243
L G + G A LA V P KRG A ++ F +A + G+ ++ Q W
Sbjct: 109 ALAGLAHGVFWSIAAALAARLVPPGKRGRA-LALV-FTGLTLATVLGVPLGTFLGQLFGW 166
Query: 244 RALYIASSIPSILFLLIILPFLPES 268
RA ++A ++ ++L LL++ LP S
Sbjct: 167 RATFLAIAVLALLALLLLWKLLPPS 191
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 39/178 (21%), Positives = 63/178 (35%), Gaps = 16/178 (8%)
Query: 346 LFLAVTINFLCSVVYYGISLNVVNLQTNLYLN-------VLVNAVAEMPAFTITAVLLDK 398
L L FL + +S + L +L L+ V ++ + L D+
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 399 LGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELF 458
GR+ + + L LL + + + + R + G G Y E F
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG----LGGGALYPAAAALIAEWF 116
Query: 459 PTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYLP 511
P R ALG + LGA+L P + LG F + A G++ L +L
Sbjct: 117 PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRM 189
G V + F +G ++G G L D R G + +L V ++ VF L AF+ Y + +LR+
Sbjct: 32 GYVFSAFSWGYVVGQFPGGWLLD-RFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV 90
Query: 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIAL---LSGIAYIFQTWRAL 246
L G + ++ S+R A G + L G I +W+
Sbjct: 91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWA 150
Query: 247 YIASSIPSILFLLIILPFLPESPR 270
+I + I++ ++ L F+P+ P+
Sbjct: 151 FIIEGVLGIIWGVLWLKFIPDPPQ 174
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 8/144 (5%)
Query: 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRM 433
+Y + +A +P ++A+L+DK+GR M G++ S C S N ++ +
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF--GNSESAMIAL 654
Query: 434 ICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFV----VVLGG 489
+C G+ +N L + T EL+P+ R A G + A+L + V +
Sbjct: 655 LCLFGGL--SIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITK 712
Query: 490 WLPFAVFAACGIIGGLFAFYLPET 513
P +A GGL A LP+T
Sbjct: 713 AAPILFASAALACGGLLALKLPDT 736
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCM-MNAVFGCLTAFSPNYSTYVV 186
+ GL+ +LF G ++GA + G LSD RLGR+ L ++ + + A+ L A +P+ + +V
Sbjct: 212 EAGLLLSLFGLGGILGALLGGLLSD-RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLV 270
Query: 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAG--MSTFYFFSTGIA-LLSGIAYIFQTW 243
+L GF G LA+E P RG A +TF + LL+G+ +
Sbjct: 271 ALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY 330
Query: 244 RALYIASSIPSILFLLIILPF 264
+++ + ++L L++L
Sbjct: 331 GGVFLILAALALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 15/155 (9%)
Query: 361 YGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGS 420
GIS + L + L A+A+ A L D+ GR+ + + L LL
Sbjct: 27 LGISPTEIGLLLTAFS--LGYALAQPLA----GRLSDRFGRRRVLLIGLLLFALGLLLLL 80
Query: 421 LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAIL 480
+ + ++R++ G G + + FP R ALG + LGA L
Sbjct: 81 FASSLWLLLVLRVLQG----LGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAAL 136
Query: 481 AP----FVVVLGGW-LPFAVFAACGIIGGLFAFYL 510
P + L GW F + A ++ + A L
Sbjct: 137 GPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171
|
Length = 346 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 58/385 (15%)
Query: 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLR 188
+GL+ + F I V G +SD R + L + ++ A+ FS + L
Sbjct: 32 LGLLLSSFSIAYGISKFVMGSVSD-RSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALW 90
Query: 189 MLTGFSTGGVGLCAFVLATEPVGPSKRGAAG--MSTFYFFSTGIA---LLSGIAYIFQTW 243
L G G T+ S+RG + + G+ +L GIA ++ +W
Sbjct: 91 ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SW 149
Query: 244 RALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLM 303
++I I +I+ LI L +SP+ L A
Sbjct: 150 HWVFIVPGIIAIIVSLICFLLLRDSPQSC----GLPPA---------------------- 183
Query: 304 LDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGI 363
+E N+ +G KEE TK+ + V+ + + L+ VV GI
Sbjct: 184 --EEMPNEEPDGDAEKKEEELTKK--QIFLQYVLLNKV----LWYISLGYVFVYVVRTGI 235
Query: 364 ----------SLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKL-GRKPMTIGTLWFS 412
+ + + + + + L DKL + + + +
Sbjct: 236 LDWSPLYLTQEKGFSKEKASWA--FTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMA 293
Query: 413 GFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQ 472
L N ++ +IC F V G L+ + +EL P A G
Sbjct: 294 LIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGF 353
Query: 473 AAQLGAILAP----FVVVLGGWLPF 493
A LG ILA ++ GW
Sbjct: 354 FAYLGGILAGLPLGYLADGFGWAGA 378
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRM 189
GL+ A + G +I + + G L+D R GRK L V + + + A S N + ++ R
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTD-RFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARF 59
Query: 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIAL-------LSGIAYIFQT 242
L GF + L + P +RG A S GIAL L G+ F
Sbjct: 60 LQGFGAAFALVAGAALIADIYPPEERGVA----LGLMSAGIALGPLLGPPLGGVLAQFLG 115
Query: 243 WRALYIASSIPSILFLLIILPFLPES 268
WRA ++ +I ++ +++ LPE+
Sbjct: 116 WRAPFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 397 DKLGRKP-MTIGTLWFSG--FFCLLGSLVKNNGIWK--IVRMICGVMGIFGVAGTYNLLF 451
D+ GR+ M I + FS C G W I R++ G G+AG Y
Sbjct: 80 DRYGRRLAMVISIVLFSVGTLACGFAP-----GYWTLFIARLVIG----MGMAGEYGSSA 130
Query: 452 IYTTELFPTVVRNAALGCATQAAQLGAILA----PFVVVLGGWLPFAVFAACGIIGGLFA 507
Y E +P +RN A G +GA++A VV + GW A+F GI+ +FA
Sbjct: 131 TYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR--ALFFI-GILPIIFA 187
Query: 508 FYLPETL 514
+L + L
Sbjct: 188 LWLRKNL 194
|
Length = 496 |
| >gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 142 IGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYST--------YVVLRMLTGF 193
+G VFGH D RLGRK L + M + L P++ST V LR + GF
Sbjct: 79 LGGVVFGHFGD-RLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGF 137
Query: 194 STGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQT 242
+ GG A +LA E P + A F+S+G+ + G+ + T
Sbjct: 138 AVGGEWGGAALLAVES-APKNKKA-------FYSSGVQVGYGVGLLLST 178
|
Length = 438 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.98 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.98 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.93 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.93 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.93 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.92 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.92 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.92 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.92 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.9 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.89 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.88 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.87 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.87 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.86 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.85 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.84 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.83 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.83 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.82 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.82 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.81 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.77 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.75 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.67 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.64 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.63 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.62 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.61 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.59 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.57 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.54 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.5 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.5 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.5 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.48 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.41 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.38 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.33 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.33 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.33 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.32 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.32 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.31 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.29 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.29 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.25 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.25 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.24 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.23 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.23 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.18 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.18 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.18 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.18 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.16 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.15 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.15 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.14 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.14 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.14 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.14 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.14 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.13 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.13 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.13 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.12 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.12 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.12 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.11 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.1 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.1 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.09 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.08 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.08 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.08 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.08 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.07 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.07 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.06 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.06 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.06 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.05 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.05 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.05 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.04 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.03 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.02 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.02 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.01 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.0 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.99 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.99 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.98 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.98 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.98 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.98 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.96 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.93 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.92 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.92 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.92 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.9 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.89 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.89 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.88 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.87 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.85 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.85 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.85 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.83 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.82 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.81 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.81 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.81 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.81 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.79 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.77 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.76 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.74 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.74 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.73 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.73 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.73 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.72 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.72 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.72 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.71 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.7 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.69 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.69 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.69 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.66 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.66 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.66 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.61 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.61 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.58 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.57 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.51 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.51 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.49 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.46 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.45 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.38 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.33 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.32 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.32 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.28 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.28 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.14 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.14 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.1 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.09 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.08 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.06 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.87 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.86 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.7 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.65 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.62 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.57 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.51 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.36 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.31 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.27 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.2 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.14 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.07 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.04 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.84 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.77 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.37 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.24 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.24 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.07 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.85 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.66 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 95.53 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.49 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.83 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 94.33 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.08 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.74 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.62 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.72 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 91.52 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 90.09 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 89.87 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 89.62 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 85.34 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 85.23 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 84.46 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 82.42 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 81.63 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 80.98 |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=372.81 Aligned_cols=455 Identities=37% Similarity=0.691 Sum_probs=373.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCC--C------------C--CCCCCcccCC----------
Q 009563 47 GEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQ--G------------C--DPGEKTVCGL---------- 100 (532)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~--~------------~--~~~~~~~~~~---------- 100 (532)
|+++++|+..++++++..+..+++.....+....|||.|... + + +++....|..
T Consensus 1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
T TIGR00898 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDAANLSSRCELNLTLPRLPDGRPESCLRFMVDQWANPS 80 (505)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCCcccCChHhHhceeccCCCCCCCCCCccccccchhhhc
Confidence 468999999999999999999999999999999999999711 0 0 0000011211
Q ss_pred -------------------CCCcceecCC-CCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHH
Q 009563 101 -------------------EPGSWAWTGG-DGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGS 160 (532)
Q Consensus 101 -------------------~~~~~~~~~~-~~~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~ 160 (532)
+...|.|+.+ ..|.+.+|||+.|+++.+.+++.+++.++..++++++|+++|| +|||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~ 159 (505)
T TIGR00898 81 LLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKV 159 (505)
T ss_pred ccccccchhcccCCCCCCCCCCCcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHH
Confidence 2235888864 4789999999988889999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009563 161 LTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF 240 (532)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 240 (532)
+.++.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.+++.+
T Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 160 LLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hchHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchh
Q 009563 241 QTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYK 320 (532)
Q Consensus 241 ~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (532)
.+||+.|++.+++.++.. +..+++||+|+|+..+++.+++.+.+++..+.|+...+++...... ++
T Consensus 240 ~~wr~~~~~~~i~~~~~~-~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~---~~---------- 305 (505)
T TIGR00898 240 PDWRWLQLAVSLPTFLFF-LLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSL---EK---------- 305 (505)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhh---hh----------
Confidence 799999999998888776 4557899999999999999999998888877765433221110000 00
Q ss_pred hhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 009563 321 EELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLG 400 (532)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~g 400 (532)
. ......+.+++++++++.++...+.....++.....+|....+.+..+.+.+......++..+++.++.+++.||+|
T Consensus 306 -~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~g 383 (505)
T TIGR00898 306 -D-LSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLG 383 (505)
T ss_pred -h-hhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 00001134678899999888888888778888888888888888877777777777778888999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHH
Q 009563 401 RKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAIL 480 (532)
Q Consensus 401 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i 480 (532)
||+.+.++.++.+++++++.+......+ ...+..++.+++....++..+.+..|.+|++.|+++.|+.+....+|+++
T Consensus 384 rr~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i 461 (505)
T TIGR00898 384 RRYTMAASLLLAGVALLLLLFVPVDLYF--LRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII 461 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCchH--HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHH
Confidence 9999999988888888777766544322 34445556667777788889999999999999999999999999999999
Q ss_pred HHHHHH---hhhhhHHHHHHHHHHHHHHHHhhccCCCCCChhh
Q 009563 481 APFVVV---LGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYD 520 (532)
Q Consensus 481 ~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 520 (532)
+|.+.. .+...++.+++++.+++.++.+++||++++++++
T Consensus 462 ~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~ 504 (505)
T TIGR00898 462 SPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504 (505)
T ss_pred HhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence 998873 3456678888888888888888899999887754
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=366.58 Aligned_cols=434 Identities=24% Similarity=0.402 Sum_probs=335.8
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeec
Q 009563 39 DDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQ 118 (532)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 118 (532)
|+.+++. +.++++|.++++++++.+.++++...+++. . |.+.++
T Consensus 153 d~~l~~~--~~~~~~~~l~~i~~l~~~~~g~d~~~is~i--------l--------------------------p~i~~~ 196 (742)
T TIGR01299 153 ELIIQEC--GHGRFQWALFFVLGLALMADGVEVFVVGFV--------L--------------------------PSAEKD 196 (742)
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHH
Confidence 4444553 578999999999999999999998877777 5 889999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhcccc
Q 009563 119 WGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGV 198 (532)
Q Consensus 119 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 198 (532)
+++ +..+.+++.++++++.+++++++|+++|| +|||+++++++++.++++++++++++++.++++|++.|++.|+.
T Consensus 197 ~gl---s~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~ 272 (742)
T TIGR01299 197 LCI---PDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGA 272 (742)
T ss_pred hCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred chhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----------------chHHHHHHHHHHHHHHHHHHh
Q 009563 199 GLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----------------TWRALYIASSIPSILFLLIIL 262 (532)
Q Consensus 199 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----------------~wr~~f~~~~~~~~~~~~~~~ 262 (532)
.+...+++.|++|+++|++.+++...++.+|.++++.++..+. +||+.+++.+++.++.. +..
T Consensus 273 ~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~ 351 (742)
T TIGR01299 273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GAL 351 (742)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999999887664432 69999998888776655 777
Q ss_pred cccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCc-cccccch---hhhhhh---h-hcCccc-h---hhhh-hhhhcc
Q 009563 263 PFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPD-GVVLMLD---DEQEND---A-SNGKQN-Y---KEEL-ATKEAV 329 (532)
Q Consensus 263 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~---~-~~~~~~-~---~~~~-~~~~~~ 329 (532)
+++||||+|+..+++.+++.+.++++++.|.+.... +.....+ ...... + +..... + .... ......
T Consensus 352 ~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (742)
T TIGR01299 352 TFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGI 431 (742)
T ss_pred HHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhH
Confidence 889999999999999999999999987766442211 1100000 000000 0 000000 0 0000 001111
Q ss_pred ccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccccCc--------------------------------------
Q 009563 330 TGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQ-------------------------------------- 371 (532)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 371 (532)
+..++++|+.+ +++..+...+.++...+.+|++..+++..-
T Consensus 432 ~~~~~~lf~~~-~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (742)
T TIGR01299 432 WGNFLRCFNPE-VREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGE 510 (742)
T ss_pred HHHHHHHcCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccc
Confidence 22456666554 667777888888888888887766644210
Q ss_pred --------------------------------------------------------------------------------
Q 009563 372 -------------------------------------------------------------------------------- 371 (532)
Q Consensus 372 -------------------------------------------------------------------------------- 371 (532)
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 590 (742)
T TIGR01299 511 YDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGD 590 (742)
T ss_pred cccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCcc
Confidence
Q ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhh
Q 009563 372 ----TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTY 447 (532)
Q Consensus 372 ----~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (532)
...+....+.+++.+++.+++++++||+|||+++.++.++.+++++++.+..+.. ..++..++.+++.++.+
T Consensus 591 ~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~----~ll~~~~l~g~~~~~~~ 666 (742)
T TIGR01299 591 DEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSES----AMIALLCLFGGLSIAAW 666 (742)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHH----HHHHHHHHHHHHHHHHH
Confidence 0012224455677889999999999999999999999999998888877665432 33444456667777788
Q ss_pred hhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHhhccCCCCCCh
Q 009563 448 NLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----VLGGWLPFAVFAACGIIGGLFAFYLPETLNKPL 518 (532)
Q Consensus 448 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 518 (532)
+...++++|.+|++.|++++|+.++...+|++++|++. ..+...+|++++++.++++++.+++||++++.+
T Consensus 667 ~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l 741 (742)
T TIGR01299 667 NALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTRGQVL 741 (742)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 88999999999999999999999999999999999887 233456788888888888888888899988754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=301.80 Aligned_cols=430 Identities=27% Similarity=0.501 Sum_probs=358.4
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceee
Q 009563 38 VDDMLHKYCGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVT 117 (532)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 117 (532)
.++..+.. +++++||...+....+++.+.+........ . |.+.+
T Consensus 63 v~ea~~ai--gfgrfq~yl~~~ag~gwmad~m~~m~~s~i--------~--------------------------~~l~~ 106 (528)
T KOG0253|consen 63 VDEAMNAI--GFGRFQWYLFFVAGMGWMADAMEMMLLSLI--------L--------------------------PALDE 106 (528)
T ss_pred ehhhhhhc--CcccchhhHHHHhhhHHHHHHHHHHHHHHH--------H--------------------------HHHHh
Confidence 45555654 699999999999999999999998888888 5 88889
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccc
Q 009563 118 QWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGG 197 (532)
Q Consensus 118 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 197 (532)
.++. +..|.+++......|..+++..+|.++|+ +|||+.+....+..++..++.++++|+.++.+.|.+.|+|.|+
T Consensus 107 ~w~~---s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg 182 (528)
T KOG0253|consen 107 VWGP---SEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG 182 (528)
T ss_pred hhch---hhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC
Confidence 9999 99999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhh
Q 009563 198 VGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLV 274 (532)
Q Consensus 198 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~ 274 (532)
.|...++-.|..|..+|...+-.. ..+.+|.+....+..... ||||.....+.+..+.+ ...+++|||||++..
T Consensus 183 -~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpRf~~~ 259 (528)
T KOG0253|consen 183 -LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYESPRFYLA 259 (528)
T ss_pred -ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccCcchhhh
Confidence 888888888999999998876666 899999999888887766 99999988887777766 888899999999999
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhh-hhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHH
Q 009563 275 RGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQEN-DASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTIN 353 (532)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (532)
+++++++.+.++++++.|+.+.|.........++.+ ++.+.++.+. +..+....+..+++. |.+++..+.....+
T Consensus 260 ~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~---~a~ke~rg~~~nLls-p~lrkttlllw~iw 335 (528)
T KOG0253|consen 260 KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS---SAAKEVRGGTTNLLS-PKLRKTTLLLWRIW 335 (528)
T ss_pred cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh---ccccccccchHhhcC-hHHHHHHHHHHHHH
Confidence 999999999999999999999987665444332222 1111111111 111223334555554 55788888888899
Q ss_pred HHHHHHHHHhhhcccc---------------------------CcchHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHH
Q 009563 354 FLCSVVYYGISLNVVN---------------------------LQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTI 406 (532)
Q Consensus 354 ~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~ 406 (532)
+.+.+.||+..+.... .....+...+...+..++|.++.++++||+|||+.+.
T Consensus 336 fgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMa 415 (528)
T KOG0253|consen 336 FGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMA 415 (528)
T ss_pred HhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHH
Confidence 9988888877653211 1123456677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-
Q 009563 407 GTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV- 485 (532)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~- 485 (532)
...++.+++.+++......+ ...+..+...++..+.+.+.+.|..|++|+..|+++.|.....+.+|+++.|++.
T Consensus 416 l~l~~f~iflfll~~c~~rn----~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~ 491 (528)
T KOG0253|consen 416 LSLILFGIFLFLLTTCKTRN----AYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAM 491 (528)
T ss_pred HHHHHHHHHHHHHHHhcCcc----hhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHH
Confidence 99999999999888877766 4566777788888999999999999999999999999999999999999999988
Q ss_pred --HhhhhhHHHHHHHHHHHHHHHHhhcc-CCCCCCh
Q 009563 486 --VLGGWLPFAVFAACGIIGGLFAFYLP-ETLNKPL 518 (532)
Q Consensus 486 --~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 518 (532)
......+..+++.+++++.+...++| |+|+|++
T Consensus 492 ~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 492 RAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 23356677888888999989888887 8988864
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=330.97 Aligned_cols=416 Identities=23% Similarity=0.310 Sum_probs=292.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeec-----cccc
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQ-----WGLF 122 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~ 122 (532)
++++++++++.++.++.+++++|....+.. . |.+.++ .+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~--------~--------------------------~~~~~~~~~~~~~~- 53 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLV--------T--------------------------KMLGYVYYHGKGPL- 53 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhccCcccc-
Confidence 688999999999999999999998887776 3 333332 234
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcch------HHHHHHHHHHHHhhcc
Q 009563 123 CEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPN------YSTYVVLRMLTGFSTG 196 (532)
Q Consensus 123 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~ 196 (532)
+..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++..+++++++++++ ++.++++|+++|++.|
T Consensus 54 --~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 54 --PSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence 66788999999999999999999999999 99999999999999999999998866 7899999999999999
Q ss_pred ccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------chHHHHHHH
Q 009563 197 GVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--------------------------TWRALYIAS 250 (532)
Q Consensus 197 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--------------------------~wr~~f~~~ 250 (532)
...+....++.|++|+++|++++++.+.+..+|..+++.++..+. +||+.|.+.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~ 210 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG 210 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence 999999999999999999999999999999999998888765431 699999888
Q ss_pred HHHHHHHHHHHhcccccCchhHhhcCCHH-HHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhcc
Q 009563 251 SIPSILFLLIILPFLPESPRWYLVRGKLN-EAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAV 329 (532)
Q Consensus 251 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (532)
+++.++.. +..+++||||+|+..+++.+ ++++.+.+..+.+..+..++ . ++. ++++ +..
T Consensus 211 ~ip~~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~---~~~--~~~~----------~~~ 270 (502)
T TIGR00887 211 AVPALLAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDE----V---EKA--STAV----------EVP 270 (502)
T ss_pred HHHHHHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCccc----c---cch--hccc----------cch
Confidence 88877755 66788999999998887764 35554544432111100000 0 000 0000 001
Q ss_pred ccchhhhhcCh---HHHHHHHHHHHHHHHHHHHHHHhhhcc----ccCcch------H---------HHHHHHHHHHHHH
Q 009563 330 TGSVIDVIKSP---LTRIRLFLAVTINFLCSVVYYGISLNV----VNLQTN------L---------YLNVLVNAVAEMP 387 (532)
Q Consensus 330 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~---------~~~~~~~~~~~~~ 387 (532)
+.+++++++++ +.++..+.....++...+.+|+...+. ...+.+ . ........++.++
T Consensus 271 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 350 (502)
T TIGR00887 271 KASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVP 350 (502)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12355666532 222333333333344444444432221 111110 0 0012233445667
Q ss_pred HHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhH
Q 009563 388 AFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNN-GIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAA 466 (532)
Q Consensus 388 ~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~ 466 (532)
+.++.++++||+|||++++.+..++.+++.++...... .... ......+...++..+..+..+.+..|.+|++.|+++
T Consensus 351 g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~ 429 (502)
T TIGR00887 351 GYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHG-FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTA 429 (502)
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHH
Confidence 88899999999999999988887777776666543321 1111 111111122222234556778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hh-------------hhhHHHHHHHHHHHHHHHHhhccCCCCCChhhhH
Q 009563 467 LGCATQAAQLGAILAPFVVV--LG-------------GWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTM 522 (532)
Q Consensus 467 ~g~~~~~~~~g~~i~p~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 522 (532)
.|+.+.++.++++++|.+.. .. ....|++++++.+++.++.+++||+++++++|..
T Consensus 430 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 430 HGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhhh
Confidence 99999999999999988771 11 2356788888888777777778999999886643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=309.61 Aligned_cols=467 Identities=36% Similarity=0.574 Sum_probs=371.2
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceecc---------CCCCCCC------C-----C------cccC
Q 009563 46 CGEFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCL---------GQGCDPG------E-----K------TVCG 99 (532)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~---------~~~~~~~------~-----~------~~~~ 99 (532)
.++.+++|................+.....+....|++.|. ..|.... . . ..+.
T Consensus 10 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (521)
T KOG0255|consen 10 VGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPDHHCTEWGCLNDAEDSCLVYWDPTLDPANPLNWPSWKKWLLVIV 89 (521)
T ss_pred hcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCchhhhhhcccCCcccceecccCccCcCCccccccccccccccc
Confidence 56889999999888888887777766677777777864441 2332110 0 0 0122
Q ss_pred CCCCcceecCCC-CCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc
Q 009563 100 LEPGSWAWTGGD-GSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS 178 (532)
Q Consensus 100 ~~~~~~~~~~~~-~~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~ 178 (532)
.....|.|+.+. .-.+..++++.|++.....+..+++++|..+|++++|+++|| +|||+++++++++..++.++.+++
T Consensus 90 ~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a 168 (521)
T KOG0255|consen 90 ICLDGWVYDYGSSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA 168 (521)
T ss_pred cccceeEecCCCCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh
Confidence 345688888765 446667789999999999999999999999999999999999 999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHH
Q 009563 179 PNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-TWRALYIASSIPSILF 257 (532)
Q Consensus 179 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-~wr~~f~~~~~~~~~~ 257 (532)
+|++.+++.|++.|++.++.......++.|++++++|+.+..+ ......+..+++.+++++. +||+.+++..++.++.
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~ 247 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLF 247 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 6666666666666666666 9999999999999987
Q ss_pred HHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhh
Q 009563 258 LLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVI 337 (532)
Q Consensus 258 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (532)
. +.+++.||+|||+..+++.+++.+.+++..+.|+.....+....... ..+........++..+.+++
T Consensus 248 ~-~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~ 315 (521)
T KOG0255|consen 248 L-LLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLEL-----------LLRPLKLLFTEPKISFLDLF 315 (521)
T ss_pred H-HHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHH-----------HhhHhhhhccCCCCchhhhh
Confidence 7 44777779999999999999999999999887633322221111110 00011111112334588999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH
Q 009563 338 KSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCL 417 (532)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~ 417 (532)
+.+.+++..+...+.++.....+|+..+.....+.+.+......+.....+....+...|+.|||.....+..+..++++
T Consensus 316 ~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~ 395 (521)
T KOG0255|consen 316 RTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLL 395 (521)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999888888888888888999999999999999999999999999
Q ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHhh----hhhHH
Q 009563 418 LGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVLG----GWLPF 493 (532)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~----~~~~~ 493 (532)
...+....... .+..+...+..++.+..+.....+..|.+|+..|..+.+.......+|++++|.+.... ....+
T Consensus 396 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~ 474 (521)
T KOG0255|consen 396 LFGWLPDDLGG-WLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGL 474 (521)
T ss_pred HHHHhhccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 99988766542 13455666666777778888899999999999999999999999999999999988322 22333
Q ss_pred HHHHHHHHHHHHHH-hhccCCCCCChhhhHHhhhh
Q 009563 494 AVFAACGIIGGLFA-FYLPETLNKPLYDTMAGMKE 527 (532)
Q Consensus 494 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~ 527 (532)
.+++....+..++. +++||++++.+.+..++.++
T Consensus 475 ~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~~ 509 (521)
T KOG0255|consen 475 ILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAEN 509 (521)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHHh
Confidence 33455555555554 88999999999887776663
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=299.60 Aligned_cols=384 Identities=25% Similarity=0.361 Sum_probs=292.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHhhccccchhhh
Q 009563 127 YKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS---PNYSTYVVLRMLTGFSTGGVGLCAF 203 (532)
Q Consensus 127 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~ 203 (532)
...+.+++++.+|.++|+++.|+++|| +|||..+.++.++..++.++..++ +++.+++++|++.|+..|......+
T Consensus 60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~p 138 (485)
T KOG0569|consen 60 LLWSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVP 138 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 468889999999999999999999999 999999999999988888877765 7899999999999999999999999
Q ss_pred heeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHhcccccCchhHhh-cCC
Q 009563 204 VLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----TWRALYIASSIPSILFLLIILPFLPESPRWYLV-RGK 277 (532)
Q Consensus 204 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~-~~~ 277 (532)
.|+.|..|++.||....+.+.+..+|..++..++..-. .|++.+.+..+++++.. +...++||||||+.. |++
T Consensus 139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PESPk~Ll~~k~~ 217 (485)
T KOG0569|consen 139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPESPKYLLIKKGD 217 (485)
T ss_pred HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHcCC
Confidence 99999999999999999999999999999987765433 79999999999998877 888999999999998 899
Q ss_pred HHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHH-
Q 009563 278 LNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLC- 356 (532)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 356 (532)
.++|++.+++++..++.+... +...++.++ .+..++...+++++++++..++...+.+...+..
T Consensus 218 ~~~A~~sl~~y~G~~~~~~~~--e~~~~e~~~-------------~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq 282 (485)
T KOG0569|consen 218 EEEARKALKFYRGKEDVEAEI--EEMLREIEE-------------EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQ 282 (485)
T ss_pred HHHHHHHHHHHhCCCcchhHH--HHHHHHHHH-------------hccccccCCcHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 999999998885442211100 000000000 0011124457899999999988877766666553
Q ss_pred -----HHHHHHhhhccccC--cchHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhc---cc
Q 009563 357 -----SVVYYGISLNVVNL--QTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKN---NG 426 (532)
Q Consensus 357 -----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~---~~ 426 (532)
...+|...++...- ...........++..++.++++.+++||+|||++++.+..++.++.+++..... ..
T Consensus 283 ~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~ 362 (485)
T KOG0569|consen 283 FSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF 362 (485)
T ss_pred hcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555544321 223345566677888899999999999999999999999988888877765422 11
Q ss_pred -hhH-HHHHHHHHHHHHHHH-hhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHH
Q 009563 427 -IWK-IVRMICGVMGIFGVA-GTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAA 498 (532)
Q Consensus 427 -~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~ 498 (532)
.|. +..+++.+++.+.++ +..|+.+.+.+|++|++.|+.+.++....+++..++-.... .+|. ..|+.+.+
T Consensus 363 ~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i 441 (485)
T KOG0569|consen 363 GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVI 441 (485)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHH
Confidence 111 122344444444444 34689999999999999999999999999988876655444 4445 66777766
Q ss_pred HHHHHHHH-HhhccCCCCCChhhhHHhhhhc
Q 009563 499 CGIIGGLF-AFYLPETLNKPLYDTMAGMKEG 528 (532)
Q Consensus 499 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~ 528 (532)
.+.+..+. +.++||||+|+..|..++.+++
T Consensus 442 ~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 442 PLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 66665554 5788999999999888776644
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=280.38 Aligned_cols=394 Identities=21% Similarity=0.188 Sum_probs=302.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
...++|+++++.+++++...++.+.+..+. . |.+.+|.++ |+.
T Consensus 22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a--------~--------------------------p~l~e~~~l---sk~ 64 (448)
T COG2271 22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLA--------M--------------------------PALIEDGGL---SKT 64 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--------c--------------------------HHHHHhcCC---CHH
Confidence 356899999999999999999999999998 6 999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheee
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
|.|++.+.++++|.++-++.|.++|| .++|+.+.+|+++.++..++++++++.+.+.+..++.|..+|.-.|.+...+.
T Consensus 65 ~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~ 143 (448)
T COG2271 65 QLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTIT 143 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHH--HHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHH
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIA--YIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAM 282 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~--~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 282 (532)
.|++++|||+..++++.+.++|..+.+++. +.+. +||..|++.++++++..++.++..+|+|+..-. .+.++.+
T Consensus 144 ~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~~~ 222 (448)
T COG2271 144 HWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEEYR 222 (448)
T ss_pred HHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHHhh
Confidence 999999999999999999999999999888 6666 999999999999999998999999999853210 0111110
Q ss_pred HHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 009563 283 KIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYG 362 (532)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (532)
+ ++.+..+++++.+. ......-.+-+++||..|...+...+.+..-......
T Consensus 223 ~---------------------d~~e~~~~~~~~~~-------ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW 274 (448)
T COG2271 223 G---------------------DPLEIYEEEKENEG-------LTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDW 274 (448)
T ss_pred c---------------------CchhhhhhhccCCC-------ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00000000000000 0011123456788988777666666666664444433
Q ss_pred hhhcccc-Ccc---hHHHHHHHHHHHHHHHHHHHHHHHhhh--CCchhHH-HHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 009563 363 ISLNVVN-LQT---NLYLNVLVNAVAEMPAFTITAVLLDKL--GRKPMTI-GTLWFSGFFCLLGSLVKNNGIWKIVRMIC 435 (532)
Q Consensus 363 ~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~--gr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (532)
.|.++.+ .+. +......+.-.++++|++++|+++||+ |||.... +.+++..++...+...++.+.. +..++
T Consensus 275 ~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~--l~~~~ 352 (448)
T COG2271 275 GPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYL--LDAIL 352 (448)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHH--HHHHH
Confidence 3444433 222 334455666788999999999999995 6676554 4445555555555555544322 56666
Q ss_pred HHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHH-HHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhh
Q 009563 436 GVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQL-GAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
+++.|+...+..-+.-..+.|..|.+..|++.|+...++++ |...+.... .+|+...|+++.+.++++.++.+.
T Consensus 353 l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 353 LFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred HHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 77777777777777888899999999999999999999998 666654444 457888888888888887776644
Q ss_pred c
Q 009563 510 L 510 (532)
Q Consensus 510 l 510 (532)
+
T Consensus 433 ~ 433 (448)
T COG2271 433 V 433 (448)
T ss_pred H
Confidence 3
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=303.98 Aligned_cols=429 Identities=19% Similarity=0.279 Sum_probs=289.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhH
Q 009563 49 FGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYK 128 (532)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~ 128 (532)
..+++++...++.++.+.+++|...++.. . + .+.+.-.+.+.+++++ +..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------~----~~~~~~~~~~~~~~~~---~~~~ 56 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGT--------V--------------E----SLNTVFVAPQNLSESA---ANSL 56 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHh--------H--------------H----HHHHHhcccccccccC---ChhH
Confidence 45677888888888889999987766655 2 0 0000001234445588 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc------------chHHHHHHHHHHHHhhcc
Q 009563 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS------------PNYSTYVVLRMLTGFSTG 196 (532)
Q Consensus 129 ~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~ 196 (532)
.+++.+++.++..++++++|+++|| +|||++++++.++++++.++++++ +.++.++++|+++|++.|
T Consensus 57 ~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g 135 (479)
T PRK10077 57 LGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVG 135 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHh
Confidence 9999999999999999999999999 999999999999999998888763 235678899999999999
Q ss_pred ccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----------chHHHHHHHHHHHHHHHHHHhccc
Q 009563 197 GVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----------TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 197 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----------~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
...+...++++|++|+++|++++++.+.+..+|.++++.+++.+. +||+.|++.+++.++.. +..+++
T Consensus 136 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l 214 (479)
T PRK10077 136 LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFV 214 (479)
T ss_pred HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcC
Confidence 999999999999999999999999999999999999887765431 89999999888887765 557789
Q ss_pred ccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHH
Q 009563 266 PESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIR 345 (532)
Q Consensus 266 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (532)
||+|+++..+++.+++++..++..+.+ +. .+..++ .....++... ..+..+.-. ...
T Consensus 215 ~~s~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~--------~~~~~~~~~~---~~~~~~~~~--~~~ 271 (479)
T PRK10077 215 PETPRYLMSRGKQEQAEGILRKIMGNT------LA----TQALQE--------IKHSLDHGRK---TGGKLLMFG--VGV 271 (479)
T ss_pred CCCcHHHHHcCCHHHHHHHHHHHcCCh------hH----HHHHHH--------HHHHHHHhhh---hhhhhcchh--HHH
Confidence 999998877777777665554432110 00 000000 0000000000 000111100 011
Q ss_pred HHHHHHHHHH-----HHHHHHHhhhccccCc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH
Q 009563 346 LFLAVTINFL-----CSVVYYGISLNVVNLQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCL 417 (532)
Q Consensus 346 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~ 417 (532)
.......... .....|..+......+ ..........++..+++.++.+++.||+|||++++.+..+.+++.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~ 351 (479)
T PRK10077 272 IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 351 (479)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHH
Confidence 1111111111 1112222333322222 1233344456677888999999999999999999999988888877
Q ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHh-hhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----------
Q 009563 418 LGSLVKNNGIWKIVRMICGVMGIFGVAG-TYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----------- 485 (532)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----------- 485 (532)
++..................+.+++.+. ..+..+.++.|.+|++.|+++.|+.+...++|.++++.+.
T Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~ 431 (479)
T PRK10077 352 SLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVA 431 (479)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhh
Confidence 7765432221111223333444444433 2367789999999999999999999999999888875554
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH-hhccCCCCCChhhhHHhhhhcCCC
Q 009563 486 VLGGWLPFAVFAACGIIGGLFA-FYLPETLNKPLYDTMAGMKEGEGV 531 (532)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 531 (532)
..+....|++++++.+++.++. ++.||+++++.+|.+++.++..|+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 478 (479)
T PRK10077 432 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETKK 478 (479)
T ss_pred hccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcccC
Confidence 2334556777777766666555 456899998888776666555443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=295.07 Aligned_cols=385 Identities=20% Similarity=0.209 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh--HHHH
Q 009563 54 LRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY--KVGL 131 (532)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~--~~~~ 131 (532)
++++.+++++.+++++|...+++. . |.+.++|+... ++. ..+.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~--------~--------------------------~~i~~~~~~~~-~~~~~~~~~ 59 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFV--------A--------------------------YALGKVFFPGA-DPSVQMIAA 59 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHhhCCCC-CcHHHHHHH
Confidence 456777889999999999998888 5 78888886521 121 1222
Q ss_pred --HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHH--------HHHHHHHHHhhccccchh
Q 009563 132 --VQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYST--------YVVLRMLTGFSTGGVGLC 201 (532)
Q Consensus 132 --~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~ 201 (532)
+.++.++++.++++++|+++|| +|||+++.+++++++++++++++++|+.+ +++.|+++|++.|+.++.
T Consensus 60 ~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~ 138 (490)
T PRK10642 60 LATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTG 138 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHH
Confidence 2578889999999999999999 99999999999999999999999999875 899999999999999999
Q ss_pred hhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh----------h-chHHHHHHHHHHHHHHHHHHhcccccCch
Q 009563 202 AFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF----------Q-TWRALYIASSIPSILFLLIILPFLPESPR 270 (532)
Q Consensus 202 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----------~-~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 270 (532)
..+++.|++|+++|+++.++...+..+|..+++.+...+ . |||+.|++.+++.++.. +....+||+|+
T Consensus 139 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp~ 217 (490)
T PRK10642 139 ASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETPA 217 (490)
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCChh
Confidence 999999999999999999999988888888877654332 1 89999999876666544 55678899987
Q ss_pred hHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHH
Q 009563 271 WYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAV 350 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (532)
+...+++.++.. .+. .. +..+.++++++++. ++......
T Consensus 218 ~~~~~~~~~~~~----------~~~-------------------~~----------~~~~~~~~~~~~~~--~~~~~~~~ 256 (490)
T PRK10642 218 FQQHVDKLEQGD----------REG-------------------LQ----------DGPKVSFKEIATKH--WRSLLTCI 256 (490)
T ss_pred HHHHHHhhhhhc----------ccc-------------------cc----------ccccCCHHHHHHHh--HHHHHHHH
Confidence 643221110000 000 00 00111344455431 11122111
Q ss_pred HHHH----HHHHHHHHhhhcc-ccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH-HHh
Q 009563 351 TINF----LCSVVYYGISLNV-VNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLL-GSL 421 (532)
Q Consensus 351 ~~~~----~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~-~~~ 421 (532)
...+ .........+.++ ...+.+ .........++.+++.++.|+++||+|||+.+..+.++..+..+. +..
T Consensus 257 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~ 336 (490)
T PRK10642 257 GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFIL 336 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1212222223333 222222 222333445667788889999999999999887776544433322 222
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHH-----hh-hhhHHHH
Q 009563 422 VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVV-----LG-GWLPFAV 495 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~-----~~-~~~~~~~ 495 (532)
....... ..++..++.+++.+...+....+..|.+|++.|+++.|+.+....+++.++|.+.. .+ ...++++
T Consensus 337 ~~~~~~~--~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~ 414 (490)
T PRK10642 337 INSNVIG--LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYY 414 (490)
T ss_pred HhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 2222211 33344455555555666667778889999999999999876667777778887762 12 2334445
Q ss_pred HHHHHHHHHHHHhhccCCCCCCh
Q 009563 496 FAACGIIGGLFAFYLPETLNKPL 518 (532)
Q Consensus 496 ~~~~~~~~~~~~~~l~~~~~~~~ 518 (532)
..+..+++.+..+++||++++..
T Consensus 415 ~~~~~~i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 415 LMVVAVIGLITGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHHHHHHHHhccccCCCC
Confidence 55555666666667788766544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=280.85 Aligned_cols=385 Identities=13% Similarity=0.139 Sum_probs=262.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVG 130 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~ 130 (532)
|.+|+++.+++++++++++|..+.++. . |.+.+|+|+ +..+.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~--------------------------~~l~~~~~~---s~~~~g 46 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFA--------G--------------------------LTMGKDLGL---SATMFG 46 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHH--------H--------------------------HhhHhhcCC---CHHHHH
Confidence 567889999999999999999999988 5 889999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeeccc
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPV 210 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 210 (532)
++.+++.+++++++++.|+++|| +|||+++..+.++++++++++++++|++++++.|+++|++.+...+....++.|++
T Consensus 47 ~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~ 125 (412)
T TIGR02332 47 LAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWF 125 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHH
Q 009563 211 GPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---------TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEA 281 (532)
Q Consensus 211 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---------~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~ 281 (532)
|+++|+++++++..+.++|.++++.+++.+. |||+.|++.+++.++..++.++++||+|+...- ...++.
T Consensus 126 ~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~ 204 (412)
T TIGR02332 126 PAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDK 204 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHH
Confidence 9999999999999999999999999987652 899999999988888776777888999852100 011111
Q ss_pred HHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHH
Q 009563 282 MKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYY 361 (532)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (532)
+...+.. +.+..+.++ .++. ..+ .+...+..+++++ ++.++......+...........
T Consensus 205 ~~~~~~~-~~~~~~~~~--------~~~~---~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 263 (412)
T TIGR02332 205 KALKEMI-DNDQLTLEQ--------PEGA---FAH--------AAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINI 263 (412)
T ss_pred HHHHHHH-Hhccccccc--------cccc---ccc--------ccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 000000000 0000 000 0000011233333 34444333333332222323333
Q ss_pred HhhhccccC--cc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhH-HHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 009563 362 GISLNVVNL--QT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMT-IGTLWFSGFFCLLGSLVKNNGIWKIVRMIC 435 (532)
Q Consensus 362 ~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (532)
..+.++.+. +. ..........++.+++.++.++++||+++|+.. .....+..+.. .+...... .. ..+..
T Consensus 264 ~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~~~-~~--~~~~~ 339 (412)
T TIGR02332 264 WTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASATDH-NL--IQLLG 339 (412)
T ss_pred HHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhcCC-HH--HHHHH
Confidence 344444432 21 223334555677888999999999999977753 33333333332 22222222 11 22222
Q ss_pred HHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh-hhhHHHHHHHH
Q 009563 436 GVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG-GWLPFAVFAAC 499 (532)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~-~~~~~~~~~~~ 499 (532)
..+..++.....+..+....|.+|++.|+++.|+.+...++|++++|.+. ..+ +...+.+.+++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 340 IIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 22233333333444556667889999999999999999999999999877 222 45555555443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=263.94 Aligned_cols=367 Identities=19% Similarity=0.189 Sum_probs=291.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVG 130 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~ 130 (532)
+..|..++.+.++.|..+.+-+.+.-+ + |++.+|+|+ |..+.|
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gL--------L--------------------------p~iA~dl~v---s~~~aG 51 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGL--------L--------------------------PPIAADLGV---SEGAAG 51 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhc--------h--------------------------HHHHHHcCC---CHHHHH
Confidence 445667777777777777766655555 4 999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeeccc
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPV 210 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 210 (532)
++.|+|.++.+++.++...+.|| +.||++++..+.++.++.+++++++||+.++++|++.|++.|..++...++..+..
T Consensus 52 ~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv 130 (394)
T COG2814 52 QLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV 130 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHH
Q 009563 211 GPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRA 287 (532)
Q Consensus 211 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 287 (532)
|+++|++++++...+..++.++|.+++.++. |||+.|+..+.++++..+..+..+| |+.. +++
T Consensus 131 pp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~~---------- 196 (394)
T COG2814 131 PPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI--SGS---------- 196 (394)
T ss_pred CccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--CCC----------
Confidence 9999999999999999999999999999987 9999999999999999988888998 2100 000
Q ss_pred HHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009563 288 IAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNV 367 (532)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (532)
+.....+..+.+|+|..+..+....+....+...|.++.-++
T Consensus 197 --------------------------------------~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L 238 (394)
T COG2814 197 --------------------------------------LPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFL 238 (394)
T ss_pred --------------------------------------CCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHH
Confidence 000111345678899888877777777666655554444443
Q ss_pred cc-Cc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009563 368 VN-LQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGV 443 (532)
Q Consensus 368 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (532)
++ .+ .......+..+++.++|++++|++.|| +.|+.+.....+.++..+.+.+..+... ...+..++.++..
T Consensus 239 ~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~---~~~~~~~~wg~a~ 314 (394)
T COG2814 239 ESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPA---LALALLFLWGFAF 314 (394)
T ss_pred HHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHh
Confidence 33 32 234566677889999999999999999 8888888888888888877776655542 4455555566666
Q ss_pred HhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhhccC
Q 009563 444 AGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYLPE 512 (532)
Q Consensus 444 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 512 (532)
............+.. ++.+..+.+++....++|..+|..+. ..|+....++.+.+.+++.++.+...+
T Consensus 315 ~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 315 SPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred hhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666677743 56779999999888888877766665 556777778888887777776655443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=276.37 Aligned_cols=351 Identities=14% Similarity=0.027 Sum_probs=246.9
Q ss_pred cceecCCCCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHH
Q 009563 104 SWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYST 183 (532)
Q Consensus 104 ~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (532)
.|....+..|.+++|||+ |..+.|++.+.+.+++.+++++.|+++|| +|||+++..+......+.+....++++++
T Consensus 6 ~~~~~~~~lp~i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred HHHHHHhhHHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 344455556999999999 99999999999999999999999999999 99999876665555444433334479999
Q ss_pred HHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHH
Q 009563 184 YVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLI 260 (532)
Q Consensus 184 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~ 260 (532)
+++.|+++|++.+. .+.....++|++|+++|++++++...+..+|.++++.++..+. |||+.|++.+++.++..++
T Consensus 82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 99999999999986 4555566699999999999999999999999999999998886 9999999989888887777
Q ss_pred HhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcCh
Q 009563 261 ILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSP 340 (532)
Q Consensus 261 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (532)
.++++||+|++..+ +.+ . + +....++++++++
T Consensus 161 ~~~~lp~~p~~~~~--~~~--------------------------~-------------~-------~~~~~~~~ll~~~ 192 (368)
T TIGR00903 161 VLAALPALPFQAAE--GFG--------------------------F-------------K-------DAVKEFGALAGRK 192 (368)
T ss_pred HHHHcCCCCCCCCC--Ccc--------------------------h-------------H-------HHHHHHHHHHcCh
Confidence 88889998753100 000 0 0 0001356788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhCCc---hhHH-HHHHHHHHHH
Q 009563 341 LTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRK---PMTI-GTLWFSGFFC 416 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~---~~~~-~~~~~~~~~~ 416 (532)
.++......++............+.++.+.+.+.. ......+..+.+.+..+++.||..|| +... ....+.++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~ 271 (368)
T TIGR00903 193 DLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFF 271 (368)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 77665555444444433333334444443333322 23333444455666668888887654 3222 2333333333
Q ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH--Hh-hhhhHH
Q 009563 417 LLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV--VL-GGWLPF 493 (532)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~--~~-~~~~~~ 493 (532)
..+....+ .. ..++...+.+++....++..+++..|.+|++.|+++.|+.+..+++|+.++|.+. .. +....|
T Consensus 272 ~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f 347 (368)
T TIGR00903 272 LALAFELN--RL--ALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYF 347 (368)
T ss_pred HHHHHccc--cH--HHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33332222 11 2344445566666677778889999999999999999999999999998988877 22 556778
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 009563 494 AVFAACGIIGGLFAFYLPE 512 (532)
Q Consensus 494 ~~~~~~~~~~~~~~~~l~~ 512 (532)
.++++..+++.+..+.+++
T Consensus 348 ~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 348 TFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 8888888877776654443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=285.58 Aligned_cols=385 Identities=21% Similarity=0.303 Sum_probs=280.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhhee
Q 009563 127 YKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLA 206 (532)
Q Consensus 127 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 206 (532)
.+.+|+.+.+.++..++++++|+++|+ +|||+.++++.+++.++.+++++++|+.+++++|+++|+|.|......+.|+
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~ 167 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYI 167 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhH
Confidence 466999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHH
Q 009563 207 TEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAM 282 (532)
Q Consensus 207 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 282 (532)
+|+.|++.||...+..+....+|..++..++.... +||..+.+..+++++..+. .+++||+|+|+.++++.++++
T Consensus 168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~ 246 (513)
T KOG0254|consen 168 SEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAK 246 (513)
T ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHH
Confidence 99999999999999999999999999977777764 6999999999999998855 999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHH----
Q 009563 283 KIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSV---- 358 (532)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 358 (532)
+.+.++...++.+...+.... +.. .............++++++ +..++..........+...
T Consensus 247 ~~l~~l~g~~~~~~~~~~~~~----~~~---------~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~ 312 (513)
T KOG0254|consen 247 RSLKRLRGLSPEDVEVELELL----KIK---------LLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGIN 312 (513)
T ss_pred HHHHHHhCCCCcchHHHHHHH----HHH---------HHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCc
Confidence 999888653311111111000 000 0000000001112344444 4444445544444444322
Q ss_pred --HHHHhhhccccCcchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccc---------
Q 009563 359 --VYYGISLNVVNLQTNL-YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNG--------- 426 (532)
Q Consensus 359 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--------- 426 (532)
.+|...++......+. .......++..+++.+++.++.||+|||++++.+...+.+++++++......
T Consensus 313 ~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~ 392 (513)
T KOG0254|consen 313 YVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKG 392 (513)
T ss_pred eEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 2333333222222222 5556667788888999999999999999999999999999988887653221
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH----Hhh-hhhHHHHHHHHHH
Q 009563 427 IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----VLG-GWLPFAVFAACGI 501 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~-~~~~~~~~~~~~~ 501 (532)
..+.......+.......+..++.+.+.+|.+|.+.|+.+.++....+++...+-.... ... ....|..++....
T Consensus 393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~ 472 (513)
T KOG0254|consen 393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICL 472 (513)
T ss_pred hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 11112222222333344456678889999999999999999999999888766554333 121 2456666666666
Q ss_pred HHHH--HHhhccCCCCCChhhhHHhhhh
Q 009563 502 IGGL--FAFYLPETLNKPLYDTMAGMKE 527 (532)
Q Consensus 502 ~~~~--~~~~l~~~~~~~~~~~~~~~~~ 527 (532)
+..+ ..+++||+|++++++.++..++
T Consensus 473 ~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 473 LSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 5555 4478899999999988765544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=285.28 Aligned_cols=392 Identities=15% Similarity=0.105 Sum_probs=268.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhH
Q 009563 49 FGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYK 128 (532)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~ 128 (532)
..|..+.++.++++++++.+.++...+.. . |.+.+|+|+ +..+
T Consensus 23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~--------~--------------------------~~i~~~~~~---s~~~ 65 (467)
T PRK09556 23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAA--------Q--------------------------NDMISTYGL---STTE 65 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhh--------h--------------------------HHHHHhcCC---CHHH
Confidence 45678888999999999999999888877 5 899999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHhhccccchhhh
Q 009563 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF-----SPNYSTYVVLRMLTGFSTGGVGLCAF 203 (532)
Q Consensus 129 ~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~ 203 (532)
.|++.+++.+++++++++.|+++|| +|||+++.++.++++++.++.++ +++++.+++.|+++|++.+...+...
T Consensus 66 ~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 144 (467)
T PRK09556 66 LGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSY 144 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHH
Confidence 9999999999999999999999999 99999999988888877766654 68999999999999999999999999
Q ss_pred heeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh------chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCC
Q 009563 204 VLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ------TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGK 277 (532)
Q Consensus 204 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~------~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~ 277 (532)
.++.||+|+++|++++++...+.++|.++++.+..++. +||..|.+.+++.++..++.+++.++.|+......
T Consensus 145 ~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~- 223 (467)
T PRK09556 145 STITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK- 223 (467)
T ss_pred HHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC-
Confidence 99999999999999999999999999999988875442 59999998888888777666667777764211000
Q ss_pred HHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccc-hhhhhcChHHHHHHHHHHHHHHHH
Q 009563 278 LNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGS-VIDVIKSPLTRIRLFLAVTINFLC 356 (532)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 356 (532)
.++. . + + ...++++ ..+.++ ...... .+..++++.++...+..++.....
T Consensus 224 ~~~~------~---~-----~----~~~~~~~---~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 274 (467)
T PRK09556 224 AEEI------F---G-----E----PISEEDK---ETESTD--------MTKWQIFVEYVLKNPVIWLLCFANIFLYIVR 274 (467)
T ss_pred hhhc------c---c-----C----ccchhhh---cccccc--------CcHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 0000 0 0 0 0000000 000000 000001 123677877665555444444333
Q ss_pred HHHHHHhhhcc-ccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 009563 357 SVVYYGISLNV-VNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVR 432 (532)
Q Consensus 357 ~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (532)
....+..+.++ ...+.+. ........++.+++.++.|+++||++||+.+.....+..++..++......... ..
T Consensus 275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 352 (467)
T PRK09556 275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEY--MY 352 (467)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHH--HH
Confidence 22333334333 3333332 233444556788999999999999999887665544433333222222222221 23
Q ss_pred HHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHH-HHHHHHHHH----H-------------hhhhhHHH
Q 009563 433 MICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQL-GAILAPFVV----V-------------LGGWLPFA 494 (532)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~----~-------------~~~~~~~~ 494 (532)
.+..++.++..............|.+|++.+|++.|+.+..+++ |++++|.+. . .++...|+
T Consensus 353 ~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~ 432 (467)
T PRK09556 353 LASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFA 432 (467)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHH
Confidence 33344444333333333345667999999999999999999986 667887776 2 23566777
Q ss_pred HHHHHHHHHHHHHhhc
Q 009563 495 VFAACGIIGGLFAFYL 510 (532)
Q Consensus 495 ~~~~~~~~~~~~~~~l 510 (532)
+++++.+++.++.+++
T Consensus 433 ~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 433 ALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776665544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=274.96 Aligned_cols=379 Identities=17% Similarity=0.131 Sum_probs=245.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHH
Q 009563 50 GPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKV 129 (532)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~ 129 (532)
+++++..+..++++++++++|...+++. . |.+.++++....+..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~--------------------------~~l~~~~~~~~~~~~~~ 62 (432)
T PRK10406 17 TRRRIWAIVGASSGNLVEWFDFYVYSFC--------S--------------------------LYFAHIFFPSGNTTTQL 62 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhCCCCCchHHH
Confidence 3445667777888999999999999888 5 88888885211144444
Q ss_pred HH---HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHH--------HHHHHHHHHHhhcccc
Q 009563 130 GL---VQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYS--------TYVVLRMLTGFSTGGV 198 (532)
Q Consensus 130 ~~---~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~ 198 (532)
+. +.+..+++..++++++|+++|| +|||+++.++.++++++++++++++++. .+++.|+++|++.|..
T Consensus 63 ~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~ 141 (432)
T PRK10406 63 LQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGE 141 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 43 4455555666999999999999 9999999999999999999999998864 5899999999999999
Q ss_pred chhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh----------h-chHHHHHHHHHHHHHHHHHHhccccc
Q 009563 199 GLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF----------Q-TWRALYIASSIPSILFLLIILPFLPE 267 (532)
Q Consensus 199 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----------~-~wr~~f~~~~~~~~~~~~~~~~~~~e 267 (532)
.+...+++.|++|+++|+++.++...+...|.++++.+...+ . |||++|++.+++.++.. .....+||
T Consensus 142 ~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e 220 (432)
T PRK10406 142 YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDE 220 (432)
T ss_pred HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCC
Confidence 999999999999999999999999888888888877654432 2 89999999888777654 45556777
Q ss_pred CchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHH
Q 009563 268 SPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLF 347 (532)
Q Consensus 268 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (532)
+|++.. ++ . +...+++++++++..+...+
T Consensus 221 ~~~~~~--------~~-------~------------------------------------~~~~~~~~l~~~~~~~~~~~ 249 (432)
T PRK10406 221 TSQQET--------RA-------L------------------------------------KEAGSLKGLWRNRRAFIMVL 249 (432)
T ss_pred CchHHH--------hh-------h------------------------------------cccccHHHHHhhHHHHHHHH
Confidence 653200 00 0 00113556677665443322
Q ss_pred HHHHH-HHHH-HHHHHHhhhccccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHh-
Q 009563 348 LAVTI-NFLC-SVVYYGISLNVVNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSL- 421 (532)
Q Consensus 348 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~- 421 (532)
..... .... ....|...+..+..+.+. ........+...++..+.|+++||++||+.+.....+..+....+..
T Consensus 250 ~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 329 (432)
T PRK10406 250 GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA 329 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1111 222222222222233222 22233334455677788899999999998877665544333322221
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHH-HHHHHHHHH----Hhh-hhhHHHH
Q 009563 422 VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQL-GAILAPFVV----VLG-GWLPFAV 495 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~----~~~-~~~~~~~ 495 (532)
........ ..+....+..+..+...+..+.+..|.+|++.|+++.|+.+..+++ ++...|.+. ..+ +...+++
T Consensus 330 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~ 408 (432)
T PRK10406 330 LQNVSSPY-AAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWY 408 (432)
T ss_pred HHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHH
Confidence 11111111 1222222222333344456678899999999999999999987664 233466544 233 3334555
Q ss_pred HHHHHHHHHHHHhhccCCCCCC
Q 009563 496 FAACGIIGGLFAFYLPETLNKP 517 (532)
Q Consensus 496 ~~~~~~~~~~~~~~l~~~~~~~ 517 (532)
.++..+++.+..+++ ++++|+
T Consensus 409 ~~~~~~i~~~~~~~l-~~~~~~ 429 (432)
T PRK10406 409 VTLMAVVAFLVSLML-HRKGKG 429 (432)
T ss_pred HHHHHHHHHHHHHHh-hhcccc
Confidence 555555555555544 334443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=286.45 Aligned_cols=390 Identities=24% Similarity=0.313 Sum_probs=258.5
Q ss_pred Cceeecccccc-----hhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc---chHHHH
Q 009563 113 SSTVTQWGLFC-----EEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS---PNYSTY 184 (532)
Q Consensus 113 ~~i~~~~~~~~-----~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l 184 (532)
|.+..+++... .+..+.+++.+++.++..++++++|+++|| +|||++++++.+++.++.+++.+. .+++.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (481)
T TIGR00879 52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFALSVEML 130 (481)
T ss_pred hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 56666666510 038999999999999999999999999999 999999999999999999998554 456689
Q ss_pred HHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHH---HHhh---chHHHHHHHHHHHHHHH
Q 009563 185 VVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIA---YIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 185 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~---~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
+++|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++ .... +||+.|++.++..++..
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~ 210 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF 210 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 5543 99999999766665554
Q ss_pred HHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhc
Q 009563 259 LIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIK 338 (532)
Q Consensus 259 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (532)
+..+++||+|++...+++.++..+..++....+. .+. . . .+........ ...+.+ ..+..+++.++
T Consensus 211 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~-~-~~~~~~~~~~----~~~~~~---~~~~~~~~~~~ 276 (481)
T TIGR00879 211 -LGLFFLPESPRWLVGKGRVEEARKSLARLRGTSG---EDK-E-L-LDELELIDIK----RSIEKR---SVQPSWGSLFS 276 (481)
T ss_pred -HHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCC---CcH-H-H-HHHHHHHHHH----HHHHHh---hccccHHHHHh
Confidence 6677889999887766666554443333211110 000 0 0 0000000000 000000 00111222222
Q ss_pred Ch--HHHHHHHHHHHHHHHH----HHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 009563 339 SP--LTRIRLFLAVTINFLC----SVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTL 409 (532)
Q Consensus 339 ~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~ 409 (532)
.. ..+..++...+..+.. ....+..+......+.+ .........++.+++.++.+++.||++||+.+..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 356 (481)
T TIGR00879 277 STRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGA 356 (481)
T ss_pred cCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 11 1122222222222221 12223333333333322 234445556777889999999999999999998888
Q ss_pred HHHHHHHHHHHhh---hccc----hhHHHHHHHHHHHHHHHH-hhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHH
Q 009563 410 WFSGFFCLLGSLV---KNNG----IWKIVRMICGVMGIFGVA-GTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILA 481 (532)
Q Consensus 410 ~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~ 481 (532)
.+.+++++++.+. .... ... ..+....+...+.+ ...+....+..|.+|++.|+++.|+.+...++|++++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~ 435 (481)
T TIGR00879 357 AGMAICLFVLGILGASFVTGSSKSSGN-VAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIV 435 (481)
T ss_pred HHHHHHHHHHHHHhhcccCCcccchhH-HHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777666532 1111 011 22222222222222 3346667788999999999999999999999999999
Q ss_pred HHHH-----HhhhhhHHHHHHHHHHHHHHHH-hhccCCCCCCh
Q 009563 482 PFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLPETLNKPL 518 (532)
Q Consensus 482 p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 518 (532)
|.+. ..++...|++.+++++++.++. ++.||+++++.
T Consensus 436 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 436 GFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 8876 3356677888888877776665 45677776654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=274.26 Aligned_cols=371 Identities=20% Similarity=0.228 Sum_probs=271.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHH
Q 009563 50 GPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKV 129 (532)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~ 129 (532)
.+++|.++.++++..+.+++|....+.. . |.+.+++|+ ++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~~~~~~~~---s~~~~ 52 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVA--------A--------------------------PRMAQEFGL---DVAQM 52 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhCC---CHHHH
Confidence 4688999999999999999998888877 5 899999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecc
Q 009563 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEP 209 (532)
Q Consensus 130 ~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 209 (532)
+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.++++++++++.+++.|++.|++.+...+...+++.|+
T Consensus 53 g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 131 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEA 131 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHH
Q 009563 210 VGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMR 286 (532)
Q Consensus 210 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 286 (532)
+|+++|++++++...+..+|..+++.++..+. +||+.|++.++..++..++..+++||+|++...+.+.++.++
T Consensus 132 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--- 208 (406)
T PRK11551 132 VGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP--- 208 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh---
Confidence 99999999999999999999999999887665 899999998877776665666778888753211110000000
Q ss_pred HHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcCh---HHHHHHHHHHHHHHHHHHHHHHh
Q 009563 287 AIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSP---LTRIRLFLAVTINFLCSVVYYGI 363 (532)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 363 (532)
..+..++++ ..+......+.............
T Consensus 209 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (406)
T PRK11551 209 ---------------------------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWL 243 (406)
T ss_pred ---------------------------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111111 11111111111111111112222
Q ss_pred hhccccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 009563 364 SLNVVNLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGI 440 (532)
Q Consensus 364 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (532)
+.+..+.+. ..........++.+++.++.+++.||++||+.+..+.....++.+.+....+ .+ ...+..++.+
T Consensus 244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~g 319 (406)
T PRK11551 244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS--FA--GMLLAGFAAG 319 (406)
T ss_pred HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc--HH--HHHHHHHHHH
Confidence 333333332 2334445556778899999999999999999888766666665555544332 21 3344556667
Q ss_pred HHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHH--h----hhhhHHHHHHHHHHHHHHHHhhc
Q 009563 441 FGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVV--L----GGWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~--~----~~~~~~~~~~~~~~~~~~~~~~l 510 (532)
++.....+...++..|.+|++.|+++.|+.+....+|..++|.+.. . ++...++....+.+++.++.+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888899999999999999999999999999999999881 1 12333444444444444444444
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=269.90 Aligned_cols=336 Identities=14% Similarity=0.076 Sum_probs=248.5
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+|+|+ |..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++++++++++|++.+++.|+++|
T Consensus 33 ~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G 108 (390)
T PRK03545 33 SDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIA 108 (390)
T ss_pred HHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 899999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+...+++.|++|+++|++++++...+.++|..+++.+++.+. +||+.|++.+++.++..++.+..+||.|
T Consensus 109 ~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 109 FAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999989999999999999999999999999999999999999998775 9999999999888777655555666643
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+. ++ + ..++.++.++++.++......
T Consensus 189 ~~----~~-~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 214 (390)
T PRK03545 189 SE----HS-G-------------------------------------------------SLKSLPLLFRRPALVSLYLLT 214 (390)
T ss_pred CC----Cc-c-------------------------------------------------hHHHHHHHHhCcHHHHHHHHH
Confidence 20 00 0 001234567777665444333
Q ss_pred HHHHHHHH-HHHHHhhhccccCc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhcc
Q 009563 350 VTINFLCS-VVYYGISLNVVNLQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNN 425 (532)
Q Consensus 350 ~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 425 (532)
+....... ...+..++.....+ ..........+++.+++.++.+++.||++||... .+..+..+....+......
T Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~ 293 (390)
T PRK03545 215 VVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANS 293 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhch
Confidence 33222222 22222333222222 2233444556678889999999999999987654 4444444443333222222
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHH
Q 009563 426 GIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACG 500 (532)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~ 500 (532)
.+ ...+..++.+++.....+.....+.+..| +.|+++.|+.+...++|..+||.+. ..+....+...+.+.
T Consensus 294 -~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~ 369 (390)
T PRK03545 294 -EW--HLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALA 369 (390)
T ss_pred -HH--HHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 11 34455666677666656666677778776 5789999999999899888888887 455677788888777
Q ss_pred HHHHHHHhhcc
Q 009563 501 IIGGLFAFYLP 511 (532)
Q Consensus 501 ~~~~~~~~~l~ 511 (532)
+++.++.....
T Consensus 370 ~~~~~~~~~~~ 380 (390)
T PRK03545 370 LAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHc
Confidence 77766654443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=271.44 Aligned_cols=387 Identities=18% Similarity=0.108 Sum_probs=261.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVG 130 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~ 130 (532)
++++.++..+.++++...++....+.. . |.+.+++|+ |..+.|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~~~~~~g~---s~~~~g 61 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAA--------M--------------------------PEMLADLGL---SRSDIG 61 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHh--------h--------------------------HHHHHhcCC---CHHHHH
Confidence 566777777888888888887776666 4 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeeccc
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPV 210 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 210 (532)
++.+.+.+++.+++++.|++.|| +|||+++.++.++.++++++++++++++.+++.|++.|++.|...+...+++.|++
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~ 140 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWY 140 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhC
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHH
Q 009563 211 GPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRA 287 (532)
Q Consensus 211 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 287 (532)
|+++|++++++.+.+.++|..+++.+++.+. +||+.|++.+++.++..++.++++||+|++...+...+..
T Consensus 141 ~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~------ 214 (434)
T PRK11663 141 SRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR------ 214 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc------
Confidence 9999999999999999999999999888776 9999999988887766656666778876432100000000
Q ss_pred HHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccch-hhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009563 288 IAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSV-IDVIKSPLTRIRLFLAVTINFLCSVVYYGISLN 366 (532)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (532)
++.++...+... ...+.+..+ ...++++..+....................+.+
T Consensus 215 -----------------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 269 (434)
T PRK11663 215 -----------------HDALELAQQQEG--------AGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLY 269 (434)
T ss_pred -----------------ccccccchhccc--------cCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 000000011 124566655544333333333222222223333
Q ss_pred c-ccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhh--CCchhH-HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 009563 367 V-VNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKL--GRKPMT-IGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMG 439 (532)
Q Consensus 367 ~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~--gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (532)
+ ...+.+ .........++.+++.++.|++.||+ ++|+.. ........+....+......... ......+..
T Consensus 270 l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 347 (434)
T PRK11663 270 MSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYV--MQAACFFTI 347 (434)
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHH--HHHHHHHHH
Confidence 3 333332 23334455677889999999999998 333332 22221222222222222222211 122222223
Q ss_pred HHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHh
Q 009563 440 IFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAF 508 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
+++.............|.+|++.|+++.|+.++..++|++++|.+. ..++...|++.+++.+++++..+
T Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 348 GFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3322222233445678999999999999999999999999998777 45677788888888777666554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=272.71 Aligned_cols=356 Identities=16% Similarity=0.210 Sum_probs=253.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
+.+++|+..+..++++++.++++.....+. . |.+.+++|+ |+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~i~~~~~~---s~~ 53 (426)
T PRK12307 11 EITRPQKNALFSAWLGYVFDGFDFMLIFYI--------M--------------------------YLIKADLGL---TDM 53 (426)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhHHHHHHHH--------H--------------------------HHHHHHhCC---CHH
Confidence 345788888899999999999998888777 5 899999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheee
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
+.+++.+++.+++.+++++.|+++|| +|||+++.++.++.++++++++++++++.++++|+++|++.+...+....++.
T Consensus 54 ~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~ 132 (426)
T PRK12307 54 EGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAV 132 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHH
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKI 284 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~ 284 (532)
|++|+++|+++.++...+..+|.++++.+.+.+. +||+.|++..+..++.. ......||++++...+
T Consensus 133 ~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~-~~~~~~p~~~~~~~~~--------- 202 (426)
T PRK12307 133 ESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVI-YIRARAPESKEWEEAK--------- 202 (426)
T ss_pred HhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH-HHHHHCCCChHHHHhh---------
Confidence 9999999999999999999999999998887765 99999988654433322 2222344443211000
Q ss_pred HHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHH---HHHHH
Q 009563 285 MRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLC---SVVYY 361 (532)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 361 (532)
.+.++ + ..++. .+.....++++++++.++............. .....
T Consensus 203 ------~~~~~-----------~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (426)
T PRK12307 203 ------LSGKG-----------K------HSQSA-------WSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFG 252 (426)
T ss_pred ------hhccc-----------c------ccccc-------hhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 00000 0001124566777776554333222211111 11122
Q ss_pred HhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 009563 362 GISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVM 438 (532)
Q Consensus 362 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (532)
..+.+....+.+ .........++.+++.++.+++.||++||+.+..+.++..+..+.+........ ..+...+
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 328 (426)
T PRK12307 253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNY----LLLGACL 328 (426)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccH----HHHHHHH
Confidence 233333333332 223334556778889999999999999999888887776666554443332221 1122222
Q ss_pred HHH--HHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 439 GIF--GVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 439 ~~~--~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.+. ...+..+....++.|.+|++.|+++.|+.+....+++.++|.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~ 377 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAA 377 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHH
Confidence 222 22233345667788999999999999999999999999999887
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=268.41 Aligned_cols=376 Identities=18% Similarity=0.214 Sum_probs=250.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCC-ceeecc--cccchhhhH
Q 009563 52 WQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGS-STVTQW--GLFCEEKYK 128 (532)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~--~~~~~s~~~ 128 (532)
++++.+...+++++++.+|....++. . | .+.+++ ++ ++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~--------~--------------------------~~~~~~~~~~~~---~~~- 60 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGIT--------A--------------------------ALVFNREFFPQV---SPA- 60 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhcCCCC---CcH-
Confidence 45667788888999999999988876 2 3 244444 45 444
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHH--------HHHHHHHHHHhhc
Q 009563 129 VGLVQ-----ALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYS--------TYVVLRMLTGFST 195 (532)
Q Consensus 129 ~~~~~-----s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~ 195 (532)
.+++. ++.+++..+++++.|+++|| +|||+++.++.++++++++++++++++. .+++.|+++|++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~ 139 (438)
T PRK09952 61 MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAV 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34443 35567788999999999999 9999999999999999999999999987 5889999999999
Q ss_pred cccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh----------h-chHHHHHHHHHHHHHHHHHHhcc
Q 009563 196 GGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF----------Q-TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----------~-~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
|...+....++.|++|+++|++..+....+..+|.+++..+...+ . +||+.|++.+++.++.. .....
T Consensus 140 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l~~~ 218 (438)
T PRK09952 140 GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WVRNG 218 (438)
T ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH-HHHHh
Confidence 999999999999999999999999999999999998887665432 1 89999999887765533 44556
Q ss_pred cccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHH
Q 009563 265 LPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRI 344 (532)
Q Consensus 265 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (532)
.||+|++...+++.++. + ......+.+++++..+.
T Consensus 219 ~~es~~~~~~~~~~~~~----------------------------------~-----------~~~~~~~~l~~~~~~~~ 253 (438)
T PRK09952 219 MEESAEFEQQQHEQAAA----------------------------------K-----------KRIPVIEALLRHPGAFL 253 (438)
T ss_pred CCCChhHHHHHhhcccc----------------------------------c-----------ccCCHHHHHHHchHHHH
Confidence 77877542111000000 0 00001112344444333
Q ss_pred HHHHHHHH-HHHHH-HHHHHhhhccccCcchHH---HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 009563 345 RLFLAVTI-NFLCS-VVYYGISLNVVNLQTNLY---LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLG 419 (532)
Q Consensus 345 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~ 419 (532)
........ .+... ...+...+.....+.+.. ......++..+++.++.|+++||++||+.+..+.++..++.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~ 333 (438)
T PRK09952 254 KIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPF 333 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 32211111 11111 112222222222222221 22333455567788899999999999998887766655544333
Q ss_pred Hhhh-ccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHH-HHHHHHHHHH----H-hh--hh
Q 009563 420 SLVK-NNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQ-LGAILAPFVV----V-LG--GW 490 (532)
Q Consensus 420 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~i~p~~~----~-~~--~~ 490 (532)
.... ...... ..++..++.+++.+...+..++++.|.+|++.|+++.|+.+.... +|+.++|.+. . .+ +.
T Consensus 334 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~ 412 (438)
T PRK09952 334 FMALEAQSIFW-IVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWH 412 (438)
T ss_pred HHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 3221 212111 233344555667677778888999999999999999999776654 7888888777 1 11 34
Q ss_pred hHHHHHHHHHHHHHHHHhhccCC
Q 009563 491 LPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
..+...+++.+++.+..+.++|+
T Consensus 413 ~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 413 SVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 55666666677776666666654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=269.14 Aligned_cols=399 Identities=16% Similarity=0.113 Sum_probs=259.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHH
Q 009563 50 GPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKV 129 (532)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~ 129 (532)
.+++|.++..+++.......+....++. . |.+.++ |+ +..+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------p~l~~~-g~---s~~~~ 65 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALA--------M--------------------------PYLVEQ-GF---SRGDL 65 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--------h--------------------------HHHHHc-CC---CHHHH
Confidence 3556777776777777767776655555 3 777877 99 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc----hHHHHHHHHHHHHhhccccchhhhhe
Q 009563 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP----NYSTYVVLRMLTGFSTGGVGLCAFVL 205 (532)
Q Consensus 130 ~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~ 205 (532)
+++.+.+.++++++++++|+++|| +|||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+.....
T Consensus 66 g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~ 144 (452)
T PRK11273 66 GFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 144 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHH
Confidence 999999999999999999999999 9999999999999999999888763 78889999999999999988888888
Q ss_pred eecccCCCchhHHHHHHHHHHHHHHH-HHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHH
Q 009563 206 ATEPVGPSKRGAAGMSTFYFFSTGIA-LLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEA 281 (532)
Q Consensus 206 i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~ 281 (532)
+.|++|+++|++++++...+.++|.. .+++++..+. +||+.|++.+++.++..++..+++||+|+....+++ ++.
T Consensus 145 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 223 (452)
T PRK11273 145 MVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEY 223 (452)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhh
Confidence 89999999999999999999998864 4555433322 999999999888887776777888888753211110 000
Q ss_pred HHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccc-hhhhhcChHHHHHHHHHHHHHHHHHHHH
Q 009563 282 MKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGS-VIDVIKSPLTRIRLFLAVTINFLCSVVY 360 (532)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (532)
+ ++ .++ +. ..++.+ +.+.+.. .+.+++++.++...+...+.........
T Consensus 224 ~-------~~----~~~----------~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 273 (452)
T PRK11273 224 K-------ND----YPD----------DY-NEKHEQ--------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGIL 273 (452)
T ss_pred h-------hc----ccc----------cc-ccccCC--------CccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 000 00 000000 0000011 1235677776665555545444433333
Q ss_pred HHhhhcccc-Ccch---HHHHHHHHHHHHHHHHHHHHHHHhhh--CCchhH-HHHHHHHHHHHHHHHhhhccchhHHHHH
Q 009563 361 YGISLNVVN-LQTN---LYLNVLVNAVAEMPAFTITAVLLDKL--GRKPMT-IGTLWFSGFFCLLGSLVKNNGIWKIVRM 433 (532)
Q Consensus 361 ~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~--gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (532)
...|.++.+ .+.+ .........++.+++.++.|+++||+ +||... .....+..++.+.+......... ...
T Consensus 274 ~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~ 351 (452)
T PRK11273 274 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPT--VDM 351 (452)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChH--HHH
Confidence 344444433 2322 23334455567778999999999998 444432 22223333333332222222221 222
Q ss_pred HHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHH-HHHHH-----HhhhhhHHHHHHHHHHHHHHHH
Q 009563 434 ICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAIL-APFVV-----VLGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i-~p~~~-----~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
+..+..+............+..|.+|++.||++.|+.+....+|+.+ +|.+. ..++...|++.++++++++++.
T Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33333333332323334456779999999999999999988887654 67665 4567778888888777777766
Q ss_pred hhccCCCCCChhh
Q 009563 508 FYLPETLNKPLYD 520 (532)
Q Consensus 508 ~~l~~~~~~~~~~ 520 (532)
.++....+|+.||
T Consensus 432 ~~~~~~~~~~~~~ 444 (452)
T PRK11273 432 IVVMIGEKRHHEE 444 (452)
T ss_pred HHHhccccchHHH
Confidence 5554443444333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=270.35 Aligned_cols=392 Identities=13% Similarity=0.018 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHHHH
Q 009563 53 QLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLV 132 (532)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~ 132 (532)
+|..+..++++.++...|..+.+.. . |++.+|+|. +..+.+|+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a--------~--------------------------p~i~~~l~~---s~~~~~~~ 46 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA--------A--------------------------PTLSMTLGA---SGNELLWI 46 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhCC---CHhHHHHH
Confidence 5778899999999999999988887 5 999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeeccc-C
Q 009563 133 QALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPV-G 211 (532)
Q Consensus 133 ~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~ 211 (532)
.+.|.++..++.+++|+++|| +|||+++.++.+++.++++++++++|++.++++|+++|+|.+...+.....+.+++ |
T Consensus 47 ~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~ 125 (495)
T PRK14995 47 IDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTE 125 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999 99999999999999999999999999999999999999999998888888787765 6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHH----
Q 009563 212 PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKI---- 284 (532)
Q Consensus 212 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~---- 284 (532)
+++|++++++......+|..+||.+++.+. +|||.|++...+.++..++..+++|+.|+....+.+.......
T Consensus 126 ~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~ 205 (495)
T PRK14995 126 EKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAI 205 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHH
Confidence 789999999999999999999999999987 9999999998888777767777788765321111111111000
Q ss_pred HHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 285 MRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGIS 364 (532)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (532)
........................-.. ...-..-...+.+...+.-..++++++.+....+..+..........+..+
T Consensus 206 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (495)
T PRK14995 206 LLLVYSAKTALKGFLSLWVTSLTLLTG--ALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMA 283 (495)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHH--HHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000000000000000 000000000000011111224678888766555544444444333333444
Q ss_pred hcccc-Ccc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 009563 365 LNVVN-LQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGI 440 (532)
Q Consensus 365 ~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (532)
.+++. .+. ..........++..++.++.|++.||+|+|+.+..+.++..++...+.........+ ......++.+
T Consensus 284 ~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~G 362 (495)
T PRK14995 284 QELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQW-QAWGLMALLG 362 (495)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHH
Confidence 44332 222 334445556677888999999999999999988888887777766655443222222 3455677788
Q ss_pred HHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 441 FGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
++.+...+.....+.+..|++.++.+.++.++...+|+.+|+.+.
T Consensus 363 ~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 363 FSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred HhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888999999999999999999999999888776
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=262.56 Aligned_cols=426 Identities=20% Similarity=0.310 Sum_probs=301.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
...|++...+.+...+.+.+++|.++++.. . .+.. +.|-+ .....=++ .+.
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lV--------t------------~il~--~lY~~----~~~~~g~~---ps~ 84 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLV--------T------------KILG--YLYYH----GDESGGHY---PSG 84 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHH--------H------------HHHH--HHhcC----CCCCCCcC---Cch
Confidence 456788888888899999999999888877 1 0000 00000 00011123 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc-------hHHHHHHHHHHHHhhccccch
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP-------NYSTYVVLRMLTGFSTGGVGL 200 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~ 200 (532)
..+.+..+..+|.++||++.|+++|| +|||+++...+++..+++++++++. -..++.+.|++.|+|.|+-+|
T Consensus 85 i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYP 163 (538)
T KOG0252|consen 85 VLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYP 163 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCc
Confidence 78889999999999999999999999 9999999999999999999888763 257899999999999999999
Q ss_pred hhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh------------------chHHHHHHHHHHHHHHHHHHh
Q 009563 201 CAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ------------------TWRALYIASSIPSILFLLIIL 262 (532)
Q Consensus 201 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~------------------~wr~~f~~~~~~~~~~~~~~~ 262 (532)
.+.++.+|...++.||...+...+..++|.+.|.+++..+. =||..|.+..+++++.. ...
T Consensus 164 lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l-y~R 242 (538)
T KOG0252|consen 164 LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL-YFR 242 (538)
T ss_pred chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 99999999999999999999888888888877777665543 49999999999988877 788
Q ss_pred cccccCchhHhhcC-CHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChH
Q 009563 263 PFLPESPRWYLVRG-KLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPL 341 (532)
Q Consensus 263 ~~~~esp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (532)
+.+|||+++-.... +.+.+. ++..+..+.+.+. ++.. .......+.....+...+..+
T Consensus 243 l~M~Et~~Y~al~~~~~~~a~-------~d~~k~~~~~~~~----~~~~---------~~~~~~~~~~~~~F~~~f~~~- 301 (538)
T KOG0252|consen 243 LKMPETARYTALVSKKLKQAA-------GDMKKVLSVDIEA----ESTA---------ESDVPPPSNSFGLFSRLFLRW- 301 (538)
T ss_pred hcCCcchhHHHHhhcCHhhhh-------hccccccccccch----hhcc---------ccCCCCcccccchHHHHHHHH-
Confidence 89999998753222 212211 1111111110000 0000 000000111112233344333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCc--------chHH--------HHHHHHHHHHHHHHHHHHHHHhhhCCchhH
Q 009563 342 TRIRLFLAVTINFLCSVVYYGISLNVVNLQ--------TNLY--------LNVLVNAVAEMPAFTITAVLLDKLGRKPMT 405 (532)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~ 405 (532)
.-+.++.....|+...+.+|...++....- .+.+ ...++...+.++|..+..+++|++|||+..
T Consensus 302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq 381 (538)
T KOG0252|consen 302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH
Confidence 335677778888888888877766543321 1111 122333345566888888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccchh-HHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 009563 406 IGTLWFSGFFCLLGSLVKNNGIW-KIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFV 484 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~ 484 (532)
+.+++++.+..+.+....++... ....+...+...++..+.......+.+|.+|.+.|++..|+....+.+|++++...
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~ 461 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFG 461 (538)
T ss_pred HhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHH
Confidence 99999999999998887662111 10222233333445556666888999999999999999999999999999998877
Q ss_pred H----------HhhhhhHHHHHHHHHHHHHHHHhhccCCCCCChhhhHHhh
Q 009563 485 V----------VLGGWLPFAVFAACGIIGGLFAFYLPETLNKPLYDTMAGM 525 (532)
Q Consensus 485 ~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 525 (532)
+ ..+....+++++++.+++.++.+++||+++|+++|..++.
T Consensus 462 F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 462 FLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEE 512 (538)
T ss_pred hhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChh
Confidence 6 2346778999999999999999999999999998875443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=263.01 Aligned_cols=367 Identities=19% Similarity=0.245 Sum_probs=255.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
..++++|+.+..++++++.++++....+.. . |.+++++|+ +..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~l~~~~~~---s~~ 47 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALV--------L--------------------------AEVAGEFGL---TTV 47 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhCC---Chh
Confidence 356789999999999999999999888887 5 899999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheee
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
+.+++.+++.++..+++++.|.++|| +|||+++.++.++.++++++++++++++.+++.|++.|++.+...+...+++.
T Consensus 48 ~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~ 126 (405)
T TIGR00891 48 DAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVI 126 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---c--hHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHH
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---T--WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAM 282 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~--wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 282 (532)
|++|+++|+++.++...+..+|..+++.+++.+. + ||+.|++.+++.++.. +....+||++++...+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 205 (405)
T TIGR00891 127 ESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVR 205 (405)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhh
Confidence 9999999999999999999999999999888765 4 9999998766665544 55667788765432211111111
Q ss_pred HHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHH----HHHHHHHH
Q 009563 283 KIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAV----TINFLCSV 358 (532)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 358 (532)
+..++..+. + +. .++..+ ......++..+. .+..+.... +.......
T Consensus 206 ~~~~~~~~~--~------------~~------~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 256 (405)
T TIGR00891 206 TMVDILYGG--E------------HR------IANIVM-------TLAAAMVQSAGK--RWPTFVYLVVLVLFANLYSHP 256 (405)
T ss_pred hHHHHHhcc--c------------hh------hhhhhh-------hhhHHhhhhhhh--hhHHHHHHHHHHHHHHHHHhh
Confidence 101000000 0 00 000000 000001111111 111111111 11111111
Q ss_pred HHHHhhhcc-ccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 009563 359 VYYGISLNV-VNLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMI 434 (532)
Q Consensus 359 ~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (532)
.....+.+. ...+. ..........++.+++.++.+++.||++||+.+..+..+..+..+...... ...+ ...+
T Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~ 333 (405)
T TIGR00891 257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG-ANVA--VLGL 333 (405)
T ss_pred hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC-CchH--HHHH
Confidence 111122222 22222 223334556677889999999999999999988877765543333222222 2211 2333
Q ss_pred HHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 435 CGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
..++.++......+....++.|.+|++.|+++.|+.+....+|+.++|.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~ 384 (405)
T TIGR00891 334 GLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG 384 (405)
T ss_pred HHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 334455555566677788899999999999999999999999999999887
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-31 Score=257.00 Aligned_cols=341 Identities=12% Similarity=0.057 Sum_probs=241.7
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+++|+|+ |..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.++++++++++.++++|+++|
T Consensus 33 p~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~G 108 (393)
T PRK09705 33 PQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGG 108 (393)
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence 899999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhccc-cc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFL-PE 267 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~-~e 267 (532)
++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+. +||+.+.+.++..++.. +.++.. ++
T Consensus 109 ig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~ 186 (393)
T PRK09705 109 VGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL-FAWWWQSAR 186 (393)
T ss_pred hHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHhcC
Confidence 9999999999999999987 78999999999999999999988887764 79998877666554433 222222 11
Q ss_pred CchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHH
Q 009563 268 SPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLF 347 (532)
Q Consensus 268 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (532)
.|+ ++ + ++ +...++.++++..+...+
T Consensus 187 ~~~-----~~------------------------------~-------~~------------~~~~~~~l~~~~~~~l~~ 212 (393)
T PRK09705 187 EVA-----SS------------------------------H-------KT------------TTTPVRVVFTPRAWTLGV 212 (393)
T ss_pred CCc-----cc------------------------------c-------CC------------CcCCcccccCHhHHHHHH
Confidence 110 00 0 00 001122334554443333
Q ss_pred HHHHHHHHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhc
Q 009563 348 LAVTINFLCSVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKN 424 (532)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~ 424 (532)
...+............+.+..+.+.+ ........+++.+++.++.+++.||++||+.+..+..+..++..++...+.
T Consensus 213 ~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (393)
T PRK09705 213 YFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL 292 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc
Confidence 33222222222222223333333322 334455667788899999999999999999888887777766665543333
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHhhhcccccc-chhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh-hhhHHHHHH
Q 009563 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFP-TVVRNAALGCATQAAQLGAILAPFVV-----VLG-GWLPFAVFA 497 (532)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~-~~~~~~~~~ 497 (532)
... . ....+.+++.+..++.......+..+ ++.+++..|+.+....+++.++|.+. ..| +...|.+.+
T Consensus 293 ~~~---~--~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~ 367 (393)
T PRK09705 293 QLP---V--LWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHA 367 (393)
T ss_pred hHH---H--HHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 211 1 12234566666777766666667664 67899999999999999999999887 333 455566666
Q ss_pred HHHHHHHHHH-hhccCCCCCCh
Q 009563 498 ACGIIGGLFA-FYLPETLNKPL 518 (532)
Q Consensus 498 ~~~~~~~~~~-~~l~~~~~~~~ 518 (532)
++.++..+.. .+.||+++|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 368 LCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHhccccccchh
Confidence 6665555443 45577665543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=264.51 Aligned_cols=337 Identities=15% Similarity=0.091 Sum_probs=246.8
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|+ |..+.|++.+++.+++.++++++|+++|| +|||+++..+.++.+++.++++++++++.+++.|++.|
T Consensus 27 ~~~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 102 (377)
T TIGR00890 27 PPLGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLAS 102 (377)
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+.....+.+++| ++|+++.++...+.++|..+++.+.+.+. +||+.|++.+++.++..+..+++++++|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (377)
T TIGR00890 103 AGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPP 181 (377)
T ss_pred HHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence 9999888888888889886 67999999999999999887655554443 8999999999988887766666666644
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+... + ++ + +.+ ......++.++++..+......
T Consensus 182 ~~~~---~----------------~~--~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~ 214 (377)
T TIGR00890 182 GQLI---K----------------TN--I----------------EVS----------VKDYTVWEMLRTPQFWVLYLSF 214 (377)
T ss_pred hhcc---c----------------cC--c----------------ccc----------hhhhhHHHHHcCccHHHHHHHH
Confidence 2100 0 00 0 000 0001234566666555433333
Q ss_pred HHHHHHHHHHHHHhhhccccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccc
Q 009563 350 VTINFLCSVVYYGISLNVVNLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNG 426 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (532)
+...+.........+.+.++.+. ..........++.+++.++.+++.||++||+.+..+..+..++.+.+...+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (377)
T TIGR00890 215 FLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN 294 (377)
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch
Confidence 32222221111111222222222 223344556677888999999999999999999888888887777666554332
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHH
Q 009563 427 IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGI 501 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~ 501 (532)
.. ..+...++.+++.+...+....+..|.+|+++|+++.|+.+....+|+.++|.+. ..++...|.+.+++.+
T Consensus 295 ~~--~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~ 372 (377)
T TIGR00890 295 DV--LFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFAL 372 (377)
T ss_pred hH--HHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 21 2333445556666666677778899999999999999999999999999999876 3456667777666655
Q ss_pred HH
Q 009563 502 IG 503 (532)
Q Consensus 502 ~~ 503 (532)
++
T Consensus 373 ~~ 374 (377)
T TIGR00890 373 TS 374 (377)
T ss_pred Hh
Confidence 54
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-31 Score=258.51 Aligned_cols=376 Identities=24% Similarity=0.352 Sum_probs=265.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
+..+++|+.+..+.+..+..+++.....+. . |.+.+++|. +..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~~~~~~~~---~~~ 52 (398)
T TIGR00895 10 PLSRYQWRAIILSFLIMLMDGYDLAAMGFA--------A--------------------------PAISAEWGL---DPV 52 (398)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhh--------H--------------------------HHHhhccCC---CHH
Confidence 345677888888888888888887766666 4 889999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheee
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
+.+++.+.+.++..++.++.|+++|| +|||+.+..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 131 (398)
T TIGR00895 53 QLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVS 131 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHH
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKI 284 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~ 284 (532)
|++|+++|+++.++...+..+|..+++.+++.+. +||+.|++.++..++..++.++++||++++...+ +.++..+.
T Consensus 132 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 210 (398)
T TIGR00895 132 EYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRI 210 (398)
T ss_pred HHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHH
Confidence 9999999999999999999999999999988876 9999999987777666667777889988765444 33333333
Q ss_pred HHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHH---HHHHHHHHHHHHH
Q 009563 285 MRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFL---AVTINFLCSVVYY 361 (532)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 361 (532)
.++....+..+..++ . .+ +.. ..+..+...+.+++++..+..... .............
T Consensus 211 ~~~~~~~~~~~~~~~----~---~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (398)
T TIGR00895 211 VNAIAPQMQAEAQSA----L---PE----QKA--------TQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTN 271 (398)
T ss_pred HHHHHHhcccccccc----c---cc----ccc--------ccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322111100000 0 00 000 000000112223333222211111 1111111111222
Q ss_pred HhhhccccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 009563 362 GISLNVVNLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVM 438 (532)
Q Consensus 362 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (532)
..+......+. ..........++.+++.++.+++.||++||+... ...+..+...++...... .+ ...+..++
T Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~ 347 (398)
T TIGR00895 272 WLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTLFS-PT--LLLLLGAI 347 (398)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHhhC-HH--HHHHHHHH
Confidence 22333333222 2333445556778899999999999999984443 333333333333332222 21 44566677
Q ss_pred HHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 439 GIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.+++.+...+...+++.|.+|++.|+++.|+.+....+|..++|.+.
T Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~ 394 (398)
T TIGR00895 348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394 (398)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888888899999999999999999999999999999999999875
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=265.17 Aligned_cols=378 Identities=12% Similarity=0.075 Sum_probs=251.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
++.+.+++.+...++..+...++....... . |.+.+|+|+ +..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~l~~~~gl---s~~ 71 (476)
T PLN00028 29 SFARPHMRAFHLSWISFFTCFVSTFAAAPL--------L--------------------------PIIRDNLNL---TKS 71 (476)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHcCC---CHH
Confidence 455566777777777777777766555554 3 889999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheee
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
+.+++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.++++++++++.+++.|++.|++.+... ....++.
T Consensus 72 ~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~ 149 (476)
T PLN00028 72 DIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMS 149 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence 99999999999999999999999999 999999999999999999999999999999999999999988654 4566789
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh------------hchHHHHHHHHHHHHHHHHHHhcccccCchhHhhc
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF------------QTWRALYIASSIPSILFLLIILPFLPESPRWYLVR 275 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l------------~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~ 275 (532)
|++|+++|++++++.....++|..+++.+...+ .|||+.|++.+++.++..++.+++.++.|+.
T Consensus 150 ~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~---- 225 (476)
T PLN00028 150 TMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG---- 225 (476)
T ss_pred HhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC----
Confidence 999999999999998877777776665544332 1799999999998887775555444444421
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHH
Q 009563 276 GKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFL 355 (532)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (532)
+.++.+ .+. +.+ +.+....+++.++++..+...+..+.....
T Consensus 226 -~~~~~~--------~~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (476)
T PLN00028 226 -NYRELK--------KSG--------------------TMP---------KDSFSKVLRYGVTNYRTWILALTYGYSFGV 267 (476)
T ss_pred -chhhHH--------hcC--------------------ccc---------cccHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 000000 000 000 000011345566776655433332222221
Q ss_pred HH-HHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCch-------hHHHHHHHHHHHHHHHHhhhc
Q 009563 356 CS-VVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKP-------MTIGTLWFSGFFCLLGSLVKN 424 (532)
Q Consensus 356 ~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~-------~~~~~~~~~~~~~~~~~~~~~ 424 (532)
.. ...+...+.....+.+ .........++.+++.++.|+++||++||+ .......+.++.++++....
T Consensus 268 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~- 346 (476)
T PLN00028 268 ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN- 346 (476)
T ss_pred HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc-
Confidence 11 1112222222222322 233444556778899999999999998652 22222222223222222222
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHH
Q 009563 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVVL----GGWLPFAVFAACG 500 (532)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~----~~~~~~~~~~~~~ 500 (532)
... ...+..++.+++.....+..+++..+..| +.++++.|+.+..+.+|++++|.+... ++...|++.+++.
T Consensus 347 -~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~ 422 (476)
T PLN00028 347 -SLG--AAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMI 422 (476)
T ss_pred -hHH--HHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHH
Confidence 111 23344455555555566666777777654 689999999999888999999988732 3667888888888
Q ss_pred HHHHHHHhhcc
Q 009563 501 IIGGLFAFYLP 511 (532)
Q Consensus 501 ~~~~~~~~~l~ 511 (532)
+++.++.++++
T Consensus 423 ~i~~~~~~~~~ 433 (476)
T PLN00028 423 IACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHhee
Confidence 88877776653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=315.45 Aligned_cols=380 Identities=29% Similarity=0.523 Sum_probs=273.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHhhccccchh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP---NYSTYVVLRMLTGFSTGGVGLC 201 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~ 201 (532)
+..+.+++.+...+|..+|+++.|.++|| +|||+.+.++.++..+++++.++++ +++.+.++|++.|++.|...+.
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~ 122 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVV 122 (451)
T ss_pred hHHHHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45678999999999999999999999999 9999999999999999999999999 9999999999999999999999
Q ss_pred hhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---c---hHHHHHHHHHHHHHHHHHHhcccccCchhHhhc
Q 009563 202 AFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---T---WRALYIASSIPSILFLLIILPFLPESPRWYLVR 275 (532)
Q Consensus 202 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~---wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~ 275 (532)
...++.|..|+++|++..++.+.+..+|..++..++..+. + ||+.+++.++++++.. +..+++||||+|+..+
T Consensus 123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~~~pESP~wL~~~ 201 (451)
T PF00083_consen 123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRFFLPESPRWLLSK 201 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccceeccc
Confidence 9999999999999999999999999999998888765543 4 9999999999988766 6778999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHH
Q 009563 276 GKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFL 355 (532)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (532)
+|.+++++.++++++.+..+ ++.....++.+ +.++.+..++++++++..++...........
T Consensus 202 ~~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 263 (451)
T PF00083_consen 202 GRDEEAEKVLRKLRGKEIED--EEIEEIKAEKK----------------ESQESKASWRDLFRNKKYRKRLLIALLLQFF 263 (451)
T ss_pred cccccccccccccccccccc--ccccccccccc----------------cccccceeeeecccccccccccccccccccc
Confidence 99999998887753221100 00000000000 0000013556666665433333333333322
Q ss_pred H-----HHHHHHhhhccccCcchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH--h-hhccc
Q 009563 356 C-----SVVYYGISLNVVNLQTNL-YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGS--L-VKNNG 426 (532)
Q Consensus 356 ~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~--~-~~~~~ 426 (532)
. ....+..+......+.+. ........+..+++.+++.++.||+|||++++.+..+++++.+.+. . .....
T Consensus 264 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~ 343 (451)
T PF00083_consen 264 QQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSS 343 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 112222232333322222 2333445566777888888999999999999999888888877775 1 11111
Q ss_pred h--hHHHHHHHHHHHHHHHH-hhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHH
Q 009563 427 I--WKIVRMICGVMGIFGVA-GTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAA 498 (532)
Q Consensus 427 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~ 498 (532)
. +....++...+..+..+ +..+..+.+..|.+|++.|+++.|+....++++++++|.+. ..+....+.++++
T Consensus 344 ~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~ 423 (451)
T PF00083_consen 344 SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAG 423 (451)
T ss_pred ccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHH
Confidence 0 01022222222222222 45577789999999999999999999999999998888776 2333556677776
Q ss_pred HHHHHHHH-HhhccCCCCCChhhhHHh
Q 009563 499 CGIIGGLF-AFYLPETLNKPLYDTMAG 524 (532)
Q Consensus 499 ~~~~~~~~-~~~l~~~~~~~~~~~~~~ 524 (532)
+.++..++ .+++|||++++++|.+++
T Consensus 424 ~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 424 VCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred HHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 66665554 478899999999987654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=260.48 Aligned_cols=362 Identities=17% Similarity=0.187 Sum_probs=251.5
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|+ +..+.+++.+++.++..++.++.|+++|| +|||+++..+.++.+++.++++++++++.++++|++.|
T Consensus 18 ~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 93 (399)
T TIGR00893 18 PMLQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG 93 (399)
T ss_pred HHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 789999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+....++.|++|+++|++.+++......+|..+++.+++.+. +||+.|++.+++.++..++.+++.||+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 94 AAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence 9999999999999999999999999999999999999999999998765 9999999999888877766666777765
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+.... .+.++.....++. .. +. +.++..+..+...++.++++.++...+..
T Consensus 174 ~~~~~-~~~~~~~~~~~~~--------~~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (399)
T TIGR00893 174 QKAKW-LTEEEKYIVVGGL--------LA---------------EQ-----QGKGPSTPKKYQIKELLKDRRVWGLALGQ 224 (399)
T ss_pred Ccccc-CCHHHHhhcchhh--------cc---------------cc-----ccccccCCCccchHHHhcCHHHHHHHHHH
Confidence 32100 0111000000000 00 00 00001112223566778888766655555
Q ss_pred HHHHHHHHHHHHHhhhcccc-Ccc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchh--HHHHHH--HHHHHHHHHHh
Q 009563 350 VTINFLCSVVYYGISLNVVN-LQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPM--TIGTLW--FSGFFCLLGSL 421 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~--~~~~~~--~~~~~~~~~~~ 421 (532)
+.............+.+..+ .+. ..........++.+++.++.+++.||++||+. ...... +..+...+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (399)
T TIGR00893 225 FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF 304 (399)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 55544444444444443322 222 22334455567778899999999999999862 111111 11111111111
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh-hhhHHHH
Q 009563 422 VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG-GWLPFAV 495 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~-~~~~~~~ 495 (532)
................+..++ ....+...++..|.+|++.|+++.|+.+....+|..++|.+. ..+ +...+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~ 383 (399)
T TIGR00893 305 ATNYVNIPYAALALVALGFFG-LGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMV 383 (399)
T ss_pred HhccchhHHHHHHHHHHHHhc-hhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHH
Confidence 111111111222222233333 336788999999999999999999999999999999999887 234 5666777
Q ss_pred HHHHHHHHHHHHh
Q 009563 496 FAACGIIGGLFAF 508 (532)
Q Consensus 496 ~~~~~~~~~~~~~ 508 (532)
.+++.+++.+..+
T Consensus 384 ~~~~~~~~~~~~~ 396 (399)
T TIGR00893 384 VAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=255.71 Aligned_cols=339 Identities=18% Similarity=0.158 Sum_probs=239.3
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc--------chHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS--------PNYSTYV 185 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~l~ 185 (532)
.+.+++|+ |..+.|++.+++.+++.+++++.|+++|| +|||+++..+.++.+++.++++++ .+++.++
T Consensus 41 ~i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (399)
T PRK05122 41 YVHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLL 116 (399)
T ss_pred HHHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Confidence 46789999 99999999999999999999999999999 999999999999988877766543 2577899
Q ss_pred HHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHh
Q 009563 186 VLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIIL 262 (532)
Q Consensus 186 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~ 262 (532)
+.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+. +||+.+++..+..++.. +..
T Consensus 117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~-~~~ 195 (399)
T PRK05122 117 LGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGL-LLA 195 (399)
T ss_pred HHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999999999999999999999999999988875 99999887766654433 222
Q ss_pred cccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHH
Q 009563 263 PFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLT 342 (532)
Q Consensus 263 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (532)
...|+.+. .+++ +.++++.+++.
T Consensus 196 ~~~~~~~~---~~~~----------------------------------------------------~~~~~~~~~~~-- 218 (399)
T PRK05122 196 RPRPAVPP---VKGE----------------------------------------------------RLPFRRVLGRV-- 218 (399)
T ss_pred hcCCCCCC---CCcc----------------------------------------------------chhHHHHHHHH--
Confidence 22222210 0000 00011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCc-chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHh
Q 009563 343 RIRLFLAVTINFLCSVVYYGISLNVVNLQ-TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSL 421 (532)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~ 421 (532)
+..........+.........+.+..+.+ ...........++.+++.++.+++.||+++|+.+..+..+..++.+++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 298 (399)
T PRK05122 219 WPYGMGLALASIGFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL 298 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111111111111111111 12223334455677788999999999999999888887777777666655
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHH
Q 009563 422 VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVF 496 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~ 496 (532)
..+ .+ ..++..++.+++.+..++.......|..|++.|+++.|+.+....+|..++|.+. ..++...+++.
T Consensus 299 ~~~--~~--~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 374 (399)
T PRK05122 299 APS--PW--MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAA 374 (399)
T ss_pred hcc--HH--HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 432 21 3445667778888888887777888999999999999999999988888777665 34677788888
Q ss_pred HHHHHHHHHHHhhccCCCCCCh
Q 009563 497 AACGIIGGLFAFYLPETLNKPL 518 (532)
Q Consensus 497 ~~~~~~~~~~~~~l~~~~~~~~ 518 (532)
+++.+++.++..+++++++|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T PRK05122 375 ALAALLGLALTWLLYRRAPRAV 396 (399)
T ss_pred HHHHHHHHHHHHHhcccccccC
Confidence 8888877777777766555544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=262.48 Aligned_cols=413 Identities=14% Similarity=0.104 Sum_probs=269.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhH
Q 009563 49 FGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYK 128 (532)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~ 128 (532)
..+.+|.+..++++.+.+++.|+.+.++.. | |..+..+.++ ..|.. .+.+.......|+++ +..+
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~---~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~---s~~~ 77 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTM--V---AMVNKENSTD-LACLS------AENELDNIKNPNFKW---SGAL 77 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEE--E---EcccCCCCCC-ccccc------cccccccccCCCCCC---CHHH
Confidence 567788999999999999999998888771 1 1110000000 00000 001111233447899 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHhhccccchhhhhee
Q 009563 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS--PNYSTYVVLRMLTGFSTGGVGLCAFVLA 206 (532)
Q Consensus 129 ~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i 206 (532)
.|++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++
T Consensus 78 ~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~ 156 (465)
T TIGR00894 78 QGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKII 156 (465)
T ss_pred hhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHH
Confidence 9999999999999999999999999 999999999999999999887554 5688899999999999999999999999
Q ss_pred ecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHH
Q 009563 207 TEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAM 282 (532)
Q Consensus 207 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 282 (532)
.|++|+++|+++.++...+..+|.++++.+++.+. +||+.|++.+++.++..++.+++.+|+|+..... +.++.
T Consensus 157 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~- 234 (465)
T TIGR00894 157 VKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFEK- 234 (465)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHHH-
Confidence 99999999999999999999999999999988774 8999999999988887756666677776421111 11110
Q ss_pred HHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 009563 283 KIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYG 362 (532)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (532)
+ .+.+. . +.+ +...+.+..++++++++..+...+..+............
T Consensus 235 ~---~i~~~-~--------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (465)
T TIGR00894 235 K---YINSS-L--------------------QGQ-------KGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTY 283 (465)
T ss_pred H---HHHhh-c--------------------ccc-------cCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0 000 000011235778888887766655555444444333333
Q ss_pred hhhcc-ccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhH--------HHHHHHHHHHHHHHHhhh-ccchhH
Q 009563 363 ISLNV-VNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMT--------IGTLWFSGFFCLLGSLVK-NNGIWK 429 (532)
Q Consensus 363 ~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~ 429 (532)
.+.++ +..+.+ .........++.+++.+++|++.||+++|+.. ..+..........+.... .....
T Consensus 284 lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 362 (465)
T TIGR00894 284 LPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFY- 362 (465)
T ss_pred HHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-
Confidence 33333 222332 23333445677788999999999997644211 111111111111111111 11211
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHH
Q 009563 430 IVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVV--------LGGWLPFAVFAACGI 501 (532)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~--------~~~~~~~~~~~~~~~ 501 (532)
..++...+.+++.+...+.......|..|+ .+|.+.|+.+..+.+|++++|.+.. .++...|.+.++..+
T Consensus 363 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~ 440 (465)
T TIGR00894 363 -LTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNI 440 (465)
T ss_pred -HHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHH
Confidence 233334444444444455555666677765 7899999999999999999998871 124566777777777
Q ss_pred HHHHHHhhccCC
Q 009563 502 IGGLFAFYLPET 513 (532)
Q Consensus 502 ~~~~~~~~l~~~ 513 (532)
++.++...+.+.
T Consensus 441 i~~i~~~~~~~~ 452 (465)
T TIGR00894 441 LCVIFYLIFGSA 452 (465)
T ss_pred HHHHHeeeeecc
Confidence 776666555433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=262.31 Aligned_cols=387 Identities=13% Similarity=0.106 Sum_probs=273.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHHHHHH
Q 009563 55 RHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQA 134 (532)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~s 134 (532)
+++..++++.+...+|....... . |.+.+++|. +..+.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------p~~~~~~g~---s~~~~~~~~~ 44 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVA--------I--------------------------PTIAGDLGS---SLSQVQWVIT 44 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHhcCC---ChhhhhHHHH
Confidence 35566777888888887777766 4 899999999 9999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccCCCc
Q 009563 135 LFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSK 214 (532)
Q Consensus 135 ~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 214 (532)
.+.++..++.++.|+++|| +|||+++.++.++..+++++++++++++.++++|+++|++.+...+...+++.|++|+++
T Consensus 45 ~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 123 (485)
T TIGR00711 45 SYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK 123 (485)
T ss_pred HHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHH-----
Q 009563 215 RGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMR----- 286 (532)
Q Consensus 215 r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~----- 286 (532)
|+++.++...+..+|..+++.+++.+. +||+.|++.+++.++..++..+++||+++. .+++.+.....+.
T Consensus 124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~ 201 (485)
T TIGR00711 124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLG 201 (485)
T ss_pred HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHH
Confidence 999999999999999999999998886 999999999888877776666677775431 1111121111000
Q ss_pred --HHHHHhCCCCCccccccchhhhhhhhhcC-ccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHh
Q 009563 287 --AIAKSNGRHLPDGVVLMLDDEQENDASNG-KQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGI 363 (532)
Q Consensus 287 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (532)
.....++.+. +.... ........... .-......+...+.+....++++++.++...+..+...+......+..
T Consensus 202 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (485)
T TIGR00711 202 SLLYGLSEGPER-GWFDS--NEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLL 278 (485)
T ss_pred HHHHHHhhCCCC-CCCCc--hHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001000 00000 00000000000 000000000000111112357778777666555555555444444444
Q ss_pred hhcccc-Ccc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHH
Q 009563 364 SLNVVN-LQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV-KNNGIWKIVRMICGVM 438 (532)
Q Consensus 364 ~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 438 (532)
+.+..+ .+. ..........++.+++.++.+++.||++||+.+..+..+.+++...+.+. ......+ ......++
T Consensus 279 p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 357 (485)
T TIGR00711 279 PLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFL-AIALPQFI 357 (485)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHH-HHHHHHHH
Confidence 544433 222 23444455667788899999999999999999988888888777776632 2222222 34455677
Q ss_pred HHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 439 GIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.+++.+..++.......+..|++.++++.|+.+....+|+.+++.+.
T Consensus 358 ~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 404 (485)
T TIGR00711 358 RGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALI 404 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 78888877777777778889999999999999999999999998877
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-29 Score=247.35 Aligned_cols=328 Identities=13% Similarity=0.115 Sum_probs=235.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|++.+++|+ +..+.++..+++.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|+++|
T Consensus 44 ~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 119 (394)
T PRK10213 44 TPMAQDLGI---SEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLG 119 (394)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 889999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+...+++.|++|+++|+++.++...+.++|..++|.+++.+. +||+.|++.+++.++..+.....+||+|
T Consensus 120 ~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 120 LALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999999999999999999999886 9999999988777665544444456643
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+. ++ +.....++.+++|.++......
T Consensus 200 ~~----~~--------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~ 225 (394)
T PRK10213 200 GE----PS--------------------------------------------------HQKQNTFRLLQRPGVMAGMIAI 225 (394)
T ss_pred cc----cc--------------------------------------------------cchhHHHHHhcCHHHHHHHHHH
Confidence 10 00 0001234567777666544433
Q ss_pred HHHHHHH-HHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhcc
Q 009563 350 VTINFLC-SVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNN 425 (532)
Q Consensus 350 ~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 425 (532)
+...... ....+..+.+....+.+ ........+++.+++.++.+++.||.++ +.+..+..+..+..+++....+.
T Consensus 226 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~~~ 304 (394)
T PRK10213 226 FMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLWGSD 304 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhhh
Confidence 3322222 12223334444443332 2344455567788899999999999544 44333333333332222222222
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHH
Q 009563 426 GIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACG 500 (532)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~ 500 (532)
.+ ...+..++.+++.+...+...+++.+..|+ .++...++.....++|..+||.+. ..|....+...+++.
T Consensus 305 -~~--~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 305 -KI--VATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred -HH--HHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 21 344566777888888888888888888874 456777777777778888888777 234445555554444
Q ss_pred HHH
Q 009563 501 IIG 503 (532)
Q Consensus 501 ~~~ 503 (532)
++.
T Consensus 381 ~~~ 383 (394)
T PRK10213 381 LLT 383 (394)
T ss_pred HHH
Confidence 333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-29 Score=244.74 Aligned_cols=366 Identities=13% Similarity=0.067 Sum_probs=258.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceee-cccccchhhhHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVT-QWGLFCEEKYKV 129 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~s~~~~ 129 (532)
+-.++.+.+.+++.+......+..+.+ . +.+.+ |+|+ |..|.
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l--------~--------------------------~~~~~~~~~l---s~~q~ 72 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAV--------T--------------------------VNLNKIGFNF---TTDQL 72 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHhhhhhcCC---CHHHH
Confidence 346677777777777777777776665 3 66655 8999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc-----chHHHHHHHHHHHHhhccccchhhhh
Q 009563 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS-----PNYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 130 ~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
+++.+++.+++.++.++.|++.|| +|.|+++.++.++.++.+++.+++ ++++.+++.|++.|++ +..++....
T Consensus 73 g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~ 150 (462)
T PRK15034 73 FLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMG 150 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 999999999999999999999999 999999999999999999999987 8999999999999998 778899999
Q ss_pred eeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---------------------chHHHHHHHHHHHHHHHHHHhc
Q 009563 205 LATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---------------------TWRALYIASSIPSILFLLIILP 263 (532)
Q Consensus 205 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---------------------~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
.+++|+|+++||+++++.....++|..+++.+...+. +||...++.+++.++..++.++
T Consensus 151 ~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 151 NISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997777777765544443211 3788888888877777756666
Q ss_pred ccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHH
Q 009563 264 FLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTR 343 (532)
Q Consensus 264 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (532)
++++.|. .+ ....+.++.+|+|..|
T Consensus 231 ~~~~~~~---~~----------------------------------------------------~~~~~~~~vlk~~~~W 255 (462)
T PRK15034 231 GMNDIAS---SR----------------------------------------------------ASIADQLPVLQRLHLW 255 (462)
T ss_pred hCCCccc---cc----------------------------------------------------cCHHHHHHHhCCCchh
Confidence 6555331 00 0011345678888877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc-Ccc-hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHh
Q 009563 344 IRLFLAVTINFLCSVVYYGISLNVVN-LQT-NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSL 421 (532)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~ 421 (532)
...++.+..+.......+.++++... ... .......+..+...+..+++|+++||+|+++++.++.+++.++...+..
T Consensus 256 llslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l 335 (462)
T PRK15034 256 LLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFL 335 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 66665555444433333333333322 211 1122233344667778899999999999999999888877776644333
Q ss_pred hhc-cc-hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccc---------------------hhhhhHHHHHHHHHHHHH
Q 009563 422 VKN-NG-IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPT---------------------VVRNAALGCATQAAQLGA 478 (532)
Q Consensus 422 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~r~~~~g~~~~~~~~g~ 478 (532)
... .. .......+..+...+..+..+...+-++.+.+|+ ++.|.+.|+....+.+|+
T Consensus 336 ~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Gg 415 (462)
T PRK15034 336 TLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGG 415 (462)
T ss_pred HhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHccc
Confidence 222 11 1111333333333445555556666666676663 146789999999999999
Q ss_pred HHHHHHH-----Hhh-hhhHHHHHHHHHHHHHHHHhhc
Q 009563 479 ILAPFVV-----VLG-GWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 479 ~i~p~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~l 510 (532)
++.|.+. ..| +...|+.+.+..+++.++.++.
T Consensus 416 f~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 416 FFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred chhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999776 222 5567788887777777776544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-29 Score=252.84 Aligned_cols=385 Identities=11% Similarity=0.080 Sum_probs=263.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHHHHHHHH
Q 009563 57 FVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLVQALF 136 (532)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~s~~ 136 (532)
+.+++++.++..++....... . |.+.+++|. +..+.+++.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~--------~--------------------------p~~~~~~g~---s~~~~~~~~~~~ 54 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTA--------L--------------------------PSMAQSLGE---SPLHMHMVIVSY 54 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHH--------H--------------------------HHHHHHhCc---CHHHHHHHHHHH
Confidence 445566777777776655554 3 889999999 999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccCCCchh
Q 009563 137 FFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRG 216 (532)
Q Consensus 137 ~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 216 (532)
.++..++.+++|+++|| +|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+
T Consensus 55 ~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 133 (471)
T PRK10504 55 VLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYM 133 (471)
T ss_pred HHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHH------H
Q 009563 217 AAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMR------A 287 (532)
Q Consensus 217 ~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~------~ 287 (532)
++.++.....++|..+++.+++.+. +||+.|++.....++..+......|+.+. .+.+.+....... .
T Consensus 134 ~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~ 210 (471)
T PRK10504 134 AAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATL 210 (471)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999998876 99999999887777666555555665432 1112221111100 0
Q ss_pred HHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009563 288 IAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNV 367 (532)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (532)
....++.+.............-...... .....+++....+..+ .++++|+.++..+...++.........+..+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (471)
T PRK10504 211 TLALDGSKGLGLSPLAIAGLVAVGVVAL-LLYLLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFL 288 (471)
T ss_pred HHHHhcCCcCCcchHHHHHHHHHHHHHH-HHHHHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000000000000000000 0000000000011112 3478888777665555555555544444555554
Q ss_pred cc-Ccch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009563 368 VN-LQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGV 443 (532)
Q Consensus 368 ~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (532)
+. .+.+ .........++.+++.++.+++.||+|||+++..+..+..+..+++.+.......+ ...+..++.+++.
T Consensus 289 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~ 367 (471)
T PRK10504 289 QIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYY-LLPFVLFLQGMVN 367 (471)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHH-HHHHHHHHHHHHH
Confidence 42 2322 23334444556667778899999999999999888887777766665543222221 2334455566777
Q ss_pred HhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 444 AGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 444 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+..++....+..+..|++.++.+.|+.++...+|..++|.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 409 (471)
T PRK10504 368 STRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIA 409 (471)
T ss_pred HHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 777888888888999999999999999999999988888776
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-29 Score=249.32 Aligned_cols=344 Identities=18% Similarity=0.187 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHHHH
Q 009563 53 QLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGLV 132 (532)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~ 132 (532)
+++....++++.+++++|....++. . |.+.+|++. ++.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~--------~--------------------------~~i~~~~~~---~~~~~~~~ 55 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFY--------A--------------------------TAIAKTFFP---AGNEFASL 55 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhCC---CCCchHHH
Confidence 4557888899999999999999988 6 999999998 76665443
Q ss_pred -HHHH-----HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHH--------HHHHHHHHHHhhcccc
Q 009563 133 -QALF-----FFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYS--------TYVVLRMLTGFSTGGV 198 (532)
Q Consensus 133 -~s~~-----~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~ 198 (532)
.+.. .++..+++++.|+++|| +|||+.++.+.+++++++++++++++++ .++++|+++|++.+..
T Consensus 56 ~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~ 134 (434)
T PRK15075 56 MLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVE 134 (434)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3332 23335789999999999 9999999999999999999999999987 4689999999999999
Q ss_pred chhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh---------h--chHHHHHHHHHHHHHHHHHHhccccc
Q 009563 199 GLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF---------Q--TWRALYIASSIPSILFLLIILPFLPE 267 (532)
Q Consensus 199 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---------~--~wr~~f~~~~~~~~~~~~~~~~~~~e 267 (532)
.+....++.|++|+++|++++++...+..+|..+++.+++.+ . |||++|++..+...+.. ......||
T Consensus 135 ~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~~~e 213 (434)
T PRK15075 135 LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIF-LIRRSLEE 213 (434)
T ss_pred HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHHhcCC
Confidence 999999999999999999999999988888888777776654 1 99999987554332211 22222233
Q ss_pred CchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHH
Q 009563 268 SPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLF 347 (532)
Q Consensus 268 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (532)
++++.. +. .+ .+.+..++...+++..+....
T Consensus 214 ~~~~~~----------------~~-~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 244 (434)
T PRK15075 214 TEEFLA----------------RK-HR--------------------------------PSMREIFRSLAANWRIVLAGM 244 (434)
T ss_pred CHHHHH----------------hh-hc--------------------------------cccccHHHHHHHhHHHHHHHH
Confidence 211000 00 00 000001122223322221111
Q ss_pred H-HHHHHHHHHHHHHHhhhcccc-Ccch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH-HHHh
Q 009563 348 L-AVTINFLCSVVYYGISLNVVN-LQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCL-LGSL 421 (532)
Q Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~-~~~~ 421 (532)
. .+..........+..+.+.++ .+.+ .........++.+++.++.|++.||++||+.+..+..+..+... .+..
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 324 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111122222223333322 2322 23334455677788999999999999999988776554433222 1111
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHH-HHHHHHHHHH
Q 009563 422 VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQ-LGAILAPFVV 485 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~i~p~~~ 485 (532)
........ ......++.+++.+...+..+.+..|.+|++.|+++.++.+.... +++.++|.+.
T Consensus 325 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~ 388 (434)
T PRK15075 325 LVAAPSFA-RMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIS 388 (434)
T ss_pred HHcCCchH-HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHH
Confidence 11211111 222333444555566666677888999999999999999766554 3467777776
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-29 Score=246.11 Aligned_cols=348 Identities=13% Similarity=0.027 Sum_probs=250.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHH
Q 009563 50 GPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKV 129 (532)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~ 129 (532)
++..+...+.+.+..+...+........ . |.+.+++|+ |..+.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~--------------------------~~~~~~~~~---s~~~~ 50 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPG--------M--------------------------LAVVEDFNA---GAEWV 50 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcc--------h--------------------------HHHHHHhCC---CHHHH
Confidence 3445666666666666666654444333 3 788999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecc
Q 009563 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEP 209 (532)
Q Consensus 130 ~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 209 (532)
++..+.+.+++.+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+....++.|+
T Consensus 51 ~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 129 (406)
T PRK15402 51 PTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQES 129 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999998888889999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHH
Q 009563 210 VGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMR 286 (532)
Q Consensus 210 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 286 (532)
+|+++|.+..++......+|..++|.+++.+. +||+.|++.++..++..+..++..||+++....+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 201 (406)
T PRK15402 130 FEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSL-------- 201 (406)
T ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccH--------
Confidence 99999999999988888899999999988775 9999999988888777655556677764210000000
Q ss_pred HHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009563 287 AIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLN 366 (532)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (532)
++...+++.+++++.++.......+............+.+
T Consensus 202 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 241 (406)
T PRK15402 202 ----------------------------------------KELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVI 241 (406)
T ss_pred ----------------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0001134567778766554443333322221111112222
Q ss_pred -cccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHH
Q 009563 367 -VVNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVK--NNGIWKIVRMICGVMGI 440 (532)
Q Consensus 367 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 440 (532)
....+.+. ........++.+++.++.+++.||+++|+.+..+..+..++.+++.... .....+ +..+..++.+
T Consensus 242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g 320 (406)
T PRK15402 242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYL-WLTAGLSLYA 320 (406)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHH-HHHHHHHHHH
Confidence 12222222 2223334456778899999999999999998888777776666665543 111111 3455666777
Q ss_pred HHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 441 FGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
++.+...+......... ++++++++.++.+....++..+|+.+.
T Consensus 321 ~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~ 364 (406)
T PRK15402 321 FGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELS 364 (406)
T ss_pred HHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666655555444 347899999999999999998988887
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=256.92 Aligned_cols=386 Identities=17% Similarity=0.202 Sum_probs=252.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhH
Q 009563 49 FGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYK 128 (532)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~ 128 (532)
.++.+|+.+..++++++.+.++....... . |.+.+++|+ +..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~i~~~~~~---s~~~ 56 (496)
T PRK03893 14 LNRAQWKAFSAAWLGYLLDGFDFVLITLV--------L--------------------------TEVQGEFGL---TTVQ 56 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhCC---CHHH
Confidence 45678888889999999999998877776 4 899999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeec
Q 009563 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATE 208 (532)
Q Consensus 129 ~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 208 (532)
.+++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.++.+++++++.+++.|++.|++.+...+....++.|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 135 (496)
T PRK03893 57 AASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIE 135 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHH
Q 009563 209 PVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIM 285 (532)
Q Consensus 209 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~ 285 (532)
++|+++|+++.++...+..+|..+++.+.+.+. +||+.|++..+..++ .++....+||++++...+++.++.++..
T Consensus 136 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 214 (496)
T PRK03893 136 SWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMV 214 (496)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHH
Confidence 999999999999999999999999999988876 999999875544433 3244455676654321111000000000
Q ss_pred HHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhh----------hhhhccccchh----------------hhhcC
Q 009563 286 RAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEEL----------ATKEAVTGSVI----------------DVIKS 339 (532)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~----------------~~~~~ 339 (532)
+... ....+...... .........+. ...+.
T Consensus 215 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (496)
T PRK03893 215 DILY-----------------------RGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSG 271 (496)
T ss_pred HHHh-----------------------cchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 0000 00000000000 00000000000 00000
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHhhhcc-ccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 009563 340 PLTRIRLFLAVTINFLCS----VVYYGISLNV-VNLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWF 411 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~ 411 (532)
+ .+..........+... ......+.+. ...+. ..........++.+++.++.+++.||++||+.+..+..+
T Consensus 272 ~-~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~ 350 (496)
T PRK03893 272 K-RWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLI 350 (496)
T ss_pred c-chhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 0 0000000000000000 0112233333 23332 233444556677888999999999999999988877766
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----H
Q 009563 412 SGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----V 486 (532)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~ 486 (532)
..+..+.+........ + ......++.++...+..+....++.|.+|++.|++++|+.+....+|+.++|.+. .
T Consensus 351 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 351 SQLLIIPVFAIGGANV-W-VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred HHHHHHHHhhccccHH-H-HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 6655544433322221 1 2222222222222334456667888999999999999999999999999999887 2
Q ss_pred hhhhhHHHHHHHH
Q 009563 487 LGGWLPFAVFAAC 499 (532)
Q Consensus 487 ~~~~~~~~~~~~~ 499 (532)
.++...+...++.
T Consensus 429 ~g~~~~~~~~~~~ 441 (496)
T PRK03893 429 LDLGTALASLSFS 441 (496)
T ss_pred CChHHHHHHHHHH
Confidence 3444455444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=245.07 Aligned_cols=365 Identities=13% Similarity=0.050 Sum_probs=258.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHHH
Q 009563 52 WQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGL 131 (532)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~ 131 (532)
.+|++...+++++++.+.+....+.. . |++.+++|+ |..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~--------~--------------------------~~i~~~~~~---s~~~~g~ 46 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMV--------M--------------------------GPIAEYFNL---PVSSMSN 46 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh--------h--------------------------HHHHHHhCC---CHHHHHH
Confidence 35567777788888888887777776 4 899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccC
Q 009563 132 VQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVG 211 (532)
Q Consensus 132 ~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 211 (532)
+.+.+.+++.++++++|++.|| +|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+....++.|++|
T Consensus 47 ~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~ 125 (394)
T PRK03699 47 TFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYE 125 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999889999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHH
Q 009563 212 PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRA 287 (532)
Q Consensus 212 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 287 (532)
+++|++..+.......+|..++|.+.+.+. +||+.|++.+++.++..++.+ + .+.|+. .+++
T Consensus 126 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~-~-~~~p~~--~~~~---------- 191 (394)
T PRK03699 126 GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL-F-SEFPAL--GKHA---------- 191 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH-h-cCCccc--cccC----------
Confidence 999999999998889999989888876653 899999988887766553322 2 222210 0000
Q ss_pred HHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009563 288 IAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNV 367 (532)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (532)
+ + +.++ ..+.. .++..+...+..++............+.+.
T Consensus 192 ---------~-----------~----~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 232 (394)
T PRK03699 192 ---------P-----------K----ADKP--------------VAKEK-WGIGVLFLAIAALLYILAQLTFISWVPEYA 232 (394)
T ss_pred ---------c-----------c----ccCc--------------ccccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000 00000 122222222222222222222222233333
Q ss_pred -ccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009563 368 -VNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGV 443 (532)
Q Consensus 368 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (532)
+..+.+. ........++..++.++.+++.||+++|+.+.....+..+...++....+.. ...+..++.+++.
T Consensus 233 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~ 308 (394)
T PRK03699 233 QKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPS----HLLYAILGLGFFS 308 (394)
T ss_pred HHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHH
Confidence 3333322 2333444567788999999999999999988877766666555544333221 2334556667777
Q ss_pred HhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhhccC
Q 009563 444 AGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYLPE 512 (532)
Q Consensus 444 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 512 (532)
+..++...++..+..|. .++...+.......+|..++|.+. ..+....+++.+++.+++.+..+.+++
T Consensus 309 ~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 309 SAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 77778777777777664 457778888888889999999887 456777777777777777666555543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=247.37 Aligned_cols=323 Identities=23% Similarity=0.266 Sum_probs=239.6
Q ss_pred C-ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 009563 113 S-STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 113 ~-~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 191 (532)
| .+.+++|. +..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++..++++++.+++.|++.
T Consensus 20 ~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (352)
T PF07690_consen 20 PLYLAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLL 95 (352)
T ss_dssp H-HHHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccc
Confidence 6 78899999 99999999999999999999999999999 9999999999999999977777778888999999999
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccC
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~es 268 (532)
|++.+...+....++.|++|+++|++++++...+..+|.++++.+++.+. +||+.|++.+++.++..++..++++++
T Consensus 96 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 96 GIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred ccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence 99999999999999999999999999999999999999999999999887 899999999999988875545566654
Q ss_pred chhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhcccc-chhhhhcChHHHHHHH
Q 009563 269 PRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTG-SVIDVIKSPLTRIRLF 347 (532)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 347 (532)
|+....+.+.++ + ++.++... .++.+++++..+....
T Consensus 176 ~~~~~~~~~~~~------------------------------------~------~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (352)
T PF07690_consen 176 PPPRERESPKES------------------------------------E------SKKPKPLKPGFKSLFKNPVLWILLI 213 (352)
T ss_dssp STTTT--SSTTT------------------------------------T--------HHHCCCH-CTHHHHHHCCHHHHH
T ss_pred cccccccccccc------------------------------------c------cccccccccccccccccchhhhhhh
Confidence 421100000000 0 00001111 2455566654442223
Q ss_pred HHHHHHHHHHHHHHHhhhc-cccCcch-HH---HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh
Q 009563 348 LAVTINFLCSVVYYGISLN-VVNLQTN-LY---LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV 422 (532)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~ 422 (532)
..+...+.........+.+ ....+.+ .. .......+..+++.++.+++.||+++++..........+..+.+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 214 AFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred hhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444443 3333333 22 22445556667778999999999999888777777666666666554
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHH
Q 009563 423 KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAP 482 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p 482 (532)
....... ..++..++.+++.+...+....+..+.+|++.++++.|+.+....+|+.++|
T Consensus 294 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 294 PFSSSPV-WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHCHHH-HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4432222 4455667788888888999999999999999999999999999999999998
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-29 Score=242.99 Aligned_cols=319 Identities=17% Similarity=0.149 Sum_probs=236.8
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|+ +..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++.+++++++.+++.|++.|
T Consensus 29 p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 104 (385)
T TIGR00710 29 PEIAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQA 104 (385)
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 889999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+. +||+.|++.++..++..++.+++.||++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 105 FGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred cchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999998776 9999999988888777756666677754
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+... +.+.+ .....+++.++++.++...+..
T Consensus 185 ~~~~-~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 215 (385)
T TIGR00710 185 PYEA-RIQIS------------------------------------------------TYFETFLLLLKSKMFWGYALIY 215 (385)
T ss_pred CCcc-cCCHH------------------------------------------------HHHHHHHHHHcCchhHHHHHHH
Confidence 2100 00000 0011345566777665544433
Q ss_pred HHHHHHHHHHHHHhhhccc-cCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhcc
Q 009563 350 VTINFLCSVVYYGISLNVV-NLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNN 425 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 425 (532)
..............+.+.. ..+. ..........++.+++.++.+++.||+++|+.+..+..+..++.+++......
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (385)
T TIGR00710 216 GASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL 295 (385)
T ss_pred HHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333222222222222221 2222 22333445567788899999999999999998888777776666555543221
Q ss_pred c-hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHH-HHHHHHHHH
Q 009563 426 G-IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQL-GAILAPFVV 485 (532)
Q Consensus 426 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~ 485 (532)
. ......+....+.+++.+...+.......|..| +.++++.++.+..... |.+.+|.+.
T Consensus 296 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 296 GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111134445566777788888888888888887 5689999999888765 444555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=253.91 Aligned_cols=388 Identities=12% Similarity=0.050 Sum_probs=257.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
+.+.|+|.++..+++.......+....+.. . |++.+++|+ +..
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~i~~~~g~---s~~ 54 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVF--------F--------------------------KELQQIFQA---TYS 54 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhh--------H--------------------------HHHHHHhCc---chh
Confidence 455678888888777766555554444444 3 889999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHhhccccchhhhhee
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVV-LRMLTGFSTGGVGLCAFVLA 206 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i 206 (532)
+.+++.+.+.++..++.++.|+++|| +|||++++.+.++.++++++++++++++.+++ .|++.|++.+...+....++
T Consensus 55 ~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~ 133 (455)
T TIGR00892 55 ETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTML 133 (455)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999998865 57999999998777777888
Q ss_pred ecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHH
Q 009563 207 TEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMK 283 (532)
Q Consensus 207 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~ 283 (532)
.++++ ++|+++.++...+..+|..+++.+++.+. |||+.|++.+++.++..+..++..++.+... +.+.++
T Consensus 134 ~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~--- 207 (455)
T TIGR00892 134 GKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR--VSKSKS--- 207 (455)
T ss_pred HHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc--cccccc---
Confidence 89985 78999999999999999999999888776 9999999999887766544343333322100 000000
Q ss_pred HHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHh
Q 009563 284 IMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGI 363 (532)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (532)
.++. .++. ..++ ... ....++ ..+....++++++.++......++..+........+
T Consensus 208 -------~~~~-~~~~-------~~~~----~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 264 (455)
T TIGR00892 208 -------KEGL-PPDG-------STKK----LSK--KSTAEK--INRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFL 264 (455)
T ss_pred -------cccC-CCCC-------cccc----ccc--cchhhh--hhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHH
Confidence 0000 0000 0000 000 000000 001111246777766654444433333332222222
Q ss_pred hhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhh--CCchhHHHH--HHHHHHHHHHHHhhhccchhHHHHHHHH
Q 009563 364 SLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKL--GRKPMTIGT--LWFSGFFCLLGSLVKNNGIWKIVRMICG 436 (532)
Q Consensus 364 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~--gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (532)
+.+..+.+.+ ........+++.+++.++.+++.||. ++++..... .++.+++.++..... +.+ ..++..
T Consensus 265 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~--~~~i~~ 340 (455)
T TIGR00892 265 VPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG--DYT--GLVIYC 340 (455)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc--hHH--HHHHHH
Confidence 3333333322 23344455667778888899999973 333333332 222223333322222 222 345566
Q ss_pred HHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hh-hhhhHHHHHHHHHHHHHHH
Q 009563 437 VMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VL-GGWLPFAVFAACGIIGGLF 506 (532)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~-~~~~~~~~~~~~~~~~~~~ 506 (532)
++.+++.+...+...+++.|.+|++.++++.|+.+....+|++++|.+. .. ++...|++.+++.+++.+.
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 7777888888888889999999999999999999999999999999887 23 3566777777666665543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=248.04 Aligned_cols=358 Identities=14% Similarity=0.027 Sum_probs=255.4
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh-----cchHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF-----SPNYSTYVVL 187 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 187 (532)
|.+.++++. +..+.|++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++.+. .++++.+++.
T Consensus 41 ~~~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 116 (417)
T PRK10489 41 PVQIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLL 116 (417)
T ss_pred HHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 666778888 89999999999999999999999999999 99999999988887777665442 5688999999
Q ss_pred HHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcc
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
|++.|++.+...+...+++.|+.|+++|+++.++......+|..+|+.+++.+. +|++.|++.++..++.. +..+.
T Consensus 117 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 195 (417)
T PRK10489 117 GLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL-LPLLR 195 (417)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHh
Confidence 999999998888888999999999999999999999999999999999998875 89999998887766655 45566
Q ss_pred cccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHH
Q 009563 265 LPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRI 344 (532)
Q Consensus 265 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (532)
+|++++.. +++.+. .+.....++..++++.++.
T Consensus 196 l~~~~~~~--~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~ 228 (417)
T PRK10489 196 LPALPPPP--QPREHP---------------------------------------------LRSLLAGFRFLLASPVVGG 228 (417)
T ss_pred CCCCCCCC--cccccc---------------------------------------------hHHHHHHHHHHHcChHHHH
Confidence 67654210 000000 0000113345667776554
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc-Ccch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 009563 345 RLFLAVTINFLCSVVYYGISLNVVN-LQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGS 420 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~ 420 (532)
.++..+......... ...+.+..+ .+.+ ........+++.+++.++.+++.||.++++.+..+..+..++.+++.
T Consensus 229 ~~~~~~~~~~~~~~~-~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 307 (417)
T PRK10489 229 IALLGGLLTMASAVR-VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG 307 (417)
T ss_pred HHHHHHHHHHHHhHH-HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH
Confidence 443333322222222 223333333 3322 23334455677888999999999997777777777777666665554
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHH
Q 009563 421 LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAV 495 (532)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~ 495 (532)
..++ .+ ...+..++.+++.+...+...+++.|..|++.|+++.|+.+....+|..++|.+. ..+....+..
T Consensus 308 ~~~~--~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~ 383 (417)
T PRK10489 308 LMPM--WI--LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASA 383 (417)
T ss_pred ccch--HH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHH
Confidence 4322 11 3455566667777666677788999999999999999999999999998988887 3455566666
Q ss_pred HHHHHHH-HHHHHhhccCCCCCChhhhHHhhhh
Q 009563 496 FAACGII-GGLFAFYLPETLNKPLYDTMAGMKE 527 (532)
Q Consensus 496 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 527 (532)
.+++.++ +.+....++++++++.+|.++|..+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (417)
T PRK10489 384 SGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD 416 (417)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence 6655554 4444567788888877776655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=242.34 Aligned_cols=335 Identities=13% Similarity=0.105 Sum_probs=234.0
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+++|+|+ +..+.|++.+.+.+++.++++++|+++|| +|||+++..+.++.+++.+++++++|++.+++.|++.|
T Consensus 27 ~~~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G 102 (382)
T PRK10091 27 TELAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG 102 (382)
T ss_pred HHHHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 889999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+....++.|++++++|++++++...+..+|..+++.+++.+. +||+.|++.+++.++..+..++++||.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 103 FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999988888889999999999999999999999999999999988776 9999999999887776655666677753
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+. .+. +. + ...+.++++..+......
T Consensus 183 ~~----~~~-~~--------------------------------------~-----------~~~~~~~~~~~~~~~~~~ 208 (382)
T PRK10091 183 DE----AKG-GL--------------------------------------R-----------EQFHFLRSPAPWLIFAAT 208 (382)
T ss_pred cc----ccc-CH--------------------------------------H-----------HHHHHhcChHHHHHHHHH
Confidence 20 000 00 0 001234444443332222
Q ss_pred HHHHHHH-HHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhcc
Q 009563 350 VTINFLC-SVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNN 425 (532)
Q Consensus 350 ~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 425 (532)
....... ....|..++.....+.+ ........+++.+++.++.+++.||+++|+.+..+..+.+++.+++....+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (382)
T PRK10091 209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM 288 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 2211111 11223333333222322 3334455667788999999999999999999888887777766555443332
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhHh-hhccccccchhhhhHHHHHHHHHHHHHHHHHHHH----H--hhhhhHHHHHHH
Q 009563 426 GIWKIVRMICGVMGIFGVAGTYNLLF-IYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----V--LGGWLPFAVFAA 498 (532)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~--~~~~~~~~~~~~ 498 (532)
.. ...+..++.+++.....+... ....+..|++.++.+ ..+....+|..+||.+. . .++...+.+.++
T Consensus 289 ~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~ 363 (382)
T PRK10091 289 KT---ASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAAL 363 (382)
T ss_pred HH---HHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHH
Confidence 21 223333344444433333323 344454555555544 34566788999998877 2 245566666666
Q ss_pred HHHHHHHHHhhc
Q 009563 499 CGIIGGLFAFYL 510 (532)
Q Consensus 499 ~~~~~~~~~~~l 510 (532)
+.++.......+
T Consensus 364 ~~~~~~~~~~~~ 375 (382)
T PRK10091 364 LSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHHHH
Confidence 665555544433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=237.89 Aligned_cols=331 Identities=17% Similarity=0.139 Sum_probs=230.8
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh---h-----cchHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA---F-----SPNYSTYV 185 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~---~-----~~~~~~l~ 185 (532)
.+.+|+|+ |..++|++.+++.+++.++++++|+++|| +|||++++.+.++..++.+... + .++++.++
T Consensus 41 ~l~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 116 (392)
T PRK12382 41 FVHHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLV 116 (392)
T ss_pred HHHHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHH
Confidence 36789999 99999999999999999999999999999 9999999999888777654332 2 35789999
Q ss_pred HHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHh
Q 009563 186 VLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIIL 262 (532)
Q Consensus 186 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~ 262 (532)
++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. |||+.+++..+..++.. ...
T Consensus 117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~ 195 (392)
T PRK12382 117 VGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW-AFN 195 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HHH
Confidence 99999999999988888899999999999999999999999999999999988775 99988776555443322 111
Q ss_pred cccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHH
Q 009563 263 PFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLT 342 (532)
Q Consensus 263 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (532)
...||.+.. ++ .+ .+.++.++. .
T Consensus 196 ~~~~~~~~~---~~--------------------------------------~~--------------~~~~~~~~~--~ 218 (392)
T PRK12382 196 GTVRKVPAH---AG--------------------------------------ER--------------PSLWSVVGL--I 218 (392)
T ss_pred HhccCCCCC---cc--------------------------------------cC--------------chHHHHHHH--H
Confidence 222222100 00 00 000111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHh
Q 009563 343 RIRLFLAVTINFLCSVVYYGISLNVVNLQT-NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSL 421 (532)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~ 421 (532)
+....................+.+..+.+. .........+++.+++.++.+++.||+++|+.+..+..+..++.+++..
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 298 (392)
T PRK12382 219 WKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL 298 (392)
T ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH
Confidence 110011111111111111111222222221 2223334455667788899999999999999988888877777766555
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHH
Q 009563 422 VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVF 496 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~ 496 (532)
..+ .+ ..++..++.+++.+...+...+...|.+|++.|+++.|+.+....+|..++|.+. ..++...|.+.
T Consensus 299 ~~~--~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~ 374 (392)
T PRK12382 299 APT--AW--VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAG 374 (392)
T ss_pred ccc--HH--HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 432 22 3445566777777777788888888999999999999999999999999998877 35677788888
Q ss_pred HHHHHHHHHHHhhc
Q 009563 497 AACGIIGGLFAFYL 510 (532)
Q Consensus 497 ~~~~~~~~~~~~~l 510 (532)
+++.+++.++.+..
T Consensus 375 ~~~~~~~~~~~~~~ 388 (392)
T PRK12382 375 AISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHhh
Confidence 87777776665433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=240.63 Aligned_cols=321 Identities=13% Similarity=0.065 Sum_probs=242.7
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc-----hHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP-----NYSTYVVL 187 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~ 187 (532)
|.+..+++. +..+.|++.+++.++..++++++|+++|| +|||+++..+.++.+++.++.++++ +++.+++.
T Consensus 23 ~~~~~~~~~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (365)
T TIGR00900 23 PLYVLAGTG---SASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVL 98 (365)
T ss_pred HHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 566677888 99999999999999999999999999999 9999999999999999998888887 99999999
Q ss_pred HHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcc
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.+++.+. +||+.|++.++..++..+..+..
T Consensus 99 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 99 AGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998876 99999998887666654333222
Q ss_pred -cccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHH
Q 009563 265 -LPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTR 343 (532)
Q Consensus 265 -~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (532)
.||.++. ++.+. +++ ..++....++.+++++.++
T Consensus 179 ~~~~~~~~----~~~~~------------------------~~~-----------------~~~~~~~~~~~~~~~~~~~ 213 (365)
T TIGR00900 179 RIPELAAS----EIQAL------------------------SNA-----------------VLRDTREGIKFVLKNPLLR 213 (365)
T ss_pred ccccCCCc----ccccc------------------------chh-----------------HHHHHHhHHHHHHcCcHHH
Confidence 2222110 00000 000 0000112345667777766
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhcccc-Cc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 009563 344 IRLFLAVTINFLCSVVY-YGISLNVVN-LQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLL 418 (532)
Q Consensus 344 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~ 418 (532)
................. ...+.+..+ .+ ...........++.+++.++.+++.||++||+.+..+..+.+++.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (365)
T TIGR00900 214 TLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV 293 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 55554444444332222 333443332 22 22334445556777889999999999999999888877777777666
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 419 GSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+.+..+ +. + ...+..++.+++.+...+...++..|..|++.|+++.|+.+....++..++|.+.
T Consensus 294 ~~~~~~-~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 357 (365)
T TIGR00900 294 VGLTPP-NF-P-LFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357 (365)
T ss_pred HHhhch-hH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665543 12 1 4566677888888888889999999999999999999999999999999998876
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=236.67 Aligned_cols=331 Identities=12% Similarity=0.081 Sum_probs=232.5
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|+ |..+.|++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|+++|
T Consensus 30 p~~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 105 (381)
T PRK03633 30 PLWLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAG 105 (381)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 889999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhcccccCch
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILPFLPESPR 270 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 270 (532)
++.+...+.....+.+..++++|++++++...+.++|..+|+.+++.+. .++...+..+........+.+...++++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (381)
T PRK03633 106 IGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQA 185 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 9999988888888888899999999999999999999999999998876 22223333332222211111111111100
Q ss_pred hHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHH
Q 009563 271 WYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAV 350 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (532)
+ + +...+.++.++++.++......+
T Consensus 186 ------~--------------------------------------~-----------~~~~~~~~~~~~~~~~~~~~~~~ 210 (381)
T PRK03633 186 ------E--------------------------------------N-----------HDSTSIWPMLKLRQARLGVNGCI 210 (381)
T ss_pred ------C--------------------------------------C-----------CCCCCHHHHHHhcchHHHHHHHH
Confidence 0 0 00012344566665543322222
Q ss_pred HHHHHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccch
Q 009563 351 TINFLCSVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGI 427 (532)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (532)
.........+...+.+.++.+.+ .........+..+++.+..+++.||+++|+.+..+..+..++.+.+. . . .
T Consensus 211 ~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~-~ 286 (381)
T PRK03633 211 ISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-Q-A 286 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-h-H
Confidence 22222233333345554443332 23334455567788999999999999999988877777666555443 1 1 1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHH
Q 009563 428 WKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGII 502 (532)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~ 502 (532)
.......+.+++.....|...+.+.|..|++.++...+..+....+|..++|.+. ..++...|.+.+.+.++
T Consensus 287 ---~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~ 363 (381)
T PRK03633 287 ---AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFI 363 (381)
T ss_pred ---HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 1223344455555567788888889999988888888888888889999999877 34566677777666665
Q ss_pred HHHHHhh
Q 009563 503 GGLFAFY 509 (532)
Q Consensus 503 ~~~~~~~ 509 (532)
..+..+.
T Consensus 364 ~~~~~~~ 370 (381)
T PRK03633 364 YLLMLLR 370 (381)
T ss_pred HHHHHHh
Confidence 5444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=244.68 Aligned_cols=391 Identities=17% Similarity=0.139 Sum_probs=251.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHHH
Q 009563 52 WQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGL 131 (532)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~ 131 (532)
.+|..+..+.+.+.....+.....+. . |.+++ +|+ ++.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------p~~~~-~g~---s~~~~g~ 65 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALA--------M--------------------------PYLVE-QGF---SKGELGF 65 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhh--------h--------------------------HHHHH-cCC---CHhHhHH
Confidence 35666666667777777776666665 3 56654 699 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc----chHHHHHHHHHHHHhhccccchhhhheee
Q 009563 132 VQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS----PNYSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 132 ~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
+.+++.++..+++++.|+++|| +|||+.+..+.++.+++.++.++. ++++.+.+.|++.|++.+...+.....+.
T Consensus 66 ~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~ 144 (438)
T TIGR00712 66 ALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMV 144 (438)
T ss_pred HHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999999999999999999 999999999999999998887764 46778889999999999999888889999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-h---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHH
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF-Q---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMK 283 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~ 283 (532)
|++|+++|++++++.+.+..+|..+++.+.+.. . +||+.|++.+++.++..++.++++||+|+....+. .++.
T Consensus 145 ~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-- 221 (438)
T TIGR00712 145 HWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP-IEEY-- 221 (438)
T ss_pred HhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC-chhc--
Confidence 999999999999999999999999988766543 2 89999999999888877677778888764210000 0000
Q ss_pred HHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccc-hhhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 009563 284 IMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGS-VIDVIKSPLTRIRLFLAVTINFLCSVVYYG 362 (532)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (532)
++ +.++ +..+ +.+. +...+.. .+.+++++.++...+...+...........
T Consensus 222 -------~~--~~~~------~~~~-----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T TIGR00712 222 -------RN--DYPD------DYNE-----KAEQ--------ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDW 273 (438)
T ss_pred -------cc--cccc------cccc-----cccc--------ccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0000 0000 0000 0000001 123567776665544444444333233333
Q ss_pred hhhcccc-Ccch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH---HHHHHHHhhhccchhHHHHHHH
Q 009563 363 ISLNVVN-LQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSG---FFCLLGSLVKNNGIWKIVRMIC 435 (532)
Q Consensus 363 ~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 435 (532)
.+.+..+ .+.+ .........+..+++.++.+++.||+++++....+..... ++.+.+......+.+ .....
T Consensus 274 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 351 (438)
T TIGR00712 274 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPL--VDMIC 351 (438)
T ss_pred HHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchH--HHHHH
Confidence 3444432 2322 2334455667788899999999999964432222222221 111221211111211 22222
Q ss_pred HHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHH-HHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHh-
Q 009563 436 GVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGA-ILAPFVV-----VLGGWLPFAVFAACGIIGGLFAF- 508 (532)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~-~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~- 508 (532)
.+..+++.............|.+|++.|+++.|+.+....+|+ +++|.+. ..|+...+++.+++.+++.+..+
T Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 352 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3333333222222223467799999999999999998888764 5677766 34667777777776666655543
Q ss_pred hccCCC
Q 009563 509 YLPETL 514 (532)
Q Consensus 509 ~l~~~~ 514 (532)
..+|.|
T Consensus 432 ~~~~~~ 437 (438)
T TIGR00712 432 VMIGEK 437 (438)
T ss_pred HHhhcc
Confidence 445543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=244.64 Aligned_cols=365 Identities=16% Similarity=0.160 Sum_probs=263.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVG 130 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~ 130 (532)
|..+.++..+++.++....|..+++.. . ...+.+|.++ ...+.+
T Consensus 41 K~dl~i~~~~~~~y~~~~~d~~si~~a--------~-------------------------l~g~~edl~~---~~~~l~ 84 (495)
T KOG2533|consen 41 KLDLFILPFLCYLYFHAYLDKSSIVNA--------S-------------------------LSGLKEDLKL---VGNQLG 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHhcchhcchhH--------H-------------------------HcCCccccch---hhhhhh
Confidence 445666666777777777776655544 0 1356789999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeeccc
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPV 210 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 210 (532)
.+.++++++++++.+++|.+.|| ++..+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++.|+
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy 163 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWY 163 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhc
Confidence 99999999999999999999999 99999999999999999989888999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHh-------h--chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHH
Q 009563 211 GPSKRGAAGMSTFYFFSTGIALLSGIAYIF-------Q--TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEA 281 (532)
Q Consensus 211 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-------~--~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~ 281 (532)
.+++|++.++++....++|.++|.+++..+ . ||||.|++.+++.++..+++++++|+.|....-..+. |.
T Consensus 164 ~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~-ek 242 (495)
T KOG2533|consen 164 GKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE-EK 242 (495)
T ss_pred ChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH-HH
Confidence 999999999999999999999999998884 2 9999999999999999999999999998622111111 10
Q ss_pred HHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHH
Q 009563 282 MKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYY 361 (532)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (532)
+-..++.++.+... ..++..+..+++.+++|..+...+..++.........+
T Consensus 243 ~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~ 294 (495)
T KOG2533|consen 243 ELVVERLRESPSGG----------------------------IENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSY 294 (495)
T ss_pred HHHHHHHHhccCCC----------------------------cccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHH
Confidence 00011110000000 00003345788999999988888888877777776666
Q ss_pred Hhhhcccc-Ccc---hHHHHHHHHHHHHHHHHHHHHHHHhh----hCCchhHHHHHHHHHHHH-HHHHhhhccchhHHHH
Q 009563 362 GISLNVVN-LQT---NLYLNVLVNAVAEMPAFTITAVLLDK----LGRKPMTIGTLWFSGFFC-LLGSLVKNNGIWKIVR 432 (532)
Q Consensus 362 ~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~----~gr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 432 (532)
..++++.+ .+. +.........++++++.+++|+++|| ..+|........+..+.. ..+... .... ..
T Consensus 295 ~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~-~~~~---~~ 370 (495)
T KOG2533|consen 295 WLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA-AVLP---GA 370 (495)
T ss_pred HHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccch---HH
Confidence 77776666 212 23344566778899999999999999 445555444444443333 333333 2222 23
Q ss_pred HHHHHHHHHHHHhhhhhHhhhccccccchhhhhH-HHHHHHHHHHHHHHHHHHH
Q 009563 433 MICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAA-LGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~-~g~~~~~~~~g~~i~p~~~ 485 (532)
....+....+.....+......++......|... .+........+++++|.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~ 424 (495)
T KOG2533|consen 371 YGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF 424 (495)
T ss_pred hHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence 3334444555566667777888887766555544 4444445566677777766
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-28 Score=236.45 Aligned_cols=337 Identities=13% Similarity=0.107 Sum_probs=226.0
Q ss_pred CCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 009563 112 GSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 112 ~~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 191 (532)
+|.+.++++. +..+.++..+++.++++++++++|+++|| +|||++++.+.+++++++++++++++++.++++|+++
T Consensus 39 l~~i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~ 114 (413)
T PRK15403 39 IINVVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQ 114 (413)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3889999999 99999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccC
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~es 268 (532)
|++.+...+....++.|++++++|++++++...+..+|..++|.+++.+. +||+.|++.+++.++..+..++.+||+
T Consensus 115 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~ 194 (413)
T PRK15403 115 GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPET 194 (413)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99998777777888999999999999999999999999999999998776 999999999988887765556677886
Q ss_pred chhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHH
Q 009563 269 PRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFL 348 (532)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (532)
++. +++... .+.....++++++++.++...+.
T Consensus 195 ~~~---~~~~~~---------------------------------------------~~~~~~~~~~ll~~~~~~~~~l~ 226 (413)
T PRK15403 195 VKR---GAVPFS---------------------------------------------AKSVLRDFRNVFRNRLFLTGAAT 226 (413)
T ss_pred ccc---cCCCCC---------------------------------------------hHHHHHHHHHHHcCHHHHHHHHH
Confidence 420 000000 00001245677888877765555
Q ss_pred HHHHHHHHHHHHHHhhhccccC-cchHH---HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh--
Q 009563 349 AVTINFLCSVVYYGISLNVVNL-QTNLY---LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV-- 422 (532)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~-- 422 (532)
..+............|.+..+. +.+.. ........+.+++..+.+.+.++..+++.......+..++.+++...
T Consensus 227 ~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~ 306 (413)
T PRK15403 227 LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNL 306 (413)
T ss_pred HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333334443332 33222 22233344555666666666654444343322222222222222211
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHH
Q 009563 423 KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----VLGGWLPFAVFAA 498 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~~~~~~~~~~~ 498 (532)
.....++ ..++..++.+++.+...|.......... ...+|++.++.+.....+..+++... ..+...+|...++
T Consensus 307 ~~~~~~~-~~~~~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 384 (413)
T PRK15403 307 LWPHVWL-WSVLGTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAV 384 (413)
T ss_pred HccccHH-HHHHHHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 1111111 2345666677777777776664332221 12368888888877766666655554 3345555555554
Q ss_pred HHHH
Q 009563 499 CGII 502 (532)
Q Consensus 499 ~~~~ 502 (532)
+..+
T Consensus 385 ~~~~ 388 (413)
T PRK15403 385 VAGV 388 (413)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=248.10 Aligned_cols=337 Identities=19% Similarity=0.127 Sum_probs=231.6
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|+ +..+.|++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|
T Consensus 19 ~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (379)
T TIGR00881 19 PYLVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNG 94 (379)
T ss_pred HHHHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 889999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHH-HHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccC
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLS-GIAYIFQ---TWRALYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~es 268 (532)
++.+...+...+++.|++|+++|+++.++...+..+|..+++ .++..+. +||+.|++.+++.++..++.+++.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 95 IFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 999999999999999999999999999999999999999999 4555544 999999999888877776777778887
Q ss_pred chhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHH
Q 009563 269 PRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFL 348 (532)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (532)
|+....+.+.+ ..+++ .+...++.+ ++.+..+...+.+++++.++...+.
T Consensus 175 ~~~~~~~~~~~---------------~~~~~--------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (379)
T TIGR00881 175 PQSCGLPPAEE---------------MPNEE--------PDGDAEKKE-------EELTKKQIFLQYVLLNKVLWYISLG 224 (379)
T ss_pred ccccccCcccc---------------Ccccc--------ccccccccc-------ccccchHHHHHHHHhcchHHHHHHH
Confidence 64210000000 00000 000000000 0000111234566777766655444
Q ss_pred HHHHHHHHHHHHHHhhhcc-ccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chhHHH-HH-HHHHHHHHHHHh
Q 009563 349 AVTINFLCSVVYYGISLNV-VNLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGR-KPMTIG-TL-WFSGFFCLLGSL 421 (532)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr-~~~~~~-~~-~~~~~~~~~~~~ 421 (532)
.+.............+.+. +..+. ..........++.+++.++.+++.||..+ |+.... .. ....++......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (379)
T TIGR00881 225 YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4444433332222233332 22222 23344455567788999999999998643 332222 21 111222222221
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 422 VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
....... ...+..++.++......+....+..|.+|++.|+++.|+.+....+|+.++|.+.
T Consensus 305 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 366 (379)
T TIGR00881 305 NPAANPL--MDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPL 366 (379)
T ss_pred CcchhHH--HHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhH
Confidence 1111211 2334444455544455566677889999999999999999999999999998876
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=236.44 Aligned_cols=342 Identities=15% Similarity=0.097 Sum_probs=239.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVG 130 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~ 130 (532)
+.....++.+++.++.-+++....... . |.+++++|+ +..+.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------p~i~~~~~~---s~~~~g 64 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDIL--------L--------------------------PQFQQAFTL---TNFQAG 64 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhCC---CHHHHH
Confidence 334455555666667767777766666 4 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHH---hhcchHHHHHHHHHHHHhhccccchhhhheee
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLT---AFSPNYSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
++.+.+.+++.+++++.|++.|| +|||+++.++.++++++++++ .++++++.++++|+++|+|.|...+....++.
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~ 143 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVT 143 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999 999999999999999999885 46899999999999999999999999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------------chHHHHHHHH-HHHHHH
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----------------------------TWRALYIASS-IPSILF 257 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----------------------------~wr~~f~~~~-~~~~~~ 257 (532)
|+.++++|.+.+++.+..+.+|..+++.++..+. +||++|+... +..++.
T Consensus 144 ~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~ 223 (438)
T PRK10133 144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA 223 (438)
T ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887777777899999999999999988765321 5666665433 333333
Q ss_pred HHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhh
Q 009563 258 LLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVI 337 (532)
Q Consensus 258 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (532)
.++....+||.+.. +++ + ++........++++
T Consensus 224 ~~~~~~~~p~~~~~---~~~-~--------------------------------------------~~~~~~~~~~~~ll 255 (438)
T PRK10133 224 LLIMLTKFPALQSD---NHS-D--------------------------------------------AKQGSFSASLSRLA 255 (438)
T ss_pred HHHHHhcCCCCCcc---ccc-c--------------------------------------------ccccchhhhHHHHH
Confidence 32223334432110 000 0 00000112345677
Q ss_pred cChHHHHHHHHHHHHHHHHHHH-HHHhhhccc-cCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 009563 338 KSPLTRIRLFLAVTINFLCSVV-YYGISLNVV-NLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFS 412 (532)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~ 412 (532)
++|.++...+..++........ .|..++..+ ..+.+ .........++.++|+++++++.||+++|+++..+..+.
T Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~ 335 (438)
T PRK10133 256 RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 8887665444433333332222 222223222 22332 334446667788899999999999999999988887777
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 413 GFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.+.+++..+.... ..+....+.+++.+..+|..++...+..|++ .+++.++..+ ..+|+.++|.+.
T Consensus 336 ~~~~~~~~~~~~~-----~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~ 401 (438)
T PRK10133 336 MALCLISAFAGGH-----VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVM 401 (438)
T ss_pred HHHHHHHHHcCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHH
Confidence 6666555443321 2345567789999999999999999998764 5777777764 446666666655
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-28 Score=234.82 Aligned_cols=339 Identities=12% Similarity=0.002 Sum_probs=232.7
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
+.+.+|++. +..+.+++.+.+.+++.++.+++|+++|| +|||++++++.++.++++++++++.+. ++.|+++|
T Consensus 27 ~~~~~~~~~---s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G 99 (393)
T PRK11195 27 IALLKELHY---PDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVG 99 (393)
T ss_pred HHHHHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 455788888 89999999999999999999999999999 999999999999999999888777664 78899999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhcccccCch
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILPFLPESPR 270 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 270 (532)
++.+...|...+++.|++|+++|+++.++.+....+|.++||.+++++. .|+..+.+.+...++.. +..+.+||+|.
T Consensus 100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~~~ 178 (393)
T PRK11195 100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAA-LFNLFIPRLGA 178 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcc
Confidence 9999999999999999999999999999999999999999999999987 55556655554444333 45567787653
Q ss_pred hHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHH
Q 009563 271 WYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAV 350 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (532)
....++ .+ ..+..+ ..+...+.+++++..+.......
T Consensus 179 ~~~~~~-~~-~~~~~~-----------------------------------------~~~~~~~~l~~~~~~~~~~~~~~ 215 (393)
T PRK11195 179 RRPGQS-WN-PIALLR-----------------------------------------DFFHACRVLWRDKLGRFSLAGTT 215 (393)
T ss_pred cccccC-CC-HHHHHH-----------------------------------------HHHHHHHHHHhCchhHHHHHHHH
Confidence 110000 00 000000 00012345667776554444443
Q ss_pred HHHHHHHHHHHHhhhcccc-C---cchHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccc
Q 009563 351 TINFLCSVVYYGISLNVVN-L---QTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNG 426 (532)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (532)
+.+.......+..+.+.++ . ....+......+++.+++.++.+++.||.++++.+..+.. .++..+.+.... +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~--~ 292 (393)
T PRK11195 216 LFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH--S 292 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh--H
Confidence 3333333333333333322 1 2234444556667888899999999999888877766643 333333333221 2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchh-hhhHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHH
Q 009563 427 IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVV-RNAALGCATQAAQLGAILAPFVV----VLGGWLPFAVFAACGI 501 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~i~p~~~----~~~~~~~~~~~~~~~~ 501 (532)
.+ ...+..++.+++.+...+...+...+..|++. +|++.++.+...+++..++..+. ..|-...+++.++..+
T Consensus 293 ~~--~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 293 LL--PAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL 370 (393)
T ss_pred HH--HHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 21 34455556777777767777777788766654 79999999999999988877666 4444455555555444
Q ss_pred HHHHHH
Q 009563 502 IGGLFA 507 (532)
Q Consensus 502 ~~~~~~ 507 (532)
++..+.
T Consensus 371 ~~~~~~ 376 (393)
T PRK11195 371 VALAMA 376 (393)
T ss_pred HHHHHH
Confidence 444443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-27 Score=232.39 Aligned_cols=337 Identities=16% Similarity=0.144 Sum_probs=236.0
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTV-VCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
.+++++|. |..+.|++.+++.++..+.+++.|.++|| +|||+.++. +.++..++.++++++++++.+++.|++.|
T Consensus 23 ~l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 98 (375)
T TIGR00899 23 FLSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLS 98 (375)
T ss_pred HHHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 46789999 99999999999999999999999999999 999887654 56666777888899999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHH--HHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccccc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAA--GMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPE 267 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~e 267 (532)
.+.+...|...+++.|+.|+++|++. .+....+.++|..+++.+++.+. +||+.|++.+++.++..++.++++||
T Consensus 99 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 99 SFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred hhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888888888899887777754 57788888999999999988876 99999999998877777666677888
Q ss_pred CchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHH
Q 009563 268 SPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLF 347 (532)
Q Consensus 268 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (532)
.|++...+. . ..+.++.++++.++....
T Consensus 179 ~~~~~~~~~--------------------------------------~--------------~~~~~~~~~~~~~~~~~~ 206 (375)
T TIGR00899 179 YPRGAPGAL--------------------------------------T--------------RLEVRGLLASRDTRLLFV 206 (375)
T ss_pred cccCccccc--------------------------------------C--------------cchhhhhhcCcchHHHHH
Confidence 763110000 0 001112344444443333
Q ss_pred HHHHHHHHHHHHHHHhhhcc-ccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhh
Q 009563 348 LAVTINFLCSVVYYGISLNV-VNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVK 423 (532)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~ 423 (532)
..+..+..........+.+. ...+.+. ...........+++.++.+++.||++||+.+..+.++..+....+....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T TIGR00899 207 ACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN 286 (375)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 33333322222222222222 2222222 2222233344566788999999999999988777665555444433322
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHH
Q 009563 424 NNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAA 498 (532)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~ 498 (532)
+ .+ ...+..++.+++.+...+....+..|..|++ ++++.++.+...++|..++|.+. ..++...+++.++
T Consensus 287 ~--~~--~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~ 361 (375)
T TIGR00899 287 S--LW--ALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIV 361 (375)
T ss_pred H--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 2 11 3444556667777777788888888988765 57999999999999999998877 3456777888887
Q ss_pred HHHHHHHHHhhcc
Q 009563 499 CGIIGGLFAFYLP 511 (532)
Q Consensus 499 ~~~~~~~~~~~l~ 511 (532)
+.+++.++..+++
T Consensus 362 ~~~~~~~~~~~~~ 374 (375)
T TIGR00899 362 MLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHheec
Confidence 7777777666554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-28 Score=237.39 Aligned_cols=338 Identities=19% Similarity=0.168 Sum_probs=242.6
Q ss_pred Cceeecccccchhhh-----HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKY-----KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVL 187 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~-----~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (532)
|.+.+++|+ +.. ..|++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.
T Consensus 38 ~~~~~~~g~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (408)
T PRK09874 38 PLYVEQLGV---TGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMVLMGLAQNIWQFLIL 113 (408)
T ss_pred HHHHHHhCC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777888888 543 35899999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcc
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..+++.+++.+. +||+.|++.+++.++..+..+++
T Consensus 114 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (408)
T PRK09874 114 RALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFC 192 (408)
T ss_pred HHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999765 46777788899999999999999999999999999999998875 99999999998877776566666
Q ss_pred cccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHH
Q 009563 265 LPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRI 344 (532)
Q Consensus 265 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (532)
+||.++.. ++.++ .+ .....+.++++..+.
T Consensus 193 ~~~~~~~~---~~~~~-~~----------------------------------------------~~~~~~~~~~~~~~~ 222 (408)
T PRK09874 193 IRENFQPV---SKKEM-LH----------------------------------------------MREVVTSLKNPKLVL 222 (408)
T ss_pred hccCcccc---cchhh-hH----------------------------------------------HHHHHHhCcCCchHH
Confidence 77653210 00000 00 001122334444333
Q ss_pred HHHHH-HHHHHHHHHHHHHhhhccccC---cch----HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 009563 345 RLFLA-VTINFLCSVVYYGISLNVVNL---QTN----LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFC 416 (532)
Q Consensus 345 ~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~ 416 (532)
..... ..............+.+..+. ..+ ........+++.+++.+..+++.||++||+.+..+..+..++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 302 (408)
T PRK09874 223 SLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLL 302 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 22221 111111111111111111111 111 1122223345666788889999999999999888877776666
Q ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhhhhh
Q 009563 417 LLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWL 491 (532)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~ 491 (532)
+.+....+ .+ ...+..++.+++.+...+...+...+..|++.+++..++.+....+|..++|.+. ..++..
T Consensus 303 ~~~~~~~~--~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~ 378 (408)
T PRK09874 303 IPMSFVQT--PL--QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRA 378 (408)
T ss_pred HHHHHhcc--HH--HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhH
Confidence 55544332 21 3445566778888888888888888889999999999999999999999999887 346778
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 009563 492 PFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~ 509 (532)
.|++.+++.+++.++.++
T Consensus 379 ~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 379 VFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777766544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-28 Score=220.97 Aligned_cols=370 Identities=15% Similarity=0.077 Sum_probs=277.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVG 130 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~ 130 (532)
+.+++.+.+..+.........+..+.+ . +.|.+|+|+ |+.|.+
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l--------~--------------------------~~i~~~~~L---S~~q~~ 52 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPL--------G--------------------------VFIKSDFGL---SEGQKG 52 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------hhhccccCC---CHHHHH
Confidence 445666666666655556666666666 3 788899999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcch---HHHHHHHHHHHHhhccccchhhhheee
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPN---YSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
++.++..+..++..++.|.+.|| ||.|++..++.++..+-++..+++.+ ++++++.+++.|++ |..+.+...+++
T Consensus 53 ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s 130 (417)
T COG2223 53 LLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNAS 130 (417)
T ss_pred HHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehccccccc
Confidence 99999999999999999999999 99999999999999999999998854 45999999999996 566888999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---c---hHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHH
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---T---WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEA 281 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~---wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~ 281 (532)
+|+|++++|.++|+.. ..++|..+...++..+. + ||....+..+..++..+..++.+.|.|......++..
T Consensus 131 ~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~-- 207 (417)
T COG2223 131 FFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL-- 207 (417)
T ss_pred ccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc--
Confidence 9999999999999999 88999988888777766 6 9999999999888888788888888764211000000
Q ss_pred HHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHH-HHHH
Q 009563 282 MKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLC-SVVY 360 (532)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 360 (532)
+..++.+++++..|...+..+..+... .+..
T Consensus 208 ------------------------------------------------~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~ 239 (417)
T COG2223 208 ------------------------------------------------PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSA 239 (417)
T ss_pred ------------------------------------------------hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 023456777777776655554444332 3333
Q ss_pred HHhhhccccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccc---hhHHHHHH
Q 009563 361 YGISLNVVNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNG---IWKIVRMI 434 (532)
Q Consensus 361 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 434 (532)
+...++..+++.+. ........+.+.+.+.++|+++||+|.++.+......++++..+..+..... ...+..+.
T Consensus 240 ~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (417)
T COG2223 240 YLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVA 319 (417)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHH
Confidence 33333333444332 2333444455667888999999999999999999999999888888765222 22223444
Q ss_pred HHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh-hhhHHHHHHHHHHHHHHHHh
Q 009563 435 CGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG-GWLPFAVFAACGIIGGLFAF 508 (532)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~-~~~~~~~~~~~~~~~~~~~~ 508 (532)
..+...+..+......+-++...+|.+ .|.+.|+....+.+|++.-|... ..| +...|+++..+.+++.+...
T Consensus 320 ~~l~l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 320 VFLALFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred HHHHHHHHhccCcchheeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777778888888888764 59999999999999998888777 334 66778888888888777665
Q ss_pred hcc
Q 009563 509 YLP 511 (532)
Q Consensus 509 ~l~ 511 (532)
.+.
T Consensus 399 ~~y 401 (417)
T COG2223 399 ALY 401 (417)
T ss_pred HHH
Confidence 543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=233.42 Aligned_cols=323 Identities=13% Similarity=0.122 Sum_probs=227.3
Q ss_pred CCCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 009563 110 GDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRM 189 (532)
Q Consensus 110 ~~~~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 189 (532)
|.+|.+.+++|+ ++.+.+++.+++.++..++.+++|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+
T Consensus 12 p~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (377)
T PRK11102 12 PALPVIAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF 87 (377)
T ss_pred ccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 445899999999 99999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
+.|++.+...+...+++.|++|+++|++++++......+|..+++.+++.+. +||+.|++.+++.++..++..+++|
T Consensus 88 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (377)
T PRK11102 88 LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIP 167 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999988776 9999999988888777656666777
Q ss_pred cCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHH
Q 009563 267 ESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRL 346 (532)
Q Consensus 267 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (532)
|+++.. ++. +.+.+ ....++++.++++..+...
T Consensus 168 ~~~~~~---~~~-------------------------------------~~~~~-------~~~~~~~~~~~~~~~~~~~ 200 (377)
T PRK11102 168 ETLPKE---RRQ-------------------------------------PFHLR-------TTIRNFASLFRHKRVLGYM 200 (377)
T ss_pred ccCccc---ccC-------------------------------------CCChH-------HHHHHHHHHHcChHHHHHH
Confidence 754210 000 00000 0011344567776655433
Q ss_pred HHHHHHHHHHHHHH-HHhhhccccCc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh
Q 009563 347 FLAVTINFLCSVVY-YGISLNVVNLQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV 422 (532)
Q Consensus 347 ~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~ 422 (532)
+...+......... +...++.+..+ .+.........+..+++.++.+++.||+|||+.+..+..+..+..+.+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 280 (377)
T PRK11102 201 LASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVS 280 (377)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222221111 11112222222 223344455567778899999999999999998887776544433332222
Q ss_pred h-ccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHH-HHHHHHHHHHH
Q 009563 423 K-NNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAA-QLGAILAPFVV 485 (532)
Q Consensus 423 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~p~~~ 485 (532)
. .....+ ...+...+...+.+...+.......|..| +.++++.++.+... .+|..+++.+.
T Consensus 281 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 281 ALLDLGFW-ALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHhhhHH-HHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111 22233333333444445555666777776 77899999987764 36667777665
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-27 Score=231.85 Aligned_cols=328 Identities=13% Similarity=0.092 Sum_probs=225.5
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|. +..+.++..+.+.++..+++++.|+++|| +|||+++..+.++..++.+++.++++++.+++.|+++|
T Consensus 27 p~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 102 (392)
T PRK10473 27 PRIAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQG 102 (392)
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 889999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+. +||+.|++.++..++..++..+++||++
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999988765 9999999998888777766667777764
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+.. +++.. ......++.++++.++......
T Consensus 183 ~~~--~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 212 (392)
T PRK10473 183 PAR--APAAS------------------------------------------------SKPRENSESLLNRFFLSRLVIT 212 (392)
T ss_pred Ccc--cCCcc------------------------------------------------chHHHHHHHHhCHHHHHHHHHH
Confidence 210 00000 0000123455666555443333
Q ss_pred HHHHHHHHHHHHHhhhc-cccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhcc
Q 009563 350 VTINFLCSVVYYGISLN-VVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNN 425 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~ 425 (532)
..............+.+ ....+.+ ........+++.+++.++.+++.||++||+.+..+..+..++.+.+......
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (392)
T PRK10473 213 TLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH 292 (392)
T ss_pred HHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211111111222 1222222 2333445567778899999999999999999888888777777666654332
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchh-hhhHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHH
Q 009563 426 GIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVV-RNAALGCATQAAQLGAILAPFVV-VLGGWLPFAVFAACG 500 (532)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~i~p~~~-~~~~~~~~~~~~~~~ 500 (532)
. .......+...+.+..++.... .+..|.+. .+.+.++......+|..+++.+. ..++.....+.+.+.
T Consensus 293 ~----~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 293 A----VSLFGITLICAGFSVGFGVAMS--QALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred H----HHHHHHHHHHHHHHHHhHHHHH--HHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 2 2223333333333333333322 33334333 35555555555566677776666 455444344444333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-27 Score=228.68 Aligned_cols=355 Identities=15% Similarity=0.178 Sum_probs=257.6
Q ss_pred eecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHh
Q 009563 116 VTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP--NYSTYVVLRMLTGF 193 (532)
Q Consensus 116 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~ 193 (532)
..++++ ++.+.|++.+.++.|+.+++++.|+++|| +|.|+++..+.++.++++++...+- +++.+++.|+++|+
T Consensus 65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL 140 (466)
T ss_pred CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence 678999 99999999999999999999999999999 9999999999999999999998874 55678999999999
Q ss_pred hccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 194 STGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
+.|..+|+...+...|.|++||++..++...+..+|.+++.++++.+. ||+++|++.++.+++..++.+++..|+|
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P 220 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP 220 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999998886 9999999999999999977777788888
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
.... .-..+|. +++.+... ....+++.+.+++++++++.+|...+..
T Consensus 221 ~~h~-~is~~El----~~I~~~k~----------------------------~~~~~~~~~vP~~~i~ts~~vwai~~~~ 267 (466)
T KOG2532|consen 221 SKHP-NISEKEL----KYIEKGKS----------------------------EAHVKKKPPVPYKAILTSPPVWAIWISA 267 (466)
T ss_pred ccCC-CCCHHHH----HHHHhccc----------------------------ccccCCCCCCCHHHHHcCHHHHHHHHHH
Confidence 5311 0111111 11111000 0000111456899999999877666555
Q ss_pred HHHHHHHHHHHHHhhhcccc-Ccch---HHHHHHHHHHHHHHHHHHHHHHHhhhCC---------chhHHHHHHHHHHHH
Q 009563 350 VTINFLCSVVYYGISLNVVN-LQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGR---------KPMTIGTLWFSGFFC 416 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr---------~~~~~~~~~~~~~~~ 416 (532)
+.............|.++.+ ++.+ .+....+..+...+..+++|.++||+.+ |..-.++....++++
T Consensus 268 f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l 347 (466)
T KOG2532|consen 268 FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFL 347 (466)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHH
Confidence 55554444444444444432 3333 2333444456677888999999999755 223356677777777
Q ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH--------Hhh
Q 009563 417 LLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV--------VLG 488 (532)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~--------~~~ 488 (532)
+.+.+......+ ..+++..+.....+...+....-..+.. +++.+..+|+.+....+.++++|.+. ...
T Consensus 348 ~~l~~~~~~~~~--~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~e 424 (466)
T KOG2532|consen 348 LVLAFTSDEHRL--LAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREE 424 (466)
T ss_pred HeeeecCCCcch--HHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHH
Confidence 777777665542 2222222222222222233333333334 56779999999999999999999998 124
Q ss_pred hhhHHHHHHHHHHHHHHHHhhc
Q 009563 489 GWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~l 510 (532)
+...|++.+++.+++.++..+.
T Consensus 425 W~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 425 WRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHhchheeEe
Confidence 6778888888888887666554
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=241.23 Aligned_cols=354 Identities=16% Similarity=0.162 Sum_probs=245.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVG 130 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~ 130 (532)
+..++.++++++..+++..|.+.++.. . +.+++.||+ +++..|
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv--------~--------------------------~~v~~~fni---~~s~~G 71 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGV--------L--------------------------KEVQTYFNI---SDSELG 71 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhh--------h--------------------------HHHHHhcCC---Cchhcc
Confidence 445677888889999999999888777 5 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeeccc
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPV 210 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 210 (532)
++.+.+.+.+.+++++.|+++|| |.||+++.+|..++.++.++++++..||+++++|.+.|+|.+.+.++++.+++|.+
T Consensus 72 ll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f 150 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF 150 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHH
Q 009563 211 GPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMR 286 (532)
Q Consensus 211 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 286 (532)
|..+|++++++++.+..+|..+|.+.+..+. .|||.|+..+++++++.++..++++|++|- ..++..
T Consensus 151 ~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~---- 221 (493)
T KOG1330|consen 151 PDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVD---- 221 (493)
T ss_pred cchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc-----cccccc----
Confidence 9999999999999999999999999888877 599999999999999998889999987531 000000
Q ss_pred HHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHH-HHHHhh-
Q 009563 287 AIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSV-VYYGIS- 364 (532)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 364 (532)
++..+ ........++.+.+.+++.+....+......+.... .++...
T Consensus 222 ------~~~~~-------------------------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~ 270 (493)
T KOG1330|consen 222 ------GENKM-------------------------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAF 270 (493)
T ss_pred ------cCCcC-------------------------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhH
Confidence 00000 000111223445555555544444444444333221 111111
Q ss_pred ----hccccCcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhCCc----hhHH----HHH---HHHHHHHHHHHhhhccchh
Q 009563 365 ----LNVVNLQT-NLYLNVLVNAVAEMPAFTITAVLLDKLGRK----PMTI----GTL---WFSGFFCLLGSLVKNNGIW 428 (532)
Q Consensus 365 ----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~----~~~~----~~~---~~~~~~~~~~~~~~~~~~~ 428 (532)
+.+..... .......+...++.+|.+++|.++||+.|+ .... .+. .+.+.+..+.........
T Consensus 271 ~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~- 349 (493)
T KOG1330|consen 271 IYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSM- 349 (493)
T ss_pred HHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHH-
Confidence 11111122 222334455567788888999999984321 1111 111 111111222111122111
Q ss_pred HHHHHHHHHHHHH-HHHhhhhhHhhhccccccchhhhhHHHHHHHHHHH-HHHHHHHHH
Q 009563 429 KIVRMICGVMGIF-GVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQL-GAILAPFVV 485 (532)
Q Consensus 429 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~ 485 (532)
...+.+++.+. .....++...-+..|+.|++.|.++.++...+..+ |.+-+|++.
T Consensus 350 --~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~iv 406 (493)
T KOG1330|consen 350 --IFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIV 406 (493)
T ss_pred --HHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCccee
Confidence 22233333333 33334456667888999999999999999877654 444455343
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-27 Score=229.39 Aligned_cols=313 Identities=15% Similarity=0.087 Sum_probs=224.6
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|+ ++.+.+++.+++.++..++++++|+++|| +|||+++..+.++..++.++++++++++.+++.|+++|
T Consensus 30 ~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 105 (401)
T PRK11043 30 KAIQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQA 105 (401)
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 788999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+...+++.|+++++++++..+.......+|..++|.+++.+. +||+.|++.+++.++..+ ..++++|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~ 184 (401)
T PRK11043 106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLIL-PTLRLKPSK 184 (401)
T ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-HHHHcCCCC
Confidence 9988888888889999999999999999988889999999999998876 999999998888777663 344455443
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+. ++.+ +.+.+++++++++.++...+..
T Consensus 185 ~~----~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 212 (401)
T PRK11043 185 KA----RKQS------------------------------------------------QDALTFKQLLKSKTYLGNVLIF 212 (401)
T ss_pred Cc----cccc------------------------------------------------hHHHHHHHHHcChhHHHHHHHH
Confidence 10 0000 0001345566776655433322
Q ss_pred HHHHHHHHHHHHHhhhccccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh---h
Q 009563 350 VTINFLCSVVYYGISLNVVNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV---K 423 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~---~ 423 (532)
..............+.+..+.+.+. ........++.+++.++.+++.||+++|+..........++.+.+... .
T Consensus 213 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (401)
T PRK11043 213 AACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS 292 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222221111122233333333322 222333445667888889999999998887655544444433332221 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 424 NNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.... + ..++...+.+++.+..++.......+..| +.++++.|+.+.....++..++.+.
T Consensus 293 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~ 351 (401)
T PRK11043 293 HPSL-V-PLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLV 351 (401)
T ss_pred cCcH-H-HHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1 33444556677777888888887777776 4689999999998887777777776
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=229.66 Aligned_cols=345 Identities=14% Similarity=0.055 Sum_probs=229.7
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh---h-cchHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA---F-SPNYSTYVVLR 188 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r 188 (532)
+.+.+|+|+ +..+.|++.+.+.+++.+++++.|++.|| +|||+++..+.++.+++++++. + .++++.+++.|
T Consensus 37 ~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (402)
T TIGR00897 37 SPFLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY 112 (402)
T ss_pred HHHHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence 455688999 99999999999999999999999999999 9999999999999998877653 3 35788899999
Q ss_pred HHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHH-HHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcc
Q 009563 189 MLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGI-ALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 189 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
++.|++.+...+....++.+++|+++|++++++...+.++|. .+++.+++.+. ||+..+|......++..++..++
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 192 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFS 192 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999888888788888899999999999999999999997 57888887655 76655554443333333333444
Q ss_pred cccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHH
Q 009563 265 LPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRI 344 (532)
Q Consensus 265 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (532)
.++.++.. .+++. ++.+ +....++.++++|.++.
T Consensus 193 ~~~~~~~~-~~~~~--------------------------------------~~~~-------~~~~~~~~~~~~~~~~~ 226 (402)
T TIGR00897 193 NKDIFTPQ-HMQTR--------------------------------------EKFS-------ELGKAATILFTNPNVLL 226 (402)
T ss_pred cCCCCCcc-cccCC--------------------------------------cchh-------hHHHHHHHHHcChhHHH
Confidence 44432100 00000 0000 00113456778887665
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHH-HHHHHHHHHHHHHH
Q 009563 345 RLFLAVTINFLCSVVYYGISLNVVNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTI-GTLWFSGFFCLLGS 420 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~-~~~~~~~~~~~~~~ 420 (532)
..+..+..........+..+.+..+.+.+. ........++.+++.++.|++.||++||+.+. .+.+...++.+.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~ 306 (402)
T TIGR00897 227 GGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALY 306 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 444433333332222233344444443332 22334455778899999999999999887664 33333333333332
Q ss_pred hhhc--cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHH
Q 009563 421 LVKN--NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPF 493 (532)
Q Consensus 421 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~ 493 (532)
.... ....+ ..++..++.+++.+...+. .....|..| ++|+++.|+.+....+|+.++|.+. ..|+...+
T Consensus 307 ~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~ 383 (402)
T TIGR00897 307 YIPQHFGHSFA-VALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVV 383 (402)
T ss_pred HHHHccCCcHH-HHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 2211 11111 3344555566665554443 445566654 6899999999999999999999877 45667788
Q ss_pred HHHHHHHHHHHHHHhhc
Q 009563 494 AVFAACGIIGGLFAFYL 510 (532)
Q Consensus 494 ~~~~~~~~~~~~~~~~l 510 (532)
++.+++.+++.++..++
T Consensus 384 ~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 384 WIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888877777666554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-27 Score=228.68 Aligned_cols=315 Identities=14% Similarity=0.116 Sum_probs=223.4
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|+ |+.+.+++.+++.++..++++++|+++|| +|||+++..+.++..++.+++.++++++.+++.|++.|
T Consensus 32 ~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 107 (394)
T PRK11652 32 ADMARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQG 107 (394)
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 788999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+. +||+.|++.++..++..++..+++||++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 108 LGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred hhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 9998888888888899999999999999999999999999999988876 8999999988877766655566777764
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+.. ++..+ .+..+++.++++.++......
T Consensus 188 ~~~---~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 216 (394)
T PRK11652 188 PAD---ARRTR------------------------------------------------VLASYRTLLSNRRFNCYLLML 216 (394)
T ss_pred ccc---cchhH------------------------------------------------HHHHHHHHHcChHHHHHHHHH
Confidence 210 00000 011345566777655444333
Q ss_pred HHHHHHHHHHHHHhhhcccc-CcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH-HHHHHHHhhhc
Q 009563 350 VTINFLCSVVYYGISLNVVN-LQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSG-FFCLLGSLVKN 424 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~-~~~~~~~~~~~ 424 (532)
+.............+.+..+ .+.+. ........++.+++.++.+++.||++++........+.. +..........
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (394)
T PRK11652 217 IGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGV 296 (394)
T ss_pred HHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 32222222211112222222 22222 222333445566777777888888773322221221111 11111111111
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
...+ .......+.+++.+...+...++..|.+| +.++++.++.+....+|+.+++.+.
T Consensus 297 ~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 297 MNVW--TLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred ccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 34555677778888888999998889887 5679999999999999999999887
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=225.75 Aligned_cols=315 Identities=23% Similarity=0.285 Sum_probs=254.2
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|. +..+.+++.+.+.++..+++++.|+++|| +|||+.+..+.++..++.++..+.++++.+++.|++.|
T Consensus 23 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 98 (352)
T cd06174 23 PLLAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG 98 (352)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 777888899 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+. +||+.+++.+++.++..+.. .+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 174 (352)
T cd06174 99 LGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL-LFLL--- 174 (352)
T ss_pred cccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHH---
Confidence 9999999999999999999999999999999999999999999998887 79999999888877766333 2222
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
|..+...+..
T Consensus 175 ----------------------------------------------------------------------~~~~~~~~~~ 184 (352)
T cd06174 175 ----------------------------------------------------------------------RLLLLLALAF 184 (352)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 1122222222
Q ss_pred HHHHHHHHHHHHHhhhccccC----cchHHHHHHHHHHHHHHHHHHHHHHHhhhCCch-hHHHHHHHHHHHHHHHHhhhc
Q 009563 350 VTINFLCSVVYYGISLNVVNL----QTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKP-MTIGTLWFSGFFCLLGSLVKN 424 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~-~~~~~~~~~~~~~~~~~~~~~ 424 (532)
+.............+.+..+. ............++.+++.++.+++.||++||+ .+..+..+..++.+.+....+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 264 (352)
T cd06174 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS 264 (352)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 233333222222233322221 223344556667788899999999999999999 888888888888877776544
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHH
Q 009563 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAAC 499 (532)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~ 499 (532)
. + ...+..++.+++.+...+...++..|..|+++|++..|+.+....+|..++|.+. ..++...+++.+++
T Consensus 265 ~--~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~ 340 (352)
T cd06174 265 L--A--LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340 (352)
T ss_pred H--H--HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 2 1 5667778888888899999999999999999999999999999999999999887 23567778888888
Q ss_pred HHHHHHHHhh
Q 009563 500 GIIGGLFAFY 509 (532)
Q Consensus 500 ~~~~~~~~~~ 509 (532)
.+++.+...+
T Consensus 341 ~~i~~i~~~~ 350 (352)
T cd06174 341 ALLAALLLLL 350 (352)
T ss_pred HHHHHHHhee
Confidence 7777666544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-27 Score=228.55 Aligned_cols=335 Identities=12% Similarity=0.053 Sum_probs=237.9
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
+.+.+++|+ +..++|++.+.+.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|
T Consensus 32 ~~l~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 107 (395)
T PRK10054 32 IYLSRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALIN 107 (395)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456788999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhcccccCch
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILPFLPESPR 270 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 270 (532)
.+.+...+...++..|..|+++|+++.++.....++|.+++|.+++.+. +|+..|++.++..++..++..+++||+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 187 (395)
T PRK10054 108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEK 187 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888999999999999999999999999999999999999876 99999998888777765455555665421
Q ss_pred hHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHH
Q 009563 271 WYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAV 350 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (532)
. ++.++ . ...+.++.++++.++...+..+
T Consensus 188 ~----~~~~~-~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 216 (395)
T PRK10054 188 A----IATET-G----------------------------------------------SVWSPSVLLQDKALLWFTCSGF 216 (395)
T ss_pred c----cccch-h----------------------------------------------hhhhhhhhccCceehHHHHHHH
Confidence 0 00000 0 0001245567776655544444
Q ss_pred HHHHHHHHHHHHhhhcc---ccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhc
Q 009563 351 TINFLCSVVYYGISLNV---VNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKN 424 (532)
Q Consensus 351 ~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~ 424 (532)
+..+.........+.+. .+.+.+. .......++..+......+++.||.++|+.+..+..+..++...+.+..+
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 296 (395)
T PRK10054 217 LASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN 296 (395)
T ss_pred HHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch
Confidence 33333221111111111 1222212 12222333344455677889999999999888888777777665554322
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHH
Q 009563 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAAC 499 (532)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~ 499 (532)
+.+ ...+..++.+++.....|.....+.+..|++.++++.+..+ ...+|..+||.+. ..++...|++.+.+
T Consensus 297 -~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~ 372 (395)
T PRK10054 297 -SLL--LWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALA 372 (395)
T ss_pred -HHH--HHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHH
Confidence 211 33455667777777777888889999999999999988765 5668888998877 33455555555544
Q ss_pred HHHHHHH
Q 009563 500 GIIGGLF 506 (532)
Q Consensus 500 ~~~~~~~ 506 (532)
..++.++
T Consensus 373 ~~~~~~~ 379 (395)
T PRK10054 373 IVAAWLL 379 (395)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=225.59 Aligned_cols=313 Identities=13% Similarity=0.039 Sum_probs=225.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
+.+++++|+ |..++|++.+.+.++..+.+++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+++|
T Consensus 35 ~~~~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 110 (400)
T PRK11646 35 IRFVDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSG 110 (400)
T ss_pred HHHHHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 356788999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhcccccCch
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILPFLPESPR 270 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 270 (532)
++.+...+...+++.|++|+++|+++.++......+|..+||.+++.+. +||+.|++.++..++..++..+++||.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 190 (400)
T PRK11646 111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKL 190 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 9999888989999999999999999999999999999999999998887 99999999888777665454555554210
Q ss_pred hHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHH
Q 009563 271 WYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAV 350 (532)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (532)
+.+.+ +.+.+++++++++.++.......
T Consensus 191 ----~~~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 218 (400)
T PRK11646 191 ----STVRT------------------------------------------------PVREGMTRVLRDKRFVTYVLTLT 218 (400)
T ss_pred ----cccch------------------------------------------------hhHHHHHHHHcCchHHHHHHHHH
Confidence 00000 00013445667766543333222
Q ss_pred HHHHHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHH-hhhCCchhHHHHHHHHHHHHHHHHhhhccc
Q 009563 351 TINFLCSVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLL-DKLGRKPMTIGTLWFSGFFCLLGSLVKNNG 426 (532)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~-d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (532)
.............+.+.++...+ ........++....+....+++. ||++.++.+..+..+.+++.+++...++.
T Consensus 219 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~- 297 (400)
T PRK11646 219 GYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNL- 297 (400)
T ss_pred HHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhH-
Confidence 22222211222334444332222 22222223333333334445555 45665666666666666666655544332
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 427 IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+ ...+...+.+.+.+...|...+++.+..|++.|+++.|+.+....+|..++|.+.
T Consensus 298 -~--~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~ 353 (400)
T PRK11646 298 -Q--QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGG 353 (400)
T ss_pred -H--HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccch
Confidence 1 3334445566677777788889999999999999999999999999999998777
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=229.66 Aligned_cols=346 Identities=13% Similarity=0.079 Sum_probs=232.4
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-----CchHH-HHHHHHHHHHHHHHHhhc---chHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-----GRKGS-LTVVCMMNAVFGCLTAFS---PNYST 183 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~ 183 (532)
|...++.|. +..++|.+ +.....+ ++.+++|+++|| + |||+. +..+.++.+++.++.++. ++++.
T Consensus 36 ~~~l~~~g~---~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~ 109 (491)
T PRK11010 36 QAWMTVENI---DLKTIGFF-SLVGQAY-VFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRW 109 (491)
T ss_pred HHHHHhCCC---CHHHHHHH-HHHHHHH-HHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 667777888 88899986 4444444 689999999999 9 99985 667777777777777765 47889
Q ss_pred HHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHH
Q 009563 184 YVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLL 259 (532)
Q Consensus 184 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~ 259 (532)
+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+. |||..|++.++..++..
T Consensus 110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~- 188 (491)
T PRK11010 110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCI- 188 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999998877764 89999999988877765
Q ss_pred HHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcC
Q 009563 260 IILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKS 339 (532)
Q Consensus 260 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (532)
+..+++||+++.. ++.++.. +....++++.+++
T Consensus 189 l~~~~~~e~~~~~---~~~~~~~--------------------------------------------~~~~~~l~~~~~~ 221 (491)
T PRK11010 189 IATLLAPEPTDTI---PVPKTLE--------------------------------------------QAVVAPLRDFFGR 221 (491)
T ss_pred HHHHhcCCCcccc---ccccchh--------------------------------------------hhHHHHHHHHHcC
Confidence 4444578764210 0000000 0001134456666
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHhhhccccCcchHH---HHH-HHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 009563 340 PLTRIRLFLAVTINFLCSVVY-YGISLNVVNLQTNLY---LNV-LVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGF 414 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~ 414 (532)
+..+......+.........+ +..++.....+.+.. ... ....++.+++.+++|++.||+++|+.+.++..+.++
T Consensus 222 ~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l 301 (491)
T PRK11010 222 NNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGV 301 (491)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 555444333333333322222 223332233333222 222 233457789999999999999998877766655554
Q ss_pred HHHHHHhh-hccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh
Q 009563 415 FCLLGSLV-KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG 488 (532)
Q Consensus 415 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~ 488 (532)
..+.+... ......+ ...+..++..+..+...+...++..+..+++.+++..|+.+....+|..+++.+. ..|
T Consensus 302 ~~l~~~~l~~~~~~~~-~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G 380 (491)
T PRK11010 302 SNAGYWLLSITDKNLY-SMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG 380 (491)
T ss_pred HHHHHHHHHhccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44333221 1111111 2233344444444555566678888888888889999999998888877665554 456
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCC
Q 009563 489 GWLPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
+...|.+.+++.+++.+....++++
T Consensus 381 ~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 381 WPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777888888888877776666543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-26 Score=223.46 Aligned_cols=311 Identities=14% Similarity=0.058 Sum_probs=229.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF---SPNYSTYVVLRM 189 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~ 189 (532)
|.+++++|+ +..+.|++.+.+++++.+++++.|++.|| +|||+++.++.++++++.+++.. .++++.+++.|+
T Consensus 27 ~~~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~ 102 (410)
T TIGR00885 27 PQFQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLF 102 (410)
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 899999999 99999999999999999999999999999 99999999999999999988654 468999999999
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----------------------------
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---------------------------- 241 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---------------------------- 241 (532)
+.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.++..+.
T Consensus 103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (410)
T TIGR00885 103 ILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDL 182 (410)
T ss_pred HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877652
Q ss_pred -chHHHHHHHHHHHHHHHHHHhc-ccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccch
Q 009563 242 -TWRALYIASSIPSILFLLIILP-FLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNY 319 (532)
Q Consensus 242 -~wr~~f~~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (532)
+||++|++.+++.++..++..+ ..||.++ ++ ++
T Consensus 183 ~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~--------------------------------------- 217 (410)
T TIGR00885 183 ASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK--------------------------------------- 217 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc---------------------------------------
Confidence 4999999988877765533321 1332110 00 00
Q ss_pred hhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccccC--cchH---HHHHHHHHHHHHHHHHHHHH
Q 009563 320 KEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNL--QTNL---YLNVLVNAVAEMPAFTITAV 394 (532)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~ 394 (532)
+.......++++|+|.++...+..+++..........++.+.... +.+. ............+|++++++
T Consensus 218 ------~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~ 291 (410)
T TIGR00885 218 ------QISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTW 291 (410)
T ss_pred ------cccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001234566777766655544444333322222233332221 1111 11122223456789999999
Q ss_pred HHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHH
Q 009563 395 LLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAA 474 (532)
Q Consensus 395 l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 474 (532)
+.||+++|+++.+...+..+.+++.....+. .......+.+++.+..+|..++...+..+++.+..+.++....
T Consensus 292 l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~-----~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~- 365 (410)
T TIGR00885 292 LISYLAAHKVLMAYAIIGMALCLGSIFAGGH-----VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI- 365 (410)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-
Confidence 9999999999888888888877777664432 2356666777888899999999999999887765555555544
Q ss_pred HHHHHHHHHHH
Q 009563 475 QLGAILAPFVV 485 (532)
Q Consensus 475 ~~g~~i~p~~~ 485 (532)
+|+.+.|.+.
T Consensus 366 -~Gga~~p~l~ 375 (410)
T TIGR00885 366 -IGGGIVPPLQ 375 (410)
T ss_pred -hccchHHHHH
Confidence 8888898887
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=228.85 Aligned_cols=310 Identities=21% Similarity=0.276 Sum_probs=206.4
Q ss_pred hhhHHHHHHHH-----HHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHH--------HHHHHHHHH
Q 009563 125 EKYKVGLVQAL-----FFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYS--------TYVVLRMLT 191 (532)
Q Consensus 125 s~~~~~~~~s~-----~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~ 191 (532)
++.+.+.+.+. .+++..+++++.|+++|| +|||+++..+.++..++.++++++++++ .+++.|+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 28 GDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 44555554433 334445789999999999 9999999999999999999999999875 488999999
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh---------h--chHHHHHHHHHHHHHHHHH
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF---------Q--TWRALYIASSIPSILFLLI 260 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---------~--~wr~~f~~~~~~~~~~~~~ 260 (532)
|++.+...+....++.|++++++|++..++...+..+|.++++.++..+ . +||+.|++.+++.++.. +
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~ 185 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL-Y 185 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH-H
Confidence 9999999999999999999999999999999999999999998876543 1 89999998777665544 4
Q ss_pred HhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcCh
Q 009563 261 ILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSP 340 (532)
Q Consensus 261 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (532)
....+||+|++...++ + .+..+.+.++.++++
T Consensus 186 ~~~~~~~~~~~~~~~~----------------~--------------------------------~~~~~~~~~~~~~~~ 217 (394)
T TIGR00883 186 LRRNLEETPVFEKAQE----------------K--------------------------------HKKKRGPIRETLTKH 217 (394)
T ss_pred HHHhcCCChhHHHHHh----------------c--------------------------------cccccCCHHHHHHhc
Confidence 4455666543110000 0 000011334444444
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHhhhcc-ccCc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 009563 341 L--TRIRLFLAVTINFLCSVVYYGISLNV-VNLQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGF 414 (532)
Q Consensus 341 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~ 414 (532)
. ++......+.............+.+. ...+ ...........+..+++.++.+++.||+|||+.+.....+..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAAL 297 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3 22222222222222222222223332 2222 2233334455667788899999999999999987755544443
Q ss_pred HH-HHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHH-HHHHHHHHHHHHHH
Q 009563 415 FC-LLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCAT-QAAQLGAILAPFVV 485 (532)
Q Consensus 415 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~i~p~~~ 485 (532)
.. ..+.........+ .......+.+++.+...+...+++.|.+|++.|+++.++.+ ....+|..++|.+.
T Consensus 298 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~ 369 (394)
T TIGR00883 298 LAVPLLMALLDSGSFT-LFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA 369 (394)
T ss_pred HHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH
Confidence 33 2222221111111 34455566677777888889999999999999999999854 44557777888777
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=229.07 Aligned_cols=320 Identities=14% Similarity=0.076 Sum_probs=215.6
Q ss_pred Cc-eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHH
Q 009563 113 SS-TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP-NYSTYVVLRML 190 (532)
Q Consensus 113 ~~-i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l 190 (532)
|. +++++|+ |..+.+++.+++.+++.+++++.|+++|| +|||+.+.++.++..++.+++++++ +++.+++.|++
T Consensus 25 ~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T TIGR00886 25 VQMIKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLF 100 (366)
T ss_pred hHHHHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 74 8899999 99999999999999999999999999999 9999999999999999999999999 99999999999
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-------------chHHHH-HHHHHHHHH
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-------------TWRALY-IASSIPSIL 256 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-------------~wr~~f-~~~~~~~~~ 256 (532)
+|++.+. .+....++.|++|+++|+++.++...+.++|..+++.+++.+. +||+.| +..+++..+
T Consensus 101 ~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 179 (366)
T TIGR00886 101 IGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLL 179 (366)
T ss_pred HHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Confidence 9998654 5667889999999999999999998777777766666554332 699999 444555555
Q ss_pred HHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhh
Q 009563 257 FLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDV 336 (532)
Q Consensus 257 ~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (532)
..++.+.+.+|.|+.. + ++.+. +.+ .+. . ..++ ......++.
T Consensus 180 ~~~~~~~~~~~~~~~~----~-~~~~~--------~~~---~~~-------~-----~~~~----------~~~~~~~~~ 221 (366)
T TIGR00886 180 PALLIFFVGADTPPGK----P-ATGKL--------SFK---GAR-------W-----SVGT----------GALGDQLKV 221 (366)
T ss_pred HHHHHHHhcccCCccc----c-cchhc--------ccc---ccc-------c-----cccc----------hhHHHHHHH
Confidence 5545556667765310 0 00000 000 000 0 0000 000133456
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHhhhccc-cCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 009563 337 IKSPLTRIRLFLAVTINFLCSVVYYGISLNVV-NLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFS 412 (532)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~ 412 (532)
++++..+...+................+.+.. ..+. ..........+..+++.++.+++.||+++|+.+..+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 301 (366)
T TIGR00886 222 FRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGV 301 (366)
T ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHH
Confidence 66666554444333332222222222222322 2222 2233344455667788999999999999998877776666
Q ss_pred HHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHH
Q 009563 413 GFFCLLGSLVKNNG-IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLG 477 (532)
Q Consensus 413 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g 477 (532)
..+..++.+..... ..+ ..++...+..+..+...+..+..+.+..| +++|++.|+.+..+++|
T Consensus 302 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 302 AMGAFLVVLGLVSPLSLA-VFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHhcCCCcchHH-HHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 66555554433321 111 33444455556666666777888888887 58899999999888765
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=218.83 Aligned_cols=345 Identities=10% Similarity=0.014 Sum_probs=230.7
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGR-KGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 191 (532)
+.+.+++|+ +..|+|++.+++.++..++++++|.++|| +|| |+++.++.++..++..+..+.++++.+++.|++.
T Consensus 27 ~~l~~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (418)
T TIGR00889 27 SYMSKTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN 102 (418)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 567788999 99999999999999999999999999999 865 7888989999989998999999999999999999
Q ss_pred Hhhccccchhhhhee----e----cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHH
Q 009563 192 GFSTGGVGLCAFVLA----T----EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLI 260 (532)
Q Consensus 192 G~~~~~~~~~~~~~i----~----~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~ 260 (532)
|++.+...+...+.. . |......|.+..+ .+|.++++.+++.+. .|+ +|++.++..++.. +
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~-~ 174 (418)
T TIGR00889 103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG-V 174 (418)
T ss_pred HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH-H
Confidence 998777766554432 1 2232233444444 367777777777664 344 4556666666655 4
Q ss_pred HhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcCh
Q 009563 261 ILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSP 340 (532)
Q Consensus 261 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (532)
..+++||+|+. +++.+.. .++..+.+.++++|+|
T Consensus 175 ~~~~~~e~~~~---~~~~~~~-------------------------------------------~~~~~~~~~~~~~k~~ 208 (418)
T TIGR00889 175 FALTLPDIPVA---KSTAKMS-------------------------------------------IKVMLGLDAFILFKNK 208 (418)
T ss_pred HHhcCCCCCCC---ccccccC-------------------------------------------HHHHhhhhHHHHhcCC
Confidence 45677887531 0000000 0000011234566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCc-----------chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 009563 341 LTRIRLFLAVTINFLCSVVYYGISLNVVNLQ-----------TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTL 409 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~ 409 (532)
.++..++..++........+...+.+..+.+ ...........+..+++.+..+++.||+|+|+++..+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~ 288 (418)
T TIGR00889 209 RMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSL 288 (418)
T ss_pred CeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 6555444444443333222222222222221 12234445555677788899999999999999999999
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHH-HHHHHHHHHHHHHH---
Q 009563 410 WFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCAT-QAAQLGAILAPFVV--- 485 (532)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~i~p~~~--- 485 (532)
++..+...++.............++..++.+++.+...+....++.|.+|++.|+++.|+.+ ....+|.+++|.+.
T Consensus 289 ~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l 368 (418)
T TIGR00889 289 VAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM 368 (418)
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888776665532222111134556677777777777888899999999999999999997 56778888888887
Q ss_pred --H------hhhhhHHHHHHHHHHHHHHHH-hhccCCCC
Q 009563 486 --V------LGGWLPFAVFAACGIIGGLFA-FYLPETLN 515 (532)
Q Consensus 486 --~------~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 515 (532)
. .++...|.+.+++.+++.++. ++++|+++
T Consensus 369 ~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 369 VEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 2 235567777777766665554 55666544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=213.27 Aligned_cols=336 Identities=14% Similarity=0.117 Sum_probs=214.9
Q ss_pred CceeecccccchhhhHHHHHHHHHHH-HHHHHHHHHHhhccCCCCchHHH-HHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFF-GCMIGAGVFGHLSDSRLGRKGSL-TVVCMMNAVFGCLTAFSPNYSTYVVLRML 190 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 190 (532)
+.+.+++|+ +..++|++.+...+ +..++.++.++ +|| +|||+.+ ..+.++.+++..+.+++++++.+++.+.+
T Consensus 40 ~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (393)
T PRK15011 40 IFLTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVF 114 (393)
T ss_pred HHHHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456789999 99999999876655 66666666666 999 9999875 45566667788888899999988766655
Q ss_pred HHhhccccchhhhheeecccCCCch--hHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccc
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKR--GAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
.|...+...+....++.|+.++++| +...++.+.+.++|.+++|++++.+. |||..|++.++..++..++.++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 194 (393)
T PRK15011 115 LSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFL 194 (393)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhc
Confidence 5554556778888888888776655 34557888899999999999999886 999999999988887776667778
Q ss_pred ccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcC-hHHHH
Q 009563 266 PESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKS-PLTRI 344 (532)
Q Consensus 266 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 344 (532)
||.++. +++ ++ + ..+ ..+ ++ +..+.
T Consensus 195 ~~~~~~---~~~-~~-----------------~----------------~~~--------------~~~---~~~~~~~~ 220 (393)
T PRK15011 195 PSMRKE---LPL-AT-----------------G----------------TLE--------------APR---RNRRDTLL 220 (393)
T ss_pred CccCCC---Ccc-cc-----------------c----------------ccc--------------ccc---cccccHHH
Confidence 876421 000 00 0 000 000 01 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-ccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 009563 345 RLFLAVTINFLCSVVYYGISLNV-VNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGS 420 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~ 420 (532)
.+......+..........+.+. +..+.+. ........+..+++.++.|+++||++||+.+..+.....+....+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~ 300 (393)
T PRK15011 221 LFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML 300 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222233332 2222222 2222333455667889999999999999887766555544443332
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHH
Q 009563 421 LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAV 495 (532)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~ 495 (532)
... ..+ ..++..++.++..+...+....+..|.+|+ .++++.++.+...++|..++|.+. ..++...+.+
T Consensus 301 ~~~--~~~--~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~ 375 (393)
T PRK15011 301 MAH--SPA--ILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWF 375 (393)
T ss_pred HHh--hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 222 121 233344444445555555666777888886 489999999888889988888777 3456667777
Q ss_pred HHHHHHHHHHHHhhccC
Q 009563 496 FAACGIIGGLFAFYLPE 512 (532)
Q Consensus 496 ~~~~~~~~~~~~~~l~~ 512 (532)
.+++.+++.+..+.+||
T Consensus 376 ~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 376 ALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 77777776666666654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-25 Score=213.39 Aligned_cols=312 Identities=13% Similarity=0.076 Sum_probs=222.0
Q ss_pred CCCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Q 009563 110 GDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRM 189 (532)
Q Consensus 110 ~~~~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 189 (532)
|.+|.+.+++|+ +..+.|++.+.+.+++.+++++.|+++|| +|||+++.++.++..++.+++ .+++++.+++.|+
T Consensus 21 ~~lp~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 21 PLLPQIRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 345899999999 99999999999999999999999999999 999999999999988888877 7789999999999
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHhcc
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
+.|++.+...+....++.|+++ ++|+++.++...+.++|..+++.+++.+. +||+.|.+.++..++.. ..+
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~---~~~ 171 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL---LAW 171 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHH
Confidence 9999999888888888889886 68999999999999999999988877664 39999887766544332 223
Q ss_pred cccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHH
Q 009563 265 LPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRI 344 (532)
Q Consensus 265 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (532)
+|+.++. ++ ++ . ...+...++.+|++..+.
T Consensus 172 ~~~~~~~----~~-------------------~~----------------~-----------~~~~~~~~~~~~~~~~~~ 201 (355)
T TIGR00896 172 IPQVRRR----VA-------------------AN----------------Q-----------TTTRLTPVRIWRSPLAWQ 201 (355)
T ss_pred hhhhccc----cC-------------------CC----------------C-----------CCCCCCCchhhcCHhHHH
Confidence 3443210 00 00 0 000012345667776654
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHH
Q 009563 345 RLFLAVTINFLCSVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKL-GRKPMTIGTLWFSGFFCLLGS 420 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~-gr~~~~~~~~~~~~~~~~~~~ 420 (532)
..+...+............+.+..+.+.+ .........++.+++.++.+++.||+ +||+.+..+..+.+++.+.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T TIGR00896 202 VTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL 281 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 43333332232222222234333333332 23344556678889999999999999 566666677777776666555
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccc-cchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 421 LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELF-PTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+...... . ...++.+++.+..++...+.+.+.. +++.++...++.+....++..++|.+.
T Consensus 282 ~~~~~~~----~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~ 342 (355)
T TIGR00896 282 FAPMHGL----W-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFV 342 (355)
T ss_pred HhhhhHH----H-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443221 1 2345677888888887766665544 456778999999988899988998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=212.69 Aligned_cols=331 Identities=11% Similarity=-0.027 Sum_probs=236.0
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHH----HHHHHHHHHHHHHHhhcchHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSL----TVVCMMNAVFGCLTAFSPNYSTYVVLR 188 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r 188 (532)
|.+.+++|+ |..++|++.+++.++..++++++|+++|| +|||... ..+..+..+ ..+..+++++.+++.|
T Consensus 28 ~~~l~~~g~---s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~ 101 (382)
T TIGR00902 28 PAWLKGIGL---GEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAI 101 (382)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHH
Confidence 788899999 99999999999999999999999999999 8985433 233222222 2445678999999999
Q ss_pred HHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccc
Q 009563 189 MLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 189 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
+++|.+.+...|...++..++ +++|++..+....+.++|.++++.+++.+. |||..|++.++..++.. +. +.+
T Consensus 102 ~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~-~~~ 177 (382)
T TIGR00902 102 GLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IG-FLI 177 (382)
T ss_pred HHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HH-HHc
Confidence 999999988888888887664 477899999999999999999999988887 99999988765533322 22 233
Q ss_pred ccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHH
Q 009563 266 PESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIR 345 (532)
Q Consensus 266 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (532)
+|+++. +++ ++ + ++.....+.++++|+|.++..
T Consensus 178 ~~~~~~---~~~-~~---------------------------------~----------~~~~~~~~~~~~l~~~~~~~~ 210 (382)
T TIGR00902 178 KPTIPP---KDA-IP---------------------------------E----------DESQGDSAFIALLKNPMNLRF 210 (382)
T ss_pred CCCCCC---Ccc-cc---------------------------------c----------cccccchhHHHHHcChHHHHH
Confidence 333210 000 00 0 000011245678899887776
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh
Q 009563 346 LFLAVTINFLCSVVYYGISLNVVNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV 422 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~ 422 (532)
.+..++........+...+.+.++.+.+. ........+..+++.++.+++.||+++|+.+.++.+...+....+.+.
T Consensus 211 l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T TIGR00902 211 LAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 66666555554444444444444444433 233344556677888899999999999999999999998888877664
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHH-HHHHHHHHHHHHH-----HhhhhhHHHHH
Q 009563 423 KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQ-AAQLGAILAPFVV-----VLGGWLPFAVF 496 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~g~~i~p~~~-----~~~~~~~~~~~ 496 (532)
++.. ..+....+.++..+...+....++.+. |++.++++.++++. ...+|..++|.+. ..+ ...|.+.
T Consensus 291 ~~~~----~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~~~~~~~ 364 (382)
T TIGR00902 291 EAFP----LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-AGTFVFM 364 (382)
T ss_pred hhHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHH
Confidence 4332 456678888999999999999999988 99999999999874 4567777787777 233 3456666
Q ss_pred HHHHHHHHHH
Q 009563 497 AACGIIGGLF 506 (532)
Q Consensus 497 ~~~~~~~~~~ 506 (532)
+++.+++.++
T Consensus 365 ~~~~~~~~~~ 374 (382)
T TIGR00902 365 AIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHH
Confidence 6666655433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-26 Score=224.04 Aligned_cols=414 Identities=14% Similarity=0.127 Sum_probs=286.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
|.+.|-|.+.+..++..+...-.....+.. . +.++++|+. +..
T Consensus 39 PdGG~gWvV~~a~fl~~~~~~g~~~~~Gv~--------~--------------------------~~~~~~f~~---s~~ 81 (509)
T KOG2504|consen 39 PDGGWGWVVVFASFLVNLSTDGLINSFGLL--------F--------------------------EELMDYFGS---SSS 81 (509)
T ss_pred CCCCeeeeeeHhHHHHHHhhhcchheehhh--------H--------------------------HHHHHHhCC---Ccc
Confidence 467788888887777665444433444433 2 789999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHhhccccchhhhhee
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVL-RMLTGFSTGGVGLCAFVLA 206 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i 206 (532)
+++|+.++......+..++.+.+.|| ||.|.+.++|.++.+++.++.+|+++++++++. -++.|+|.|..+..+..++
T Consensus 82 ~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv 160 (509)
T KOG2504|consen 82 QIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVIL 160 (509)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhh
Confidence 99999999999999999999999999 999999999999999999999999999887665 6888999999999999999
Q ss_pred ecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHH
Q 009563 207 TEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMK 283 (532)
Q Consensus 207 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~ 283 (532)
..|+ +|+|+.+.|+...+.++|..+-|.+...+. |||+.+++.+.+.+-..+.....-|.++..... .++..
T Consensus 161 ~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~- 235 (509)
T KOG2504|consen 161 GTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDL- 235 (509)
T ss_pred hhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhh-
Confidence 9877 588999999999999999998888877776 999999999988877775555555544431111 11100
Q ss_pred HHHHHHHHhCCCCCccccccchhhhhhhhh---cCccchhhhhhhhh--ccccc----hhhhhcChHHHHHHHHHHHHHH
Q 009563 284 IMRAIAKSNGRHLPDGVVLMLDDEQENDAS---NGKQNYKEELATKE--AVTGS----VIDVIKSPLTRIRLFLAVTINF 354 (532)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 354 (532)
+.. ....+..+........+....... ......+...+..+ ..+.. -.++++++.++...+...+..+
T Consensus 236 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~ 312 (509)
T KOG2504|consen 236 --RNS-AASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL 312 (509)
T ss_pred --ccc-cccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH
Confidence 000 000000000000000000000000 00000000000000 11111 2578888876665555555555
Q ss_pred HHHHHHHHhhhccccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCc--hhHHHHHHHHHHHHHHHHhhhccchhH
Q 009563 355 LCSVVYYGISLNVVNLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRK--PMTIGTLWFSGFFCLLGSLVKNNGIWK 429 (532)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (532)
.....++.++.+....+. +........++..+++.++.|++.|+...+ .+..++.++.+++.+...+..+..
T Consensus 313 g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~--- 389 (509)
T KOG2504|consen 313 GFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV--- 389 (509)
T ss_pred HHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH---
Confidence 555555555555444433 344555667788899999999999998744 344455555555554444443332
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh-hhhHHHHHHHHHHHH
Q 009563 430 IVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG-GWLPFAVFAACGIIG 503 (532)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~-~~~~~~~~~~~~~~~ 503 (532)
.++...+++++..+.........+.|+.+.+.-..+.|+...+..++..+||.+. ..+ +...|+..+++.+++
T Consensus 390 -~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s 468 (509)
T KOG2504|consen 390 -GLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLS 468 (509)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHH
Confidence 5677778888888888888888999999999999999999999999999999888 334 778889999888888
Q ss_pred HHHHhhcc
Q 009563 504 GLFAFYLP 511 (532)
Q Consensus 504 ~~~~~~l~ 511 (532)
..+.+..+
T Consensus 469 ~~~~~~~~ 476 (509)
T KOG2504|consen 469 AVLLLILR 476 (509)
T ss_pred HHHHHHhH
Confidence 87776665
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-24 Score=207.98 Aligned_cols=345 Identities=15% Similarity=0.092 Sum_probs=228.9
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-----CchH-HHHHHHHHHHHHHHHHhhc---chHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-----GRKG-SLTVVCMMNAVFGCLTAFS---PNYST 183 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-----Grr~-~l~~~~~~~~~~~~~~~~~---~~~~~ 183 (532)
|..-++.|+ |.+++|++..+... .+..+++|+++|| + |||| .+.++.++.+++..+.++. ++++.
T Consensus 23 ~~~l~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~ 96 (402)
T PRK11902 23 QAWMTVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWP 96 (402)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 667778899 99999999777776 5899999999999 8 8875 7888888888888877776 35777
Q ss_pred HHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHH
Q 009563 184 YVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLL 259 (532)
Q Consensus 184 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~ 259 (532)
+++..++.++..+...+...+++.|+.|+++|+++.++...+..+|.++++.++..+. |||..|++.++..++..
T Consensus 97 l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~- 175 (402)
T PRK11902 97 LAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA- 175 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH-
Confidence 8888888898889999999999999999999999999999999999999988877764 89999999888877655
Q ss_pred HHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcC
Q 009563 260 IILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKS 339 (532)
Q Consensus 260 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (532)
+..+++||+++.. ++.++.. ++....+++++++
T Consensus 176 l~~~~~~e~~~~~---~~~~~~~--------------------------------------------~~~~~~~~~l~~~ 208 (402)
T PRK11902 176 LTTLWAPEPEVPA---RPPRSLG--------------------------------------------EAVVGPLRDFFSR 208 (402)
T ss_pred HHHHhcCCCcccc---cccchhH--------------------------------------------HHHHHHHHHHHhC
Confidence 4455667754310 0000000 0011245677888
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHhhhccccCcchHHHHHH---HH-HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 009563 340 PLTRIRLFLAVTINFLCSVV-YYGISLNVVNLQTNLYLNVL---VN-AVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGF 414 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~ 414 (532)
|.++..+...++........ .+..++.....+.+...... .. .++.+++.++++++.||+++|+.+..+..+..+
T Consensus 209 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l 288 (402)
T PRK11902 209 RGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAV 288 (402)
T ss_pred cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 87665554444443332221 12222333333333322222 22 234678899999999999999888776666555
Q ss_pred HHHHHHhh-h-ccchhHHHHHHHH----HHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-Hh
Q 009563 415 FCLLGSLV-K-NNGIWKIVRMICG----VMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-VL 487 (532)
Q Consensus 415 ~~~~~~~~-~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-~~ 487 (532)
..+.+... . ..+.+ ...+.. +..+++.+..++....++.+.+|.+.++...++.......++.++..+. ..
T Consensus 289 ~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~ 366 (402)
T PRK11902 289 SNLGYWVLAVTPKHLW--TMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAY 366 (402)
T ss_pred HHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54433221 1 12221 222222 3455666667778888889888877665433333222222333343333 67
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccCC
Q 009563 488 GGWLPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
|+...|.+.+++.+++.++....+.+
T Consensus 367 G~~~~f~~~~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 367 GWPGFYLMTVVIALPGLALLWLMRGT 392 (402)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 78888888888887776666555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-25 Score=211.68 Aligned_cols=311 Identities=11% Similarity=0.072 Sum_probs=216.6
Q ss_pred CCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-----CchHH-HHHHHHHHHHHHHHHhhc---chHH
Q 009563 112 GSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-----GRKGS-LTVVCMMNAVFGCLTAFS---PNYS 182 (532)
Q Consensus 112 ~~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~ 182 (532)
.|.+.+|+|+ |.+++|+..+. .+...+ .+++|+++|| + ||||. ++.+.++.+++..+.++. .+.+
T Consensus 11 ~~~~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr-~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~ 84 (356)
T TIGR00901 11 LPYWLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDT-VYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLP 84 (356)
T ss_pred HHHHHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhc-ccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 3788999999 99999999765 555555 9999999999 7 89886 567777777777777777 4666
Q ss_pred HHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---c--------hHHHHHHHH
Q 009563 183 TYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---T--------WRALYIASS 251 (532)
Q Consensus 183 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~--------wr~~f~~~~ 251 (532)
.+....++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. + ||..|++.+
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~a 164 (356)
T TIGR00901 85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTA 164 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence 77788888899888888999999999999999999999999999999999999988775 6 999999999
Q ss_pred HHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhcccc
Q 009563 252 IPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTG 331 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (532)
+..++..++.++..||+++. +.+.++.. ++.+.
T Consensus 165 i~~l~~~~~~~~~~~e~~~~---~~~~~~~~--------------------------------------------~~~~~ 197 (356)
T TIGR00901 165 LLILPGLLVTLFLAKEPQED---ASVPKPLT--------------------------------------------QAVLK 197 (356)
T ss_pred HHHHHHHHHHHHhccCCCcc---cccchhHH--------------------------------------------HHHHH
Confidence 88777664444456664320 00000000 00011
Q ss_pred chhhhhcChH---HHHHHHHHHHHHHHHHHHHHHhhhccccCcchHHHH---HHHHH-HHHHHHHHHHHHHHhhhCCchh
Q 009563 332 SVIDVIKSPL---TRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLN---VLVNA-VAEMPAFTITAVLLDKLGRKPM 404 (532)
Q Consensus 332 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~l~d~~gr~~~ 404 (532)
.++++++++. .+......++............+.+..+.+.+.... ....+ +..+++.++++++.||+|||+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~ 277 (356)
T TIGR00901 198 PIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA 277 (356)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3445555553 333333333333333333323333333333333222 22222 4567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccc-------hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHH
Q 009563 405 TIGTLWFSGFFCLLGSLVKNNG-------IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQ 475 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 475 (532)
+..+.++.++...++.+..... ...+......++.+++.+...+...++..|.+|++.||+.+|+.++..+
T Consensus 278 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 278 LLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 8888877777666555432111 1111455566677888889999999999999999999999999887654
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=215.03 Aligned_cols=342 Identities=15% Similarity=0.097 Sum_probs=212.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh---hcc-----hHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA---FSP-----NYSTY 184 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~l 184 (532)
..+.+++|+ |..+.|++.+++.++..++++++|+++|| +|||++++++..+.+++..... .++ .....
T Consensus 35 ~~l~~~~g~---s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (420)
T PRK09528 35 IWLHDINGL---SGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGA 110 (420)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667999 99999999999999999999999999999 9999999887666555433221 111 11112
Q ss_pred HHHHHHHHhhccccchhhhheeecccC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHH
Q 009563 185 VVLRMLTGFSTGGVGLCAFVLATEPVG--PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLI 260 (532)
Q Consensus 185 ~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~ 260 (532)
++++++.|.+.....+. +.++.+ .+++++.++......++|..+++.+++.+. +|++.|++.+++.++..++
T Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~ 186 (420)
T PRK09528 111 IVGGIYLGFGFLAGAGA----IEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVL 186 (420)
T ss_pred HHHHHHhhhhhccchhh----hhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHH
Confidence 23333344333333332 333332 345677888888889999999999998876 9999999988887776644
Q ss_pred HhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcCh
Q 009563 261 ILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSP 340 (532)
Q Consensus 261 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (532)
.++..+|.++....+ ++. ++ +. ++......++.+|+|
T Consensus 187 ~~~~~~~~~~~~~~~---~~~--------------------------~~----~~----------~~~~~~~~~~~l~~~ 223 (420)
T PRK09528 187 LFFAKPDAPSTAKVA---NAL--------------------------GA----NA----------SAVSLKDALALLKLP 223 (420)
T ss_pred Hhcccccccchhhhc---cch--------------------------hc----cc----------ccccHHHHHHHccCC
Confidence 444444433200000 000 00 00 000011234566666
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHhhhccc-cCc-chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 009563 341 LTRIRLFLAVTINFLC-----SVVYYGISLNVV-NLQ-TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSG 413 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~ 413 (532)
.++...+......... ....|....... ..+ ...........+...++.++.+++.||+++|+.+..+.++..
T Consensus 224 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~ 303 (420)
T PRK09528 224 KFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMA 303 (420)
T ss_pred CeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 5543333222222211 112222222111 111 112233344456667889999999999999999888888888
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHH-HHHHHHHHHHHHHHHH-----Hh
Q 009563 414 FFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGC-ATQAAQLGAILAPFVV-----VL 487 (532)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~i~p~~~-----~~ 487 (532)
+..+++.+..+. + ..++..++.+++.+...+....++.+.+|++.+++..+. .++...+|.+++|.+. ..
T Consensus 304 ~~~~l~~~~~~~--~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~ 379 (420)
T PRK09528 304 VRIIGSGFATGP--L--EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI 379 (420)
T ss_pred HHHHHHHhcccH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777776654332 2 344455566666666667777888999999999888765 5666778888888777 34
Q ss_pred hhhhHHHHHHHHHHHHHHHHhh
Q 009563 488 GGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
|+...|.+.+++.++..++.++
T Consensus 380 G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 380 GFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 6777888888777766555543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=238.60 Aligned_cols=314 Identities=11% Similarity=-0.006 Sum_probs=222.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHhhccccchh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA---FSPNYSTYVVLRMLTGFSTGGVGLC 201 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~ 201 (532)
+....+++.+++.+++.++++++|+++|| +|||++++++.++..++.++.. .+++++.+++.|+++|++.+...+.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchH
Confidence 44668999999999999999999999999 9999999998877666555443 4578999999999999999999999
Q ss_pred hhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-c-----------hHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 202 AFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-T-----------WRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 202 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-~-----------wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
..+++.|++|+++|++++++...+..+|.++|+.+++++. . |++.+.+..+...+..++..+.+||+|
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP 203 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 9999999999999999999999999999999999998875 2 344444444444333435556677765
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
.....+.+.+ .. .........++.+++++.++..++..
T Consensus 204 ~~~~~~~~~~-----------------------------------~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~ 241 (1146)
T PRK08633 204 AAAPEVFDKK-----------------------------------KY-------LFPKLLWRNLKLLRSDRVLWLAIIGL 241 (1146)
T ss_pred CCCccccccc-----------------------------------cc-------ccHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4211000000 00 00000112355677777666554444
Q ss_pred HHHHHHHHHHHHHhhhcc-ccCc---c-hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhc
Q 009563 350 VTINFLCSVVYYGISLNV-VNLQ---T-NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKN 424 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~ 424 (532)
.+.++........++.+. ...+ . .........+++.+++.++.+++.||+++++.+.++.++.+++.+++.+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1146)
T PRK08633 242 SYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS 321 (1146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh
Confidence 444443332222223222 2222 1 2334445566777889999999999999988888887777777666665442
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
. + ..++..++.+++.+...+...+++.+..|++.||+++|+.+++..+|.++++.+.
T Consensus 322 ~--~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~ 378 (1146)
T PRK08633 322 L--A--SVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALT 378 (1146)
T ss_pred H--H--HHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 1 1 4556667778888888888899999999999999999999999988887666555
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=210.58 Aligned_cols=320 Identities=15% Similarity=0.109 Sum_probs=227.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccC---CCCc-hHHHHHHHHHHHHHHHHHhhcch------HH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDS---RLGR-KGSLTVVCMMNAVFGCLTAFSPN------YS 182 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~ 182 (532)
+.+.+++|+ ++.++|++.++..+..++..++.|+++|| |+|| |+.++.+..+.+++.+++.+.++ ..
T Consensus 24 ~~~~~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 24 FFYTDVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHHHccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 556778999 99999999999999999999999999997 2677 45677888888888888876653 46
Q ss_pred HHHHHHHHHHhhccccchhhhheeeccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----------chHHHHHHHH
Q 009563 183 TYVVLRMLTGFSTGGVGLCAFVLATEPV-GPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----------TWRALYIASS 251 (532)
Q Consensus 183 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----------~wr~~f~~~~ 251 (532)
.+++.+++.+++.+...+...++..|.. ++++|++..++...+..+|..+++.+.+.+. +||+.+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~ 180 (437)
T TIGR00792 101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 6778889999988887777788889987 4689999999988888888776655433221 7999999999
Q ss_pred HHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhcccc
Q 009563 252 IPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTG 331 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (532)
++.++..++.++..||.++.. + ++ + ++ +.+...
T Consensus 181 ~l~~~~~~~~~~~~~e~~~~~----~-~~----------------------------~----~~----------~~~~~~ 213 (437)
T TIGR00792 181 LIGVVSLIICFFGTKERYSEI----P-KN----------------------------I----EK----------KLSLKQ 213 (437)
T ss_pred HHHHHHHHHHHcCCEecCCCC----C-cc----------------------------c----cc----------CCCHHH
Confidence 888887766677777753100 0 00 0 00 000112
Q ss_pred chhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccccC-c--chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHH
Q 009563 332 SVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNL-Q--TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGT 408 (532)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~ 408 (532)
.++.++++|.++......++............+++.+.. + ...........++.+++.++.+++.||+|+|+.+..+
T Consensus 214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~ 293 (437)
T TIGR00792 214 IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGG 293 (437)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 456778888776655544444444333222223332221 1 1222233444677788899999999999999999888
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcccccc-------chhhhhHHHHHHHHHHHHHHHH
Q 009563 409 LWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFP-------TVVRNAALGCATQAAQLGAILA 481 (532)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~ 481 (532)
..+.+++.+.+.+..+ +.+ ...+..++.+++.+...+..+++..|..+ ++.+|.+.|+.+....+|..++
T Consensus 294 ~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg 370 (437)
T TIGR00792 294 ILLMVLGYLIFFFAGS-NLP--LILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA 370 (437)
T ss_pred HHHHHHHHHHHHHcch-hHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 8877777766655432 211 34455667778888888888888888865 4567999999999999998888
Q ss_pred HHHH
Q 009563 482 PFVV 485 (532)
Q Consensus 482 p~~~ 485 (532)
+.+.
T Consensus 371 ~~i~ 374 (437)
T TIGR00792 371 GFLV 374 (437)
T ss_pred HHHH
Confidence 8776
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=236.76 Aligned_cols=312 Identities=12% Similarity=-0.009 Sum_probs=219.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH---HHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhh
Q 009563 126 KYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTV---VCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCA 202 (532)
Q Consensus 126 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 202 (532)
....++..+++.++++++++++|+++|| +|||+++.. ..++..+..+.....+++++++++|+++|++.+...|+.
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~ 129 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIK 129 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHH
Confidence 3568899999999999999999999999 999997533 223333333333445899999999999999999999999
Q ss_pred hheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHH
Q 009563 203 FVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLN 279 (532)
Q Consensus 203 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~ 279 (532)
.+++.|++++++|++++++.+++.++|.++||++++++. +|++.|++.++..++.. +..+++|+++... ++...
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~ 206 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGW-LASLFIPKTGNAA--PDLKI 206 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHhhCCCCCCCC--CCCee
Confidence 999999999999999999999999999999999999987 99999955555544443 5666676653200 00000
Q ss_pred HHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHH
Q 009563 280 EAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVV 359 (532)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (532)
+ .. ..+.....++.+.+++.++...+..++.++.....
T Consensus 207 ~-~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1140)
T PRK06814 207 D-RN-----------------------------------------IIRSTITLLKYAKADKRIWLAILGISWFWLVGAVV 244 (1140)
T ss_pred c-cc-----------------------------------------hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 0 00 00000124566777887776666555555444333
Q ss_pred HHHhhhcccc-Ccc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh-------------
Q 009563 360 YYGISLNVVN-LQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV------------- 422 (532)
Q Consensus 360 ~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~------------- 422 (532)
....+.+... .+. .........+++.++|.++.+++.++..+++.+..+.++.+++.+.+.+.
T Consensus 245 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (1140)
T PRK06814 245 LSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKS 324 (1140)
T ss_pred HHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccc
Confidence 3333433332 222 23444556667888999999999988776666655555555444433332
Q ss_pred -----hccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 423 -----KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 423 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.....+ ..++..++.+++.+...+...+++.+.+|++.+|+++|+.++...+|..+++.+.
T Consensus 325 ~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~ 390 (1140)
T PRK06814 325 ILVFLSKRHGW--RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL 390 (1140)
T ss_pred hhhhhcccccH--HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence 001111 4456666778888888888999999999999999999999999999988888776
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=211.93 Aligned_cols=387 Identities=13% Similarity=0.049 Sum_probs=242.6
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc------chHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS------PNYSTYVV 186 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~~ 186 (532)
|.+++++|+ |..+.+++.++. ....+++++.|++.|| +|||+++.++.+++++++++++++ ++++.+.+
T Consensus 51 ~~L~~~lgl---s~~~l~~i~svg-~~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l 125 (591)
T PTZ00207 51 GAMQARYNL---TQRDLSTITTVG-IAVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV 125 (591)
T ss_pred HHHHHHhCc---CHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 789999999 999999998874 4556778899999999 999999999999999999999987 68999999
Q ss_pred HHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHH-HHHHHHHhh-chHHHHHHHHHHHHHHHHHHhcc
Q 009563 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIAL-LSGIAYIFQ-TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 187 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~-~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
.|++.|+|.+...+.....+.+|+| ++||++.++...+.++|.++ +++..+++. +|+..|++.+++.++..++.+.+
T Consensus 126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999996 78999999999999999986 555555555 89999999999888887777776
Q ss_pred cccCc--hhHhhcCCHHHHHHHHHHHHHH---------------------------------------------------
Q 009563 265 LPESP--RWYLVRGKLNEAMKIMRAIAKS--------------------------------------------------- 291 (532)
Q Consensus 265 ~~esp--~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 291 (532)
+++.| ++...+++.++.++..++..+.
T Consensus 205 vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~ 284 (591)
T PTZ00207 205 MRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVI 284 (591)
T ss_pred eeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66554 3322222112221111100000
Q ss_pred ---------------hCCCCCc-cccccchhhhhhh-hhcCccch--hhhhh-hhhccccchhhhhcChHHHHHHHHHHH
Q 009563 292 ---------------NGRHLPD-GVVLMLDDEQEND-ASNGKQNY--KEELA-TKEAVTGSVIDVIKSPLTRIRLFLAVT 351 (532)
Q Consensus 292 ---------------~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (532)
.+...++ +.+.+..+..+.. +....+.. ..+.+ ..++...++++.+++..+|..++..++
T Consensus 285 ~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~c 364 (591)
T PTZ00207 285 VLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFC 364 (591)
T ss_pred HHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHH
Confidence 0000000 0000000000000 00000000 00000 101122377788888777755554444
Q ss_pred HHHHHHHHHHHhhhccccC-----cchHHH-HHHHHHHHHHHHHHHHHHHHhhhCC--------chhHHHHHHHHHHHHH
Q 009563 352 INFLCSVVYYGISLNVVNL-----QTNLYL-NVLVNAVAEMPAFTITAVLLDKLGR--------KPMTIGTLWFSGFFCL 417 (532)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~l~d~~gr--------~~~~~~~~~~~~~~~~ 417 (532)
.........+-.....+.. ..+... ...+.++++.+|.+..|++.....+ |...+....++.++.+
T Consensus 365 g~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~l 444 (591)
T PTZ00207 365 CVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITML 444 (591)
T ss_pred hhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHH
Confidence 3333211111111111111 111111 3456678888899988887722211 1223333333555555
Q ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH---Hh-------
Q 009563 418 LGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV---VL------- 487 (532)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~---~~------- 487 (532)
++.+..... .+++..++.+++.|..+++....++|+|. ++-|+-.-+.....-+|..+..-.. .+
T Consensus 445 ll~~~~p~~----~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~ 519 (591)
T PTZ00207 445 TLFLTLPKA----ALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL 519 (591)
T ss_pred HHHHHCCcc----HhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 555553322 57788899999999999999999999999 7767766666665555555542222 11
Q ss_pred ------h---hhhHHHHHHHHHHHHHHHHhhc
Q 009563 488 ------G---GWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 488 ------~---~~~~~~~~~~~~~~~~~~~~~l 510 (532)
| ...+|++.+++++++.+...++
T Consensus 520 ~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 520 GQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred CCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 1 4568999999988888876544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=204.43 Aligned_cols=362 Identities=16% Similarity=0.080 Sum_probs=222.9
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
+.+.+|+|- .....|+.+.+.++.+++.++.|.++|. ||||.+++.+.++..+|++.++.++|...++++..+.|
T Consensus 68 ~~I~~diG~----~~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G 142 (599)
T PF06609_consen 68 PYINADIGG----SDNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG 142 (599)
T ss_pred HHHHHhcCC----CccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH
Confidence 678888885 5778899999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
+|.|.... ....++|..|.|.|....++...........++.++..+. +|||.|++.+++..+.++..+++... |
T Consensus 143 vgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~P-P 220 (599)
T PF06609_consen 143 VGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFP-P 220 (599)
T ss_pred HhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 99777664 4556899999999988877776665555556777776554 99999999998877766444443332 3
Q ss_pred hhHhhcCC---HHHHHHHHHHHHH-------------Hh--CCCCCcccccc-chhhhh-hhhhcCccchhhhhhhhhcc
Q 009563 270 RWYLVRGK---LNEAMKIMRAIAK-------------SN--GRHLPDGVVLM-LDDEQE-NDASNGKQNYKEELATKEAV 329 (532)
Q Consensus 270 ~~~~~~~~---~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 329 (532)
++...+++ ..+..+.++.+.- -+ +....+..... ...-.. -...-.---|+. ....+.
T Consensus 221 ~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~--~~~~~~ 298 (599)
T PF06609_consen 221 PRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW--FGAPKD 298 (599)
T ss_pred chhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh--hccCCC
Confidence 22212221 1122222221100 00 00000000000 000000 000000000000 000111
Q ss_pred ccchhhhhcChHHH-HHHHHHHHHHHHH-HHHHHHhhhccccCcc------hHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 009563 330 TGSVIDVIKSPLTR-IRLFLAVTINFLC-SVVYYGISLNVVNLQT------NLYLNVLVNAVAEMPAFTITAVLLDKLGR 401 (532)
Q Consensus 330 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~d~~gr 401 (532)
+--..++||+++.. ..+++.++..... +..++.......-+.. .........+++..+|.++.+.+..+++|
T Consensus 299 Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~ 378 (599)
T PF06609_consen 299 PLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH 378 (599)
T ss_pred CcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc
Confidence 22345677774322 2222222221111 1111111111111111 22334455667777888888999988876
Q ss_pred ch-hHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHH
Q 009563 402 KP-MTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAIL 480 (532)
Q Consensus 402 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i 480 (532)
-| .++++..++.+++.++.....++.. ..+...++.+++.+.........+.-..|++.-+++.|+..+++.+|+.+
T Consensus 379 ~Kw~li~~~~~~ta~~Gama~~~~~n~~--~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI 456 (599)
T PF06609_consen 379 IKWQLIFGSVLMTAFCGAMAAVRPDNKN--AAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI 456 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCCCcc--hHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH
Confidence 54 4456776776666666655443333 34566778888888877778888888899999999999999999999888
Q ss_pred HHHHH
Q 009563 481 APFVV 485 (532)
Q Consensus 481 ~p~~~ 485 (532)
+..+.
T Consensus 457 g~aIy 461 (599)
T PF06609_consen 457 GYAIY 461 (599)
T ss_pred HHHHH
Confidence 75554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=203.81 Aligned_cols=368 Identities=12% Similarity=0.013 Sum_probs=235.3
Q ss_pred CceeecccccchhhhH-HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYK-VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~-~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 191 (532)
|.+.+|+|+ ++.| .|.+.++++.++++++++.|+++|| +|.|+++.++.+.+++.+++.++++++..+.+.|++.
T Consensus 50 p~L~~elgl---T~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll 125 (511)
T TIGR00806 50 PYLLTVLNF---TEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY 125 (511)
T ss_pred HHHHHHcCC---CHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999 9999 9999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHH--HHHHHHHHHHHhccccc
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIAS--SIPSILFLLIILPFLPE 267 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~--~~~~~~~~~~~~~~~~e 267 (532)
|++.|... +...++..|+|+++|+++.++...+..+|.++++++++++. |||+.+.+. ...+.++.++..+++|.
T Consensus 126 GvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 126 SVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999 99999999999999999999999999999999999999855 998765433 33344444467788886
Q ss_pred CchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHH-HH
Q 009563 268 SPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRI-RL 346 (532)
Q Consensus 268 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 346 (532)
.++.+.-+++.+.... ...+.+....++. . +..+.........-......+++..+|+.... .+
T Consensus 205 ~~~sl~f~~~~~~~~~------------~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSl 269 (511)
T TIGR00806 205 PKRSLFFNRLEDVRGA------------LPCELDQMVPGPG-G--KLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSL 269 (511)
T ss_pred Cchhhhhccccccccc------------cccccccCCCCCc-c--ccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhH
Confidence 6654433321110000 0000000000000 0 00000000000111222345556667765433 33
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCc----chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHH--HHHHHHHHHHHH
Q 009563 347 FLAVTINFLCSVVYYGISLNVVNLQ----TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGT--LWFSGFFCLLGS 420 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~--~~~~~~~~~~~~ 420 (532)
+..+.........+|...++....+ .+... -.+..+.+.+..+..|++-.+..+-..+.++ .++.+..++++.
T Consensus 270 Wwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~v-eA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~ 348 (511)
T TIGR00806 270 WWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAV-DAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS 348 (511)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHH-HHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh
Confidence 3333333334455555555532212 11111 1222233445677777774444332223332 233333333333
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH----Hh---------
Q 009563 421 LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----VL--------- 487 (532)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~--------- 487 (532)
... +.| +.++..+++...+....++...-+++....+.-|..+|+.+++..+-..+-..++ .+
T Consensus 349 ~t~--~Iw--~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~ 424 (511)
T TIGR00806 349 QSH--DIW--VLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFR 424 (511)
T ss_pred ccc--chH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEE
Confidence 322 222 6777888888888888888888778877777779999999888766655544333 11
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 009563 488 GGWLPFAVFAACGIIGGL 505 (532)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~ 505 (532)
-+...|.+++++.++..+
T Consensus 425 vY~~yf~~~~~i~~~~~~ 442 (511)
T TIGR00806 425 IYSVYFLVLSIICFFGAG 442 (511)
T ss_pred ehhhHHHHHHHHHHHHHH
Confidence 144456666655555544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=209.07 Aligned_cols=380 Identities=12% Similarity=0.004 Sum_probs=232.8
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYST-YVVLRMLT 191 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~ 191 (532)
..+.+++|+ +..+.+++.+.+.....+..+++|+++||++|||++++++.+++++++++++++.+... ++++|+++
T Consensus 39 ~yl~~~lg~---~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~ 115 (489)
T PRK10207 39 VFFVKQLGF---SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTI 115 (489)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 455678999 99999999999998889999999999996479999999999999999999999876554 55899999
Q ss_pred HhhccccchhhhheeecccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 192 GFSTGGVGLCAFVLATEPVGPS--KRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
|+|.|...+...+++.|.+|++ +|++++++++.+.++|..++|.+++++. |||+.|++.++. ++..++.+.+.+
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~-~~~~~~~~~~~~ 194 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG-LIIALLVYFACR 194 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HHHHHHHHHHcc
Confidence 9999999999999999999877 4577899999999999999999999987 999999986553 333323333333
Q ss_pred cCchhHh--hcC-CHHHHHHHH---------HHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchh
Q 009563 267 ESPRWYL--VRG-KLNEAMKIM---------RAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVI 334 (532)
Q Consensus 267 esp~~~~--~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (532)
+..+... .++ +.|.....+ -.............. ... ...... .... ..++. + ..
T Consensus 195 ~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~i~---~~~f--~~~~~-~----~~ 261 (489)
T PRK10207 195 GMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANL--VLI-VLSIVV---TIIF--FREAF-K----LD 261 (489)
T ss_pred hhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHH-HHHHHH---HHHH--HHHHh-c----CC
Confidence 2211000 001 111100000 000000000000000 000 000000 0000 00000 0 01
Q ss_pred hhhcChHHHHHHHH--HHHHHHHHHHHHHHhhhcccc-Ccc-------hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchh
Q 009563 335 DVIKSPLTRIRLFL--AVTINFLCSVVYYGISLNVVN-LQT-------NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPM 404 (532)
Q Consensus 335 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~ 404 (532)
+.+|++.+....+. ..+.+.......+..+.+.++ ... ..........+..++..++.+++.||+++|+.
T Consensus 262 ~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~ 341 (489)
T PRK10207 262 KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK 341 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34444433222111 122222222222333333321 111 11222223334455677778899999998863
Q ss_pred -------HHHHHHHHHHHHHHHH-----hhhc-cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHH
Q 009563 405 -------TIGTLWFSGFFCLLGS-----LVKN-NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCAT 471 (532)
Q Consensus 405 -------~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 471 (532)
+.++.++.+++++.+. .... .....++.+...++.+++.....+...+++.+..|++.++.++|+.+
T Consensus 342 ~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~ 421 (489)
T PRK10207 342 DLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWF 421 (489)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence 6667777666655432 1111 11111245667788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-h--------------hhhhHHHHHHHHHHHHHHHHhh
Q 009563 472 QAAQLGAILAPFVVV-L--------------GGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 472 ~~~~~g~~i~p~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
....+|+.++..+.. . .+...|...++..+++.++.+.
T Consensus 422 l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 422 LTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred HHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999899888877661 1 1345566666655555554433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=204.54 Aligned_cols=341 Identities=15% Similarity=0.096 Sum_probs=221.9
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHH---hhcc-----hHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLT---AFSP-----NYSTYV 185 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~---~~~~-----~~~~l~ 185 (532)
.+.+++|+ +..+.|++.+++.++..+++++.|+++|| +|||+.++.+....+++.... .+.+ .+..++
T Consensus 28 ~~~~~~g~---s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (396)
T TIGR00882 28 WLHDVNGL---SKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAI 103 (396)
T ss_pred HHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44567899 99999999999999999999999999999 999999988777665544332 1221 234456
Q ss_pred HHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhc
Q 009563 186 VLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILP 263 (532)
Q Consensus 186 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
+.|++.|++.+...+....+..|.. +++++..+......++|.++++.+++.+. +||+.|++.+++.++..++.+.
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 104 VGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 7789999988888888877776643 33455667777888999999999988776 9999999998888876644444
Q ss_pred ccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHH
Q 009563 264 FLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTR 343 (532)
Q Consensus 264 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (532)
..||+|+. ++.++ .. +.+ +.+....+.++++|+|.++
T Consensus 182 ~~~~~~~~-------~~~~~--------~~-------------------~~~---------~~~~~~~~~~~~l~~~~~~ 218 (396)
T TIGR00882 182 AKPKAPSS-------ATVAN--------AL-------------------GAN---------ASAFSLKLALELFRQRKFW 218 (396)
T ss_pred hCCCCchh-------hhhhc--------cc-------------------ccc---------cCCCCHHHHHHHHcCCcHH
Confidence 44444320 00000 00 000 0000112456778888765
Q ss_pred HHHHHHHHHHHHHHHH-----HHHhhhccc-cCc-chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 009563 344 IRLFLAVTINFLCSVV-----YYGISLNVV-NLQ-TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFC 416 (532)
Q Consensus 344 ~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~ 416 (532)
...+..+......... .|....... ..+ ...........+...++.+..+++.||+++|+.+.++..+.++..
T Consensus 219 ~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~ 298 (396)
T TIGR00882 219 MFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRI 298 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4444333322222111 122222111 111 112233344455667778899999999999999988888777766
Q ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHH-HHHHHHHHHHHHHHHH-----Hhhhh
Q 009563 417 LLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGC-ATQAAQLGAILAPFVV-----VLGGW 490 (532)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~i~p~~~-----~~~~~ 490 (532)
.+.....+ .+ ...+..++.+++..........+..+..|++.++++.+. .+....+|+.++|.+. ..|+.
T Consensus 299 ~~~~~~~~--~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~ 374 (396)
T TIGR00882 299 IGSSFATT--AL--EVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQ 374 (396)
T ss_pred HHHHhcCC--hH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccH
Confidence 65554332 22 334455556666555555566677788888888887766 5677788888888666 45677
Q ss_pred hHHHHHHHHHHHHHHHH
Q 009563 491 LPFAVFAACGIIGGLFA 507 (532)
Q Consensus 491 ~~~~~~~~~~~~~~~~~ 507 (532)
..|.+.+++.++..+..
T Consensus 375 ~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 375 GAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777665543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-23 Score=201.47 Aligned_cols=330 Identities=11% Similarity=-0.028 Sum_probs=222.6
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCch----HHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRK----GSLTVVCMMNAVFGCLTAFSPNYSTYVVLR 188 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r 188 (532)
|.+.+|+|. |..++|++.+++.++..++++++|++.|| +||| +.+.++..+. .......+++++.+++.|
T Consensus 28 ~~~l~~~g~---s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~ 101 (382)
T PRK11128 28 SVWLKGQGY---TPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAI 101 (382)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHH
Confidence 667788999 99999999999999999999999999999 9984 3333332222 223344568899999999
Q ss_pred HHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccc
Q 009563 189 MLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 189 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
++.|++.+...+...+++.++ +++|++..+......++|.++||++++.+. |||..|++.++..++.. +..++.
T Consensus 102 ~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~ 178 (382)
T PRK11128 102 GLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML-LGQLLR 178 (382)
T ss_pred HHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcc
Confidence 999999998899888877776 356788888888899999999999999886 99999998876555443 333444
Q ss_pred ccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHH
Q 009563 266 PESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIR 345 (532)
Q Consensus 266 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (532)
||.++ +++.+ + +.++...++++++|+|.++..
T Consensus 179 ~~~~~----~~~~~------------------------------------~--------~~~~~~~~~~~i~~~~~~~~~ 210 (382)
T PRK11128 179 PTIMP----QGESR------------------------------------Q--------QESAGWPAWKALLKEPTVWRF 210 (382)
T ss_pred CCCCC----ccccc------------------------------------c--------ccccccchHHHHHcChhHHHH
Confidence 44311 00000 0 000011256788888877766
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh
Q 009563 346 LFLAVTINFLCSVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV 422 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~ 422 (532)
....++........+...+.+..+.+.+ .........+..++..++.+++.||+++|+.+..+.++.++..+++...
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~ 290 (382)
T PRK11128 211 LLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST 290 (382)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555554444332222223333333322 2333334456677778899999999999999888888887776665543
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHH-HHHHHHHHHHHH-----HhhhhhHHHHH
Q 009563 423 KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQA-AQLGAILAPFVV-----VLGGWLPFAVF 496 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~i~p~~~-----~~~~~~~~~~~ 496 (532)
++ .+ ..++..++.+++.+...+....+..+. +++++++..++.+.. ..+|..++|.+. ..+. ..++..
T Consensus 291 ~~--~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~ 364 (382)
T PRK11128 291 TA--LP--WLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVM 364 (382)
T ss_pred hh--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence 32 22 455667777888887778888887776 555678888888644 455667777766 2233 455555
Q ss_pred HHHHHHHHH
Q 009563 497 AACGIIGGL 505 (532)
Q Consensus 497 ~~~~~~~~~ 505 (532)
+++.+++.+
T Consensus 365 ~~~~~~~~~ 373 (382)
T PRK11128 365 ALVALPALF 373 (382)
T ss_pred HHHHHHHHH
Confidence 555554433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-23 Score=203.81 Aligned_cols=334 Identities=16% Similarity=0.116 Sum_probs=241.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc-----chHHHHHHHHHHHHhhccccc
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS-----PNYSTYVVLRMLTGFSTGGVG 199 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~ 199 (532)
|+..++++.++..+...+.++++|.++|| +.||++++.+-++.++..++.++. .+.+.+++.-++.|++.+...
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999 999999999988877665544432 478899999999999999999
Q ss_pred hhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcC
Q 009563 200 LCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRG 276 (532)
Q Consensus 200 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~ 276 (532)
|+..+++.|..|+++...+.++.++..++..++||.++|.+. |-.+.|++.++..++.. +.....+..++ .+.
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i-~~l~~~~~~~~---~~~ 197 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISI-LALLRWKPPPP---PSS 197 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcccccc---ccc
Confidence 999999999999999999999999999999999999999876 77888888877666544 33333332110 000
Q ss_pred CHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHH
Q 009563 277 KLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLC 356 (532)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (532)
.. .++.. ...+..++-+.++|..+..+....+..+..
T Consensus 198 ~~--~e~~~-----------------------------------------~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~ 234 (524)
T PF05977_consen 198 LP--RERFF-----------------------------------------SALREGLRYVRSSPPLRSVLLRSFLFNLFA 234 (524)
T ss_pred cc--hhhhh-----------------------------------------hhHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 00 00000 011123445555665555444444444433
Q ss_pred HHHHHHhhhcccc-Cc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 009563 357 SVVYYGISLNVVN-LQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVR 432 (532)
Q Consensus 357 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (532)
......++++..+ .+ ...+......+++.++|.++.+++.+|+++++++..+.++.+++++.+.+..+.. ..
T Consensus 235 ~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~----~~ 310 (524)
T PF05977_consen 235 SAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFW----LA 310 (524)
T ss_pred hHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHH----HH
Confidence 3333334444322 22 2334455667788889999999999999988888888888888777776654432 45
Q ss_pred HHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH
Q 009563 433 MICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
.+..++.|++.........+...+..|++.||++++++.+....+..+|.++. ..|....+.+.++..+++.++.
T Consensus 311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888889999999999999999999888776666666655 4556666666666655555554
Q ss_pred hhc
Q 009563 508 FYL 510 (532)
Q Consensus 508 ~~l 510 (532)
...
T Consensus 391 ~~~ 393 (524)
T PF05977_consen 391 LRF 393 (524)
T ss_pred HHh
Confidence 433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=183.48 Aligned_cols=312 Identities=14% Similarity=0.049 Sum_probs=237.8
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA---FSPNYSTYVVLRM 189 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~ 189 (532)
|++++.|++ +..+.+++...++.|+.+.+++.|++.+| +|+|+.+++|+.++++++.++. ...++..++++-+
T Consensus 37 p~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lF 112 (422)
T COG0738 37 PHLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALF 112 (422)
T ss_pred HHHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 899999999 99999999999999999999999999999 9999999999999999999985 5578999999999
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----------------------chHHHH
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----------------------TWRALY 247 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----------------------~wr~~f 247 (532)
+.|.|.+...+.+..++....++++..+.+.+.+.+.++|.+++|++++.+. .||++|
T Consensus 113 ila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pY 192 (422)
T COG0738 113 ILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPY 192 (422)
T ss_pred HHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999999999999987754 367777
Q ss_pred HHHHHHHHHHHHHHhc-ccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhh
Q 009563 248 IASSIPSILFLLIILP-FLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATK 326 (532)
Q Consensus 248 ~~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (532)
...+...+++.+.... ..|+.+.. .. +..
T Consensus 193 l~~~~~lvll~v~~~~~k~p~~~~~-----~~---------------------------------------------~~~ 222 (422)
T COG0738 193 LILAGLLVLLAVLILLSKLPDLQVA-----AP---------------------------------------------SLG 222 (422)
T ss_pred HHHHHHHHHHHHHHHhccCCcCCcc-----cc---------------------------------------------ccc
Confidence 7777666655522221 22322100 00 000
Q ss_pred hccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccc-Cc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCc
Q 009563 327 EAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVN-LQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRK 402 (532)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~ 402 (532)
++......+++++|.++...+..+++..........+..+..+ .+ .+........-.+.++|++++.++..|+...
T Consensus 223 ~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~ 302 (422)
T COG0738 223 ASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE 302 (422)
T ss_pred ccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 0011145678899988877777666665544333333333322 22 1222333444466788999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHH
Q 009563 403 PMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAP 482 (532)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p 482 (532)
+.+.+..+...+.++...+..+. +.+...++.+++++..+|...+...+..| ++-.. .|.......+|+++.|
T Consensus 303 k~Laf~a~~~ill~~~~~l~~g~-----v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~-~s~~l~maivGGAiiP 375 (422)
T COG0738 303 KYLAFYALIAILLLLAVALIGGV-----VALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSV-GSGLLVMAIVGGAIIP 375 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccc-cceeeeeheecchHHH
Confidence 99988888888777777777663 56677888899999999999999999999 44333 3344445667888888
Q ss_pred HHH
Q 009563 483 FVV 485 (532)
Q Consensus 483 ~~~ 485 (532)
++.
T Consensus 376 ~l~ 378 (422)
T COG0738 376 PLQ 378 (422)
T ss_pred HHH
Confidence 887
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=197.25 Aligned_cols=329 Identities=16% Similarity=0.100 Sum_probs=234.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
+.+++|++.+.+.+.+.+.+++.|.+.|| +|+|..+++|+++..++++++++.+++++++++|.+||+|.+...++..+
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 78899999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHH
Q 009563 205 LATEPVGPS-KRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNE 280 (532)
Q Consensus 205 ~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~ 280 (532)
+++|.+|++ +|++++|+.-.+.++|..+||++|+.+. |.+.+|++.+++.++-..+.++.++.+.. +.+
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~------~~~- 255 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM------DPD- 255 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc------Ccc-
Confidence 999999865 4799999999999999999999999998 99999999999999988555555554321 000
Q ss_pred HHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHH
Q 009563 281 AMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVY 360 (532)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (532)
......++++++++|..+..............+.-
T Consensus 256 ---------------------------------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLe 290 (464)
T KOG3764|consen 256 ---------------------------------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLE 290 (464)
T ss_pred ---------------------------------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhC
Confidence 00112367888999876554444444433333333
Q ss_pred HHhhhcccc-C---cchHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHH--HHHHHHHHHHHHHHhhhccchhHHHHHH
Q 009563 361 YGISLNVVN-L---QTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTI--GTLWFSGFFCLLGSLVKNNGIWKIVRMI 434 (532)
Q Consensus 361 ~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (532)
-.++.+..+ + ....+...+...+...+++.+.|.+.||++..+.+. .+.+...+++....+...... .++
T Consensus 291 Ptlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~----L~v 366 (464)
T KOG3764|consen 291 PTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ----LWV 366 (464)
T ss_pred cccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH----Hhh
Confidence 333333222 1 224445555666778889999999999999443332 333333333333333333322 222
Q ss_pred HHHHHHHHHHhhhh---hHhhhccccccch---hhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHH
Q 009563 435 CGVMGIFGVAGTYN---LLFIYTTELFPTV---VRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIG 503 (532)
Q Consensus 435 ~~~~~~~~~~~~~~---~~~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~ 503 (532)
-....+++.+...+ ....+..|.-..+ ..|.+.++......+|.++||.+. ..|..+...+.++..++.
T Consensus 367 p~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iy 446 (464)
T KOG3764|consen 367 PNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIY 446 (464)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHH
Confidence 22222333333333 2333333332223 557888888888899999999888 567778777777777776
Q ss_pred HHHHhhc
Q 009563 504 GLFAFYL 510 (532)
Q Consensus 504 ~~~~~~l 510 (532)
.-++.++
T Consensus 447 apvl~ll 453 (464)
T KOG3764|consen 447 APVLLLL 453 (464)
T ss_pred HHHHHHH
Confidence 6655444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-22 Score=196.61 Aligned_cols=373 Identities=10% Similarity=-0.017 Sum_probs=225.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhcccc
Q 009563 119 WGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGV 198 (532)
Q Consensus 119 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 198 (532)
+|+ +..+.+++.+.+.++..++++++|+++||++|||+++.++.++.+++.++.+++++++.++++|++.|+|.|..
T Consensus 43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~ 119 (475)
T TIGR00924 43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF 119 (475)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence 899 99999999999999999999999999997359999999999999999999999999999999999999999999
Q ss_pred chhhhheeecccCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccc----cC
Q 009563 199 GLCAFVLATEPVGPSK---RGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLP----ES 268 (532)
Q Consensus 199 ~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~----es 268 (532)
.+...++++|++|+++ |+++.++...+.++|.++|+.+++.+. +||+.|++.++..++.. +.+++.+ +.
T Consensus 120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~ 198 (475)
T TIGR00924 120 KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL-LTFFAGRHMLRDI 198 (475)
T ss_pred cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHcccccccC
Confidence 9999999999998764 888999999999999999999999886 89999998876554443 3333322 22
Q ss_pred chhHhhcCCHHHHHHHHHH----------HHH--HhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhh
Q 009563 269 PRWYLVRGKLNEAMKIMRA----------IAK--SNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDV 336 (532)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (532)
|+.. .+.+.++....... ... ...+. .. ...... ... .. .-.+ ...... ++ ...+.
T Consensus 199 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~--~~-~~~~-~~~~~~-~~--~~~~~ 266 (475)
T TIGR00924 199 GSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV-VI-ANILLM--TVT--LA-VIIF-FFRLAF-KP--RLDAV 266 (475)
T ss_pred CCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-HH-HHHHHH--HHH--HH-HHHH-HHHHHH-hc--cCCHH
Confidence 2100 00000100000000 000 00000 00 000000 000 00 0000 000000 00 00011
Q ss_pred hcCh--HHHHHHHHHHHHHHHHHHHHHHhhhcccc-C-------cchHHHHHHHHHHHHHHHHHHHHHHHhhhCC-----
Q 009563 337 IKSP--LTRIRLFLAVTINFLCSVVYYGISLNVVN-L-------QTNLYLNVLVNAVAEMPAFTITAVLLDKLGR----- 401 (532)
Q Consensus 337 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr----- 401 (532)
-+++ .....++...+.+.........++.+..+ . ............+..++...+..++..|++|
T Consensus 267 ~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~ 346 (475)
T TIGR00924 267 ARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDP 346 (475)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 1111 11112222223333322222223322211 1 1112333334444444444443343334333
Q ss_pred chhH--HHHHHHHHHHHHHHHhh----hc-cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHH
Q 009563 402 KPMT--IGTLWFSGFFCLLGSLV----KN-NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAA 474 (532)
Q Consensus 402 ~~~~--~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 474 (532)
+... .++.++.+++++.+.+. .. .....++.+...++.+++.....|...+++.+..|++.||+++|+.....
T Consensus 347 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~ 426 (475)
T TIGR00924 347 TTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ 426 (475)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3333 56777777776666542 10 01112256778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHHHH
Q 009563 475 QLGAILAPFVVV-----LGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 475 ~~g~~i~p~~~~-----~~~~~~~~~~~~~~~~~~~~~ 507 (532)
.+|..+++.+.. .+....|...++..++..++.
T Consensus 427 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 427 AMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 999888887762 134445555555555544444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=184.98 Aligned_cols=321 Identities=19% Similarity=0.121 Sum_probs=205.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
+....|.+.+.|.+++.+.++.+|.++|| +|||++++++++..++...+.++++|+..++++|++.|+..|- .....+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA 143 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA 143 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence 67789999999999999999999999999 9999999999999999999999999997777779999997765 556889
Q ss_pred eeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc---------hHHHHHHHHHHHHHHHHHHhcccccCchhHhhc
Q 009563 205 LATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQT---------WRALYIASSIPSILFLLIILPFLPESPRWYLVR 275 (532)
Q Consensus 205 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~---------wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~ 275 (532)
+++|.+++|+|++.++.....+++|.++||.+|+++.- +-.+-++..+..........+++||+-.. +
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~---r 220 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL---R 220 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc---h
Confidence 99999999999999999999999999999999999862 11112222233333233566788998321 1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChH-------HHHHHHH
Q 009563 276 GKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPL-------TRIRLFL 348 (532)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 348 (532)
++.++... ..+..+++.+. .+.+. ..-....+|+. ++...+.
T Consensus 221 k~~~~~~~----------------~~~~~~~~~~~---~~~~~------------~~~v~~lrn~p~~~~i~~~~i~~l~ 269 (451)
T KOG2615|consen 221 KRNDEHST----------------LQEAADDRLAL---LKFAR------------IFKVAALRNPPLLDFISVLRIFGLH 269 (451)
T ss_pred hhcccccc----------------hhhhhhhhhhh---cchhh------------hhhhhhhcCccccchHHHHHHHHHH
Confidence 11111000 00000000000 00000 00001112211 1112222
Q ss_pred HHHHHHHHHHHHHHhhhc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhCCc-----hhHHHHHHHHHHHHHHHHhh
Q 009563 349 AVTINFLCSVVYYGISLN-VVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRK-----PMTIGTLWFSGFFCLLGSLV 422 (532)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~-----~~~~~~~~~~~~~~~~~~~~ 422 (532)
.+.+....+..-+..... ...++.+.....-+....++.+.++.+.+..+..|. -.+..+..++.-..+++...
T Consensus 270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~ 349 (451)
T KOG2615|consen 270 YFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA 349 (451)
T ss_pred HHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc
Confidence 222222222222222222 233333333222222233344445555555544433 34445555555555555444
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 423 KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.... .......+..+......+....++....|++.||++.|+..+.+.++.++||.+.
T Consensus 350 ~~~~----~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~ 408 (451)
T KOG2615|consen 350 RTPV----VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS 408 (451)
T ss_pred ccch----hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence 4432 5667777888888888899999999999999999999999999999999999998
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=208.49 Aligned_cols=275 Identities=11% Similarity=0.090 Sum_probs=191.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc-------------
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP------------- 179 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~------------- 179 (532)
++++++|++ +..+.|++.+.+.++++++.++.|+++|| +|||+++.++.++++++++++++.+
T Consensus 57 ~~iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~ 132 (633)
T TIGR00805 57 TTIERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS 132 (633)
T ss_pred hhhhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence 899999999 99999999999999999999999999999 9999999999999999999998763
Q ss_pred --------------------------------------hHHHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHH
Q 009563 180 --------------------------------------NYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMS 221 (532)
Q Consensus 180 --------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 221 (532)
.+..++++|+++|+|.+..++...+++.|++|+++|++++++
T Consensus 133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i 212 (633)
T TIGR00805 133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI 212 (633)
T ss_pred ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence 245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----c---------------------hHHHHHHHHHHHHHHHHHHhcccccC-chhHhhc
Q 009563 222 TFYFFSTGIALLSGIAYIFQ----T---------------------WRALYIASSIPSILFLLIILPFLPES-PRWYLVR 275 (532)
Q Consensus 222 ~~~~~~~G~~~~~~l~~~l~----~---------------------wr~~f~~~~~~~~~~~~~~~~~~~es-p~~~~~~ 275 (532)
+..+..+|.++|+++++.+. + |+..|++.+++.++..+ .++++|+. |+.. .+
T Consensus 213 ~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v-~l~~~p~~lp~~~-~~ 290 (633)
T TIGR00805 213 LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI-PFFFFPKALPKEG-KR 290 (633)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH-HHHhCccccCCcc-cc
Confidence 99999999999999988754 1 67778888888877664 44555554 3210 00
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHH
Q 009563 276 GKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFL 355 (532)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (532)
.+.+..++ ... +. . ..+.........+.....++.++++|.++...+..++....
T Consensus 291 ~~~~~~~~-------~~~-----------~~--~-----~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~ 345 (633)
T TIGR00805 291 VNVDVHET-------EKL-----------EK--S-----EDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA 345 (633)
T ss_pred cchhhhhh-------hcc-----------cc--c-----ccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 00000000 000 00 0 00000000000111223567899999887776666666555
Q ss_pred HHHHHHHhhhccc-cCcchHHHHHHH---HHH-HHHHHHHHHHHHHhhhCC--chhHHHHHHHHHHHHHH
Q 009563 356 CSVVYYGISLNVV-NLQTNLYLNVLV---NAV-AEMPAFTITAVLLDKLGR--KPMTIGTLWFSGFFCLL 418 (532)
Q Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~d~~gr--~~~~~~~~~~~~~~~~~ 418 (532)
........+.+++ ..+.+......+ ..+ +.+++.+++|+++||+++ |+.+..+.++..+..++
T Consensus 346 ~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 346 FNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 5444444454443 344443333222 222 456889999999999874 45555666555555443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-20 Score=181.38 Aligned_cols=338 Identities=13% Similarity=0.025 Sum_probs=215.6
Q ss_pred CceeecccccchhhhHHHHH--HHHHHHHHHHHHHHH-HhhccCCCCchHHHHHHHHHH-HHHHHHHh---hcch-HHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLV--QALFFFGCMIGAGVF-GHLSDSRLGRKGSLTVVCMMN-AVFGCLTA---FSPN-YSTY 184 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~--~s~~~l~~~~~~~~~-g~l~dr~~Grr~~l~~~~~~~-~~~~~~~~---~~~~-~~~l 184 (532)
|.+.+|.|+ |..++|++ .++..+...+.++++ ++..|| +||||..++.+.+. ++.....+ ...+ ..++
T Consensus 25 p~~l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (390)
T TIGR02718 25 PTLLREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWA 100 (390)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 888899999 99999997 466788888888888 457898 99999876655332 22222222 2222 3344
Q ss_pred HHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHH
Q 009563 185 VVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLII 261 (532)
Q Consensus 185 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~ 261 (532)
+..-++.++..+...+....+..|..++++++...+....+..+|.++++...+.+. |||..|++.++..++..+..
T Consensus 101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~ 180 (390)
T TIGR02718 101 VGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCV 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 555566667777777778888888888888888888888888899999887776654 99999999998887766444
Q ss_pred hcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChH
Q 009563 262 LPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPL 341 (532)
Q Consensus 262 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (532)
++..|++++ +++.++ +...++++.+|+|.
T Consensus 181 ~~~~~~~~~----~~~~~~-----------------------------------------------~~~~~~~~~l~~~~ 209 (390)
T TIGR02718 181 LWLKDRAVA----SPEAPL-----------------------------------------------ARRASLFRFFRRPL 209 (390)
T ss_pred HHcCCCCcC----ccccch-----------------------------------------------hhHHHHHHHHcCcC
Confidence 443333221 000000 00113556778876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCcchHHHHHHH---HH-HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH
Q 009563 342 TRIRLFLAVTINFLCSVVYYGISLNVVNLQTNLYLNVLV---NA-VAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCL 417 (532)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~ 417 (532)
.+......++........+...+.+..+.+.+....... .+ ...+++.++.+++.||+|+|+.+..+..+..+..+
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~ 289 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLAL 289 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 665555544444433333333344444444443333222 22 34556788999999999999988877665533322
Q ss_pred HHHhhhc---cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccc-hhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh
Q 009563 418 LGSLVKN---NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPT-VVRNAALGCATQAAQLGAILAPFVV-----VLG 488 (532)
Q Consensus 418 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~ 488 (532)
....... ..... ..+....+.++..+...+...+...+..++ +.+++.+++.+....+|..++|.+. ..|
T Consensus 290 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G 368 (390)
T TIGR02718 290 LWFAQAAFWLAPGIA-VAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG 368 (390)
T ss_pred HHHHHHHcccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2221111 11111 223333444555666667667776666665 8889999999999999999999887 345
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 009563 489 GWLPFAVFAACGIIGGLF 506 (532)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~ 506 (532)
+...|.+.+++.+++.+.
T Consensus 369 ~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 369 YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 667777766666665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-19 Score=176.28 Aligned_cols=363 Identities=15% Similarity=0.095 Sum_probs=237.0
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccC---CCCchHHHHHH-HHHHHHHHHHHhhcchHH------
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDS---RLGRKGSLTVV-CMMNAVFGCLTAFSPNYS------ 182 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr---~~Grr~~l~~~-~~~~~~~~~~~~~~~~~~------ 182 (532)
+.+.+++|+ +..+.+++..+..+...+.+++.|.++|| |+|||+.++++ .+...++.++.+++++..
T Consensus 28 ~~yl~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~ 104 (477)
T TIGR01301 28 TPYVQELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDN 104 (477)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccc
Confidence 446678999 99999999999999999999999999993 39999988775 666666767777776643
Q ss_pred -----------HHHHHHHHHHhhccccchhhhheeecccCCCch--hHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 009563 183 -----------TYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKR--GAAGMSTFYFFSTGIALLSGIAYIFQ-------- 241 (532)
Q Consensus 183 -----------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~l~-------- 241 (532)
.++++-.+..++.....+...+++.|.+|+++| +.+.++.+.+.++|.++|+.+++...
T Consensus 105 ~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~ 184 (477)
T TIGR01301 105 LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFT 184 (477)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 233333344557777888889999999998865 57899999999999999999987641
Q ss_pred ----------chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhh
Q 009563 242 ----------TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQEND 311 (532)
Q Consensus 242 ----------~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (532)
+.|..|++.++..++..++..+..+|.|... .++.++ + +.++
T Consensus 185 ~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~----------------------~~~~-- 236 (477)
T TIGR01301 185 KTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S----------------------EAAP-- 236 (477)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h----------------------hccc--
Confidence 5588999999888888878888999975310 000000 0 0000
Q ss_pred hhcCccchhhhhhhhhccccchhhhhc-ChHHHHHHHHHHHHHHHHHHHHHHhhhccc------cCc-chH--------H
Q 009563 312 ASNGKQNYKEELATKEAVTGSVIDVIK-SPLTRIRLFLAVTINFLCSVVYYGISLNVV------NLQ-TNL--------Y 375 (532)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~--------~ 375 (532)
.++.. .....+.-++.+.+ .+..++..++.++.|+.+....+..+.+.. ... ... .
T Consensus 237 --~~~~~------~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~ 308 (477)
T TIGR01301 237 --PSKHG------EEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGA 308 (477)
T ss_pred --ccccc------hhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHH
Confidence 00000 00000001111111 234555566666666654333222222211 100 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHhhhccc----h-------------hHHHHHHHHH
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGR-KPMTIGTLWFSGFFCLLGSLVKNNG----I-------------WKIVRMICGV 437 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------~~~~~~~~~~ 437 (532)
......++...+.+++..++.+|+|+ |++...+.++.++++....+..... . .....++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 22334445555677788889999985 6666788777777777776544210 0 0125667778
Q ss_pred HHHHHHHhhhhhHhhhccccccc--hhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh--hhhHHHHHHHHHHHHHHHH-
Q 009563 438 MGIFGVAGTYNLLFIYTTELFPT--VVRNAALGCATQAAQLGAILAPFVV-----VLG--GWLPFAVFAACGIIGGLFA- 507 (532)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~p~--~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~--~~~~~~~~~~~~~~~~~~~- 507 (532)
+.|+.....+.+.++++++..++ +..|..+|+.|.+..+.+++..+.. ..| ....+.+.++..++++++.
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999985 4559999999998887766655433 223 3445666667777777665
Q ss_pred hhccCCC
Q 009563 508 FYLPETL 514 (532)
Q Consensus 508 ~~l~~~~ 514 (532)
+.+|+.+
T Consensus 469 ~~~~~~~ 475 (477)
T TIGR01301 469 ILLPRPR 475 (477)
T ss_pred HhCCCCC
Confidence 4567654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-20 Score=181.83 Aligned_cols=318 Identities=14% Similarity=0.095 Sum_probs=210.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccC---CCCc-hHHHHHHHHHHHHHHHHHhhcch------HH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDS---RLGR-KGSLTVVCMMNAVFGCLTAFSPN------YS 182 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~ 182 (532)
+...+++|+ +..++|.+.++..+..++..|+.|.++|| |+|| |+.++++.+..+++.++....++ +.
T Consensus 34 ~~~t~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~ 110 (444)
T PRK09669 34 YFYTDVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII 110 (444)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 345678899 99999999999999999999999999997 3677 56676787777777766554442 45
Q ss_pred HHHHHHHHHHhhccccchhhhheeeccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHH----hh------chHHHHHHHH
Q 009563 183 TYVVLRMLTGFSTGGVGLCAFVLATEPV-GPSKRGAAGMSTFYFFSTGIALLSGIAYI----FQ------TWRALYIASS 251 (532)
Q Consensus 183 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~----l~------~wr~~f~~~~ 251 (532)
.+++..++.+.+.......-.++..|+. ++++|++..++...+..+|..+++.+... +. +|+..+.+.+
T Consensus 111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ 190 (444)
T PRK09669 111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG 190 (444)
T ss_pred HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 6666777777766667766778899988 45889988888888888877776654322 21 6888888888
Q ss_pred HHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhcccc
Q 009563 252 IPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTG 331 (532)
Q Consensus 252 ~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (532)
++.++..++.++..+|.++. .+ +++.+...
T Consensus 191 ii~~v~~~~~~~~~~e~~~~----~~----------------------------------------------~~~~~~~~ 220 (444)
T PRK09669 191 LLGVVLFFCCFFMTKERYTP----EV----------------------------------------------DNSSSVWK 220 (444)
T ss_pred HHHHHHHHHHhCCeEEecCC----CC----------------------------------------------cCCCCHHH
Confidence 87777665556665553210 00 00001122
Q ss_pred chhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccccCc--ch-HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHH
Q 009563 332 SVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQ--TN-LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGT 408 (532)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~ 408 (532)
.++.+++|+.++..+...++.............++..... .+ .........+..+++.++.+++.||+|+|+.+..+
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~ 300 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWT 300 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 5667788887766555444433333222111222222111 11 11222233455667888899999999999998887
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcccccc-------chhhhhHHHHHHHHHHHHHHHH
Q 009563 409 LWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFP-------TVVRNAALGCATQAAQLGAILA 481 (532)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~ 481 (532)
..+..+..+.+.+....+.+ ..++..++.+++.+...+..+++++|..+ .+..|...|+.+....+|..++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg 378 (444)
T PRK09669 301 IVAFVILSALIFFIPPSNVW--LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIG 378 (444)
T ss_pred HHHHHHHHHHHHHhCcchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHH
Confidence 76655444433333322222 45556677888888888999999999875 2334667888888888888888
Q ss_pred HHHH
Q 009563 482 PFVV 485 (532)
Q Consensus 482 p~~~ 485 (532)
|.+.
T Consensus 379 ~~i~ 382 (444)
T PRK09669 379 GAVV 382 (444)
T ss_pred HHHH
Confidence 7766
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-20 Score=183.37 Aligned_cols=376 Identities=12% Similarity=-0.012 Sum_probs=217.4
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-GRKGSLTVVCMMNAVFGCLTAFSP-NYSTYVVLRML 190 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l 190 (532)
..+.+++|+ +..+.+++.+.+........+++|+++|| + |||+.+.++.++.+++.+++++++ +.+.++++|++
T Consensus 46 ~yl~~~lg~---s~~~a~~~~~~~~~~~~~~~~~~G~LaDr-~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l 121 (500)
T PRK09584 46 VYLVKQLGM---SEADSITLFSSFSALVYGLVAIGGWLGDK-VLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMAT 121 (500)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345678999 88888898888877767777899999998 7 999999999999999999998874 56677889999
Q ss_pred HHhhccccchhhhheeecccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHH---HHh
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSK--RGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLL---IIL 262 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~---~~~ 262 (532)
+|++.|...+...+++.|++|+++ |..+.+++..+.++|..++|.+++++. |||+.|++.++..++..+ ...
T Consensus 122 ~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~ 201 (500)
T PRK09584 122 IAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQ 201 (500)
T ss_pred HHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999998999999998654 456788889999999999999999886 999999988765444332 222
Q ss_pred cccccCchhHhhcCCHHHHHHHH------HHHHHHh-CCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhh
Q 009563 263 PFLPESPRWYLVRGKLNEAMKIM------RAIAKSN-GRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVID 335 (532)
Q Consensus 263 ~~~~esp~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (532)
..++|.++. ..+++.+...... -...... ....++.. .................. . ....+
T Consensus 202 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~--~~~~~ 269 (500)
T PRK09584 202 RWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIA-------RMALGVVALGIVVIFGKE--A--FAMKG 269 (500)
T ss_pred HHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHH--H--hhcCH
Confidence 233332110 0000011100000 0000000 00000000 000000000000000000 0 00000
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cc-----Cc--chHHHHHHHHHHHHHHHHHHHHHHHhhh----
Q 009563 336 VIKSPLTRIRLFLAVTINFLCSVVYYGISLNV-----VN-----LQ--TNLYLNVLVNAVAEMPAFTITAVLLDKL---- 399 (532)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~l~d~~---- 399 (532)
.-+++. ...+. .++........+...+..+ .. .+ ...........+..++...+..++.+|.
T Consensus 270 ~~~~~~-~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~ 347 (500)
T PRK09584 270 AARRKM-IVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL 347 (500)
T ss_pred HHHHHH-HHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC
Confidence 111111 11111 1111111111111111110 00 01 1122223334444444445554444444
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHH
Q 009563 400 GRKPMTIGTLWFSGFFCLLGSLVKNN------GIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQA 473 (532)
Q Consensus 400 gr~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 473 (532)
+..+.+.+++++.+++++.+...... ...+ +.+...++.+++.....|...+++.+..|++.||.++|+....
T Consensus 348 ~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~-~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~ 426 (500)
T PRK09584 348 PMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVN-WLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLT 426 (500)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 44466778888888888877665331 1112 5667788889999999999999999999999999999988766
Q ss_pred HHHHHHHHHHHHH---------------hhhhhHHHHHHHHHHHHHHHH
Q 009563 474 AQLGAILAPFVVV---------------LGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 474 ~~~g~~i~p~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 507 (532)
..+|..++..+.. .++...|...+++.++..++.
T Consensus 427 ~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~ 475 (500)
T PRK09584 427 TAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM 475 (500)
T ss_pred HHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6666555544431 124566666666655444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-19 Score=171.73 Aligned_cols=319 Identities=18% Similarity=0.214 Sum_probs=224.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCC-chHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLG-RKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 191 (532)
+..-++.|+ |..|+|.+.++..+...++++++|.++|| ++ +|+++.+..++.++...+....++++.+++..++.
T Consensus 26 ~~~L~~~G~---s~~qIG~l~a~~~~~~i~~~~~~g~~aDr-~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~ 101 (400)
T PF03825_consen 26 PLYLESRGF---SGTQIGILLAVGPLARIVSPPFWGAIADR-FGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLF 101 (400)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455567788 99999999999999999999999999999 65 57888888888888777778888999998888888
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHH-----HHHHhh--chHHHHHHHHHHHHHHHHHHhcc
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSG-----IAYIFQ--TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~-----l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
.+......|...++..+... +++.-.+-.....++|.+++.. +.+... +..+.+++.+...++.. ...+.
T Consensus 102 ~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l~ 178 (400)
T PF03825_consen 102 SFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFALF 178 (400)
T ss_pred HHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHHHh
Confidence 88888888877777777664 2333334444455555544432 222221 22345666665555544 44556
Q ss_pred cccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHH
Q 009563 265 LPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRI 344 (532)
Q Consensus 265 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (532)
+|+.|.. +...+ +.++....+..+++|+|....
T Consensus 179 lp~~~~~---~~~~~--------------------------------------------~~~~~~~~~~~~llk~~~~~~ 211 (400)
T PF03825_consen 179 LPKTPPK---RSAKE--------------------------------------------SVKKLLGLDALKLLKNPRFLV 211 (400)
T ss_pred CCCCccc---cccCC--------------------------------------------CcccccchHHHHHhcCccHHH
Confidence 7776520 00000 000011123457899998888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCcc-h---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 009563 345 RLFLAVTINFLCSVVYYGISLNVVNLQT-N---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGS 420 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~ 420 (532)
.++..++........+...+.++++.+. . .........+.+++..+..+++.+|+|.++++.++.+..++-..++.
T Consensus 212 Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 212 FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777662 2 22233445567888889999999999999999999999999998888
Q ss_pred hhhccchh-HHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHH-HHHHHHHHHHHH
Q 009563 421 LVKNNGIW-KIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQA-AQLGAILAPFVV 485 (532)
Q Consensus 421 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~i~p~~~ 485 (532)
...++... .........+.++..+..+.....++.+..|++.|+++.++++.. ..+|..+|..+.
T Consensus 292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig 358 (400)
T PF03825_consen 292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG 358 (400)
T ss_pred HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 87444322 111222345688888899999999999999999999999998876 457777776666
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-19 Score=175.33 Aligned_cols=323 Identities=15% Similarity=0.111 Sum_probs=209.9
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccC---CCCc-hHHHHHHHHHHHHHHHHHhhcc------hHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDS---RLGR-KGSLTVVCMMNAVFGCLTAFSP------NYST 183 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~ 183 (532)
.+.+.+|+ +..++|.+..+..+.-++..++.|.++|| |+|| |+.++++.+..+++.++....+ .+..
T Consensus 32 yyt~v~Gl---s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~ 108 (473)
T PRK10429 32 YYTDVVGL---SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF 108 (473)
T ss_pred HHHHhcCC---CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34566789 99999999999999999999999999994 1799 6777778888888766664433 2445
Q ss_pred HHHHHHHHHhhccccchhhhheeeccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHh----h------chHHHHHHHHH
Q 009563 184 YVVLRMLTGFSTGGVGLCAFVLATEPV-GPSKRGAAGMSTFYFFSTGIALLSGIAYIF----Q------TWRALYIASSI 252 (532)
Q Consensus 184 l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~------~wr~~f~~~~~ 252 (532)
+++..++.+++.....+...+++.|.. ++++|.+..++...+.++|..+.+.+...+ . +|+...++.++
T Consensus 109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~ 188 (473)
T PRK10429 109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIA 188 (473)
T ss_pred HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 666677778888888888888999998 589999999887777777755554443321 1 57777777777
Q ss_pred HHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccc
Q 009563 253 PSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGS 332 (532)
Q Consensus 253 ~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (532)
+.++..++.++..+|.+.. ... + .+ ++++.+.+..
T Consensus 189 ~~~~~~~~~~~~~~e~~~~----~~~-~--------------------------~~--------------~~~~~~~~~~ 223 (473)
T PRK10429 189 FFIVSTIITLRNVHEVYSS----DNQ-V--------------------------SA--------------EGSHLTLKDI 223 (473)
T ss_pred HHHHHHHHHHcCceecCCc----ccc-c--------------------------cc--------------cccCCCHHHH
Confidence 7666555556556664210 000 0 00 0000011224
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 009563 333 VIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTL 409 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~ 409 (532)
++.+++|+.++..+...++.............++......+ ........++..+++.++.+++.||+|+|+.+..+.
T Consensus 224 ~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~ 303 (473)
T PRK10429 224 VALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGAS 303 (473)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567887766555554444443333322222333222111 222233344667788889999999999999988777
Q ss_pred HHHHHHHHHHHhh--hccchhHHHHHHHHHHHHHHHHhhhhhHhhhcccccc-------chhhhhHHHHHHHHHHHHHHH
Q 009563 410 WFSGFFCLLGSLV--KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFP-------TVVRNAALGCATQAAQLGAIL 480 (532)
Q Consensus 410 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i 480 (532)
.+..++.+.+... ......+ ..++..++.+++.+..++..+++.+|..+ .+..|...|+......+|..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al 382 (473)
T PRK10429 304 IFPVLSCGVLLLMGLAAPHNAL-LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAF 382 (473)
T ss_pred HHHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHH
Confidence 7666555444332 1122221 44556667778888888888999999965 334566888888888888888
Q ss_pred HHHHH
Q 009563 481 APFVV 485 (532)
Q Consensus 481 ~p~~~ 485 (532)
++.+.
T Consensus 383 ~~~i~ 387 (473)
T PRK10429 383 AAFFI 387 (473)
T ss_pred HHHHH
Confidence 77665
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-19 Score=157.83 Aligned_cols=309 Identities=17% Similarity=0.144 Sum_probs=235.2
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
++|++|+|+ |.+..|+++++..+...+.+++..+++.| +|.++.+..++++..++.++-... +.+.++.+-.+.|
T Consensus 36 ~~Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G 110 (395)
T COG2807 36 DEIRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAG 110 (395)
T ss_pred HHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence 899999999 99999999999999999999999999999 999999999999999999999887 8888999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccccC
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~es 268 (532)
.|.+...+..+..|.+.+| |+-+..++++....++|..+++.+...+. +||....+-+.++++.+ +.| +|..
T Consensus 111 ~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl-~~W--lPq~ 186 (395)
T COG2807 111 AGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL-LIW--LPQA 186 (395)
T ss_pred hhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH-HHH--hhhc
Confidence 9999999999999999997 56799999999999999999888877766 79999999898888866 443 3332
Q ss_pred chhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHH
Q 009563 269 PRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFL 348 (532)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (532)
.|. + . .....+..+-..++|+|.-|...+.
T Consensus 187 ~r~-----~--~-------------------------------------------~~~~~~~~~~~~vw~~~~aW~vtLf 216 (395)
T COG2807 187 LRE-----Q--A-------------------------------------------ASIATKLVSVRKVWRSPLAWQVTLF 216 (395)
T ss_pred ccc-----c--c-------------------------------------------cccccccccccccccCchhHHHHHH
Confidence 110 0 0 0000111123457788866655444
Q ss_pred HHHHHHHHHHHHHHhhhccccCcchHH---HHHHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHhhhc
Q 009563 349 AVTINFLCSVVYYGISLNVVNLQTNLY---LNVLVNAVAEMPAFTITAVLLDKL-GRKPMTIGTLWFSGFFCLLGSLVKN 424 (532)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~ 424 (532)
..+..+..+..+-.++....+.+.+.. .......+.+++.++....+.+|. ++|+..+.....+.++...+.+.+.
T Consensus 217 mGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~ 296 (395)
T COG2807 217 MGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG 296 (395)
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh
Confidence 444444433333333443334344333 333455567788889999999874 5677777777788888887777766
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHhhhcccccc-chhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFP-TVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
...++ ..++.|++.++.++...+.+....+ ++..+.-.|+.+.++++-..+||++.
T Consensus 297 ~~~~l-----w~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~ 353 (395)
T COG2807 297 QLPIL-----WALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLF 353 (395)
T ss_pred hHHHH-----HHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhH
Confidence 65432 2578889999999988888777764 45567788888899999999999998
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=180.75 Aligned_cols=335 Identities=11% Similarity=0.049 Sum_probs=217.2
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----chHHHHHHHHHHH-HHHHHHhhcchHHH-HH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLG-----RKGSLTVVCMMNA-VFGCLTAFSPNYST-YV 185 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~-l~ 185 (532)
|.+.+++|+ +..+++...+...+...+-.+ +|+++|| ++ ||+.++++.++.+ ++....+..++... ..
T Consensus 50 ~~l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~ 124 (468)
T TIGR00788 50 PMLTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAA 124 (468)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 677788999 999999999999999999666 9999999 88 7888888887763 44344444455444 44
Q ss_pred HHHHHHHhhccccchhhhheeecccCCCchhHHH---HHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHH
Q 009563 186 VLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAG---MSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLL 259 (532)
Q Consensus 186 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~ 259 (532)
+.+++.+++.+...++..++..|..+ +++.... +......++|.++++.+++.+. +||..|++.+++.++..
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~- 202 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL- 202 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH-
Confidence 48899999999999999999999998 5554433 3333444589999999888876 89999999888877764
Q ss_pred HHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcC
Q 009563 260 IILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKS 339 (532)
Q Consensus 260 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (532)
+..++++|.+.....+.+.++.... ... . ....+.........+..+++
T Consensus 203 ~~~~~~~E~~~~~~~~~~~~~~~~~-~~~----------------~--------------~~~~~~~~~~~~~l~~~l~~ 251 (468)
T TIGR00788 203 FVSNLSKERRAFVRPRIGTYLEMNM-ALL----------------T--------------LGVLANVKVQILGLRGAIQL 251 (468)
T ss_pred HHHHhcccccccccccccccchhhh-hhh----------------h--------------hhHHHHHHHHHHHHHHHHhc
Confidence 5667778853100000000000000 000 0 00000000111234455677
Q ss_pred hHHHHHHHHHHH-HHHHHHHH---HHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 009563 340 PLTRIRLFLAVT-INFLCSVV---YYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFF 415 (532)
Q Consensus 340 ~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~ 415 (532)
|..+..+...++ ........ ++..+..........+......+++.+++..+.+++.+|++.|+.+.++.++.+++
T Consensus 252 ~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~ 331 (468)
T TIGR00788 252 LEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLS 331 (468)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 766654444433 11111111 01111111112234445555666888889999999999999999998888888877
Q ss_pred HHHHHhhhccc------hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 416 CLLGSLVKNNG------IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 416 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.+......... ..........++.+++.+..+.....++.+..|++.+|+.+++.+++.++|..+++.+.
T Consensus 332 ~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 332 SLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred HhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 65543211000 00113444556777777788888899999999999999999999999999999988765
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-18 Score=166.45 Aligned_cols=348 Identities=13% Similarity=0.112 Sum_probs=238.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHH-HHHHHHHHHHHHHHhhc-c-hHHHHHHHHHHHHhhccccchh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSL-TVVCMMNAVFGCLTAFS-P-NYSTYVVLRMLTGFSTGGVGLC 201 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l-~~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~ 201 (532)
..+..++..++..+..++..++.|.++|+ -|+||.+ .+...+..+++.+..+. + +++...+.-++.-++.+...+.
T Consensus 68 ~~s~~~~~~sis~l~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vf 146 (477)
T PF11700_consen 68 TSSLWLYANSISGLLQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVF 146 (477)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999998 6776555 44555555666666664 3 3444444455555677777788
Q ss_pred hhheeecccCCCch--------------------------hHHHHHHHHHHHHHHHHHHHHHHHhh-----------chH
Q 009563 202 AFVLATEPVGPSKR--------------------------GAAGMSTFYFFSTGIALLSGIAYIFQ-----------TWR 244 (532)
Q Consensus 202 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~l~~~l~-----------~wr 244 (532)
..+++.|..+++++ ++..+.-.....+|.++...+...+. +-|
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 88999999999888 89988888888888888777665543 248
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhh
Q 009563 245 ALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELA 324 (532)
Q Consensus 245 ~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (532)
..+.+.++.-++..+..++++||.|+....+..........+++
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l------------------------------------ 270 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL------------------------------------ 270 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH------------------------------------
Confidence 88999999988888888889998764211111111111111111
Q ss_pred hhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccc-cCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 009563 325 TKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVV-NLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLG 400 (532)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~g 400 (532)
...++++.+.|...+.++..+++.-...........+.. .++. +.....+...+.+++|.++.+++.||+|
T Consensus 271 -----~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g 345 (477)
T PF11700_consen 271 -----WRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFG 345 (477)
T ss_pred -----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 124455555565554444444433333322222222222 3332 3344455666788899999999999999
Q ss_pred Cc--hhHHHHHHHHHHHHHHHHh--hh----ccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHH
Q 009563 401 RK--PMTIGTLWFSGFFCLLGSL--VK----NNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQ 472 (532)
Q Consensus 401 r~--~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 472 (532)
.| +++..+..+..+..+...+ .. ....+ .+++..++.|+..+..++..-++.+|+.|+++.+..+|++..
T Consensus 346 ~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~--~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i 423 (477)
T PF11700_consen 346 PKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPW--EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAI 423 (477)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHH--HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 98 7766666555333333222 11 11122 577788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-----Hhh-hhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 009563 473 AAQLGAILAPFVV-----VLG-GWLPFAVFAACGIIGGLFAFYLPETLNK 516 (532)
Q Consensus 473 ~~~~g~~i~p~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 516 (532)
.+...+++||.+. ..+ ....+....++.+++.++...++..+++
T Consensus 424 ~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~ 473 (477)
T PF11700_consen 424 TGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhh
Confidence 9999999999988 233 5667777778888887777777765544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-18 Score=162.42 Aligned_cols=320 Identities=17% Similarity=0.158 Sum_probs=234.8
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccC---CCCc-hHHHHHHHHHHHHHHHHHhhcc------hHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDS---RLGR-KGSLTVVCMMNAVFGCLTAFSP------NYSTY 184 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~l 184 (532)
..+.+|+ ++..+|.+..+.-+--++..|+.|.+.|| |+|| |+.++++.+..++.++++-.++ +....
T Consensus 39 YTdv~Gi---s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya 115 (467)
T COG2211 39 YTDVFGL---SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA 115 (467)
T ss_pred HhcccCC---cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH
Confidence 4567889 99999999999999999999999999997 4888 5677888899999999888776 35567
Q ss_pred HHHHHHHHhhccccchhhhheeecccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhh----------chHHHHHHHHHH
Q 009563 185 VVLRMLTGFSTGGVGLCAFVLATEPVG-PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----------TWRALYIASSIP 253 (532)
Q Consensus 185 ~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----------~wr~~f~~~~~~ 253 (532)
++.-.+.+++.......-.++..|+.+ ++||.+..++-+.+..+|.++...+...+. ||+..-++.+++
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi 195 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI 195 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence 777888999998888888899999886 588999999999999999776555444332 788888888888
Q ss_pred HHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccch
Q 009563 254 SILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSV 333 (532)
Q Consensus 254 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (532)
..+..+.+++-.+|.+.. .+... ...+.+.+..+
T Consensus 196 ~~i~~l~~~~~v~ER~~~--~~~~~--------------------------------------------~~~~~~~~~~~ 229 (467)
T COG2211 196 GVILLLFCFFNVKERVVE--TQPTK--------------------------------------------TGVKLKLKDSF 229 (467)
T ss_pred HHHHHHHHHHHhhcccCc--cccCc--------------------------------------------ccccccHHHHH
Confidence 888877777777764320 00000 00011112244
Q ss_pred hhhhcChHHHHHHHHHHHHHHHH----HHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 009563 334 IDVIKSPLTRIRLFLAVTINFLC----SVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTL 409 (532)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~ 409 (532)
..+++|+.++...+..++..... +...|...+.+................+.+++.++..++.+|+|+|++..++.
T Consensus 230 ~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~ 309 (467)
T COG2211 230 LLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL 309 (467)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence 56788887776655444444333 33334444444444444444555555666777899999999999999999999
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcccccc-------chhhhhHHHHHHHHHHHHHHHHH
Q 009563 410 WFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFP-------TVVRNAALGCATQAAQLGAILAP 482 (532)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p 482 (532)
++.+++.+++.+.+..... +.++..++.+++.+...+..+++++|... .+..|...|...++..+|.+++.
T Consensus 310 ~~~~i~~~~~~f~~~~~~~--l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~ 387 (467)
T COG2211 310 LLLAVGYLLLYFTPAGSVV--LIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG 387 (467)
T ss_pred HHHHHHHHHHHhhcCcchH--HHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999888744332 55666678889999999999999999865 23457788888888888877766
Q ss_pred HHH
Q 009563 483 FVV 485 (532)
Q Consensus 483 ~~~ 485 (532)
.+.
T Consensus 388 ~~~ 390 (467)
T COG2211 388 FIP 390 (467)
T ss_pred HHH
Confidence 544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-18 Score=168.26 Aligned_cols=316 Identities=12% Similarity=0.042 Sum_probs=198.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC----CchHHH-HHHHHHHHHHHHHHh-h----cc--h
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL----GRKGSL-TVVCMMNAVFGCLTA-F----SP--N 180 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~----Grr~~l-~~~~~~~~~~~~~~~-~----~~--~ 180 (532)
+.+.+.+|+ +..++|.+.+...+..++..++.|+++|| . |||+.. .++.+...+.+++.. . ++ .
T Consensus 33 ~y~~~~~gl---~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (448)
T PRK09848 33 SYYTDVAGV---GAAAAGTMLLLVRVFDAFADVFAGRVVDS-VNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK 108 (448)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHhhhhheeeeec-CCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence 345677899 99999999999999999999999999998 5 777644 566555555444432 1 11 2
Q ss_pred HHHHHHHHHHHHhhccccchhhhheeecccCC-CchhHHHHHHHHHH-----HHHHHHHHHHHHHhh-----chHHHHHH
Q 009563 181 YSTYVVLRMLTGFSTGGVGLCAFVLATEPVGP-SKRGAAGMSTFYFF-----STGIALLSGIAYIFQ-----TWRALYIA 249 (532)
Q Consensus 181 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~-----~~G~~~~~~l~~~l~-----~wr~~f~~ 249 (532)
...++...++.+++.+...+...++..+..++ ++|.+..+.-..+. .+|..++|.++.... +|.....+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~ 188 (448)
T PRK09848 109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIV 188 (448)
T ss_pred HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence 33345556677888888777777777776654 67888766655433 345555666655431 12222223
Q ss_pred HHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhcc
Q 009563 250 SSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAV 329 (532)
Q Consensus 250 ~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (532)
.+++.++..++.....||++.. +. ++...
T Consensus 189 ~~v~~~~~~~~~~~~~~e~~~~---~~------------------------------------------------~~~~~ 217 (448)
T PRK09848 189 LAIAGMVLYFICFKSTRENVVR---IV------------------------------------------------AQPSL 217 (448)
T ss_pred HHHHHHHHHHHHHcCcEeccCC---Cc------------------------------------------------cCCCH
Confidence 3333333332334444554210 00 00011
Q ss_pred ccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccccC-cchHHHH---HHHHHHHHHHHHHHHHHHHhhhCCchhH
Q 009563 330 TGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNL-QTNLYLN---VLVNAVAEMPAFTITAVLLDKLGRKPMT 405 (532)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~d~~gr~~~~ 405 (532)
+..++.+++|+.++...+..++............+++.... +.+.... .....++.+++.++.+++.||+|+|+.+
T Consensus 218 ~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~ 297 (448)
T PRK09848 218 KISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTF 297 (448)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 12466788998877665555555544443333444444332 2222111 1222345667888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccch-------hhhhHHHHHHHHHHHHH
Q 009563 406 IGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTV-------VRNAALGCATQAAQLGA 478 (532)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~g~ 478 (532)
..+.++..++.+.+.+.+....+ ..++..++.+++.+...+...++..|..|.+ .+|...|+.+....+|.
T Consensus 298 ~~g~~~~~i~~~~~~~~~~~~~~--~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ 375 (448)
T PRK09848 298 LIGALLGTCGYLLFFWVSVWSLP--VALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQ 375 (448)
T ss_pred HHHHHHHHHHHHHHHHcCchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHH
Confidence 99988887777666654332222 3445566778888888888888988888653 35888999999999998
Q ss_pred HHHHHHH
Q 009563 479 ILAPFVV 485 (532)
Q Consensus 479 ~i~p~~~ 485 (532)
.+++.+.
T Consensus 376 aig~~i~ 382 (448)
T PRK09848 376 AIGGSIP 382 (448)
T ss_pred HHHHHHH
Confidence 8887766
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-19 Score=173.99 Aligned_cols=318 Identities=19% Similarity=0.173 Sum_probs=235.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCchH-HHHHHHHHHHHHHHHHhhc-c-------
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSD----SRLGRKG-SLTVVCMMNAVFGCLTAFS-P------- 179 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~~Grr~-~l~~~~~~~~~~~~~~~~~-~------- 179 (532)
+...+.+|+ ++...|++..+..+-.++..|+.|.++| | +|||| .+++|.++.+++.++.... +
T Consensus 26 ~f~~~~~gl---~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~ 101 (428)
T PF13347_consen 26 YFYTDVLGL---SPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA 101 (428)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence 445567799 9999999999999999999999999999 6 89765 5567888888888887766 4
Q ss_pred hHHHHHHHHHHHHhhccccchhhhheeecccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhh----------chHHHHH
Q 009563 180 NYSTYVVLRMLTGFSTGGVGLCAFVLATEPVG-PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----------TWRALYI 248 (532)
Q Consensus 180 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----------~wr~~f~ 248 (532)
...++.+..++..++.......-.++..|..+ +++|.+..+.-..+..+|.++...+...+. +|++..+
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~ 181 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL 181 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence 23456777788899999998888999999998 478999999998888888865555544432 5999999
Q ss_pred HHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhc
Q 009563 249 ASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEA 328 (532)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (532)
+.+++.++..++..+..+|.++ +.+ +++++.+
T Consensus 182 v~~iv~~v~~~i~~~~~ke~~~------~~~------------------------------------------~~~~~~~ 213 (428)
T PF13347_consen 182 VLAIVGLVFFLITFFFVKERSV------EVT------------------------------------------EQEKKIS 213 (428)
T ss_pred HHHHHHHHHhhhhhheeeeccc------ccc------------------------------------------ccccccc
Confidence 9999988888777888887211 000 0001112
Q ss_pred cccchhhhhcChHHHHHHHHHHHHHHHHHH----HHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhCCchh
Q 009563 329 VTGSVIDVIKSPLTRIRLFLAVTINFLCSV----VYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPM 404 (532)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~ 404 (532)
.+..++++++||.++..+...++.++.... ..|......... ...........+..+++.++.++++||+|+|+.
T Consensus 214 ~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~ 292 (428)
T PF13347_consen 214 LRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV 292 (428)
T ss_pred cccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence 334677888898877666665555544332 223333333222 222333345567778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccc-------hhhhhHHHHHHHHHHHH
Q 009563 405 TIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPT-------VVRNAALGCATQAAQLG 477 (532)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~g 477 (532)
+..+..+.+++.+.+.+....+.+ ..++..++.+++.+..+...+++.+|..+. +..|...|+.+....++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 293 YIIGLLLAALGFLLLFFLGPGSPW--LVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhHH--HHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 999999999998888887633322 577788888999999999999999999863 33588888888888888
Q ss_pred HHHHHHHH
Q 009563 478 AILAPFVV 485 (532)
Q Consensus 478 ~~i~p~~~ 485 (532)
..+++.+.
T Consensus 371 ~~la~~i~ 378 (428)
T PF13347_consen 371 QGLAGAIV 378 (428)
T ss_pred HHHHHHHH
Confidence 77776655
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=155.21 Aligned_cols=362 Identities=12% Similarity=0.015 Sum_probs=219.5
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF---SPNYSTYVVLRM 189 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~ 189 (532)
.+...|.++ +..+..++.+.|.....+-+++.|++.||++|-|..-++-++...++.++++. .+.+|+++++||
T Consensus 68 ~~fk~d~ni---~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF 144 (459)
T KOG4686|consen 68 IDFKLDSNI---EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRF 144 (459)
T ss_pred hhhhccccc---ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhe
Confidence 355566666 67788999999999999999999999999899998877777777888777764 589999999999
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH------HHHHHHHHHHHHHhc
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQTWRALYI------ASSIPSILFLLIILP 263 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~wr~~f~------~~~~~~~~~~~~~~~ 263 (532)
+.|+|.-...++-..|+.-|+..|+.+.++|+.....-+|..+-..+.+++.+.-..++ ..++...+.. .
T Consensus 145 ~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~----~ 220 (459)
T KOG4686|consen 145 LFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEV----K 220 (459)
T ss_pred eeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHH----H
Confidence 99999888888889999999999999999999999998888765555544431111111 0011100000 0
Q ss_pred ccccCchhHhhcC-CHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHH
Q 009563 264 FLPESPRWYLVRG-KLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLT 342 (532)
Q Consensus 264 ~~~esp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (532)
....+-......+ ..+++++.+++- ++. ..+ .++-.-...++. .+
T Consensus 221 tc~~slical~lg~~D~rAerilh~e---~g~-~Ge-----------------------------~pkLtdv~~f~p-pf 266 (459)
T KOG4686|consen 221 TCKQSLICALSLGLSDDRAERILHLE---EGF-LGE-----------------------------EPKLTDVNTFYP-PF 266 (459)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhh---cCc-ccC-----------------------------CcccccccccCc-cH
Confidence 0000000000111 112222221111 000 000 000011112333 35
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhccccCcchHHHH---HHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 009563 343 RIRLFLAVTINFLCSVVY-YGISLNVVNLQTNLYLN---VLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLL 418 (532)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~ 418 (532)
|....++..++....-.+ .+..++...++.+.... ....-..+.+.+.+.|.++||+|++...+.+..+..+..-.
T Consensus 267 w~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~ 346 (459)
T KOG4686|consen 267 WVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHS 346 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhh
Confidence 554444444444332221 22233333344332221 22222345567788999999999998777665555444333
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHH---------hhh
Q 009563 419 GSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVVV---------LGG 489 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~---------~~~ 489 (532)
..+..... .++.+.+.|......-...|..++.+.|++..|++.|+.+.+.++|-.+.|++.. ...
T Consensus 347 ~l~Ft~ls-----Py~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~l 421 (459)
T KOG4686|consen 347 GLFFTFLS-----PYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNL 421 (459)
T ss_pred hHHhhhcc-----HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhH
Confidence 33333332 2355666677666666667888888999999999999999999999999998881 112
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCChhh
Q 009563 490 WLPFAVFAACGIIGGLFAFYLPETLNKPLYD 520 (532)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 520 (532)
...|+..+.+.+....+.+++.++++-.++.
T Consensus 422 e~ffl~~~~~aL~svgil~~~N~kq~gnLN~ 452 (459)
T KOG4686|consen 422 EAFFLIIGLMALTSVGILFYLNKKQSGNLNR 452 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhheeccccCCCCC
Confidence 3345555555666655556665544444443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-17 Score=162.17 Aligned_cols=314 Identities=11% Similarity=0.030 Sum_probs=198.2
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccC---CCCch-HHHHHHHHHHHHHHHHHhhcch------HHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDS---RLGRK-GSLTVVCMMNAVFGCLTAFSPN------YSTY 184 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr---~~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l 184 (532)
..+..|+ ++..+|.+..+.-+--++..|+.|.++|| |+||| +.++++.+..+++.+++...++ ...+
T Consensus 36 yt~~~Gl---~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~ 112 (460)
T PRK11462 36 YTDIFGI---PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA 112 (460)
T ss_pred HHHhhCC---CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 3467889 99999999999999999999999999996 47986 5566677788887776654442 4456
Q ss_pred HHHHHHHHhhccccchhhhheeecccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhh----------chHHHHHHHHHH
Q 009563 185 VVLRMLTGFSTGGVGLCAFVLATEPVG-PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----------TWRALYIASSIP 253 (532)
Q Consensus 185 ~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----------~wr~~f~~~~~~ 253 (532)
++.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+. +|+....+.+++
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii 192 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV 192 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 666777788888888778888899887 689999999999999988877766543322 577777777776
Q ss_pred HHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccch
Q 009563 254 SILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSV 333 (532)
Q Consensus 254 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (532)
.++...+++...+|.++. ++ ++.+.+..+
T Consensus 193 ~~i~~~i~~~~~kE~~~~----~~-----------------------------------------------~~~~~~~~l 221 (460)
T PRK11462 193 AFMMLAFCFFTTKERVEA----PP-----------------------------------------------TTTSMREDL 221 (460)
T ss_pred HHHHHHHHHhcceeccCC----Cc-----------------------------------------------cCCCHHHHH
Confidence 666554555545553210 00 000011245
Q ss_pred hhhhcChHHHHHHHHHHHHHHH----HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 009563 334 IDVIKSPLTRIRLFLAVTINFL----CSVVYYGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTL 409 (532)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~ 409 (532)
+..++|+.++......++.... .....|...+.... ............+..+++.++++++.||+++|+.+..+.
T Consensus 222 ~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~ 300 (460)
T PRK11462 222 RDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN 300 (460)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 6677887765544333333222 12222333333322 111122334445677788899999999999998876555
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcccccc-------chhhhhHHHHHHHHHHHHHHHHH
Q 009563 410 WFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFP-------TVVRNAALGCATQAAQLGAILAP 482 (532)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p 482 (532)
.+..+..+++.+.+..... ..++..++.+++.+...+..+++..|..+ .+..|...+.......+|..+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~ 378 (460)
T PRK11462 301 ALLAVISLAMFFVPMQASI--TMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGG 378 (460)
T ss_pred HHHHHHHHHHHHhchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333322221 22334445566666666666777777765 23334555666677777777766
Q ss_pred HHH
Q 009563 483 FVV 485 (532)
Q Consensus 483 ~~~ 485 (532)
.+.
T Consensus 379 ~i~ 381 (460)
T PRK11462 379 ALI 381 (460)
T ss_pred HHH
Confidence 554
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-18 Score=158.97 Aligned_cols=377 Identities=12% Similarity=0.050 Sum_probs=243.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
+.-++||.+++++++..+.+++....++.. . ......++ +..
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i--------~--------------------------n~~~~~Yg----s~~ 79 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPI--------N--------------------------NYVNSFYG----SSS 79 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhH--------H--------------------------HHHHHHhc----chH
Confidence 456778888888888877777665544444 1 12223333 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc------hHH--HHHHHHHHHHhhccccc
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP------NYS--TYVVLRMLTGFSTGGVG 199 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~ 199 (532)
..-|+.-+|++.+....+++-|+.|+ +|-|...+++..+.++|+.+-..+. .++ ....+..+.+.+.-...
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim 158 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL 158 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence 67799999999999999999999999 9999999999999999998877652 344 67788889888887777
Q ss_pred hhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---------chHH--HHHHHHHHHHHHHHHHhcccccC
Q 009563 200 LCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---------TWRA--LYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 200 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---------~wr~--~f~~~~~~~~~~~~~~~~~~~es 268 (532)
.....+..-|++++||..+..+-.++..+|.+++.++...+. .|-. .|+..+++..+.+++..+..++.
T Consensus 159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~ 238 (480)
T KOG2563|consen 159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKK 238 (480)
T ss_pred ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 666677777999999999999999999999999888877765 4544 35544444444444445555554
Q ss_pred chhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHH
Q 009563 269 PRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFL 348 (532)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (532)
|+...... .+ ..+......+.++.++++.+....+.
T Consensus 239 P~tPps~s---~~-----------------------------------------~~~~~~f~~si~~~~~n~~F~il~~~ 274 (480)
T KOG2563|consen 239 PPTPPSAS---QA-----------------------------------------ALQDASFPKSIKSCFKNRQFIILAIC 274 (480)
T ss_pred CCCCCchh---Hh-----------------------------------------hhhcCcHHHHHHHHHcCccHHHHHHH
Confidence 43110000 00 00001223467888999865543333
Q ss_pred HHHHHHHHHHHHHHhhhccc------cC-cchHHHHHHHHHHHHHHHHHHHHHHHhhhCCch-hHHHHHHHHHHHHHHHH
Q 009563 349 AVTINFLCSVVYYGISLNVV------NL-QTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKP-MTIGTLWFSGFFCLLGS 420 (532)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~-~~~~~~~~~~~~~~~~~ 420 (532)
... ....++..+..+. .+ +...+.......+.++++.++.|.+.||.+.-+ ..+.......++.+.+.
T Consensus 275 ygi----~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~ 350 (480)
T KOG2563|consen 275 YGI----GLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLL 350 (480)
T ss_pred Hhh----hHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 332 2233333332222 11 223445556666778899999999999987644 34444444444422222
Q ss_pred -hhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh----hh
Q 009563 421 -LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG----GW 490 (532)
Q Consensus 421 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~----~~ 490 (532)
........+ +.+....+.+++..+..|+..-+..|..-|..-++..|+.+..+++-+++-.++. ..+ ..
T Consensus 351 ~~t~~~~~~v-iv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~ 429 (480)
T KOG2563|consen 351 TCTLFLGDSV-IVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTF 429 (480)
T ss_pred HhhccCCceE-ehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCc
Confidence 222222222 4566667778888888899999999987666678999999998888777766666 122 22
Q ss_pred hHHHHHHHHHHHHHHHHhhccC
Q 009563 491 LPFAVFAACGIIGGLFAFYLPE 512 (532)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~l~~ 512 (532)
..-+......++..++..++++
T Consensus 430 ~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 430 PANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred cchhHhHHHHHHHHHHHhhhhh
Confidence 2234444555555555555544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=157.37 Aligned_cols=347 Identities=16% Similarity=0.141 Sum_probs=213.1
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHH--HHH-HHHhhc----chH-HHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNA--VFG-CLTAFS----PNY-STYVV 186 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~--~~~-~~~~~~----~~~-~~l~~ 186 (532)
+.++.|+ |..++|.+.++..+...+.+++.|.++|| +|.||-++....+.. .+. +...+. .|. ...++
T Consensus 34 L~~~~GL---s~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~ii 109 (412)
T PF01306_consen 34 LTQVAGL---SGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAII 109 (412)
T ss_dssp HHHHH------HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHH
T ss_pred HccccCC---CHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445899 99999999999999999999999999999 997776554433221 122 222222 222 22333
Q ss_pred HHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhcc
Q 009563 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 187 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
+-+..|+......++.-+++.++. ++.+.-.|-.-+..++|.+++..++|.+. +-+..||+....+++..++.++.
T Consensus 110 g~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~ 187 (412)
T PF01306_consen 110 GGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLL 187 (412)
T ss_dssp TTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHc
Confidence 334445545555565656655554 33445556677788888888888888776 56778888777766666455555
Q ss_pred cccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHH
Q 009563 265 LPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRI 344 (532)
Q Consensus 265 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (532)
.|+.++.....+.. . .++++...++..+++|+|++|.
T Consensus 188 ~~~~~~~~~~~~~~-----------------------------------~--------~~~~~~~~~~~~~l~k~~~fw~ 224 (412)
T PF01306_consen 188 KPDVPPQAEVADAL-----------------------------------G--------AKKDKVSLKDVLSLFKMRNFWF 224 (412)
T ss_dssp ---SSSSS-SSTTS-----------------------------------S--------S------HHHHHHHTTSHHHHH
T ss_pred CCcCchhhhhhccc-----------------------------------c--------cCCCCCcHHHHHHHhcchhHHH
Confidence 44433210000000 0 0000011124568889998887
Q ss_pred HHHHHHHHHHHHHHH-----HHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 009563 345 RLFLAVTINFLCSVV-----YYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFC 416 (532)
Q Consensus 345 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~ 416 (532)
..+............ .|...++ ++.+.. .+.......+.+++...+..++.+|+|.|+.++++..++.+-.
T Consensus 225 ~~l~v~g~~~~Y~vfdqqf~~y~~~~f-~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi 303 (412)
T PF01306_consen 225 FVLFVIGVAAIYDVFDQQFPIYFASFF-QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRI 303 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 655544443332222 1222222 221111 1222334446677888899999999999999999999999998
Q ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHH-HHHHHHHHHHHHHHH-----Hhhhh
Q 009563 417 LLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCA-TQAAQLGAILAPFVV-----VLGGW 490 (532)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~i~p~~~-----~~~~~ 490 (532)
.+.++.++.. ...+.-.+.++-.........-|+.+.+|++..++...+. +...++|.++.+.+. ..|..
T Consensus 304 ~~~~~~~~~~----~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~ 379 (412)
T PF01306_consen 304 IGSGFATNPW----VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ 379 (412)
T ss_dssp HHHHT--SHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence 8888776654 5667777888888888888999999999999988888886 455677777665555 56677
Q ss_pred hHHHHHHHHHHHHHHHH-hhccCCCC
Q 009563 491 LPFAVFAACGIIGGLFA-FYLPETLN 515 (532)
Q Consensus 491 ~~~~~~~~~~~~~~~~~-~~l~~~~~ 515 (532)
.+|++.+++.+...++. +.++++++
T Consensus 380 ~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 380 HTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCc
Confidence 78888888777666555 45554433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-16 Score=153.83 Aligned_cols=351 Identities=12% Similarity=-0.040 Sum_probs=200.1
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-GRKGSLTVVCMMNAVFGCLTAFSP-NYSTYVVLRMLT 191 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~ 191 (532)
.+.+++|+ +..+.+.+.+.+.....++.+++|+++|| + |||++++++.++.+++.++.+..+ +...+.++..+.
T Consensus 35 yL~~~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDR-ilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li 110 (493)
T PRK15462 35 YLTNQLKY---DDNHAYELFSAYCSLVYVTPILGGFLADK-VLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAII 110 (493)
T ss_pred HHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 34567899 99999999999999999999999999999 8 999999999999999987776543 223344445555
Q ss_pred HhhccccchhhhheeecccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 192 GFSTGGVGLCAFVLATEPVGPS--KRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
++|.|...+...++++|.+|++ +|...+++...+.++|..++|.+.+++. ||++.|.+.++..++.. +.+++.+
T Consensus 111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l-i~~~~~~ 189 (493)
T PRK15462 111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL-VIFLCGN 189 (493)
T ss_pred HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH-HHHHHhh
Confidence 5667777777788999999875 6899999999999999999999999986 99999998765444333 3322211
Q ss_pred cCc-hh--HhhcCCHHHHHH--H------HH----HHHHHhCCCCCccccccchhhhhhhhhc--C-c-cchhhhhhhhh
Q 009563 267 ESP-RW--YLVRGKLNEAMK--I------MR----AIAKSNGRHLPDGVVLMLDDEQENDASN--G-K-QNYKEELATKE 327 (532)
Q Consensus 267 esp-~~--~~~~~~~~~~~~--~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~ 327 (532)
+.. +. ...+...++... . .. .+.... ..++....... . . -.+--.....
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~- 257 (493)
T PRK15462 190 RHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVL-----------FWKEWSVYALIVATIIGLGVLAKIYRK- 257 (493)
T ss_pred hhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 110 00 000000000000 0 00 000000 00000000000 0 0 0000000000
Q ss_pred ccccchhhhhcChH--HHHHHHHHHHHHHHHHHHHHHhhhcccc--------CcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 009563 328 AVTGSVIDVIKSPL--TRIRLFLAVTINFLCSVVYYGISLNVVN--------LQTNLYLNVLVNAVAEMPAFTITAVLLD 397 (532)
Q Consensus 328 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~d 397 (532)
+ .+ +.-|++. ....++...+++.........+.++..+ ..........+..+..++..++.+++-.
T Consensus 258 ~--~~--~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~ 333 (493)
T PRK15462 258 A--EN--QKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVK 333 (493)
T ss_pred c--CC--HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 0 00 0001110 0111111112222211111122221111 1112233334455555556666666655
Q ss_pred hhCC--ch-----hHHHHHHHHHHHHHHHHhhh---c--cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhh
Q 009563 398 KLGR--KP-----MTIGTLWFSGFFCLLGSLVK---N--NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNA 465 (532)
Q Consensus 398 ~~gr--~~-----~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 465 (532)
|..| |. -+.++.++.+++++++.+.. + .....++.+...++..++.-...|+..+.++++.|++.++.
T Consensus 334 ~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~ 413 (493)
T PRK15462 334 ESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGV 413 (493)
T ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHH
Confidence 6532 21 25677777777776665421 1 11122256677788899999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHH
Q 009563 466 ALGCATQAA-QLGAILAPFVV 485 (532)
Q Consensus 466 ~~g~~~~~~-~~g~~i~p~~~ 485 (532)
.+|+..... .+|..++..+.
T Consensus 414 ~mg~w~l~~~~~~~~~~g~~~ 434 (493)
T PRK15462 414 LTGIYMLLSGAIANYLAGVIA 434 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999986643 56666665554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-16 Score=143.82 Aligned_cols=345 Identities=13% Similarity=0.092 Sum_probs=240.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHHHhhcch---HHHHHHHHHHHHhhccccch
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKG-SLTVVCMMNAVFGCLTAFSPN---YSTYVVLRMLTGFSTGGVGL 200 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~-~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~ 200 (532)
+.+..+...++..+..++-++..|.++|+ .|+|| .+-....+..++.++..++++ ++..++...+..++.....+
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~V 134 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNV 134 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhe
Confidence 56788999999999999999999999998 78765 455555556666666666654 44556667788888888888
Q ss_pred hhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---------------------chHHHHHHHHHHHHHHHH
Q 009563 201 CAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---------------------TWRALYIASSIPSILFLL 259 (532)
Q Consensus 201 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---------------------~wr~~f~~~~~~~~~~~~ 259 (532)
.-.+++.+..++++-++..++-.....+|..+..++..... .-|..+.+.++..++..+
T Consensus 135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i 214 (438)
T COG2270 135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL 214 (438)
T ss_pred ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence 88999999999988888877766666666655444321110 468888999999888888
Q ss_pred HHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcC
Q 009563 260 IILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKS 339 (532)
Q Consensus 260 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (532)
..++..++.++.. .+.....++..+++ +.+++++.++
T Consensus 215 Pm~~~v~~~~~~~--~~~~~~l~~g~k~L-----------------------------------------~~t~k~i~~~ 251 (438)
T COG2270 215 PMILNVHDAEKIS--SPPPTALRNGFKEL-----------------------------------------KSTFKEIRGR 251 (438)
T ss_pred HHHhccccccccc--ccchHHHHHHHHHH-----------------------------------------HHHHHHHhcc
Confidence 8888888765310 00001111111111 1245566666
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHhhhccccCc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 009563 340 PLTRIRLFLAVTINFLC-SVVYYGISLNVVNLQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFF 415 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~ 415 (532)
+...+.++..+++.=.. .....+..+....++ .+.........+..++|+++.|++.+|+|.|+++..+.++..+.
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA 331 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence 65544444444333222 222222222222233 34445556667788899999999999999999999998888888
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh-h
Q 009563 416 CLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG-G 489 (532)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~-~ 489 (532)
++...+..... .++++..+.++..+..++..-++..+++|+++.+..+|+++..+....+++|++. .++ .
T Consensus 332 ~~~~~~~~~~~----~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~ 407 (438)
T COG2270 332 ALYLIFLEGEL----DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS 407 (438)
T ss_pred HHHHHHccccH----HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 87777766543 4667778889999999999999999999999999999999999999999999998 122 3
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 009563 490 WLPFAVFAACGIIGGLFAFYLPETLNKP 517 (532)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 517 (532)
...+.....+.+++.+..+.+|+.++++
T Consensus 408 r~g~~~i~vll~iGl~~L~~v~~~~~~~ 435 (438)
T COG2270 408 RAGVLSIIVLLLIGLLLLLRVKVPGRRE 435 (438)
T ss_pred hhHHHHHHHHHHhhHhhEEeecCCCCcc
Confidence 4455666666666666666777654443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-16 Score=144.67 Aligned_cols=253 Identities=8% Similarity=-0.051 Sum_probs=167.9
Q ss_pred hcchHHHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Q 009563 177 FSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--------------- 241 (532)
Q Consensus 177 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--------------- 241 (532)
..++|+.++++-++.|.|.+...+....++.+..+++++.+.+++.+.+.++|..++|.+++.+.
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999988544
Q ss_pred ----chHHHHHHHHHHHHHHHHHH-hcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCc
Q 009563 242 ----TWRALYIASSIPSILFLLII-LPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGK 316 (532)
Q Consensus 242 ----~wr~~f~~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (532)
+|+++|++.+.+.++..++. +..+||.++ +.++ +. ..+
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~----------------------------~~---~~~ 128 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA----------------------------RV---SSG 128 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc----------------------------cc---ccc
Confidence 58999997766655544222 222343210 0000 00 000
Q ss_pred cchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccc---Ccc---hHHHHHHHHHHHHHHHHH
Q 009563 317 QNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVN---LQT---NLYLNVLVNAVAEMPAFT 390 (532)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~ 390 (532)
+. ...++.+++|..+...+..+++...........+.++.+ .+. ...........+.++|++
T Consensus 129 ~~------------~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~ 196 (310)
T TIGR01272 129 DT------------TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRF 196 (310)
T ss_pred cc------------cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 011234455555544333333332322222222333321 122 223334555567789999
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHH
Q 009563 391 ITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCA 470 (532)
Q Consensus 391 ~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 470 (532)
+++++.||+++|+.+.++..+..++.++...... . .......+.+++.+..+|...+...+..|++ .+++.++.
T Consensus 197 ~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~--~---~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~ 270 (310)
T TIGR01272 197 IGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG--Y---VAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL 270 (310)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH
Confidence 9999999999999888887777776655544332 1 2234555788999999999999999988764 46666765
Q ss_pred HHHHHHHHHHHHHHH
Q 009563 471 TQAAQLGAILAPFVV 485 (532)
Q Consensus 471 ~~~~~~g~~i~p~~~ 485 (532)
..+.+|+++.|.+.
T Consensus 271 -~~~~~Gg~i~P~l~ 284 (310)
T TIGR01272 271 -CLAIVGGAIVPLLQ 284 (310)
T ss_pred -HHHHhcchHHHHHH
Confidence 56778999999866
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=145.48 Aligned_cols=148 Identities=26% Similarity=0.219 Sum_probs=124.8
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-hHHHHHHHHHHHHHHHHH-hhc---c-hHHHHHHHHHHH
Q 009563 118 QWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGR-KGSLTVVCMMNAVFGCLT-AFS---P-NYSTYVVLRMLT 191 (532)
Q Consensus 118 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~ 191 (532)
|.+. +.+..|++.++..+|.+++++..|++..| .|. |+.++.|.++..++.++. ++. + ..+.++++|++.
T Consensus 65 D~~A---~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~ 140 (488)
T KOG2325|consen 65 DPTA---TATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILT 140 (488)
T ss_pred CCCC---CcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHc
Confidence 4555 77889999999999999999999999999 676 888999999999999888 332 3 678999999999
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----c-----------hHHHHHHHHHHHH
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----T-----------WRALYIASSIPSI 255 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----~-----------wr~~f~~~~~~~~ 255 (532)
|+|.|. .....+|+++-...++|.++++....+..+|.++||.++..+. | +..+-|+.+++.+
T Consensus 141 Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i 219 (488)
T KOG2325|consen 141 GVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWI 219 (488)
T ss_pred CcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHH
Confidence 998765 5567889999888999999999999999999999998887765 2 2346678888888
Q ss_pred HHHHHHhcccccCch
Q 009563 256 LFLLIILPFLPESPR 270 (532)
Q Consensus 256 ~~~~~~~~~~~esp~ 270 (532)
+.+++..++++|.++
T Consensus 220 ~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 220 IYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHhheeeccc
Confidence 888788888888754
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.3e-13 Score=122.55 Aligned_cols=314 Identities=14% Similarity=0.060 Sum_probs=204.1
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----ch-HHHHHHHHHHHHHHHHHhhc-----c---
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLG-----RK-GSLTVVCMMNAVFGCLTAFS-----P--- 179 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~G-----rr-~~l~~~~~~~~~~~~~~~~~-----~--- 179 (532)
.+..|+++ .....+.+.+..++..- ..+.+|+.+|+ .+ || +.+..|.++...+..+..++ .
T Consensus 5 VMIvEL~v---pA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~ 79 (403)
T PF03209_consen 5 VMIVELGV---PAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQ 79 (403)
T ss_pred hHHHHhcc---HHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 46678999 88999998888877654 69999999998 78 66 45566666666666555442 2
Q ss_pred ----hH----HHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHH--
Q 009563 180 ----NY----STYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRA-- 245 (532)
Q Consensus 180 ----~~----~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~-- 245 (532)
+. ....+...+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+.+.+. .-|.
T Consensus 80 ~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~ 159 (403)
T PF03209_consen 80 QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQ 159 (403)
T ss_pred ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence 11 234556778899999999999999999999999999999999999999999999888765 2222
Q ss_pred HHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhh
Q 009563 246 LYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELAT 325 (532)
Q Consensus 246 ~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (532)
.+...+++.++.. +...+-.|.++.... ....++
T Consensus 160 v~~~~a~i~~~l~-~ia~wg~E~r~~~~~---------------------------------------------~~~~~~ 193 (403)
T PF03209_consen 160 VIQGVALIALLLN-LIALWGQEPRRSRRA---------------------------------------------AAAERP 193 (403)
T ss_pred HHHHHHHHHHHHH-HHHHHhcccCCcccc---------------------------------------------cCCCCC
Confidence 2222233333322 222222332110000 000000
Q ss_pred hhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccccC-----cc---hHHHHHHHHHHHHHHHHHHHHHHHh
Q 009563 326 KEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNL-----QT---NLYLNVLVNAVAEMPAFTITAVLLD 397 (532)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~l~d 397 (532)
+......++++..+|..++.+...++..+..+ .....++-+ +. +........+.+.++|..+.+++..
T Consensus 194 ~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~----~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~ 269 (403)
T PF03209_consen 194 RPPFREAWRQVWASPQARRFFVFLFLGTLAFF----MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS 269 (403)
T ss_pred CccHHHHHHHHHhCCChhHHHHHHHHHHHHHH----hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11122355666777776665555444443332 222222222 22 2233345566778888888888776
Q ss_pred -hhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHH
Q 009563 398 -KLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQL 476 (532)
Q Consensus 398 -~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 476 (532)
|.++++...++..+..+++.++.+.......+ .+....++.|++.+.......+...+...++..|..+|.-...+.+
T Consensus 270 ~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~-~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~ 348 (403)
T PF03209_consen 270 RRLGKKRTAALGCLLGALAFALIILAGPLGSPW-LFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAI 348 (403)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHH
Confidence 57778887888888887777766654333222 6777888899998888888888889999888889988887776654
Q ss_pred HHHHHHH
Q 009563 477 GAILAPF 483 (532)
Q Consensus 477 g~~i~p~ 483 (532)
...++..
T Consensus 349 A~Glg~~ 355 (403)
T PF03209_consen 349 ARGLGTF 355 (403)
T ss_pred HHHHHHH
Confidence 4443333
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-13 Score=129.38 Aligned_cols=380 Identities=14% Similarity=0.041 Sum_probs=222.5
Q ss_pred eecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHh
Q 009563 116 VTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP--NYSTYVVLRMLTGF 193 (532)
Q Consensus 116 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~ 193 (532)
.+.+|+ ++++..-+.++|.--.-+..+++|+++||.+|+|+++..|.++..+|.++.+.+. +...++++-++.++
T Consensus 53 ~~gLg~---~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~i 129 (498)
T COG3104 53 GDGLGF---DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIV 129 (498)
T ss_pred cccCCc---ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHh
Confidence 334668 8888888888888888889999999999989999999999999999999999884 78899999999999
Q ss_pred hccccchhhhheeecccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccccc-
Q 009563 194 STGGVGLCAFVLATEPVGPS--KRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPE- 267 (532)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~e- 267 (532)
|.|..-+....++.|.+|++ +|-..++++.++.++|..++|.+.+++. ||...|.+.++-..+.+ +.+...+.
T Consensus 130 G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl-~~f~~~~r~ 208 (498)
T COG3104 130 GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGL-VIFLLGRRH 208 (498)
T ss_pred ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HHHHHccch
Confidence 99999999999999999864 3677788999999999999999999987 99999988877666655 33333321
Q ss_pred ---CchhHhhcC-CHHHHH----HHHHHHHHHhCCCCCccccccchhhhhhhhhcCc---cchhhhhhhhhccccchhhh
Q 009563 268 ---SPRWYLVRG-KLNEAM----KIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGK---QNYKEELATKEAVTGSVIDV 336 (532)
Q Consensus 268 ---sp~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 336 (532)
++.....+. +..+.. .....+.... .-.....+.-....... .......+..+.++ ...+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~e- 279 (498)
T COG3104 209 VKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL-------LTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPK-VFDE- 279 (498)
T ss_pred hcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cHHH-
Confidence 110000000 011111 0000000000 00000000000000000 00000000000000 0000
Q ss_pred hcCh--HHHHHHHHHHHHHHH-----HHHHHHHhhhcccc---CcchHHHHHHHHHHHHHHHHHHHHHHHhhhCCc----
Q 009563 337 IKSP--LTRIRLFLAVTINFL-----CSVVYYGISLNVVN---LQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRK---- 402 (532)
Q Consensus 337 ~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~---- 402 (532)
|++ .....++...++|.. .+...|.......+ ........-....+.-++..++..++..|.+++
T Consensus 280 -r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~p 358 (498)
T COG3104 280 -RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQP 358 (498)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCC
Confidence 001 011112222222222 12222332222222 112233333444455555666666666664332
Q ss_pred ---hhHHHHHHHHHHHHHHHHhh---h---ccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHH
Q 009563 403 ---PMTIGTLWFSGFFCLLGSLV---K---NNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQA 473 (532)
Q Consensus 403 ---~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 473 (532)
.-+.++..++..+.+++... . ....+.++.+...++..++.-...|+..+++....|+...+..++.....
T Consensus 359 s~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt 438 (498)
T COG3104 359 STPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLT 438 (498)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 12345555555555555544 1 11122236677788889999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHH-----------HhhhhhHHHHHHHHHHHHHHHHhh
Q 009563 474 AQLGAILAPFVV-----------VLGGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 474 ~~~g~~i~p~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
...|..++..+. .......|...+...++..+..+.
T Consensus 439 ~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 439 VAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred HHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 776766654444 223455677777766665555443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=146.31 Aligned_cols=170 Identities=14% Similarity=0.009 Sum_probs=130.6
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHH---HhhcchHHHHHHHHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCL---TAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~ 191 (532)
+++++|+ +..+.++..+...++..++.++.|+++|| +|||+.+..+.++..++.+. ...+++...++++|++.
T Consensus 277 l~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (490)
T PRK10642 277 LSHNLHY---SEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLML 352 (490)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3456788 77778888888999999999999999999 99999988887654443332 22345677888899999
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhccccc
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPE 267 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~e 267 (532)
|++.+........++.|.+|++.|++.++.......++..++|.+.+++. +|+.++++..++.++.. +..+++||
T Consensus 353 g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~-~~~~~~pe 431 (490)
T PRK10642 353 AVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL-ITGVTMKE 431 (490)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHHhcc
Confidence 98877777777788889999999999999744444555567777776654 57877777776666655 45567799
Q ss_pred CchhHhhc-----CCHHHHHHHHHHHH
Q 009563 268 SPRWYLVR-----GKLNEAMKIMRAIA 289 (532)
Q Consensus 268 sp~~~~~~-----~~~~~~~~~~~~~~ 289 (532)
+|+|+..+ +|.+|+++.+.+++
T Consensus 432 s~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 432 TANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred ccCCCCCCccccccchhhHHHHhhccc
Confidence 99998765 88899998888774
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=138.39 Aligned_cols=343 Identities=11% Similarity=0.074 Sum_probs=224.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc-------------
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP------------- 179 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~------------- 179 (532)
.+|++.|++ +..+.|++.+.+=++..+...+..+++-| .-|-+.+-+|+++.+++++++++-+
T Consensus 121 ttiErRF~i---~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~ 196 (735)
T KOG3626|consen 121 TTIERRFKI---SSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI 196 (735)
T ss_pred hhhhhhcCC---CCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence 799999999 99999999999999999999999999998 7888999999999999999987620
Q ss_pred ------h--------------------------------H-HHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHH
Q 009563 180 ------N--------------------------------Y-STYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGM 220 (532)
Q Consensus 180 ------~--------------------------------~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 220 (532)
+ + ..++++.++.|+|....++...+|+-|...+++-+..+|
T Consensus 197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg 276 (735)
T KOG3626|consen 197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG 276 (735)
T ss_pred hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence 0 2 257788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----------------------chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCH
Q 009563 221 STFYFFSTGIALLSGIAYIFQ----------------------TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKL 278 (532)
Q Consensus 221 ~~~~~~~~G~~~~~~l~~~l~----------------------~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~ 278 (532)
+......+|.++|.++++++. -|..-|++.+.+.++.. +.++++|...+ ...+.
T Consensus 277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a-~p~f~fPk~lp---~~~~~ 352 (735)
T KOG3626|consen 277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA-VPLFFFPKELP---KSQKR 352 (735)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH-HHHHhCcccCc---ccccc
Confidence 999999999999999999865 35566777777777777 55566665432 11111
Q ss_pred HHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHH
Q 009563 279 NEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSV 358 (532)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (532)
.+++ +. + ...++. ...+......+..++.+...+++++||.+....+...+-......
T Consensus 353 ~~~~----~~---~--~~k~~~-------------~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G 410 (735)
T KOG3626|consen 353 KRAR----DL---H--VLKTES-------------GGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITG 410 (735)
T ss_pred chhh----hh---c--cccccc-------------ccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 0000 00 0 000000 000000111112223445788899999766555444444333332
Q ss_pred HHHHhh-hccccCcchHHHHHHHHH----HHHHHHHHHHHHHHhhhCC--chhHHHHHHHHHHHHHH---HHhh------
Q 009563 359 VYYGIS-LNVVNLQTNLYLNVLVNA----VAEMPAFTITAVLLDKLGR--KPMTIGTLWFSGFFCLL---GSLV------ 422 (532)
Q Consensus 359 ~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~d~~gr--~~~~~~~~~~~~~~~~~---~~~~------ 422 (532)
....++ +.-.+++.+.+.+..+.+ -+..+|.+++|++++|+.. |....+.++...+.++. ..+.
T Consensus 411 ~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~ 490 (735)
T KOG3626|consen 411 YITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSP 490 (735)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCc
Confidence 222333 333344554444443333 2344788899999998743 34443333333333332 2221
Q ss_pred -----------------h-----------------------------------------cc------------c------
Q 009563 423 -----------------K-----------------------------------------NN------------G------ 426 (532)
Q Consensus 423 -----------------~-----------------------------------------~~------------~------ 426 (532)
. .. .
T Consensus 491 ~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~ 570 (735)
T KOG3626|consen 491 VAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGN 570 (735)
T ss_pred ccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCC
Confidence 0 00 0
Q ss_pred ------------h-hHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHH-HHHHHHHHHH
Q 009563 427 ------------I-WKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQ-LGAILAPFVV 485 (532)
Q Consensus 427 ------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~i~p~~~ 485 (532)
. ....+++.+++..+..+......+.++...+|+|+|..++|+..++.. +|.+-+|++.
T Consensus 571 ~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIif 643 (735)
T KOG3626|consen 571 GSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIF 643 (735)
T ss_pred ceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhh
Confidence 0 012334444444555555667778888999999999999999988765 4555677776
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-16 Score=159.67 Aligned_cols=352 Identities=13% Similarity=0.101 Sum_probs=3.0
Q ss_pred CCCCceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc----------
Q 009563 110 GDGSSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP---------- 179 (532)
Q Consensus 110 ~~~~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~---------- 179 (532)
..+++|+++|++ +..+.|++.+.+-++..+..++..++.+| ..|-|.+.+|.++.+++++++++-+
T Consensus 24 ~~lttiErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~ 99 (539)
T PF03137_consen 24 SSLTTIERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE 99 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence 334899999999 99999999999999999999999999998 6777899999999999998876410
Q ss_pred ----------------------------------------hHHHHHHHHHHHHhhccccchhhhheeecccCCCchhHHH
Q 009563 180 ----------------------------------------NYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAG 219 (532)
Q Consensus 180 ----------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 219 (532)
-+..++++.++.|+|....++...+|+-|..++++-+..+
T Consensus 100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi 179 (539)
T PF03137_consen 100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI 179 (539)
T ss_dssp ----------------------------------------------------SSS-------------------------
T ss_pred ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence 0346888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-------------------------chHHHHHHHHHHHHHHHHHHhcccccCchhHhh
Q 009563 220 MSTFYFFSTGIALLSGIAYIFQ-------------------------TWRALYIASSIPSILFLLIILPFLPESPRWYLV 274 (532)
Q Consensus 220 ~~~~~~~~~G~~~~~~l~~~l~-------------------------~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~ 274 (532)
|+......+|.++|.++++.+. .|-.-|++.+++.++.. +.++++|+.-+ .
T Consensus 180 Gi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a-ipl~~FPk~lp---~ 255 (539)
T PF03137_consen 180 GILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA-IPLFFFPKKLP---G 255 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH-HHHHcCCccCC---C
Confidence 9999999999999999988654 14445556666666655 44445554321 1
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHH
Q 009563 275 RGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINF 354 (532)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (532)
..+.++.++. + +.+ .++...+...+++..+...+..+......+++++||.+....+......+
T Consensus 256 ~~~~~~~~~~-~---~~~------------~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~ 319 (539)
T PF03137_consen 256 TSERQEEKES-S---ERK------------EEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccchhhh-h---hcc------------hhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 1000000000 0 000 00000000000000001112233445677889999876655544444444
Q ss_pred HHH-HHHHHhhhccccCcchHHHHHHHHH----HHHHHHHHHHHHHHhhhC--CchhHHHHHHHHHHHHHH---HHhh--
Q 009563 355 LCS-VVYYGISLNVVNLQTNLYLNVLVNA----VAEMPAFTITAVLLDKLG--RKPMTIGTLWFSGFFCLL---GSLV-- 422 (532)
Q Consensus 355 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~d~~g--r~~~~~~~~~~~~~~~~~---~~~~-- 422 (532)
... +..|..-+...+++.+......+.+ .+..+|.+++|++.+|++ .|..+....+...+..+. +.+.
T Consensus 320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C 399 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGC 399 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecC
Confidence 332 2333333333334444333333333 345588999999999974 344433333333332222 1111
Q ss_pred ----------hc----------------------------------c-chhHHHHHHHHHHHHHHHHhhhhhHhhhcccc
Q 009563 423 ----------KN----------------------------------N-GIWKIVRMICGVMGIFGVAGTYNLLFIYTTEL 457 (532)
Q Consensus 423 ----------~~----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (532)
+. . ......+++..++..+..+.............
T Consensus 400 ~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~ 479 (539)
T PF03137_consen 400 PNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRC 479 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeecc
Confidence 00 0 00111233333444444555556666777889
Q ss_pred ccchhhhhHHHHHHHHHH-HHHHHHHHHH
Q 009563 458 FPTVVRNAALGCATQAAQ-LGAILAPFVV 485 (532)
Q Consensus 458 ~p~~~r~~~~g~~~~~~~-~g~~i~p~~~ 485 (532)
+|+++|+.+.|+...+.. +|.+-+|++.
T Consensus 480 V~~~~rs~AlGv~~~~~rllg~IPgPIif 508 (539)
T PF03137_consen 480 VPPEQRSFALGVQWLIIRLLGFIPGPIIF 508 (539)
T ss_dssp -----------------------------
T ss_pred CChhhcchhhhHHHHHHHhhcCcchHHHH
Confidence 999999999999988765 4666688776
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=120.47 Aligned_cols=135 Identities=24% Similarity=0.318 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccC
Q 009563 132 VQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVG 211 (532)
Q Consensus 132 ~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 211 (532)
+.+.+.++..++.++.|++.|| +|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 3455678889999999999999 999999999999999999999899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccccc
Q 009563 212 PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPE 267 (532)
Q Consensus 212 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~e 267 (532)
+++|++..++......+|..+++.+.+.+. +|++.+++.++..++..+..+++.||
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999998886 89999999888887777566666665
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-13 Score=130.43 Aligned_cols=363 Identities=15% Similarity=0.143 Sum_probs=214.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-----CchHHHHHHHHHHHHHHHHHhhc----chHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-----GRKGSLTVVCMMNAVFGCLTAFS----PNYST 183 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~ 183 (532)
|.+.+++|+ ++.+...+.+...+...+ -+++|.++|- + .||+.++++.++..++.+..+.. .+...
T Consensus 14 ~~l~~~l~l---s~~~~~~~~~~~~lPw~~-Kp~~g~lsD~-~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 14 PFLKDDLGL---SPAQLQRLSSLASLPWSI-KPLYGLLSDS-FPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHhCchHH-hhhHHhhccc-ccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 677899999 999999999988888765 6788999997 4 46777788888876666655543 35667
Q ss_pred HHHHHHHHHhhccccchhhhheeecccC--CCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHH
Q 009563 184 YVVLRMLTGFSTGGVGLCAFVLATEPVG--PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 184 l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
..+.-++..+|.+.....+-+.+.|... ++.||...+.......+|.+++..++|.+. ++|..|.+.+++.++..
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 7777788889999999999999999874 334778888888889999999999888877 88889988888877776
Q ss_pred HHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhc
Q 009563 259 LIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIK 338 (532)
Q Consensus 259 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (532)
+...+..+|.+. .+.++... .. ++.........+......++.++
T Consensus 169 ~~~~~~~~e~~~-----~~~~~~~~------------~~------------------~~~~~~~~~~~~~~~~~l~~~~~ 213 (433)
T PF03092_consen 169 IVALFLLEERKV-----RPADEVFS------------FG------------------KEEVPCLFGSFREQLSELWRALQ 213 (433)
T ss_pred HHHHHhhhhccc-----cccchhhc------------cc------------------ccccchhhHHHHHHHHHHHHHHh
Confidence 555666555211 00000000 00 00000000000111224566677
Q ss_pred ChHHHHHHH-HHHHHHHHHHH----HHHHhhhccccCcchHH---HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 009563 339 SPLTRIRLF-LAVTINFLCSV----VYYGISLNVVNLQTNLY---LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLW 410 (532)
Q Consensus 339 ~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~ 410 (532)
.+..+...+ ..++....... .+|.........+.+.. ....+..++.++|..+......+..-|+++....+
T Consensus 214 ~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~ 293 (433)
T PF03092_consen 214 QRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTL 293 (433)
T ss_pred hhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 776665544 22221111110 11111111110012222 22233334445555555555555555666665555
Q ss_pred HHHHHHHHHHhh-hccc------hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 009563 411 FSGFFCLLGSLV-KNNG------IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPF 483 (532)
Q Consensus 411 ~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~ 483 (532)
+..+..+.-... ...+ ..+ ..+.-.++..+.....+-....+++|+.|+...|+.+++..++.++|..++..
T Consensus 294 ~~~~~~l~~~~lv~~~n~~~Gi~d~~-f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~ 372 (433)
T PF03092_consen 294 VSVLASLFDLLLVTRWNLDLGIPDQW-FALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSST 372 (433)
T ss_pred HHHHHhcccEEEEEEEeeeeCcCCeE-EEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 554443322111 1100 000 22233444555555666667788999999999999999999999998877766
Q ss_pred HH-----Hhh--------hhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 009563 484 VV-----VLG--------GWLPFAVFAACGIIGGLFAFYLPETLNK 516 (532)
Q Consensus 484 ~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 516 (532)
+. ..+ .....++..++.++...+..++|+.++.
T Consensus 373 lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~~ 418 (433)
T PF03092_consen 373 LGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKRI 418 (433)
T ss_pred HHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCchh
Confidence 66 111 2233444455555555556677765443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-11 Score=119.84 Aligned_cols=302 Identities=16% Similarity=0.149 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhc--cccchhhhheeecccCC
Q 009563 135 LFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFST--GGVGLCAFVLATEPVGP 212 (532)
Q Consensus 135 ~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~--~~~~~~~~~~i~~~~~~ 212 (532)
...+...+.++..|.++|| +|||..+....+...+..+...+.. +++++ +.|+.. +.......++++|....
T Consensus 70 ~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~ 143 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSE 143 (463)
T ss_pred hhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccch
Confidence 4566778899999999999 9999999999999888888777765 33333 444433 34456678899999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHHHH
Q 009563 213 SKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIA 289 (532)
Q Consensus 213 ~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~ 289 (532)
++|....++....+..+..++|.+++.+. |.-..|++..+..++..+...+++||+-.. +.+.++
T Consensus 144 ~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~~--------- 211 (463)
T KOG2816|consen 144 EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSDA--------- 211 (463)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---cccccc---------
Confidence 99999999999999999999999999887 777789999999888888889999997421 000000
Q ss_pred HHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHH-----Hhh
Q 009563 290 KSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYY-----GIS 364 (532)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 364 (532)
+..+. ....... . .....+....+ ....+..+...+..+.....-. ...
T Consensus 212 -----~~~~~------------~~~~~~~-----~---~~~~~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~ 265 (463)
T KOG2816|consen 212 -----TLREL------------TPGSLDS-----S---HVADAFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLL 265 (463)
T ss_pred -----ccccc------------CCCcccc-----h---hhhhhhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEE
Confidence 00000 0000000 0 00001111111 1111112222222222211111 111
Q ss_pred hcccc-Ccch---HHHHHHHHHHHHHHHHHHHH-HHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 009563 365 LNVVN-LQTN---LYLNVLVNAVAEMPAFTITA-VLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMG 439 (532)
Q Consensus 365 ~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~-~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (532)
++... ++.+ ........+....++.++.. .+...++.|++...+.....+..+.+.+....+. .+. ....
T Consensus 266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~----~~~-~~v~ 340 (463)
T KOG2816|consen 266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWM----MFA-AGVV 340 (463)
T ss_pred EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchh----hhH-HHHH
Confidence 22221 1222 22223333444555665555 6777789888888888888888888888766642 223 3333
Q ss_pred HHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 440 IFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
........+...+.++...+++.+|+++++...+..+.+.++|.+.
T Consensus 341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~ 386 (463)
T KOG2816|consen 341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALY 386 (463)
T ss_pred HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHH
Confidence 3445677788889999999999999999999999999999998887
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=138.96 Aligned_cols=140 Identities=20% Similarity=0.048 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheee
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
...+...+..++..++.++.|+++|| +|||++++++.++.++++++.+++++...+++.+++.|++.++..+...++++
T Consensus 596 ~~~~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999999999999 99999999999999999999999998888899999999988888999999999
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
|++|.+.|++++++..+...+|.+++|.+++.+. +...+|++.++..++.+ ++..++||+.
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~-ll~~~LPET~ 737 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGG-LLALKLPDTR 737 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhCCCCc
Confidence 9999999999999999999999999999988765 55667877777777655 5555679874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=134.95 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=125.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
+..+.|++.++..++..++.+++|++.|| +|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....
T Consensus 260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 338 (420)
T PRK09528 260 GTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFK 338 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999 99999999999999999999999999999999999999998888888888
Q ss_pred eeecccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 205 LATEPVGPSKRGAAGMS-TFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 205 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.|.+|++.|+...+. .+....+|.++++.+.+++. ||+..|++.+++.++..++.++.+++.|
T Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999998887655 56778899999999998887 9999999988887776656665655543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-11 Score=113.61 Aligned_cols=347 Identities=11% Similarity=-0.010 Sum_probs=205.1
Q ss_pred ceeec-ccccchhhhHHH-HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 009563 114 STVTQ-WGLFCEEKYKVG-LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 114 ~i~~~-~~~~~~s~~~~~-~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 191 (532)
.+.+. .|+ +..|+. -+.-+..-.+....++...+.|. .|.|++++++.+...+..++..+.++...+-+..++.
T Consensus 29 yL~~~~kn~---T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~y 104 (412)
T PF01770_consen 29 YLTGPDKNF---TEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFY 104 (412)
T ss_pred HHcCCccCC---CHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 33443 677 666654 46666777788899999999998 9999999999999999999999999999999999999
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
|++.+. ..+-++|+--..++++-.++.+....+.-+|..++.++|-.+. +.+...++......+.+ +..+++|
T Consensus 105 g~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~-~~~~fLP 182 (412)
T PF01770_consen 105 GLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL-LIALFLP 182 (412)
T ss_pred HHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHcC
Confidence 998776 6777889998899999999999999999999888888887776 55666665554444434 6667788
Q ss_pred cCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHH-
Q 009563 267 ESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIR- 345 (532)
Q Consensus 267 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 345 (532)
..++...-+++..+..+ . .+.+.+...+.++...+..+..........+........+++..+++..+.-
T Consensus 183 ~~~~S~~f~r~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WS 253 (412)
T PF01770_consen 183 MPKRSLFFHRKPPAEQD-------A--NESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWS 253 (412)
T ss_pred CCCcccceeccCccccc-------c--ccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 76654333322211110 0 0000000000000000000011111111111222334456677777765433
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc--C-cchH--HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHH--HHHHHHHHHHHH
Q 009563 346 LFLAVTINFLCSVVYYGISLNVVN--L-QTNL--YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTI--GTLWFSGFFCLL 418 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~--~~~~~~~~~~~~ 418 (532)
++..+....-....+|...++... . .... +..-....+.+.++.+..|++-.+..+-..+. ...++.+.++++
T Consensus 254 lWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~l 333 (412)
T PF01770_consen 254 LWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFL 333 (412)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334455555554433 1 1111 11122233444556677777744444433333 233333444444
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHH
Q 009563 419 GSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAI 479 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~ 479 (532)
+....+.+ +..+..+++........++...-++.....+.-|.++|+.+++..+-..
T Consensus 334 m~~t~~Iw----v~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 334 MSFTGNIW----VCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQT 390 (412)
T ss_pred HHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHH
Confidence 43333222 5666666666667777777666666666677778888888776654443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=128.45 Aligned_cols=143 Identities=12% Similarity=0.077 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc----hHHHHHHHHHHHHhhccccchh
Q 009563 126 KYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP----NYSTYVVLRMLTGFSTGGVGLC 201 (532)
Q Consensus 126 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~ 201 (532)
....+...++..++..++.++.|++.|| +|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+.
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999 9999999999999988877776632 3466788899999999988888
Q ss_pred hhheeecccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 202 AFVLATEPVGPSKRGAAGMSTF-YFFSTGIALLSGIAYIFQ---------TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 202 ~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~---------~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
...++.|++|+++|+++.++.+ ...++|.++||.+++.+. ||+..|++.+++.++..++.+++++|+.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999997 678899999999998875 3999999999998888888888888874
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=120.97 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=121.8
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGF 193 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 193 (532)
.+++++|+ +..+.+++.+...++..++.++.|+++|| +|||+.+..+.....+......+.++.+.+++.+++.++
T Consensus 242 ~l~~~~~~---~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 242 FIINELHL---PEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567888 88899998888888888999999999999 999998888777666655555567788888889999988
Q ss_pred hccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccccc
Q 009563 194 STGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPE 267 (532)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~e 267 (532)
+.+...+....+..|..|+ +|+++.++.+....+|..+++.+++.+. +|+..|++.+++.++.. +..++.||
T Consensus 318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 392 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL-FCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhhcC
Confidence 8777777777788898875 6999999999999999999999999876 89999998887777766 55555554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=119.45 Aligned_cols=142 Identities=19% Similarity=0.118 Sum_probs=122.2
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNY--STYVVLRML 190 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l 190 (532)
+...++++. +..+.+++.+.+.++..++.++.|++.|| +|||+.+.++.++..++.++..+.++. ..++...++
T Consensus 229 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T TIGR00890 229 KPYGQSLGL---SDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 344567788 88889999999999999999999999999 999999999999999888887776643 335566788
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHH
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
.|++.+...+..+.++.|.+|+++|++..++......+|..+++.+.+.+. ||++.|++.+++.++..
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 899888888888889999999999999999999999999999999998876 99999998887766543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=117.93 Aligned_cols=144 Identities=28% Similarity=0.334 Sum_probs=132.4
Q ss_pred Cceeec-ccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchH-HHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 009563 113 SSTVTQ-WGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKG-SLTVVCMMNAVFGCLTAFSPNYSTYVVLRML 190 (532)
Q Consensus 113 ~~i~~~-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 190 (532)
|.+.++ +|. +..+.++..+...++..++.++.|++.|| +|||+ .+..+.++..++.++..+.++.+.+++..++
T Consensus 199 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 274 (352)
T cd06174 199 PLYLQEVLGL---SAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274 (352)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444 488 89999999999999999999999999999 99999 9999999999999999999999999999999
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHH
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLI 260 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~ 260 (532)
.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+.+. +|++.+++.+++.++..++
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998886 9999999999988887633
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=121.32 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=122.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.++.|. +..+.+++.+.+.++..++.++.|++.|| +|||+.+..+.+...++.++..+.++.+.+.+..++.|
T Consensus 244 p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (406)
T PRK11551 244 PSLLVGQGL---SRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319 (406)
T ss_pred HHHHHhCCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555567788 88999999999999999999999999999 99999998887777777777777788888888889999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHH
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFL 258 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~ 258 (532)
++.+...+...+++.|.+|+++|++..++......+|..++|.+++.+. +|...++......++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAA 389 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence 9888888888999999999999999999999999999999999999875 56666666665555544
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=118.55 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheee
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLAT 207 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 207 (532)
..+.+.+++.++..++.+..|++.|| +|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+...+++.
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLV 337 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 45677778888999999999999999 99999999999988888888888888888999999999999999999888888
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccc
Q 009563 208 EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 208 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
+..|+++|++.+++......+|..+||.+++.+. ||++.|++.+++.++..++.++..
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999886 899999999988888775554443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.2e-11 Score=117.04 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=132.3
Q ss_pred Cceeec-ccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 009563 113 SSTVTQ-WGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 113 ~~i~~~-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 191 (532)
|.+.++ +|. +..+.|++.+.+.++..++.++.+++.|| .++++.+..+.++.+++.++..+.++.+.+.+..++.
T Consensus 247 p~~~~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (417)
T PRK10489 247 PALADEVWQM---GAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF 322 (417)
T ss_pred HHHHHhccCC---ChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 334444 888 88999999999999999999999999998 7888888888888888888888888888888899999
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccC
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~es 268 (532)
|++.+...+...+++.|..|++.|++..++......+|..+|+.+.+.+. |++..+++.++..++..++.+..+++.
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 99988877888889999999999999999999999999999999999887 778888888877777666777777765
Q ss_pred c
Q 009563 269 P 269 (532)
Q Consensus 269 p 269 (532)
+
T Consensus 403 ~ 403 (417)
T PRK10489 403 R 403 (417)
T ss_pred c
Confidence 3
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-09 Score=101.80 Aligned_cols=305 Identities=15% Similarity=0.085 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccCC
Q 009563 133 QALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGP 212 (532)
Q Consensus 133 ~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 212 (532)
.++-+....+++++.+.+.|+ .|.|..+.++........+.+-+ +|-+-++++-.+.|+|.+..+..--.|++|..++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~ 133 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTR 133 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCCh
Confidence 677788888999999999998 99999999999999888877766 4566688899999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhh-----------chH-HHH----------HHHHHHHHHHH--HHHhcccccC
Q 009563 213 SKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----------TWR-ALY----------IASSIPSILFL--LIILPFLPES 268 (532)
Q Consensus 213 ~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----------~wr-~~f----------~~~~~~~~~~~--~~~~~~~~es 268 (532)
+.+.+..++.-.....+.++|..+...+. +-+ ..+ .+.+++..+.. ++...++|..
T Consensus 134 ~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~ 213 (461)
T KOG3098|consen 134 ETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK 213 (461)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc
Confidence 99999999888888888888766654443 111 111 11111111100 0111122211
Q ss_pred chhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHH
Q 009563 269 PRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFL 348 (532)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (532)
.... +.+. . +. ......+...+++++++.......
T Consensus 214 -~~~~------~~~~------------------------------~-~~-------~~~~~l~~~~~l~~~~~ml~L~~~ 248 (461)
T KOG3098|consen 214 -DVVN------CKSS------------------------------S-ET-------SFSELLKLTFKLLKTPKMLLLFPF 248 (461)
T ss_pred -chhh------hhhh------------------------------c-cc-------cHHHHHHHHHHHhcCHhHHHHHHH
Confidence 0000 0000 0 00 000001123345566654433333
Q ss_pred HHHHHHHHHHHHHHhhh--ccc-cCc-ch---HHHHHHHHHHHHHHHHHHHHHHHhh---hCCchhHHHHHHHHHHHHHH
Q 009563 349 AVTINFLCSVVYYGISL--NVV-NLQ-TN---LYLNVLVNAVAEMPAFTITAVLLDK---LGRKPMTIGTLWFSGFFCLL 418 (532)
Q Consensus 349 ~~~~~~~~~~~~~~~~~--~~~-~~~-~~---~~~~~~~~~~~~~~~~~~~~~l~d~---~gr~~~~~~~~~~~~~~~~~ 418 (532)
.+..++..++-.-..+. ... ... .+ .....+..+++++++....+.+.+| +||++.+.++..+..+.+++
T Consensus 249 f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l 328 (461)
T KOG3098|consen 249 FFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL 328 (461)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Confidence 33333322221111111 111 111 11 2334455667788888888888766 68888888888877777766
Q ss_pred HHhhhccch--------------hHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 009563 419 GSLVKNNGI--------------WKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFV 484 (532)
Q Consensus 419 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~ 484 (532)
......... ...+..++.++.|++-.........++...+ ++.|..+.++.-.-..++..++-+.
T Consensus 329 i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 329 IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 655422111 1236777888899999898899999999999 5667888888877766666554444
Q ss_pred H
Q 009563 485 V 485 (532)
Q Consensus 485 ~ 485 (532)
.
T Consensus 408 ~ 408 (461)
T KOG3098|consen 408 S 408 (461)
T ss_pred h
Confidence 3
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.5e-11 Score=115.71 Aligned_cols=147 Identities=15% Similarity=0.130 Sum_probs=122.5
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGF 193 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 193 (532)
.+.+++|. +..+.+++.+...+...++.++.|++.|| +|||+.+.++.++..+..++..+.++.+.+++.+++.|+
T Consensus 225 ~~~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 300 (375)
T TIGR00899 225 LIIHELGL---PDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAI 300 (375)
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888 88899998888888888899999999999 999999988887776666666667788888889999999
Q ss_pred hccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 194 STGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
+.+...+....++.|..|+ +++++.++......+|..+++.+++.+. ||+..|++.++..++.. +..++++
T Consensus 301 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 374 (375)
T TIGR00899 301 FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVAL-FCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHHheec
Confidence 9888888888888998875 5679999999999999999999998876 89999999888877766 4444444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=100.65 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=108.1
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 194 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 194 (532)
+-+++|+ +..|++.+....+...++...+.|.++|| +|||+.-++.+++.+++++. -..++++.++++|++.|++
T Consensus 60 LY~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGia 134 (354)
T PF05631_consen 60 LYESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIA 134 (354)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHH
Confidence 3457888 99999999999999999999999999999 99999999999999999964 4568999999999999999
Q ss_pred ccccchhhhhee-ecc----cCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHhc
Q 009563 195 TGGVGLCAFVLA-TEP----VGPSKRGAAGMSTF-YFFSTGIALLSGIAYIFQ-----TWRALYIASSIPSILFLLIILP 263 (532)
Q Consensus 195 ~~~~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~-----~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
.+..+.+--+++ .|. +|++..+..++... ...++-.+++.+++.++. |-..+|....+..++..+++..
T Consensus 135 TSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 135 TSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHh
Confidence 999888776654 332 23333333333333 222233344444444443 3467888887777777655555
Q ss_pred ccccC
Q 009563 264 FLPES 268 (532)
Q Consensus 264 ~~~es 268 (532)
.-+|.
T Consensus 215 ~W~EN 219 (354)
T PF05631_consen 215 TWPEN 219 (354)
T ss_pred ccccc
Confidence 55554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=113.64 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=124.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|...+|+|. +..+.|++.++..++..++.++++++.|| +|+|+.+.++.++..+..++.+++++.+.+++.++++|
T Consensus 229 ~~~l~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g 304 (382)
T TIGR00902 229 AIYWQAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC 304 (382)
T ss_pred HHHHHHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 334467899 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHH
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTF-YFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
+..+...+....++.+. |+++|++..++++ ...++|..+++.++|.+. |+ ..|++.+++.++..
T Consensus 305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 99999999999999998 9999999999875 577899999999999987 64 45666666666544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-11 Score=116.82 Aligned_cols=137 Identities=21% Similarity=0.216 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeec
Q 009563 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATE 208 (532)
Q Consensus 129 ~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 208 (532)
.++..+.+.++..++.++.|++.|| +|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566678888999999999999999 999999999999888888888888888888899999999999888887788889
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 209 PVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 209 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
..|+++|+++.++......+|..+++.+.+.+. ||++.|++.++..++..++.+++.+
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999888887776 8999999988887776644444333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=119.21 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=118.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCC-CCchHHHHH--HHHHHHHHHHHHhhcchHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSR-LGRKGSLTV--VCMMNAVFGCLTAFSPNYSTYVVLRM 189 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r~ 189 (532)
|.+.+++|. +..+.+++.++..++..++.++.|+++||+ +++|+...+ +.++.+++.++..+.++++.+++.++
T Consensus 265 ~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~ 341 (455)
T TIGR00892 265 VPYAKDKGV---DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCI 341 (455)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 445567888 899999999999999999999999999971 233433333 34444555566677889999999999
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHH
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFL 258 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~ 258 (532)
+.|++.+...+...+++.|.+|++++++..++.+....+|.+++|.+++.+. +|++.|++.++..++..
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999775 59999999888766654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=114.42 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeec
Q 009563 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATE 208 (532)
Q Consensus 129 ~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 208 (532)
.++..+.+.++..+++++.|++.|| +|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 329 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK 329 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4556677888889999999999999 999999999999999998888888888888899999999999888888888899
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccc
Q 009563 209 PVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 209 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
.+|+++|++..++.+....+|..+++.+.+.+. ||+..|++.++..++..++.+++.
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998876 999999999888877665554443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.3e-11 Score=118.68 Aligned_cols=153 Identities=16% Similarity=0.070 Sum_probs=120.9
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh-----cc------hH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF-----SP------NY 181 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~-----~~------~~ 181 (532)
|.+.+++|. +..+.++......++..++.++.|+++|| +|||+.+.++.++.+++.++.++ .+ +.
T Consensus 308 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (481)
T TIGR00879 308 PTIFENAGV---STDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGN 383 (481)
T ss_pred HHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Confidence 566677888 77888899999999999999999999999 99999999998888887776652 11 23
Q ss_pred HHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHH
Q 009563 182 STYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 182 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
..+....++.+.......+....++.|.+|+++|+++.++......+|.++++.+.+.+. +|++.|++.++++++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 463 (481)
T TIGR00879 384 VAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGL 463 (481)
T ss_pred HHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHH
Confidence 333333333333333344666778899999999999999999999999999999888765 89999999998888877
Q ss_pred HHHhcccccCc
Q 009563 259 LIILPFLPESP 269 (532)
Q Consensus 259 ~~~~~~~~esp 269 (532)
++.+++.||++
T Consensus 464 i~~~~~~~~~~ 474 (481)
T TIGR00879 464 IFVYFFLPETK 474 (481)
T ss_pred HHHheecccCC
Confidence 67777778764
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-10 Score=111.43 Aligned_cols=147 Identities=16% Similarity=0.056 Sum_probs=119.1
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFG-CLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G 192 (532)
.+.+++|. +..+.+++.+...++..++.++.|++.|| +|||+... +..+..++. .+....++.+.+++..++.|
T Consensus 231 ~l~~~~g~---s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g 305 (390)
T PRK03545 231 FVQQVAGL---SENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWG 305 (390)
T ss_pred HHHHhcCC---CccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 34555788 88899999999999999999999999999 89887544 444444443 33455678888888999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
++.+...+.....+.+..| ++|++++++......+|..+|+.+++.+. |++..|++.+++.++..++.++..+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 9988777777788888766 68899999999999999999999999887 9999999999888887756555554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=116.60 Aligned_cols=140 Identities=17% Similarity=0.113 Sum_probs=109.8
Q ss_pred Ccee-ecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHH
Q 009563 113 SSTV-TQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS--PNYSTYVVLRM 189 (532)
Q Consensus 113 ~~i~-~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~ 189 (532)
|.+. +++|. +..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.++.... .+.+.+.+..+
T Consensus 299 p~~l~~~~g~---~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (496)
T PRK03893 299 PTYLKTDLGY---DPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF 374 (496)
T ss_pred HHHHHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 4444 58899 99999999999999999999999999999 999999988887776665544433 34444555555
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHH
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSIL 256 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~ 256 (532)
+.++......+..+.++.|.+|+++|++.+++......+|..++|.+++.+. ||+..+++.+....+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 5554444455667788899999999999999999999999999999999887 788877665544333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.7e-10 Score=108.98 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=120.9
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF-SPNYSTYVVLRMLT 191 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~ 191 (532)
|.+.+++|+ +..+.|...+.+.++..++.++.|++.|| +|||+.+..+..+..++.++... .++...+ .-++.
T Consensus 229 p~~l~~~g~---s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~ 302 (393)
T PRK09705 229 PAFYIEIGA---SAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVC 302 (393)
T ss_pred HHHHHHcCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHH
Confidence 444456788 89999999999999999999999999999 99999999988887777665543 3333222 23567
Q ss_pred HhhccccchhhhheeecccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 192 GFSTGGVGLCAFVLATEPVG-PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++. +|...|++.++..++..+....+.|
T Consensus 303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888877766667664 578999999999999999999999998887 5888888888877777766677788
Q ss_pred cCch
Q 009563 267 ESPR 270 (532)
Q Consensus 267 esp~ 270 (532)
|++.
T Consensus 383 ~~~~ 386 (393)
T PRK09705 383 ARFP 386 (393)
T ss_pred cccc
Confidence 8653
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-10 Score=109.87 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=106.4
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchH--HH------HHHHHHHHHHHHHHhhcchHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKG--SL------TVVCMMNAVFGCLTAFSPNYSTYV 185 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~--~l------~~~~~~~~~~~~~~~~~~~~~~l~ 185 (532)
.+.+++|. +..+.+++.+...++..++.++.|++.|| +|||+ .. ..+.++..+........++.+..+
T Consensus 241 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (399)
T TIGR00893 241 YLVQERGL---SILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAAL 316 (399)
T ss_pred HHHHHhcc---cHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 34456788 88999999999999999999999999999 99996 11 111111222222222233444444
Q ss_pred HHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---c-hHHHHHHHHHHHHHHHHHH
Q 009563 186 VLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---T-WRALYIASSIPSILFLLII 261 (532)
Q Consensus 186 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~-wr~~f~~~~~~~~~~~~~~ 261 (532)
...++.+++.+ ..+....++.|.+|+++|++..++......+|..+++.+.+.+. + |+..|++.++..++..+..
T Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 317 ALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 44455555444 78889999999999999999999999999999999999998886 6 9999998888777665443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-10 Score=113.73 Aligned_cols=153 Identities=14% Similarity=-0.026 Sum_probs=115.4
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc--hH--HHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP--NY--STYVVLR 188 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~--~~--~~l~~~r 188 (532)
|.+.+++|. +....++......++..++.++.|+++|| +|||+.++.+.++.+++.++.+... +. .....+.
T Consensus 295 p~i~~~~g~---~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 295 PEIFKTLGA---STDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHcCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 666677888 66666777777888899999999999999 9999999999999888887765431 11 1223334
Q ss_pred HHHHhhccc-cchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh------h---chHHHHHHHHHHHHHHH
Q 009563 189 MLTGFSTGG-VGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF------Q---TWRALYIASSIPSILFL 258 (532)
Q Consensus 189 ~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l------~---~wr~~f~~~~~~~~~~~ 258 (532)
++.+++.+. ..+....++.|.+|+++|++++++......+|.++++.+.+.+ . +|++.|++.+++.++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence 444444443 2366789999999999999999999999988888875544322 1 78888998888877777
Q ss_pred HHHhcccccCc
Q 009563 259 LIILPFLPESP 269 (532)
Q Consensus 259 ~~~~~~~~esp 269 (532)
++.+++.||++
T Consensus 451 ~~~~~~~~e~~ 461 (479)
T PRK10077 451 LFMWKFVPETK 461 (479)
T ss_pred HHHHhccccCC
Confidence 67777788874
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-09 Score=100.98 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=125.3
Q ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHhhhccccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 009563 335 DVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWF 411 (532)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~ 411 (532)
+++.++.....++...++.+.....++.+-.++++.+... +......-.+.++.-++.+++++|+|+-+++.+++..
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~ 445 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLAC 445 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhH
Confidence 5566665555555555566655555555555555544222 1223334466778888999999999999999999998
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHH-----HHHHHHHHHHH-
Q 009563 412 SGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAA-----QLGAILAPFVV- 485 (532)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-----~~g~~i~p~~~- 485 (532)
..+-++.+....+.+ ..+..-++-++..+..+....+|+....||+.++++.++..... .+|+++|..+.
T Consensus 446 ~~~Rf~~~S~L~n~W----~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 446 NVGRFLYYSYLQNPW----MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred HHHHHHHHHHhcCch----heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 888888888776654 56778889999999999999999999999999999999988753 35566666666
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHh
Q 009563 486 VLGGWLPFAVFAACGIIGGLFAF 508 (532)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
.++....|.++++.+++..++..
T Consensus 522 ~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 522 RFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred eehhHHHHHHHHHHHHHHHHHHH
Confidence 67778888888877777666543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=105.90 Aligned_cols=156 Identities=17% Similarity=0.070 Sum_probs=111.0
Q ss_pred HHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccc--hh
Q 009563 354 FLCSVVYYGISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNG--IW 428 (532)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 428 (532)
+........++.+..+.+.+ .........++.+++.++.|++.||+|||+.+..+..+..++.++..+..... ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (365)
T TIGR00900 13 IGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92 (365)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 33344444444444443333 33444455567778899999999999999999998888777776666554111 11
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHH
Q 009563 429 KIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIG 503 (532)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~ 503 (532)
+ ..++..++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+. ..++...|++.++..++.
T Consensus 93 ~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~ 171 (365)
T TIGR00900 93 W-QVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAIS 171 (365)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 4566677788888888899999999999999999999999999999999998876 345666777766666555
Q ss_pred HHHHhhc
Q 009563 504 GLFAFYL 510 (532)
Q Consensus 504 ~~~~~~l 510 (532)
.++.+.+
T Consensus 172 ~~~~~~~ 178 (365)
T TIGR00900 172 ALLIVSV 178 (365)
T ss_pred HHHHHhc
Confidence 5544433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=113.77 Aligned_cols=137 Identities=18% Similarity=0.115 Sum_probs=108.9
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH--HHHhh--cchHHHHHHHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFG--CLTAF--SPNYSTYVVLRML 190 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l 190 (532)
+++++|. +..+.+++.+...++..++.++.|+++|| +|||+.+..+..+..+.. ++..+ .++.+.+++..++
T Consensus 246 ~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (394)
T TIGR00883 246 LTQTLGL---SANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG 321 (394)
T ss_pred HHHhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3467888 88899999999999999999999999999 999998876555444433 22222 2567777788899
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhh---c-hHHHHHHHHHHHH
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMS-TFYFFSTGIALLSGIAYIFQ---T-WRALYIASSIPSI 255 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~---~-wr~~f~~~~~~~~ 255 (532)
.|++.+...+...+++.|.+|+++|+++.++ ...+..+|..++|.+++.+. | |++.++...+..+
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 322 LALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 9999988899999999999999999999987 45666788889999998876 5 8887776665443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-09 Score=104.59 Aligned_cols=164 Identities=10% Similarity=0.057 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-ccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHh
Q 009563 346 LFLAVTINFLCSVVYYGISLNV-VNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSL 421 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~ 421 (532)
....++...........++.+. ++.+.+. ........+..+++.+..|+++||+|||+.+..+.++..++.+.+.+
T Consensus 13 ~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~ 92 (395)
T PRK10054 13 LASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL 92 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Confidence 3334444444444443344433 3334333 33334445667788899999999999999998888888777776666
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHH
Q 009563 422 VKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----VLGGWLPFAVFA 497 (532)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~~~~~~~~~~ 497 (532)
.++.. ..+++..+.+.+.+...+....+..|..|++.|+++.|+.+...++|..++|.+. ..++...|.+.+
T Consensus 93 ~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~ 168 (395)
T PRK10054 93 VNNVT----LVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAA 168 (395)
T ss_pred HhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 54321 2333344455555566777888999999999999999999999999999998887 345677788777
Q ss_pred HHHHHHHHHH-hhccCC
Q 009563 498 ACGIIGGLFA-FYLPET 513 (532)
Q Consensus 498 ~~~~~~~~~~-~~l~~~ 513 (532)
++.++..++. +++|+.
T Consensus 169 ~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 169 ICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 7766665444 345544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=107.80 Aligned_cols=149 Identities=14% Similarity=0.098 Sum_probs=109.4
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh---c-chHHHHHHHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF---S-PNYSTYVVLRML 190 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l 190 (532)
+.+++|+ +......+.....+...++.++.|+++|| +|||+++..+.++..++.+.... . ++.+.+++..++
T Consensus 277 ~~~~~g~---s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (438)
T PRK09952 277 STQNLGL---PRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML 352 (438)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3456777 66655555666667778889999999999 99999998887766555433322 2 234455556677
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHhcc
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTF-YFFSTGIALLSGIAYIFQ-----TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~-----~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
.|++.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+.+. +|+..+.+.++..++.. +..+.
T Consensus 353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~-v~~~~ 431 (438)
T PRK09952 353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA-MTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-HHHHH
Confidence 788888888888899999999999998888854 445588889998888874 48888888777777766 44455
Q ss_pred cccC
Q 009563 265 LPES 268 (532)
Q Consensus 265 ~~es 268 (532)
++|+
T Consensus 432 ~~~~ 435 (438)
T PRK09952 432 MKDN 435 (438)
T ss_pred cccc
Confidence 5664
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-09 Score=106.14 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIY 453 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (532)
.........++..++.++.|++.||+|||+.+..+.++.+++.++..+..+.. ..++..++.+++.+..++...++
T Consensus 49 ~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~l~G~~~~~~~~~~~~~ 124 (405)
T TIGR00891 49 AASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI----TMFIARLVIGIGMGGEYGSSAAY 124 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHhhhhhhhHHHHHH
Confidence 33444555677788999999999999999999999888888877776654322 45666778888888888999999
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh--hhhHHHHHHHHHHHHHHHHhhccCCC
Q 009563 454 TTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG--GWLPFAVFAACGIIGGLFAFYLPETL 514 (532)
Q Consensus 454 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 514 (532)
+.|.+|+++|+.+.++.+....+|..++|.+. ..+ +...|++.++..++..+....+||++
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999998888776 223 45566555444444444445566643
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=106.52 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=131.0
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCch--HHHHHHHHHHHHHHHHHhh--------cchHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRK--GSLTVVCMMNAVFGCLTAF--------SPNYST 183 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~ 183 (532)
...+++|+ +..+...+.-+..+..++|++++|++.|| +|.| ++++++++++.+..+...+ .++.+.
T Consensus 307 ~a~~~lg~---s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~ 382 (477)
T PF11700_consen 307 YATEVLGM---STTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWE 382 (477)
T ss_pred HHHHhcCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHH
Confidence 34568999 99999999999999999999999999999 9999 8999998888777666665 678888
Q ss_pred HHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHH
Q 009563 184 YVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLL 259 (532)
Q Consensus 184 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~ 259 (532)
+.+.-++.|+..|..++...++.+|+.|+++.+..+|++....-....+||.+-+.+. +-|+.++...++.++.+
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl- 461 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGL- 461 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999988887 58888888887777766
Q ss_pred HHhccccc
Q 009563 260 IILPFLPE 267 (532)
Q Consensus 260 ~~~~~~~e 267 (532)
++++.++.
T Consensus 462 ~ll~~v~~ 469 (477)
T PF11700_consen 462 ILLFFVDV 469 (477)
T ss_pred HHHhhccc
Confidence 44455554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=107.50 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=110.8
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHH-HHHHHHHHHHHHHhh-----cchHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLT-VVCMMNAVFGCLTAF-----SPNYSTYVV 186 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~l~~ 186 (532)
|.+.+++|. +..+.+++.+...++..++.++.|+++|| +|||+.+. .+.+..+++.+...+ .++.+.+++
T Consensus 246 p~~~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~ 321 (402)
T TIGR00897 246 PMFVAELGF---STSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI 321 (402)
T ss_pred HHHHHHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 555677888 88899999999999999999999999999 99988764 333333443333321 346777778
Q ss_pred HHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHH
Q 009563 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLII 261 (532)
Q Consensus 187 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~ 261 (532)
..++.|++.+...+. ...+.|.. +++|+++.++.+....+|..++|.+++.+. ||+..+++.++..++..++.
T Consensus 322 ~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 322 IAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 889999888776543 45566765 468999999999999999999999988877 89999999888877766333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=106.69 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=115.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|...++.|. +..+.+++.+...++..+++++.|++.|| +|+|+++..+..+..++.+... + ...+....++.|
T Consensus 224 p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 224 PLYLNHQGM---SDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 444456688 88899999999999999999999999999 9999999888888777665443 2 234456778888
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHH
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
++.....|...+.+.|..|+++++...+......++|.+++|.+++.+. +|++.|++.+...++..
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 8877888989998999998888888888888889999999999999886 89999998887777655
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=105.91 Aligned_cols=137 Identities=16% Similarity=0.120 Sum_probs=116.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
+....|.+.++..+...++.++.|++.|| +|||+.+.++.++.+++.++...+++.+.+++.+++.|++.+........
T Consensus 252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 330 (396)
T TIGR00882 252 GTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFK 330 (396)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999 99999999999999998888888899999999999999987766666667
Q ss_pred eeecccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHh
Q 009563 205 LATEPVGPSKRGAAGMS-TFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIIL 262 (532)
Q Consensus 205 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~ 262 (532)
++.+..+++.++...+. .+....+|..+++.+++++. ||+..|.+.+++.++..++..
T Consensus 331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 77788888888776655 56788999999999999886 899999999888877664443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-09 Score=106.90 Aligned_cols=142 Identities=19% Similarity=0.117 Sum_probs=127.9
Q ss_pred Cce-eecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 009563 113 SST-VTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 113 ~~i-~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 191 (532)
|.+ .+++|. +...+|++.+.+.+|..+|+++.+++.+| +++++.+..+.++++++.+..+++++.+..++.-++.
T Consensus 242 Pl~a~~~l~~---~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 242 PLFARDVLGG---GASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred hHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 444 456888 89999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHH
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
|++.....+...+.+.+..|++.|||+++++.+....+..+|..+.|.+. |-+..+.+.++..++..
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999988888999999999999999999999999999999999999887 77888887776555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.2e-10 Score=110.67 Aligned_cols=141 Identities=20% Similarity=0.176 Sum_probs=107.0
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCL--TAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~ 191 (532)
.+++++|+ +..+.++..+...++..++.+++|+++|| +|||+.+.....+..++..+ ....++.+.+.+.+++.
T Consensus 284 yl~~~~g~---s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (467)
T PRK09556 284 YAFQELGF---SKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL 359 (467)
T ss_pred HHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45577899 99999999999999999999999999999 99998876655444443322 23345677777888888
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhh---------------chHHHHHHHHHHHH
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFST-GIALLSGIAYIFQ---------------TWRALYIASSIPSI 255 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~---------------~wr~~f~~~~~~~~ 255 (532)
|++.............|.+|++.||++.++.+....+ |..++|.+.+.+. +|+..|++..+..+
T Consensus 360 G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~ 439 (467)
T PRK09556 360 GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAI 439 (467)
T ss_pred HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHH
Confidence 8654433333345666999999999999999888886 7678777766654 49999988877766
Q ss_pred HHH
Q 009563 256 LFL 258 (532)
Q Consensus 256 ~~~ 258 (532)
+..
T Consensus 440 ~~~ 442 (467)
T PRK09556 440 GCI 442 (467)
T ss_pred HHH
Confidence 655
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-10 Score=108.32 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=104.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|. +..+.+++.+...++..++.++.|++.|| +|||+.+....+......++....++.+.+++..++.|
T Consensus 274 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 349 (398)
T TIGR00895 274 PKLMVELGF---SLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349 (398)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 556677888 88899999999999999999999999999 99995554444443333333333567778888899999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF 240 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 240 (532)
++.+...+...+++.|.+|+++|+++.++......+|..++|.+++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 350 FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999999999999999999999999998865
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-10 Score=99.40 Aligned_cols=151 Identities=16% Similarity=0.133 Sum_probs=117.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc-------chHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS-------PNYSTYV 185 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~ 185 (532)
|++++.+|+ |..|...+.+.-.+|..+| ++.|.+.|+ +|++.++.+|.+...+|..+...+ .++|.+.
T Consensus 26 ~~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~ 100 (250)
T PF06813_consen 26 PQLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC 100 (250)
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence 899999999 9999999999999999874 889999999 999999999999999998777643 3678888
Q ss_pred HHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhc
Q 009563 186 VLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILP 263 (532)
Q Consensus 186 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
+..++.|.+.+....++.....+.+| ++||++.++.-...+++..+-..+...+. +-...+.+.+....+..++..+
T Consensus 101 ~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~ 179 (250)
T PF06813_consen 101 LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMF 179 (250)
T ss_pred HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhh
Confidence 88888888887777777766678887 58999999999999999888666655544 3223333334333333335555
Q ss_pred ccccCc
Q 009563 264 FLPESP 269 (532)
Q Consensus 264 ~~~esp 269 (532)
+++..|
T Consensus 180 ~vr~~~ 185 (250)
T PF06813_consen 180 FVRPVP 185 (250)
T ss_pred heeccC
Confidence 555544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-09 Score=101.78 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIY 453 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (532)
.........++..++.++.|+++||+|||+.+..+.++.+++.++..+. .+ .+ ..++..++.+++.+...+....+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~l~g~~~~~~~~~~~~~ 109 (352)
T PF07690_consen 34 IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--SN-FW-LLLIARFLLGIGSGFFSPASNAL 109 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--CC-HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--hh-HH-HHhhhcccccccccccccccccc
Confidence 4455555667788999999999999999999999999888885555543 22 22 56777888899999999999999
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH-hhcc
Q 009563 454 TTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLP 511 (532)
Q Consensus 454 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~ 511 (532)
+.|.+|+++|+++.++.+....+|..++|.+. ..++...|++.+++.++..++. ++++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 110 IADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp HHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred ccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence 99999999999999999999999999999888 4456778888888888876643 3443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-10 Score=108.14 Aligned_cols=146 Identities=13% Similarity=0.122 Sum_probs=121.7
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 194 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 194 (532)
+++++|+ +..+.+++.+.+.++..++.++.|+++|| +|||+.+.....+..+...+....++.+.+.+..++.|++
T Consensus 232 l~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 307 (394)
T PRK03699 232 AQKKFGM---SLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFF 307 (394)
T ss_pred HHHHcCC---ChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3467899 99999999999999999999999999999 9999999988888777777777778887788888999998
Q ss_pred ccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 195 TGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 195 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
.+..++...++..|..| +++++..+.......+|..++|.+.+.+. ||+..+++.++..++.. +....++
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 380 (394)
T PRK03699 308 SSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF-VMCILLG 380 (394)
T ss_pred HHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH-HHHHHHH
Confidence 88888887777777765 45677788888888999999999998886 99999998888877766 3344444
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-09 Score=102.48 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
........++..++.+..|++.||+|||+.+..+.++..++.++..+..+.. ..++.-++.|++.+...+....++
T Consensus 46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~r~l~G~~~~~~~~~~~~~~ 121 (412)
T TIGR02332 46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPE----SLYLLRILVGIAEAGFLPGILLYL 121 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444455567778889999999999999999999999888888887754432 456667788888888888888999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHH-----------hhhhhHHHHHHHHHHHHHHHH-hhccCCC
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVVV-----------LGGWLPFAVFAACGIIGGLFA-FYLPETL 514 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 514 (532)
.|.+|+++|+++.++.+....+|..++|.+.. .++...|++.++..++..++. +++||+.
T Consensus 122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 122 TFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999998899888887761 267788888777766554443 5667654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.4e-09 Score=100.23 Aligned_cols=144 Identities=16% Similarity=0.119 Sum_probs=125.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
+...+|.+.++.-+.-++.-.+..++.+| +|.|+.++++..+..+=.++++++++.+.+.+.+.+.|+-.+........
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 205 LATEPVGPSKRGAAGMST-FYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 205 ~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
|+++.+|+|..++...+. +.+.++|..+.+.++|.+. |.+..|++.+.+.++..++..+.+++.+
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 999999988887777774 6888899999888888887 8899999999998888878888777654
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-08 Score=101.00 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=113.5
Q ss_pred CceeecccccchhhhHHHHHHH-HHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHH---hhc-chHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQA-LFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLT---AFS-PNYSTYVVL 187 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s-~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~ 187 (532)
|.+.+++|+ +..+.+++.. ...++..++.+++|+++|| +|+|+.+.++.++.+++.++. +.. ++.+.+.+.
T Consensus 247 ~~l~~~~G~---s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~ 322 (491)
T PRK11010 247 TFLIRGVGF---DAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA 322 (491)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 334567899 9999999974 6678999999999999999 999998877666555544322 333 455555556
Q ss_pred HHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcc
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
-++..+..|...+...++..+..+++.+++..++.+...++|..+++.+.+.+. ||+..|.+.++.+++.. +...+
T Consensus 323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l-~~~~~ 401 (491)
T PRK11010 323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGL-LLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-HHHHH
Confidence 666565556556667788889999999999999999999999888877777776 89999998888888766 44444
Q ss_pred ccc
Q 009563 265 LPE 267 (532)
Q Consensus 265 ~~e 267 (532)
+++
T Consensus 402 ~~~ 404 (491)
T PRK11010 402 CRQ 404 (491)
T ss_pred HHh
Confidence 444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-08 Score=99.56 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTT 455 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (532)
.......++..++.++.|.+.||+|||+.+..+..+.+++.+...+..+.. ..++.-++.+++.+...+...+++.
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~r~l~G~~~g~~~~~~~~~i~ 134 (394)
T PRK10213 59 QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFS----LLLIGRACLGLALGGFWAMSASLTM 134 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHH----HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333455667778899999999999999999999999988887776653322 4566677888888888899999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH-hhccCC
Q 009563 456 ELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLPET 513 (532)
Q Consensus 456 ~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 513 (532)
|.+|+++|+.+.++......+|..++|.+. ..++...|++.+++.++..+.. ..+||+
T Consensus 135 ~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 135 RLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999998889988888887 3467777777776655544433 345654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-09 Score=101.57 Aligned_cols=135 Identities=22% Similarity=0.215 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccc
Q 009563 377 NVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTE 456 (532)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (532)
......++..++.++.|+++||+|||+.+..+..+..++.+......+.. ..++..++.+++.+...+....++.|
T Consensus 43 ~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~g~~~~~~~~~~~~~i~~ 118 (392)
T PRK10473 43 AFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSS----LFLAGRFLQGIGAGCCYVVAFAILRD 118 (392)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34445566778889999999999999999998888888877766544322 34455667777777778888999999
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH-hhccCCCC
Q 009563 457 LFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLPETLN 515 (532)
Q Consensus 457 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 515 (532)
.+|+++|+++.++.+....++..++|.+. ..++...+++.+++.++..++. +.+||+++
T Consensus 119 ~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 119 TLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999998888888888776 2345666777776666655543 45666543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-09 Score=102.19 Aligned_cols=135 Identities=10% Similarity=0.020 Sum_probs=114.1
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhcc
Q 009563 117 TQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTG 196 (532)
Q Consensus 117 ~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 196 (532)
+|.|. +..+.|.+.+...++..+..++.|++.|| +|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+
T Consensus 233 ~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 308 (382)
T PRK11128 233 QAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT 308 (382)
T ss_pred HHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 56788 88899999999999999999999999999 999999999999999988888889999999999999999999
Q ss_pred ccchhhhheeecccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHH
Q 009563 197 GVGLCAFVLATEPVGPSKRGAAGMSTF-YFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILF 257 (532)
Q Consensus 197 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~ 257 (532)
...+....++.+. +++++++..+... ....+|..+|+.++|.+. |+ ..|+..+++.++.
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 8888888888886 5566788888775 556788889999999887 55 4555555555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.6e-09 Score=101.53 Aligned_cols=137 Identities=19% Similarity=0.248 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
........++..++.++.|++.||+|||+.+..+.++..++.+......+.. ...+..++.+++.+...+...+++
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~g~~~~~~~~~~~~~~ 118 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE----TLLVLRFVQAFGASAGSVISQALV 118 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH----HHHHHHHHHHcchhHHHHHHHHHH
Confidence 4444555677788999999999999999999999888888887776654322 455667778888888888999999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH-hhccCCCC
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLPETLN 515 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 515 (532)
.|.+|+++|+++.++.+....+|..++|.+. ..++...+++.+++.++..+.. +..||+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 119 RDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999988888777 3456677777776666655544 34565543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-09 Score=105.35 Aligned_cols=138 Identities=18% Similarity=0.132 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchh--HHHHHHHHHHHHHHHHhhhhhHhhh
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIW--KIVRMICGVMGIFGVAGTYNLLFIY 453 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (532)
.......++.+++.++.+++.||+|||+.+..+.++..++.++..+..+.... ....++.-++.|++.+..++....+
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 139 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAII 139 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44555667888999999999999999999999888888887776665432111 1256677788899999999999999
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHH----------------------------hhhhhHHHHHHHHHHHHHH
Q 009563 454 TTELFPTVVRNAALGCATQAAQLGAILAPFVVV----------------------------LGGWLPFAVFAACGIIGGL 505 (532)
Q Consensus 454 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 505 (532)
+.|.+|++.|+++.++.+....+|..+++.+.. .++...+.+.++..++..+
T Consensus 140 ~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 140 TSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888776651 1345555555555555555
Q ss_pred HHhhccCC
Q 009563 506 FAFYLPET 513 (532)
Q Consensus 506 ~~~~l~~~ 513 (532)
..+++||+
T Consensus 220 ~~~~lpES 227 (502)
T TIGR00887 220 FRLTIPET 227 (502)
T ss_pred HHHhCCCC
Confidence 55678886
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-09 Score=103.21 Aligned_cols=152 Identities=20% Similarity=0.144 Sum_probs=115.2
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc---hHH------H
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP---NYS------T 183 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~---~~~------~ 183 (532)
..+-++-|+ +..+.-+......+...++.+.+..+.|| +|||+.++.+..+..+..++..... +.. .
T Consensus 294 t~i~~~aG~---~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~ 369 (485)
T KOG0569|consen 294 TSIFKTAGF---TPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL 369 (485)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 456677788 88888999999999999999999999999 9999999999999998887776542 111 1
Q ss_pred HHHHHHHHHhhcc-ccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHH
Q 009563 184 YVVLRMLTGFSTG-GVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLL 259 (532)
Q Consensus 184 l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~ 259 (532)
.+++.++..++.+ +.-|...-+.+|.+|++.|..++++.....-+...+-...-..+. |= +.|++..+++++..+
T Consensus 370 ~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 370 CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLI 448 (485)
T ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHH
Confidence 2333333333222 236677889999999999999999888877777665444333333 33 778888888888888
Q ss_pred HHhcccccCc
Q 009563 260 IILPFLPESP 269 (532)
Q Consensus 260 ~~~~~~~esp 269 (532)
..++++|||.
T Consensus 449 ~~~~~lPETk 458 (485)
T KOG0569|consen 449 YLYRYLPETK 458 (485)
T ss_pred HHHHhCcccC
Confidence 9999999994
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=100.89 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHhhccccchhhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS-PNYSTYVVLRMLTGFSTGGVGLCAF 203 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~ 203 (532)
+..+.+++.++..++..++.+++++++|| +|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 333 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVW 333 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999 999999999998888887777665 4667778888999999999999889
Q ss_pred heeecccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 204 VLATEPVG-------PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 204 ~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
++++|..+ ++.+|...++.+....+|..+++.+.+.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888765 456799999999999999999999888775
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-09 Score=100.63 Aligned_cols=133 Identities=16% Similarity=0.082 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
........+...+..++.|++.||+|||+++..+..+..++.+.+....+ . ++.-++.+++.+...|...+++
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~------~-~~~r~l~G~~~a~~~pa~~a~i 113 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH------P-LLAYGLVGIGAAAYSPAKYGIL 113 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555677788999999999999999999998888777666544322 1 3344567888889999999999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHhhccCCC
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV----VLGGWLPFAVFAACGIIGGLFAFYLPETL 514 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 514 (532)
.|.+|+++|+++.|+.+....++..+||.+. ...+...+.+.+.+.+++.+....+||.+
T Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 114 TELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999887 22233333333333333444445666543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-09 Score=106.69 Aligned_cols=134 Identities=16% Similarity=0.068 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHhhccccchhhhheeecccC
Q 009563 134 ALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNY--STYVVLRMLTGFSTGGVGLCAFVLATEPVG 211 (532)
Q Consensus 134 s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 211 (532)
....+....+.++.+++.|| +|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+...+....+..|.+|
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34456677888999999999 999999999999999988888776643 455566677777777788888999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 212 PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 212 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
.+.|++++++......+|.+++|.+.+... ++..++++.++..++.. +..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAG-ILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHcCcCCC
Confidence 999999999999999999999999988322 66778888887777766 5556788874
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.5e-09 Score=102.90 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=99.3
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC--CchHHH-HHHHHHHHHHHHHHhh--cchHHHHHHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL--GRKGSL-TVVCMMNAVFGCLTAF--SPNYSTYVVLRM 189 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~l~~~r~ 189 (532)
+++++|. +..+.+++.+.+.++..++.++.|+++|| + |||+.. .....+..++.++..+ ..+.+..++..+
T Consensus 280 l~~~~g~---s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 355 (452)
T PRK11273 280 LKEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMI 355 (452)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 4455788 88889999999999999999999999999 8 555432 2223333333332222 234555555556
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHH-HHHHHHHhh---chHHHHHHHHHHHHHHHHHHh
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIAL-LSGIAYIFQ---TWRALYIASSIPSILFLLIIL 262 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~ 262 (532)
+.|.+..........+..|.+|+++||++.++.+....+|..+ +|.+.+.+. ||+..|++.++.+++.++...
T Consensus 356 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 356 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 6665433323333445679999999999999998888887654 788877776 899999988877776654443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-08 Score=97.91 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcc-ccCcchHHHHHH---HHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh
Q 009563 347 FLAVTINFLCSVVYYGISLNV-VNLQTNLYLNVL---VNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV 422 (532)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~ 422 (532)
...++........+...+.+. ++.+.+...... ...+...+..++.|+++||+|||+.+..+..+..++.+.+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 96 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444443444333 334444433333 3344555667889999999999999999999999888887665
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHH
Q 009563 423 KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----VLGGWLPFAVFAA 498 (532)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~~~~~~~~~~~ 498 (532)
++ .+ ..++..++.+++.+...+...+++.+.+|+++|+++.|+.+....+|..++|.+. ..++...|++.++
T Consensus 97 ~~--~~--~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~ 172 (400)
T PRK11646 97 HE--PW--LLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAV 172 (400)
T ss_pred cc--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 32 22 3455666777777777788889999999999999999999999999999988877 4456667777766
Q ss_pred HHHHHHHHH-hhccCC
Q 009563 499 CGIIGGLFA-FYLPET 513 (532)
Q Consensus 499 ~~~~~~~~~-~~l~~~ 513 (532)
..++..++. +++||.
T Consensus 173 ~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 173 LFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 665554443 445553
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-08 Score=101.35 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcccc
Q 009563 378 VLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTEL 457 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (532)
.....++..++.++.|++.||+|||+++..+.++..++.++..+..+.. ..++..++.|++.+.. .....++.|.
T Consensus 77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~----~l~~~r~l~G~~~~~~-~~~~~~i~~~ 151 (476)
T PLN00028 77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSAT----GFIAVRFFIGFSLATF-VSCQYWMSTM 151 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHhh-HHHHHHHHHh
Confidence 3445566778899999999999999999888888887777666654332 3344455666665543 3345578899
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHH----H----------hhhhhHHHHHHHHHHHHHHHHhhccC
Q 009563 458 FPTVVRNAALGCATQAAQLGAILAPFVV----V----------LGGWLPFAVFAACGIIGGLFAFYLPE 512 (532)
Q Consensus 458 ~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~l~~ 512 (532)
+|++.|+.+.|+.+....+|+.+++.+. . .++...|++.+++.++..++.+++++
T Consensus 152 ~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 152 FNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred cChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999877777766654433 1 25777888888877776666555543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-09 Score=102.28 Aligned_cols=148 Identities=23% Similarity=0.209 Sum_probs=102.8
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC--Cc-hHHHHH---HHHHHHHHHHHHhhcchHHHHHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL--GR-KGSLTV---VCMMNAVFGCLTAFSPNYSTYVVLR 188 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~--Gr-r~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r 188 (532)
+.+++|+ +..+.++..+.+.++..++.++.|+++|| + ++ |..... +.++..++..+.. ..+...+.+..
T Consensus 270 l~~~~g~---s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 344 (434)
T PRK11663 270 MSETLGV---DLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACF 344 (434)
T ss_pred HHhccCC---CHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHH
Confidence 3467888 89999999999999999999999999999 8 33 332222 2121211111122 23344444445
Q ss_pred HHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhccc
Q 009563 189 MLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 189 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
+..|++..........++.|.+|+++|++..++.+....+|..++|.+.+.+. ||+..|++.+++.++..+..+...
T Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 345 FTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555433222233456689999999999999999999999999999888876 899999999888877765554444
Q ss_pred cc
Q 009563 266 PE 267 (532)
Q Consensus 266 ~e 267 (532)
++
T Consensus 425 ~~ 426 (434)
T PRK11663 425 NA 426 (434)
T ss_pred hh
Confidence 43
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.4e-09 Score=103.08 Aligned_cols=125 Identities=18% Similarity=0.122 Sum_probs=95.0
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP--NYSTYVVLRML 190 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l 190 (532)
|...++.|. +..+.+.+.+...++..++.++.|++.|| +|||+.+..+.++..+..++....+ +...+.+..+.
T Consensus 255 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (426)
T PRK12307 255 PTYLAGEGF---DTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG 330 (426)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 444456677 88889999999999999999999999999 9999999988887776655544332 22222222223
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
.+++..+..+..+.++.|.+|+++|++++++......+|..++|.+.+++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 333333334556678899999999999999999999999999999998887
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-09 Score=118.15 Aligned_cols=140 Identities=19% Similarity=0.193 Sum_probs=120.3
Q ss_pred ceeecccccchhhh-HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 114 STVTQWGLFCEEKY-KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 114 ~i~~~~~~~~~s~~-~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
.+.+++|+ +.. +.+++.+...++.+++.+++|++.|| +++|+.+.++.++.+++.++..+..+.+.+++..++.|
T Consensus 258 ~~~~~~g~---s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (1146)
T PRK08633 258 YAKEVLGL---DNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFG 333 (1146)
T ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34566888 788 99999999999999999999999999 99999999999999888888888889999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHH
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILF 257 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~ 257 (532)
++.+...+...+++.+..|++.||+++++.+....+|.++++.+++.+. ++...|++.+.+.++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 9999999989999999999999999999999999999988887777664 4555666555544443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.8e-09 Score=104.06 Aligned_cols=134 Identities=11% Similarity=-0.008 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDK-LGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFI 452 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (532)
.........++..++.+++|+++|| +|||+++..+.++.+++.+++.+..+.. ..++...+.+++.+...+...+
T Consensus 50 ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~----~~~~~~~l~g~g~g~~~~~~~~ 125 (475)
T TIGR00924 50 AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD----LIFYGLGTIAVGSGLFKANPSS 125 (475)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHh----HHHHHHHHHHhccccccCCHHH
Confidence 3444455566778899999999999 8999999999999998888777654321 3445556677777778888889
Q ss_pred hccccccchh---hhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhhcc
Q 009563 453 YTTELFPTVV---RNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYLP 511 (532)
Q Consensus 453 ~~~~~~p~~~---r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 511 (532)
++.+.+|++. |+++.++.+...++|.+++|.+. ..++...|.+.++..+++.+..++.+
T Consensus 126 ~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 126 MVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999998654 88899999999999999998887 34677777777665555544444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.2e-09 Score=102.40 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccc
Q 009563 378 VLVNAVAEMPAFTITAVLLDKL-GRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTE 456 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (532)
.........++.+++|+++||+ |||+.+.++.++..++.+++........ ...+...+..++.+...+...+++.|
T Consensus 51 ~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~---~~~l~l~li~iG~G~~~~~~~alv~e 127 (493)
T PRK15462 51 FSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPS---FLYLSLAIIVCGYGLFKSNVSCLLGE 127 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHhcccccccHHHHHHH
Confidence 3444455667888999999998 9999999999998888766654321111 22333334445556666777889999
Q ss_pred cccch--hhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH
Q 009563 457 LFPTV--VRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 457 ~~p~~--~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
.+|++ .|.++.++.+...++|+.++|.+. ..|+...|.+.++..+++.+..
T Consensus 128 lfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 128 LYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 99875 689999999999999999999888 3467777777665555444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-08 Score=97.49 Aligned_cols=136 Identities=12% Similarity=0.033 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
........++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.. ..++..++.+++.+...+....++
T Consensus 41 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~----~l~~~r~l~G~~~~~~~~~~~~~~ 116 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYL----MLAIGRLVSGFPHGAFFGVGAIVL 116 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445556678889999999999999999999999999988888777665432 455666788888887778888888
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH-hhccCCC
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLPETL 514 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 514 (532)
.|.+|+++|+.+.++......+|..++|.+. ..++.+.|.+.+++.++..+.. .++||.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 117 SKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999888888888887765 3467778888777666554433 4567643
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=83.84 Aligned_cols=124 Identities=23% Similarity=0.334 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccch
Q 009563 382 AVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTV 461 (532)
Q Consensus 382 ~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 461 (532)
.++.+++.++.+++.||+|||+.+..+..+..++.+......+.. ...+..++.+++.+...+....++.|.+|++
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNIT----VLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 456778899999999999999999888888877777665543221 4556677788888888889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhh
Q 009563 462 VRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 462 ~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.|+++.++.+....+|..++|.+. ..++...+.+.+.+.+++.+...+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988877 233456667666666665555443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.6e-09 Score=103.69 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=103.1
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHhh
Q 009563 118 QWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS---PNYSTYVVLRMLTGFS 194 (532)
Q Consensus 118 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 194 (532)
.+|. +..+.+++.....++..++.++.|++.|| +|||+++..+.++.+++..+..+. ++.+.+.+..++.|++
T Consensus 291 ~~g~---~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 366 (471)
T PRK10504 291 GLGF---SPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMV 366 (471)
T ss_pred HcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4677 88899999999999999999999999999 999999999998888877666553 3444455667888888
Q ss_pred ccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 195 TGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 195 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
.+...+....++.+..|+++|+...++.+....+|..+|+.+++.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 367 NSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred HHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999988775
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-09 Score=97.20 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=132.5
Q ss_pred eecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhc
Q 009563 116 VTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFST 195 (532)
Q Consensus 116 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 195 (532)
+.++|+ +..+..++.-...+..++|++++|++.|| +|.|+++.++.++..+.++..-+...-..+.+.-.+.|+..
T Consensus 280 ~~~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~ 355 (438)
T COG2270 280 AADLGL---SSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSL 355 (438)
T ss_pred HHHcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Confidence 458999 99999999999999999999999999999 99999999999999999999888887777888889999999
Q ss_pred cccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccccC
Q 009563 196 GGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~es 268 (532)
|+.+..+.+|..+..|+++-++.+|++....-.+..+||.+-+.+. +-|..+....++.++.+ +.++.+|+.
T Consensus 356 G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl-~~L~~v~~~ 431 (438)
T COG2270 356 GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL-LLLLRVKVP 431 (438)
T ss_pred chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH-hhEEeecCC
Confidence 9999999999999999999999999999999999999999988887 77777777666666655 666666654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.6e-09 Score=96.39 Aligned_cols=133 Identities=17% Similarity=0.056 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIY 453 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (532)
.+.......+..-++-++.|.++||.+.|+.+.++.+++++..+++++..+.. ++.++.++.+++.+..+|.....
T Consensus 66 lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~----~~~~l~~lng~fQg~Gwpp~~~~ 141 (448)
T COG2271 66 LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLF----LFAVLWVLNGWFQGMGWPPCART 141 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhcCCCcHHHHH
Confidence 34444555566668999999999999999999999999999999999887432 67788889999999999999999
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHHHHhhc
Q 009563 454 TTELFPTVVRNAALGCATQAAQLGAILAPFVV-------VLGGWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 454 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l 510 (532)
+..-+|+++||+..++-|+..++|+.+.|.+. ..++...|++-+++.++..++.+++
T Consensus 142 i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 142 ITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred HHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877666 2256778888888888776666544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.1e-09 Score=103.00 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=102.0
Q ss_pred eecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHH---HHHHHHhh--cchHHHHHHHHHH
Q 009563 116 VTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNA---VFGCLTAF--SPNYSTYVVLRML 190 (532)
Q Consensus 116 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~---~~~~~~~~--~~~~~~l~~~r~l 190 (532)
++..|. +..+.++..+.+.++..++.++.|+++|| +|+++....+..+.. ++.+.... ..+.+...+..++
T Consensus 279 ~~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (438)
T TIGR00712 279 KEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIV 354 (438)
T ss_pred HHccCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 345688 88899999999999999999999999999 865432223332221 11121112 2234444444555
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHH-HHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTG-IALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
.|++.............|.+|+++|+++.++.+....+| .+++|.+.+.+. ||...|++..+..++..+..++.+|
T Consensus 355 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 355 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred HHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 565433322222345679999999999999998877776 568888888776 8999998888877777767777777
Q ss_pred cC
Q 009563 267 ES 268 (532)
Q Consensus 267 es 268 (532)
|.
T Consensus 435 ~~ 436 (438)
T TIGR00712 435 GE 436 (438)
T ss_pred hc
Confidence 75
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-08 Score=92.90 Aligned_cols=145 Identities=21% Similarity=0.186 Sum_probs=122.8
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF-SPNYSTYVVLRMLT 191 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~ 191 (532)
|.+++..|+ |...++++.-+|.++..+|+++.|+++|| +.|+.+.....+..+..+...+ .++.+..++.-++.
T Consensus 236 P~L~~v~g~---s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~w 310 (394)
T COG2814 236 PFLESVAGF---SVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTGASPALALALLFLW 310 (394)
T ss_pred HHHHHccCC---CHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 788888999 99999999999999999999999999997 8888888887777776666554 45667777778889
Q ss_pred HhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhc
Q 009563 192 GFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILP 263 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
|++.+.........+++ ..++.++.+.++....+++|..+|..+++.+. |+....++.+++.++..++.++
T Consensus 311 g~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 311 GFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 99888877777777777 55688999999999999999999999999987 8999999999888887744443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-05 Score=77.89 Aligned_cols=334 Identities=12% Similarity=0.022 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh------hc--c-----h--HHHHHHHHHHHHhh
Q 009563 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA------FS--P-----N--YSTYVVLRMLTGFS 194 (532)
Q Consensus 130 ~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~------~~--~-----~--~~~l~~~r~l~G~~ 194 (532)
+...-+-.+..++.++..|.+.|| ..|.+++..+.+..-++..+.+ +. + + ...+++.-.+.|.-
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i 119 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI 119 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence 333334455667788889999999 8999987776544333322221 11 1 1 11222222222221
Q ss_pred ccccc-hhhhheeecccC------CCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcc
Q 009563 195 TGGVG-LCAFVLATEPVG------PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 195 ~~~~~-~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
.-... ....++=.||.. ++.+.+..+...-.=-+..+++|++.+.+. +.+...++.++..++..++-+++
T Consensus 120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 112233344542 344555666666666677889999888886 66766666666666655444443
Q ss_pred ccc----CchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcCh
Q 009563 265 LPE----SPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSP 340 (532)
Q Consensus 265 ~~e----sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (532)
+.. .|. +..+++.++ .+...++++..+........+...+........++..++.+
T Consensus 200 l~~VY~~~P~-L~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~ 259 (432)
T PF06963_consen 200 LARVYNSVPA-LAVKKRSSE-------------------SESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQP 259 (432)
T ss_pred HHHHHHhChH-hcCCCCCcc-------------------ccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCH
Confidence 321 111 100000000 00000000000000001111111122223345677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH
Q 009563 341 LTRIRLFLAVTINFLCSVVYYGISLNVVNLQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCL 417 (532)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~ 417 (532)
.+...+-..+++....++......+. ...+.+. +..-...++.++.|+++..++.+|+|..+.-.++......+..
T Consensus 260 vflas~alalLY~TVLsf~~lmt~yl-~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~ 338 (432)
T PF06963_consen 260 VFLASFALALLYFTVLSFGGLMTAYL-KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA 338 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 66655554444444333222222222 1223332 3333455677888999999999999988877766664443333
Q ss_pred HHH---hhhccc---hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 418 LGS---LVKNNG---IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 418 ~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+.. +.+..+ .....++.+..+.-+|.-+.--...-++.|..|+++||+..|+-+...++...+.-.+.
T Consensus 339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222221 12223444445555555555556778899999999999999999999887766554444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=98.37 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=107.8
Q ss_pred ceeecccccchhhhHHHHHHHHHH-HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh------cchHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFF-FGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF------SPNYSTYVV 186 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~ 186 (532)
...+|.|+ +..++|++..... .+..++.++.|++.|| +|+|+.+..+.++.++..+.... .++...+..
T Consensus 233 ~~l~~~G~---s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (390)
T TIGR02718 233 LYLVDAGW---PLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS 308 (390)
T ss_pred HHHHhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence 34456799 9999999988876 4667789999999999 99999998877765333332221 233444455
Q ss_pred HHHHHHhhccccchhhhheeecccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHH
Q 009563 187 LRMLTGFSTGGVGLCAFVLATEPVGP-SKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 187 ~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
...+.+++.+...+...+.+.+..++ +++++.+++.+...++|..+++.+++.+. ||+..|++.+++.++..
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 56666777777777777777777766 88999999999999999999999999886 88899988877766654
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=98.20 Aligned_cols=139 Identities=13% Similarity=0.052 Sum_probs=109.5
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc-----chHHHHHHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS-----PNYSTYVVLRM 189 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~ 189 (532)
+.+++|+ ++.+.++......++..++.++.|+++|| +|+|+.+.++.++..++.++.++. ++.+.+++..+
T Consensus 242 ~~~~~g~---~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK15402 242 LISGEQL---SSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS 317 (406)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 3466888 88899998888888999999999999999 999999999988887777766543 35677788899
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHH
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
+.|++.+...+......... ++++||+..+..+....+|..+|+.+++.+. +|....+..++..++..
T Consensus 318 ~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 388 (406)
T PRK15402 318 LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWL 388 (406)
T ss_pred HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHH
Confidence 99999988777665554333 4589999999999999999999999999876 55554444444444443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=101.90 Aligned_cols=153 Identities=19% Similarity=0.205 Sum_probs=114.0
Q ss_pred HHHHHHhhhccccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHH
Q 009563 357 SVVYYGISLNVVNLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRM 433 (532)
Q Consensus 357 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (532)
.......+....+.+. +.........++..++.++.|++.||+|||+.+..+..+..++.++....++.. ..+
T Consensus 19 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~l~ 94 (485)
T TIGR00711 19 TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLE----LMI 94 (485)
T ss_pred HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHH----HHH
Confidence 3334444554444443 234445566678888999999999999999999999998888888777654332 456
Q ss_pred HHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH-
Q 009563 434 ICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA- 507 (532)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~- 507 (532)
+..++.+++.+...+...+++.|.+|++.|+++.++......+|..++|.+. ..++.+.|++.+.+.++..++.
T Consensus 95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 174 (485)
T TIGR00711 95 IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF 174 (485)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHH
Confidence 6777888888888899999999999999999999999999999998888876 3456677777666665554444
Q ss_pred hhccCC
Q 009563 508 FYLPET 513 (532)
Q Consensus 508 ~~l~~~ 513 (532)
+++|++
T Consensus 175 ~~~~~~ 180 (485)
T TIGR00711 175 FILPRD 180 (485)
T ss_pred HHcCCc
Confidence 445554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=101.37 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=90.7
Q ss_pred Cce-eecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHH-H---hhcchHHHHHHH
Q 009563 113 SST-VTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCL-T---AFSPNYSTYVVL 187 (532)
Q Consensus 113 ~~i-~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~-~---~~~~~~~~l~~~ 187 (532)
|.+ ++.+|+ +..+.++....+.++..++.+++|+++|| +|||+.+..+.++..+..+. . ...+++..+.+.
T Consensus 262 p~~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T PRK15075 262 PTFGKTVLHL---SAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAV 337 (434)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 443 344788 88888999999999999999999999999 99999888765544332211 1 123444445555
Q ss_pred HHHHHhhccccchhhhheeecccCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFY-FFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~ 241 (532)
.++.|++.+...+....++.|.+|+++|+...++... +..++..++|.+.+.+.
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~ 392 (434)
T PRK15075 338 ELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLI 392 (434)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666777776666667888999999999999998544 44445667888887765
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-08 Score=95.54 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccc
Q 009563 377 NVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTE 456 (532)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (532)
......++..++.++.|+++||+|||+++..+..+..++.++.....+.. ..++.-++.|++.+...+....++.|
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~----~l~~~r~l~Gi~~~~~~~~~~~~~~~ 131 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMT----QFLIARFIQGTSICFIATVGYVTVQE 131 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567778899999999999999999999888888877776654332 45556666777666555666788889
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH-hhccCCCC
Q 009563 457 LFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLPETLN 515 (532)
Q Consensus 457 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 515 (532)
.+|++.++++.++.+....++..++|.+. ..++...|++.+++.+++.+.. +.+||+++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 132 AFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999888888888777 3467788888888777766553 45777643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.5e-08 Score=98.54 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=110.8
Q ss_pred HHHHHHhhhccccCcc---hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHH
Q 009563 357 SVVYYGISLNVVNLQT---NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRM 433 (532)
Q Consensus 357 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (532)
+......+....+.+. +..+......++...+.+..|+++||+|||+.+..+..+..++.++..+.++.. ..+
T Consensus 23 tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~----~li 98 (495)
T PRK14995 23 TVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTAS----WLI 98 (495)
T ss_pred HHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHH----HHH
Confidence 3344444544444443 233444445566677888999999999999999999999998888877765433 455
Q ss_pred HHHHHHHHHHHhhhhhHhhhccccc-cchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH
Q 009563 434 ICGVMGIFGVAGTYNLLFIYTTELF-PTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
+.-++.+++.+...+.....+.+.+ |+++|+++.|+......+|..++|.+. ..++.+.|++...+.++..++.
T Consensus 99 ~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~ 178 (495)
T PRK14995 99 ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLT 178 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Confidence 6667888888888887777666665 778999999999999999999999887 3467778887766666555444
Q ss_pred -hhccCC
Q 009563 508 -FYLPET 513 (532)
Q Consensus 508 -~~l~~~ 513 (532)
.++|+.
T Consensus 179 ~~~l~~~ 185 (495)
T PRK14995 179 ARYVPRQ 185 (495)
T ss_pred HHhCCCC
Confidence 455654
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.3e-08 Score=96.09 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=100.0
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP--NYSTYVVLRMLTG 192 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G 192 (532)
+++.+|. ++...++......++..++.++++++.|| +|+|+++.++.++..++.++..+.+ +++.+++..++.|
T Consensus 255 ~~~~~g~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g 330 (448)
T PRK09848 255 VRYVLND---TGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIAS 330 (448)
T ss_pred EeeecCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 3445676 66555555555577788899999999999 9999999999999888887777653 6777778888999
Q ss_pred hhccccchhhhheeecccCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 193 FSTGGVGLCAFVLATEPVGPS-------KRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
+|.+...+...+++.|..+.+ ++|...++.+....+|..+++.+.+.+.
T Consensus 331 ~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 331 IGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888654 4588999999999999999988877653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-07 Score=91.99 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHHhhhhhHhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKN-NGIWKIVRMICGVMGIFGVAGTYNLLFI 452 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (532)
.........+...++.+..|++.||+|.|+++.++.++..+..+...+..+ ........++..++.|++ +..++....
T Consensus 72 ~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~ 150 (462)
T PRK15034 72 LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMG 150 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 333444455566677888899999999999999999988888887776411 111111566666777776 678888999
Q ss_pred hccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 009563 453 YTTELFPTVVRNAALGCATQAAQLGAILAPF 483 (532)
Q Consensus 453 ~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~ 483 (532)
.+++.+|+++||++.|+....+++|..+++.
T Consensus 151 ~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~ 181 (462)
T PRK15034 151 NISFFFPKAKQGSALGINGGLGNLGVSVMQL 181 (462)
T ss_pred HHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999997666666554433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.4e-08 Score=92.87 Aligned_cols=149 Identities=18% Similarity=0.175 Sum_probs=121.8
Q ss_pred eeccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc-chHHHHH----HHHH
Q 009563 116 VTQWG-LFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS-PNYSTYV----VLRM 189 (532)
Q Consensus 116 ~~~~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~----~~r~ 189 (532)
.+|.| . +....+.+.++..++-++.-.+.+++..| +|.|+++.++.+..++=..+.+.. ++.+... +...
T Consensus 234 l~~~gg~---~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~ 309 (400)
T PF03825_consen 234 LQELGGY---SGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQL 309 (400)
T ss_pred HHHcccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 34555 5 66677888888888888999999999999 999999999999999988888877 5544433 3456
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHHH
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFY-FFSTGIALLSGIAYIFQ---------TWRALYIASSIPSILFLL 259 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~---------~wr~~f~~~~~~~~~~~~ 259 (532)
++|+..+........|+.+..|++.|+++.+++.. ..++|..+|..++|++. .|...+.+.++..++..+
T Consensus 310 lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~ 389 (400)
T PF03825_consen 310 LHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILV 389 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999998776 56899999999999986 455667777777777776
Q ss_pred HHhcccccC
Q 009563 260 IILPFLPES 268 (532)
Q Consensus 260 ~~~~~~~es 268 (532)
+.+++++|+
T Consensus 390 ~f~~~fk~~ 398 (400)
T PF03825_consen 390 LFVILFKPK 398 (400)
T ss_pred HHHhhccCC
Confidence 666777664
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=93.54 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
........++..++.++.|+++||+|||+.+..+..+..++.+...+..+.. ..++..++.+++.+...+....++
T Consensus 44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~l~G~~~~~~~~~~~~~~ 119 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA----QLLVLRFVQAVGVCSAAVIWQALV 119 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344455667778999999999999999999988888887777766544322 344555666777666667777888
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhhccCC
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
.|.+|++.++...+..+....++..++|.+. ..++...|++.+++.++..+..+++++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 120 IDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999888888888888888888888776 3456677777777776666655555543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-07 Score=92.94 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=93.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHhhccccc
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF-----SPNYSTYVVLRMLTGFSTGGVG 199 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~ 199 (532)
+....+++.++..++..++.+++++++|| +|+|+.+.++.++..++.+...+ .++.+.+++.-++.|++.+...
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~ 342 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFW 342 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHH
Confidence 45567777787788999999999999999 99999999888877766655432 3456777778889999999999
Q ss_pred hhhhheeecccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 200 LCAFVLATEPVG-------PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 200 ~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
+...++++|..+ ++..|..++......-+|..+++.+.+.+.
T Consensus 343 ~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 343 VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999865 344566889999999999999988877764
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-08 Score=96.74 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
........++..++.++.|++.||+|||+.+..+..+..++.+.+....+.. ...+..++.+++.+...+...+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~g~~~~~~~~~~~~~~ 104 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTID----QLIYMRFLHGLAAAAASVVINALM 104 (377)
T ss_pred HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677788999999999999999999999988888888877654322 455666777888888888888999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH-hhccCC
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLPET 513 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 513 (532)
.|.+|+++|+++.++.+....+|..++|.+. ..++...|++.+++.++..++. +.+||+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 105 RDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999899999888776 3456677777777666655444 455654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=93.85 Aligned_cols=111 Identities=14% Similarity=0.004 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIY 453 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (532)
.........++..++.+..+++.||+|||+.+..+..+.+++.+++.........+ ..++..++.+++.+...+....+
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~-~~l~~~~l~G~g~g~~~~~~~~~ 118 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYT-LFLVGLFILTAGLGFLETAANPY 118 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHhhHHHHHhhhhHH
Confidence 34445566677889999999999999999999999999988887765443222222 55667788899999998988899
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 454 TTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 454 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+.+..|++.|++..++.+....+|..++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~ 150 (410)
T TIGR00885 119 ILVMGPESTATRRLNLAQSFNPFGSIIGMVVA 150 (410)
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-08 Score=98.36 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=95.5
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh--h--cchHHHHHHHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA--F--SPNYSTYVVLRML 190 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l 190 (532)
+.+++|. +..+.++..++..++..+++++.|+++|| +|||+.+.++.++.++..+... . .++....+..-.+
T Consensus 270 l~~~~g~---s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (432)
T PRK10406 270 LVNTAGM---HANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMC 345 (432)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4466788 88889998988888889999999999999 9999988777665444332221 1 2233322222222
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhh--c-hHHHHHHHHHHHHHHHHHHhcccc
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFST-GIALLSGIAYIFQ--T-WRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~--~-wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
.+++.+...+....++.|++|++.|+.+.++......+ .....|.+.+.+. | |...+++.++..++.. +..++++
T Consensus 346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~-~~~~~l~ 424 (432)
T PRK10406 346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAF-LVSLMLH 424 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHhh
Confidence 22333334445667889999999999999998765443 2334666666554 4 6566666666665555 3333444
Q ss_pred c
Q 009563 267 E 267 (532)
Q Consensus 267 e 267 (532)
+
T Consensus 425 ~ 425 (432)
T PRK10406 425 R 425 (432)
T ss_pred h
Confidence 3
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=93.67 Aligned_cols=136 Identities=14% Similarity=0.106 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
........++..++.++.|+++||+|||+.+..+..+..++.+......+.. ..++..++.+++.+...+....+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~~~~~~~~~~~ 121 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLT----VLIAASAIQGLGTGVGGVMARTLP 121 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH----HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444555677788999999999999999999998888888777766543322 455566677777776677777888
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHH-HhhccCCC
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLF-AFYLPETL 514 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 514 (532)
.|.++++.++.+.++.+....++..++|.+. ..++...|.+.++..++..+. .+++||++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 122 RDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 8999988999999998888888888888776 345667777776655544433 35567654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=97.71 Aligned_cols=129 Identities=21% Similarity=0.187 Sum_probs=95.2
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-hHH-HHHHH-HHHHHHHHHHhh--cchHHHHHHHHH
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGR-KGS-LTVVC-MMNAVFGCLTAF--SPNYSTYVVLRM 189 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Gr-r~~-l~~~~-~~~~~~~~~~~~--~~~~~~l~~~r~ 189 (532)
+.+++|. +..+.+++.+.+.++..++.++.|++.|| .++ |+. +.... ....++...... ..+...+++..+
T Consensus 243 ~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (379)
T TIGR00881 243 LTQEKGF---SKEKASWAFTLYELGGLVGTLLAGWLSDK-LFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLF 318 (379)
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHcchhHHHHHHHHHH-HcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 4456788 88999999999999999999999999997 543 332 22222 222222222222 345566667778
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHH
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALY 247 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f 247 (532)
+.|+......+....++.|..|+++|+++.++.+....+|..+++.+.+.+. ||++.|
T Consensus 319 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 319 ALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 8887666666666778899999999999999999999999999999988876 777643
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-08 Score=111.02 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=114.6
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc----------------
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS---------------- 178 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~---------------- 178 (532)
+.+.+|. +..+.|++.+.+.+|.+++.++.|++.|+ .++++.+..+.++.+++.+..++.
T Consensus 252 ~~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 327 (1140)
T PRK06814 252 AKETLGG---DENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV 327 (1140)
T ss_pred HHHHcCC---chHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhh
Confidence 4456788 89999999999999999999999999998 787777776666666655544443
Q ss_pred ----chHHHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHH
Q 009563 179 ----PNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIAS 250 (532)
Q Consensus 179 ----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~ 250 (532)
++.+.+++..++.|++.+...+...+++.+.+|+++||+++++.++...+|..+++++.+.+. ++...+++.
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~ 407 (1140)
T PRK06814 328 FLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFI 407 (1140)
T ss_pred hhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 677888889999999999999999999999999999999999999999999999999888775 556666655
Q ss_pred HHHHHHH
Q 009563 251 SIPSILF 257 (532)
Q Consensus 251 ~~~~~~~ 257 (532)
++..++.
T Consensus 408 ~~~~~~~ 414 (1140)
T PRK06814 408 ALANLIV 414 (1140)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-07 Score=85.36 Aligned_cols=134 Identities=14% Similarity=0.031 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeec
Q 009563 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATE 208 (532)
Q Consensus 129 ~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 208 (532)
.+.+.-+-.+...+.-+.+.++.+| +..+.=+....++..++.++.+++++.+.=+++-.+.+++.|........+..
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~- 138 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH- 138 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence 3344444455556666667777787 66555556667788889999999999999999999999999988887777643
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccccC
Q 009563 209 PVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 209 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~es 268 (532)
.+++ ...+-++.+.+.+.++|+..-..+. +-|..+++...+.++..+..++.+|.+
T Consensus 139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4443 3456777777777777776544443 447777777777766664445555543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.6e-09 Score=103.06 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=134.8
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCC--chHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLG--RKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRML 190 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 190 (532)
|...++.+. ++.+.+.+.++..+...++.+..|+++|+ .. ++.+..+++++.+++.+.+.++++++.++..-.+
T Consensus 322 ~~~~~~~g~---~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~ 397 (509)
T KOG2504|consen 322 PSYAKSLGL---SSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSIL 397 (509)
T ss_pred HHHHhhcCC---ChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 677779999 99999999999999999999999999998 66 5567788888888999999999999999999999
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
.|+..|........++.|+...++-..+.|+.....+++.++||++++.+. +|...|+..++..++.. +.++..|
T Consensus 398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~-~~~~~~~ 476 (509)
T KOG2504|consen 398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA-VLLLILR 476 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH-HHHHHhH
Confidence 999999999888889999999999999999999999999999999999776 69999999998888877 5555555
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-07 Score=91.40 Aligned_cols=136 Identities=18% Similarity=0.075 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIY 453 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (532)
.........++..++.+..|++.||+|||+++.........+.. ...... +.. ..++.-++.+++.+. .......
T Consensus 28 ~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~~-~~~--~l~~~R~l~G~g~~~-~~~~~~~ 102 (368)
T TIGR00903 28 LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDPF-NYE--WLLACQLLAALGQPF-LLNAFAP 102 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHhc-cHH--HHHHHHHHHHhHhHH-HHHHHHH
Confidence 34444555667788899999999999998876655444433322 222211 111 566667777777765 4455566
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH-hhccCCC
Q 009563 454 TTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA-FYLPETL 514 (532)
Q Consensus 454 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 514 (532)
..|.+|+++|+++.++.+....+|..++|.+. ..++...|++.+++.++..++. +++||..
T Consensus 103 ~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 103 AASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 68999999999999999999999988887776 4578888888777766655544 5667653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-06 Score=89.22 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=117.0
Q ss_pred eecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcch--------HHHHHHH
Q 009563 116 VTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPN--------YSTYVVL 187 (532)
Q Consensus 116 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~ 187 (532)
.+.+|+ +......+...+....-+..+++|+++|+++||++.+.++.++..++.++.+++.. ....+++
T Consensus 15 ~~~lg~---~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 15 LNFLGF---SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HHHcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 456777 78888888888888888999999999999899999999999999999988876421 2346677
Q ss_pred HHHHHhhccccchhhhheeecccCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhh----------chHHHHHHHHHHH
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSK---RGAAGMSTFYFFSTGIALLSGIAYIFQ----------TWRALYIASSIPS 254 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~l~----------~wr~~f~~~~~~~ 254 (532)
-.+..+|.|+.-+...+...|.+++++ |...+.++..+.++|..+++.+..++. +|...|.+.++..
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m 171 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM 171 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence 888899999999999999999887543 667788889999999999888877764 4888998888877
Q ss_pred HHHHHHH
Q 009563 255 ILFLLII 261 (532)
Q Consensus 255 ~~~~~~~ 261 (532)
++..++.
T Consensus 172 ~ia~lvf 178 (654)
T TIGR00926 172 ILALIVF 178 (654)
T ss_pred HHHHHHH
Confidence 7766443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-08 Score=98.53 Aligned_cols=125 Identities=13% Similarity=0.027 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccch-
Q 009563 384 AEMPAFTITAVLLDK-LGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTV- 461 (532)
Q Consensus 384 ~~~~~~~~~~~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~- 461 (532)
...+..+++|+++|| +|||+++..+.++..++.+.+.+..+... ..++...+.+++.+...|...+++.|.+|++
T Consensus 62 ~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~---ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~ 138 (489)
T PRK10207 62 LVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPD---LIFIALGTIAVGNGLFKANPASLLSKCYPPKD 138 (489)
T ss_pred HHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchh---HHHHHHHHHHhccccccCCHHHHHHHhcCCCc
Confidence 344556789999999 99999999999999999888876543222 3445566677888888888899999999877
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhhcc
Q 009563 462 -VRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYLP 511 (532)
Q Consensus 462 -~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 511 (532)
.|+.+.++.+...++|.+++|.+. ..|+.+.|++.++..+++.+...+.+
T Consensus 139 ~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 139 PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 457788888888888888887766 45677777775554444443333333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-08 Score=100.21 Aligned_cols=133 Identities=18% Similarity=0.133 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTT 455 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (532)
.......++..++.++.|++.||+|||+.+..+.++..++.++..+....... ..++.-++.|++.+..++....++.
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~l~~~r~~~G~~~~~~~~~~~~~~~ 157 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIA--LVVFCRVIQGLAQGSVSPATHKIIV 157 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHhcccchhhHHHHHH
Confidence 33444556778899999999999999999999888877777665443222211 4566677888899999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHH-----H-hhhhhHHHHHHHHHHHHHHHHhhc
Q 009563 456 ELFPTVVRNAALGCATQAAQLGAILAPFVV-----V-LGGWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 456 ~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~l 510 (532)
|.+|+++|+++.|+.+....+|..++|.+. . .++...|++.++..++..++.+.+
T Consensus 158 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 158 KWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999888877 2 267778888887776665555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=96.95 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=93.3
Q ss_pred CceeecccccchhhhHHHHHHHHHH-HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc-----------ch
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFF-FGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS-----------PN 180 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~-----------~~ 180 (532)
|...+++|. +..+.+.+.++.. ++..++.+++|++.|| +|||+.+..+.++.+++..+..+. ++
T Consensus 233 ~~~l~~~g~---~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (356)
T TIGR00901 233 TLFLLDMGF---SKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH 308 (356)
T ss_pred HHHHHHcCC---CHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 334445888 8999998887765 6788999999999999 999999999988888776655543 45
Q ss_pred HHHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHH
Q 009563 181 YSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFS 227 (532)
Q Consensus 181 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 227 (532)
.+.+....++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 67788889999999999999999999999999999999999877654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-07 Score=92.04 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=99.2
Q ss_pred ceeecccccchhhhHHHHHHHHH-HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHH---hhc-chHHHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALF-FFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLT---AFS-PNYSTYVVLR 188 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~-~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r 188 (532)
.+.+++|+ +..+++++.+.. .++..++.++.|++.|| +|||+.+..+.++..+..+.. ++. ++.+.+++.-
T Consensus 235 ~l~~~~G~---~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 235 FLIRGAGF---SAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHHhcCC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 34567888 899999988665 45689999999999999 999998887777666554433 343 4556555544
Q ss_pred ----HHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHH
Q 009563 189 ----MLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 189 ----~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~ 258 (532)
+..|++.+...+....++.+.+|.++++ +.+...++|..+++.+++.+. ||+..|.+.++++++..
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~ 383 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGL 383 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 4566667777788888888888766554 444445666665556676665 99999999888887765
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=86.10 Aligned_cols=347 Identities=15% Similarity=0.081 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccCC
Q 009563 133 QALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGP 212 (532)
Q Consensus 133 ~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 212 (532)
.-+..-.+.+.-++.=.+.|- .-.|++++.-.+......++.-+.++.+.+=+.-++.|...+ ...+-++|+-+..++
T Consensus 48 yPvwTYSYLv~LvpvFlLTD~-lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~ 125 (433)
T KOG3810|consen 48 YPVWTYSYLVGLVPVFLLTDY-LRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDP 125 (433)
T ss_pred ccchhHHHHHHHHHHHHHhhh-hhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCH
Confidence 334445566666777788997 788999988888888888888899999999999999998654 466788999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHHHHHHH
Q 009563 213 SKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRA 287 (532)
Q Consensus 213 ~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 287 (532)
+++.++.+....+.-.|...|..++-.+. +++..-.+.-....+ ..+..+++|..+|.+.-+.+.++.. .
T Consensus 126 ~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~i-a~~~A~fLP~v~rSl~f~~~~~~~~--v-- 200 (433)
T KOG3810|consen 126 EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTI-AVLLALFLPRVKRSLYFHRLEDKIS--V-- 200 (433)
T ss_pred HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHH-HHHHHhhCCCCchhhhhhcccccce--e--
Confidence 99999999999998888888888887776 333333333333233 3366677887765443333322110 0
Q ss_pred HHHHhCCCCCccccccchhhhhhhhhcCccchhh-hhhhhhccccchhhhhcChHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 009563 288 IAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKE-ELATKEAVTGSVIDVIKSPLTRI-RLFLAVTINFLCSVVYYGISL 365 (532)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 365 (532)
.+.++. +.+..+.+ .+.........+.+..+||.... .++..+.........+|...+
T Consensus 201 -----------------~~~e~~---~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~L 260 (433)
T KOG3810|consen 201 -----------------GDLEEM---NPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQIL 260 (433)
T ss_pred -----------------ccchhc---CccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHH
Confidence 000000 00000000 00111122234556667765443 333333333344555565555
Q ss_pred ccccCcchHHH-H---HHHHHHHHHHHHHHHHHHHhhhCCch--hHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 009563 366 NVVNLQTNLYL-N---VLVNAVAEMPAFTITAVLLDKLGRKP--MTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMG 439 (532)
Q Consensus 366 ~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~l~d~~gr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (532)
+-......... + =....+.+.++.+..|++--+..|.. ++.++.+..+...+.+... .+.| +..+..+++
T Consensus 261 W~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t--~~Iw--~~Ya~yvlf 336 (433)
T KOG3810|consen 261 WKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT--QHIW--VCYAGYVLF 336 (433)
T ss_pred HHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc--ccee--hhhhhHHHH
Confidence 54332211111 1 12223445567777777755554442 3333433333333333333 2222 567777777
Q ss_pred HHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH----Hh---------hhhhHHHHHHHHHHHHHHH
Q 009563 440 IFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----VL---------GGWLPFAVFAACGIIGGLF 506 (532)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~---------~~~~~~~~~~~~~~~~~~~ 506 (532)
........++...-+++....+.-|..+|+..++.-+-..+-..++ .. -+..-|++.+++.+++...
T Consensus 337 r~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~ 416 (433)
T KOG3810|consen 337 RVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGI 416 (433)
T ss_pred HhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHH
Confidence 7777777777777777777788889999998887766555544444 11 1445678888888877665
Q ss_pred Hhhc
Q 009563 507 AFYL 510 (532)
Q Consensus 507 ~~~l 510 (532)
....
T Consensus 417 ~~~~ 420 (433)
T KOG3810|consen 417 EYLM 420 (433)
T ss_pred HHHH
Confidence 4443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00011 Score=72.44 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc----c--------------------
Q 009563 125 EKYKVGLVQALFFFGCMIG-AGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS----P-------------------- 179 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~-~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~----~-------------------- 179 (532)
+...+.++-+...+..++. .++.+++++| ++|++++-+....+.+...++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~ 119 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGF 119 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhh
Confidence 3467889888888877776 8999999999 999999988887777777776654 1
Q ss_pred -------hHHHHHHHHHHHHhhccccch-hhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 180 -------NYSTYVVLRMLTGFSTGGVGL-CAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 180 -------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
+.|...+..+...+-...... .-..+++|.++.+|-.|..++...+.++|.++++.+..++.
T Consensus 120 ~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 120 MGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444444444444444 66788999999999999999999999999999998877754
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-07 Score=89.67 Aligned_cols=106 Identities=24% Similarity=0.290 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHhhhhhHhhh
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVK-NNGIWKIVRMICGVMGIFGVAGTYNLLFIY 453 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (532)
........++..++.++.|++.||+|||+.+..+.++..++.+...+.. +.. ..++..++.+++. ..++....+
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~g~~~-~~~~~~~~~ 114 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYS----VLLLLRLFIGIAG-GSFASCMPW 114 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHhc-hhhHhHHHH
Confidence 3444555677788999999999999999999999999988888877665 221 3445556666664 345567788
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 454 TTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 454 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+.|.+|+++|+.+.++......+|..+++.+.
T Consensus 115 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 115 ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999877777766665554
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=92.14 Aligned_cols=137 Identities=19% Similarity=0.232 Sum_probs=119.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHh
Q 009563 372 TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLF 451 (532)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (532)
...+.....-++.+++.+.+.|.+.||+|+|..++++..++....+++.+..+.. ..++.=.+.+++.+.......
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~----~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP----MLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH----HHHHHHHHhhhhHHHHHhhhH
Confidence 3455556667788999999999999999999999999999999999999876655 567778889999999999999
Q ss_pred hhccccccchh-hhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhhccC
Q 009563 452 IYTTELFPTVV-RNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYLPE 512 (532)
Q Consensus 452 ~~~~~~~p~~~-r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 512 (532)
+++++.+|.+. |++++|+.-.+..+|-.++|.+. ..|...+|+++++++++...+.+++-|
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 99999999766 69999999999999999999887 567899999999999998888776643
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=89.76 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=103.1
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccc
Q 009563 118 QWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGG 197 (532)
Q Consensus 118 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 197 (532)
.+|+ +..+.++..+.+..+..+|.+..+++.|| +|+|+.+.++.++..++.++....++... ...-++.|++.+.
T Consensus 172 ~~g~---s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~ 246 (310)
T TIGR01272 172 ALGL---PEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSI 246 (310)
T ss_pred cCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHH
Confidence 4688 89999999999999999999999999999 99999999998888888776666555433 3456689999999
Q ss_pred cchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHH
Q 009563 198 VGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIP 253 (532)
Q Consensus 198 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~ 253 (532)
.+|...+...+..|++ .+++.++. ....+|.++.|.+.|.+. |.+..|++..+.
T Consensus 247 i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 247 MFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999998888887653 45666665 456688899998877775 777777754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.3e-09 Score=98.40 Aligned_cols=138 Identities=22% Similarity=0.170 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIY 453 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (532)
.+.......+...+++++.|++.||++|++++.++..+-.++.+.-.+....+ .+.++=.+.|+|.+...|+..++
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fw----q~~l~R~~vGiGeAs~~~ia~s~ 145 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFW----QVLLCRGFVGIGEASYSPIAPSL 145 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccchhhhcccchhH
Confidence 34445556677889999999999999999999999999988888888773322 67777888999999999999999
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh-hhhHHHHHHHHHHHHHHHHh-hccCCCC
Q 009563 454 TTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG-GWLPFAVFAACGIIGGLFAF-YLPETLN 515 (532)
Q Consensus 454 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~-~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 515 (532)
++|.+|...|++++++.+....+|..+|-... ..+ +.+.|.+.+++.++..++.+ +++|..+
T Consensus 146 IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 146 IADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred hhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 99999999999999999999888766654433 222 78889999999888877764 4454433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-07 Score=93.60 Aligned_cols=116 Identities=13% Similarity=0.004 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchh--h
Q 009563 387 PAFTITAVLLDK-LGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVV--R 463 (532)
Q Consensus 387 ~~~~~~~~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r 463 (532)
...+++|++.|| +|||+.+..+.++..++..++.+..+... ..++...+.+++.+...+...++..|.+|++. |
T Consensus 72 ~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~---~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~ 148 (500)
T PRK09584 72 GLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAG---IVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRL 148 (500)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhh
Confidence 344689999999 59999999999988888777765432221 34455566777777777888889999997643 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHH
Q 009563 464 NAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGL 505 (532)
Q Consensus 464 ~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~ 505 (532)
..+.++.+...++|..++|.+. ..|+...|.+.++..+++.+
T Consensus 149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i 195 (500)
T PRK09584 149 DGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVV 195 (500)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 5678888888899999998887 35677777776655455443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.7e-08 Score=88.06 Aligned_cols=124 Identities=18% Similarity=0.137 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchH----HHHHHHHHHHHhhccccchhhhheeecccCC
Q 009563 137 FFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNY----STYVVLRMLTGFSTGGVGLCAFVLATEPVGP 212 (532)
Q Consensus 137 ~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~----~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 212 (532)
.+.-.-|.++.+++.|| +|||+.+..+.+++++..++.-.+.+- .+++.+|++. .+.+.+++.|-.|.+|.
T Consensus 391 slaefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPT 465 (528)
T ss_pred HHhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccch
Confidence 34556788999999999 999999999999999999887766432 2344556554 44566788999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHhcccc
Q 009563 213 SKRGAAGMSTFYFFSTGIALLSGIAYIFQ-TWRALYIASSIPSILFLLIILPFLP 266 (532)
Q Consensus 213 ~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-~wr~~f~~~~~~~~~~~~~~~~~~~ 266 (532)
+-|+...|.-+...-+|.++.|.++-... .-..+..+.+...++.. ++..++|
T Consensus 466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilag-IavcffP 519 (528)
T KOG0253|consen 466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAG-IAVCFFP 519 (528)
T ss_pred hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHH-HHheeee
Confidence 99999999999999999999999983332 33445556666666666 4445555
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.7e-08 Score=93.65 Aligned_cols=124 Identities=16% Similarity=0.153 Sum_probs=99.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-GRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLT 191 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 191 (532)
|.+.++.|. +..+.+++.+.+.++..++.++.|++.|| + +||+.+.++.++.+++.++..+.++..... .-++.
T Consensus 221 p~~~~~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 295 (355)
T TIGR00896 221 PAILISHGA---SAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL 295 (355)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence 445566788 88999999999999999999999999999 8 567777888888888877777665433332 45788
Q ss_pred HhhccccchhhhheeecccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 192 GFSTGGVGLCAFVLATEPVG-PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 192 G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
|++.+...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.
T Consensus 296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777665554 566788889888888889899999888875
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-07 Score=84.64 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhh
Q 009563 373 NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFI 452 (532)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (532)
+.+.......+.+.+.++.-|++.||+|.|+....+.++..+-++.+.+....+..+ .++++..+.|++ +..+.+...
T Consensus 50 q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~-~ll~~gll~G~~-GasFav~m~ 127 (417)
T COG2223 50 QKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTW-QLLVIGLLLGLA-GASFAVGMP 127 (417)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchH-HHHHHHHHHhcc-cceehcccc
Confidence 344444555566677888999999999999999999999999998888887766543 445555555543 577889999
Q ss_pred hccccccchhhhhHHHHHHHHHHHHHH----HHHHHH-Hhh---hhhHHHHHHHHHHHHHHHHh
Q 009563 453 YTTELFPTVVRNAALGCATQAAQLGAI----LAPFVV-VLG---GWLPFAVFAACGIIGGLFAF 508 (532)
Q Consensus 453 ~~~~~~p~~~r~~~~g~~~~~~~~g~~----i~p~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 508 (532)
.+++.+|+|++|.+.|+.. .+++|.. ++|.+. ..+ +.....+.....++..+..+
T Consensus 128 ~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~ 190 (417)
T COG2223 128 NASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAW 190 (417)
T ss_pred cccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 8888754 456666 444 55566666666666555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-06 Score=80.54 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHhhccccchhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP--NYSTYVVLRMLTGFSTGGVGLCA 202 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~ 202 (532)
++.+..+.......+..++.+++.++.+| +|+|+++.++.++..++.++.-+.+ +.+.+++..++.++|.+...+..
T Consensus 270 ~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~ 348 (467)
T COG2211 270 PELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLP 348 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccccc
Confidence 56667777888888888889999999999 9999999999999999999988875 78889999999999999999999
Q ss_pred hheeecccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 203 FVLATEPVG-------PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 203 ~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
.++++|..+ .+.-|...+......-+|.+++..+.++..
T Consensus 349 wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 349 WAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred HHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998765 233477778888888888888887666654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-06 Score=87.61 Aligned_cols=110 Identities=16% Similarity=-0.006 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHhhhhhHhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVK-NNGIWKIVRMICGVMGIFGVAGTYNLLFI 452 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (532)
.........++..++.++.|++.||+|||+++..+..+..++.++..... ..+.. ..++..++.+++.+...+....
T Consensus 63 ~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~--~ll~~r~l~G~g~g~~~~~~~~ 140 (438)
T PRK10133 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYT--LFLVGLFIIAAGLGCLETAANP 140 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHhhHHH
Confidence 34445666678889999999999999999999999999998887754221 22221 5667778889999999888888
Q ss_pred hccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 453 YTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 453 ~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
++.+..|++.|+...++.+....+|..++|.+.
T Consensus 141 ~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 141 FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777766778898888889988888775
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-06 Score=84.37 Aligned_cols=134 Identities=17% Similarity=0.069 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
+........+..+..+.+|++.||+|.|+++..+.+.-.+..+++.+..+.. .+.+.-++.|++.+..+ ....++
T Consensus 65 G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~----~L~i~R~llGvaEA~~~-A~~syI 139 (511)
T TIGR00806 65 NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW----HMQLMEVFYSVTMAARI-AYSSYI 139 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3444555567778999999999999999999999999999988888865432 57778889999999988 999999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH----Hhh---hhhHHHHHHHHHHHHHHHHhhccCC
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV----VLG---GWLPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
...+|+++|+++.|+.+....+|.++++.+. .++ +....++..+...++.++.+++|..
T Consensus 140 ~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 140 FSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999998888777 233 2233444555556666667888743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-08 Score=88.72 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
+.....+++.+++.+...|.++||+|||.++..+....++..++.+...+. . .++..=++.|+.. +...+..+++
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F-~---afv~aR~l~Gi~k-gnl~v~rAii 145 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF-A---AFVLARFLGGIFK-GNLSVIRAII 145 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHhhhhcc-CchHHHHHHH
Confidence 344556678889999999999999999999999999999988777766544 1 2233244455443 4557889999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+|++++++|+.+++.++....+|.++||.+.
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIG 176 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIG 176 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhh
Confidence 9999999999999999999999999999998
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-07 Score=90.98 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHhhccccchhhhh
Q 009563 127 YKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP--NYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 127 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
...+.+..+..++..++.+++++++|| +|+|+.+..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...+
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a 338 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWA 338 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccc
Confidence 567888889999999999999999999 9999999999999999999988886 9999999999999999999999999
Q ss_pred eeecccCC-------CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 205 LATEPVGP-------SKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 205 ~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
+++|..+. ++.|...+.......+|..+++.+.+.+.
T Consensus 339 ~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 339 MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 99998873 44588889999999999999888777654
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-07 Score=90.23 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhh
Q 009563 388 AFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNN---GIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRN 464 (532)
Q Consensus 388 ~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 464 (532)
+.+..|++.||+|+|+++.++.++..++.++.++..+. ...+ .+.+..++.+++.+..++.....+.+.+| ++||
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~-~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG 154 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV-RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG 154 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH
Confidence 45578999999999999999999999999888876321 1111 45556667777777777777788888887 6789
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHH
Q 009563 465 AALGCATQAAQLGAILAPFVV----VLGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 465 ~~~g~~~~~~~~g~~i~p~~~----~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
.+.|+......+|+++.+.+. ..+....|++.+++.++..++.
T Consensus 155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 155 AVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987644333 2245556666666666655544
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-06 Score=88.17 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHhhccccchhhhhe
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF--SPNYSTYVVLRMLTGFSTGGVGLCAFVL 205 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 205 (532)
..+.+.....++..++.+++++++|| +|+|+.+.++.++..++.+...+ .++.+.+++..++.|++.+...+...++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888999999999999 99999999888766654433322 3577778888899999999999999999
Q ss_pred eecccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 206 ATEPVG-------PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 206 i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
++|..+ ++..|...+.......+|..+++.+++.+.
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998875 233466788888889999999998888765
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=98.02 Aligned_cols=139 Identities=14% Similarity=0.198 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhc-------------------------------
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKN------------------------------- 424 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 424 (532)
.......++..++.++.+++.||.+||+.+.++.++.+++.+++.+.+.
T Consensus 72 ~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~ 151 (633)
T TIGR00805 72 LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQ 151 (633)
T ss_pred eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCC
Confidence 3344555777888899999999999999999999999999888876530
Q ss_pred --------------c--chhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH---
Q 009563 425 --------------N--GIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV--- 485 (532)
Q Consensus 425 --------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~--- 485 (532)
. ...+..+++.-++.|++.+..++...+++.|.+|++.|+...|+.+....+|..+|+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l 231 (633)
T TIGR00805 152 ALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFC 231 (633)
T ss_pred CccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 0 112224567788889999999999999999999999999999999999999988888776
Q ss_pred -H-h---------------------h-hhhHHHHHHHHHHHHHHHHhhccCCC
Q 009563 486 -V-L---------------------G-GWLPFAVFAACGIIGGLFAFYLPETL 514 (532)
Q Consensus 486 -~-~---------------------~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 514 (532)
. . | ++..|++.+++.++.++..+++|++.
T Consensus 232 ~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~l 284 (633)
T TIGR00805 232 LQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKAL 284 (633)
T ss_pred HhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 1 1 1 33456677776666665566666543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.2e-07 Score=91.10 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTT 455 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (532)
+......+...++.++.|+++|.+|||+.++.+.++..++.++....++.+ .++....+.+++.+... +....++
T Consensus 82 w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~----~~iag~~l~GvgaG~~~-~~~~~is 156 (599)
T PF06609_consen 82 WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN----TFIAGMVLYGVGAGVQE-LAALAIS 156 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH----HHHHHHHHHHHhhHHHH-HHHHHHH
Confidence 344455677778889999999999999999999999999999998877765 46778888888765544 4566689
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH
Q 009563 456 ELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 456 ~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
|..|.+.|..+.++..........++|.+. ..++.+.|++..+...++.+..
T Consensus 157 El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 157 ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 999999998877766654434344555555 2357778887777666665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-07 Score=87.23 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=100.9
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccC---CCCchHH-HHHHHHHHHHHHHHHhhcchH-------
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDS---RLGRKGS-LTVVCMMNAVFGCLTAFSPNY------- 181 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr---~~Grr~~-l~~~~~~~~~~~~~~~~~~~~------- 181 (532)
|+..++.|+ .....+.+--...+...+.+++.|..+|| ||||||. +..+.++..++.++.+++.++
T Consensus 56 tPyl~~lGv---phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~ 132 (498)
T KOG0637|consen 56 TPYLQSLGV---PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN 132 (498)
T ss_pred cHHHHHcCC---CcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC
Confidence 777888999 78888888888888889999999999997 6899765 555666777777777776543
Q ss_pred ----------HHHHHHHHHHHhhccccchhhhheeecccCCCchhH-HHHHHHHHHHHHHHHHHHHHHHhhchH
Q 009563 182 ----------STYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGA-AGMSTFYFFSTGIALLSGIAYIFQTWR 244 (532)
Q Consensus 182 ----------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~l~~~l~~wr 244 (532)
..++++--+.=++.-.....+-+++.|...++++.+ +.+++..+..+|..+|..++++. +|+
T Consensus 133 ~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~-~~~ 205 (498)
T KOG0637|consen 133 ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL-GLY 205 (498)
T ss_pred cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc-Cce
Confidence 234455555566666777888999999998777777 99999999999999999998766 443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-07 Score=86.99 Aligned_cols=140 Identities=27% Similarity=0.391 Sum_probs=114.2
Q ss_pred Cceeecccccchhh--hHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcch--HHHHHHHH
Q 009563 113 SSTVTQWGLFCEEK--YKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPN--YSTYVVLR 188 (532)
Q Consensus 113 ~~i~~~~~~~~~s~--~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r 188 (532)
+.+..+++. +. .+.++..+.+.++..++.++.|.++|| +|||+.+..+.....++.++.++..+ .+.+++.|
T Consensus 26 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (338)
T COG0477 26 PLLLSTLSL---SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILR 101 (338)
T ss_pred HHHHHHcCC---CchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344445544 34 478999999999999999999999999 89999888888776677777777766 89999999
Q ss_pred HHHHhhccccchhhhheeecccCC-CchhHHHHHHHH-HHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHH
Q 009563 189 MLTGFSTGGVGLCAFVLATEPVGP-SKRGAAGMSTFY-FFSTGIALLSGIAYIFQ-----TWRALYIASSIPSIL 256 (532)
Q Consensus 189 ~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~-----~wr~~f~~~~~~~~~ 256 (532)
+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+. +||+.|.+.......
T Consensus 102 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 102 LLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999999999999999987 678888888888 57788888887766654 799866666555544
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=76.81 Aligned_cols=336 Identities=17% Similarity=0.130 Sum_probs=172.0
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGF 193 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 193 (532)
.+-+.++. .+.++|.+.-..+-...+...+.|.++|+ .|||+.-+.-++...+++ +.-.++.|-.++++|.+-|+
T Consensus 62 yLYstYgF---gkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGi 136 (454)
T KOG4332|consen 62 YLYSTYGF---GKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGI 136 (454)
T ss_pred eeehhcCc---cCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhH
Confidence 45566777 67788887777777778888899999999 999997666555555544 34467889999999999999
Q ss_pred hccccchhhhhe-eecccCCCchhHHHHHHHHHH----HHHHHHHHHHHH----Hhh-----chHHHHHHHHHHHHHHHH
Q 009563 194 STGGVGLCAFVL-ATEPVGPSKRGAAGMSTFYFF----STGIALLSGIAY----IFQ-----TWRALYIASSIPSILFLL 259 (532)
Q Consensus 194 ~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~~~~----~~G~~~~~~l~~----~l~-----~wr~~f~~~~~~~~~~~~ 259 (532)
+.+..+.+--++ +.|-- ++|+.-.-+....+ .+|.-+-.+++| .+. |--.+|-..+.+..+...
T Consensus 137 aTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmA 214 (454)
T KOG4332|consen 137 ATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMA 214 (454)
T ss_pred HHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 998888776554 44443 23433322222222 223322233333 332 334455544443333332
Q ss_pred HHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcC
Q 009563 260 IILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKS 339 (532)
Q Consensus 260 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (532)
+..- .|-..-++..+.++.+.+. +...+.+..+
T Consensus 215 vil~------~W~ENygdps~~kdlltqf-----------------------------------------~gaa~aiaSD 247 (454)
T KOG4332|consen 215 VILS------SWSENYGDPSENKDLLTQF-----------------------------------------KGAARAIASD 247 (454)
T ss_pred HHHh------hhhhccCChhhhHHHHHHh-----------------------------------------hHhHHHHhcc
Confidence 2211 1211222222222222211 1122333444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCcc-----hHHHHHHHHHHHHHHHHHHHHHHHhhhCCc--hhHHHHHHHH
Q 009563 340 PLTRIRLFLAVTINFLCSVVYYGISLNVVNLQT-----NLYLNVLVNAVAEMPAFTITAVLLDKLGRK--PMTIGTLWFS 412 (532)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~--~~~~~~~~~~ 412 (532)
++ ..++...-..+-+..|...-+|.+.... ..+.......+..++|+-+..++..|-..| ..+.+.+++.
T Consensus 248 ~k---i~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs 324 (454)
T KOG4332|consen 248 EK---IALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVS 324 (454)
T ss_pred hH---HHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHH
Confidence 32 2222222222222222222333333321 122222333344555665655555543332 3444444444
Q ss_pred HHHHHHHHhh----hccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH---
Q 009563 413 GFFCLLGSLV----KNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV--- 485 (532)
Q Consensus 413 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~--- 485 (532)
.+.+.+..+. ++.... ...++...++-.+.+..+|...-+-.+..|++.|++.+-+...=-++...++-+..
T Consensus 325 ~a~l~Lpilt~~vsP~kes~-~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~ 403 (454)
T KOG4332|consen 325 IAALLLPILTSSVSPSKESP-SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVD 403 (454)
T ss_pred HHHHHHHHHHhccCCCcCCc-hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccc
Confidence 4444333332 222111 14456666677788899999999999999999998766554433233222222221
Q ss_pred --HhhhhhHHHHHHHHHHHHHHHH
Q 009563 486 --VLGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 486 --~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
..+....|-+......++.+..
T Consensus 404 ~~p~~tr~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 404 AFPTTTRNMFGICSAFLFVASILQ 427 (454)
T ss_pred cCccccchhhhhhHHHHHHHHHHH
Confidence 2223345555555555554443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=82.18 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=99.3
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH-HHHHhhcchHHHHHHHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVF-GCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~r~l~G 192 (532)
-.++.||+ |+...+.+.+..+.-.++.+++.|.++|| +|++...+.+..+..+. -....| +++.=..+..+.|
T Consensus 290 fF~~rfGl---S~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lG 363 (459)
T KOG4686|consen 290 FFQKRFGL---SAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLG 363 (459)
T ss_pred HHHHhhCC---ChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHh
Confidence 56789999 99999999998888889999999999999 99998776665544433 333333 4444557778888
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
+............++-..|+++.|++.+..+...++|..+.+++++.+.
T Consensus 364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~ 412 (459)
T KOG4686|consen 364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA 412 (459)
T ss_pred hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence 8777766666777888889999999999999999999999999999987
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-07 Score=94.19 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTT 455 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (532)
.......++.++|.++.|.++||+|||+++..+.++..++.+..++.++.. ..++.=++.|++.++.......+..
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~----~~~~~Rfl~G~~~~~~~~~~~~~~~ 197 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYW----MFLIFRFLSGFFGSGPLTVGFGLVA 197 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHhhccchhHHhHhhhe
Confidence 344555678889999999999999999999999999999998877776654 6778888999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHhhccCC
Q 009563 456 ELFPTVVRNAALGCATQAAQLGAILAPFVV---VLGGWLPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 456 ~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
|.++++.|+.+..+ ......++.++|.+. .-++.+.+++..+..++..++.++.+|.
T Consensus 198 E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es 257 (521)
T KOG0255|consen 198 EIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPES 257 (521)
T ss_pred eecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcC
Confidence 99999999999999 666777777776666 2246667777777666666654455454
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-06 Score=84.00 Aligned_cols=162 Identities=14% Similarity=0.011 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhhccccCcchHH---HHHHHHHHHHHHHHHHHHHHHh----hhCCchhHHHH-HHHHHHHHHHHHhhhc
Q 009563 353 NFLCSVVYYGISLNVVNLQTNLY---LNVLVNAVAEMPAFTITAVLLD----KLGRKPMTIGT-LWFSGFFCLLGSLVKN 424 (532)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~d----~~gr~~~~~~~-~~~~~~~~~~~~~~~~ 424 (532)
.+.+.......+.+....+.+.. .......+..++..++.|+++| |+|||+.++.+ .....++++++.+..+
T Consensus 17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 33444333333444444444333 3334455677788889999999 59999988764 5555555555555432
Q ss_pred cc------------hhH-HHHHHHHHHHHHHHHhhhhhHhhhccccccchhh--hhHHHHHHHHHHHHHHHHHHHHHh--
Q 009563 425 NG------------IWK-IVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVR--NAALGCATQAAQLGAILAPFVVVL-- 487 (532)
Q Consensus 425 ~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~g~~i~p~~~~~-- 487 (532)
.. .+. +..++...+..+......+...+++.|..|+++| +.+.++.+....+|+.+++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~ 176 (477)
T TIGR01301 97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG 176 (477)
T ss_pred hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 110 1233344455567777778889999999998865 578888888888998888876621
Q ss_pred ------------------hhhhHHHHHHHHHHHHHHHH-hhccCCC
Q 009563 488 ------------------GGWLPFAVFAACGIIGGLFA-FYLPETL 514 (532)
Q Consensus 488 ------------------~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 514 (532)
+....|++.+++.+++.+.. +..+|..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 23445666666666665554 4556654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.2e-06 Score=77.19 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=122.1
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA---FSPNYSTYVVLRM 189 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~ 189 (532)
|.=.+-||+ +..+..-+++.+..|..++-...|++..|+.++|+...+|+.+..++..+.. ...+.+.+..+-+
T Consensus 233 Pygg~Vfgm---sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~ 309 (403)
T PF03209_consen 233 PYGGEVFGM---SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVF 309 (403)
T ss_pred CchhHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 445677999 9999999999999999999999999988558899988899888887766644 4467889999999
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-------------chHHHHHHHHHHHHH
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-------------TWRALYIASSIPSIL 256 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-------------~wr~~f~~~~~~~~~ 256 (532)
+.|++.|.......+.+.|...+++.|..+|.+...+.++..++..+++.+. +|-.+|.+.++..++
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888764 466667777666555
Q ss_pred HH
Q 009563 257 FL 258 (532)
Q Consensus 257 ~~ 258 (532)
..
T Consensus 390 a~ 391 (403)
T PF03209_consen 390 AL 391 (403)
T ss_pred HH
Confidence 44
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-06 Score=86.42 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTT 455 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (532)
........+.+++.+.++++.||+|-|+++..+.++.+++.++..+......+ ..++.=++.|++.+..+|....+..
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~--~~~~~R~lqGl~~g~~~pa~~~i~~ 154 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFY--LLLVLRFLQGLGQGVLFPAIGSILA 154 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHHHHhHHHHhHHHhhhhceee
Confidence 44455667888999999999999999999999999999999999888766554 5677888999999999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHH-----H-hhhhhHHHHHHHHHHHHHHHHhhc
Q 009563 456 ELFPTVVRNAALGCATQAAQLGAILAPFVV-----V-LGGWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 456 ~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~l 510 (532)
+-.|+.+|++..++.....++|.+++-.+. . .|+...|++.+++.++..++.+++
T Consensus 155 ~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 155 KWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877764443 3 789999999999999887776544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=80.56 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=120.6
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+..|-|+ |..+.|++.+...+.....++....+++|+-.+|+..+...+++.++.+.+.+.+.-..++- -++.|
T Consensus 232 P~ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG 307 (395)
T COG2807 232 PAILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLG 307 (395)
T ss_pred HHHHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHh
Confidence 889999999 99999999999999999999999999996468888888889999999888888765433333 49999
Q ss_pred hhccccchhhhheeecccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcc
Q 009563 193 FSTGGVGLCAFVLATEPVGP-SKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
+|.|..++.+...+.+-.+. ++-++..++.+....+=..+||.+.|++. +|+...+......++..+..+..
T Consensus 308 ~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 308 LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999887754 44455556666666666677899988887 99999988888777766454443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.9e-05 Score=74.64 Aligned_cols=55 Identities=13% Similarity=-0.034 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 431 VRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
..++..++.++..|-..+....+..+..++++|..+..+......+|-.+|..+.
T Consensus 374 ~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 374 YFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788889999888899999999999999998888888887777777776654
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-06 Score=88.76 Aligned_cols=135 Identities=18% Similarity=0.214 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
........++..++.++.|+++|++|||+.+.++.++..++.++..+..+.. .+.++-++.|++.++...+...+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~----~l~~GR~l~G~g~G~~~~~~piy~ 167 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY----QLIVGRILTGLGVGGASVLAPVYI 167 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHhccchhhhhhcchhhH
Confidence 4555666788899999999999999999999999999999999999887443 677888999999999999999999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH-Hh-----hhhhHHHHHHHHHHHHHHHHhhccCC
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV-VL-----GGWLPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
+|..|++.||...+.......+|..++-.+. .. ++...+.+..+.+++..+..+++||+
T Consensus 168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 168 SEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred hhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999988888877774444 11 45556666666666665666677764
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.6e-07 Score=90.73 Aligned_cols=121 Identities=7% Similarity=-0.012 Sum_probs=106.7
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc----------chHHHHHH
Q 009563 117 TQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS----------PNYSTYVV 186 (532)
Q Consensus 117 ~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~ 186 (532)
+.+|. ++.+.|++.+...++..++....+++.+| ++.|+++.++.++.+++.+..... ++.+.++.
T Consensus 281 ~~lG~---s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~ 356 (468)
T TIGR00788 281 QCLPG---GPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLG 356 (468)
T ss_pred ccCCC---CcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeee
Confidence 46788 99999999999999999999999999998 999999999999999888664311 34445666
Q ss_pred HHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 187 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
.-++.+++.+........++.+..|+++++...++.....++|..+++.+++.+.
T Consensus 357 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~ 411 (468)
T TIGR00788 357 DSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLM 411 (468)
T ss_pred hhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999988876
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.2e-05 Score=72.90 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHH
Q 009563 434 ICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILA 481 (532)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~ 481 (532)
+..++..+.....+....++-+.+..|..-|+.+.+.|++.++|+---
T Consensus 410 ~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP 457 (544)
T PF13000_consen 410 IQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWP 457 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCch
Confidence 334455556666677788888999999999999999999999996543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-05 Score=78.65 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHhhccccchhhhh
Q 009563 127 YKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP--NYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 127 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
...+.+.+.+.++..++.+++++++|| +|+|+.+..+..+.++..++..+.+ +...+++.-++.|++.+...+...+
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788889999999999999999 9999987766555444444333322 2334455556778877777766677
Q ss_pred eeecccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 205 LATEPVG-------PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 205 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
++.|..+ ++..|...+.......+|..+++.+++.+.
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL 385 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML 385 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665 333355567777788888888888777654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.8e-06 Score=81.86 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhh
Q 009563 373 NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFI 452 (532)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (532)
..........++.+++.+.++.+.||++..+.+....+.-.+..++.....+.+ .+++.-++.|+..+..+|....
T Consensus 82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~----~~ialr~llGl~es~~wP~~~~ 157 (495)
T KOG2533|consen 82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFP----GLIALRFLLGLFESGGWPGVVA 157 (495)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHhcccchHHHH
Confidence 344555666688889999999999999965555555444444443433333332 5778889999999999999999
Q ss_pred hccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----------HhhhhhHHHHHHHHHHHHHHHH-hhccCC
Q 009563 453 YTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----------VLGGWLPFAVFAACGIIGGLFA-FYLPET 513 (532)
Q Consensus 453 ~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 513 (532)
++..-+.+++|+.-+|+.+....+|+++|+++. ..|+.+.|++-+++.++..++. +++|+.
T Consensus 158 ~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 158 ILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred HHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence 999999999999999999999999988888887 2348889999998888877665 566643
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-05 Score=73.85 Aligned_cols=110 Identities=18% Similarity=0.034 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
.........+..++.+..+++.+|+|+|+-++.+..+.++++.+++-......+. .+++..++.+.+.+......+.++
T Consensus 51 ~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~-~FL~~lFila~Gi~~LetaaNp~v 129 (422)
T COG0738 51 SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYG-FFLVALFILASGIGLLETAANPYV 129 (422)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHhhhHHHHhccchHH
Confidence 3334444456678888999999999999999999999999999987554433322 566777888888888889999999
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 455 TELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 455 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
..+.|++..+.-+.+...++.+|++++|.+.
T Consensus 130 ~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 130 TLLGKPESAAFRLNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred HHhCCchhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999998888889999999999999999988
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.3e-06 Score=80.32 Aligned_cols=122 Identities=18% Similarity=0.136 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchh--
Q 009563 387 PAFTITAVLLDK-LGRKPMTIGTLWFSGFFCLLGSLVK-NNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVV-- 462 (532)
Q Consensus 387 ~~~~~~~~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-- 462 (532)
+..+++|+++|| +|+|+.+..+.+++.++.+++.... .... .+++.+.+..++.++.=+...+++.|.+|+++
T Consensus 76 ~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~---gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPG---GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccc---HHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 467799999999 5999999999999999999998874 2222 56677777778999999999999999997533
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhhcc
Q 009563 463 RNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYLP 511 (532)
Q Consensus 463 r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 511 (532)
|-.++++..+..++|++++|.+. ..++...|...++-..++.+.....+
T Consensus 153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66778888888889999999888 45677777777777777766665554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00012 Score=74.03 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=111.5
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcch------------
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPN------------ 180 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~------------ 180 (532)
..+.++++. +...+.-..+.+.-......+..++++|-++||-+++.++.++..++.++..++..
T Consensus 62 ~ylt~~~~~---~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~ 138 (571)
T KOG1237|consen 62 TYLTLELHA---SGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK 138 (571)
T ss_pred HHHHHHhcc---chHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence 345567777 66777778888888888889999999998789999999999998888655443211
Q ss_pred -------------HHHHHHHHHHHHhhccccchhhhheeecccC---CCc---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 181 -------------YSTYVVLRMLTGFSTGGVGLCAFVLATEPVG---PSK---RGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 181 -------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
...++.+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+..+..
T Consensus 139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 2356677778888999999999999999887 222 235678889999999999888887774
Q ss_pred ---chHHHHHHHHHHHHHHH
Q 009563 242 ---TWRALYIASSIPSILFL 258 (532)
Q Consensus 242 ---~wr~~f~~~~~~~~~~~ 258 (532)
+|.+.|.+..+..++..
T Consensus 219 ~~~~w~lgf~i~~~~~~lai 238 (571)
T KOG1237|consen 219 DNVGWKLGFGIPTVLNALAI 238 (571)
T ss_pred hcccceeeccHHHHHHHHHH
Confidence 99998888777666544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=82.99 Aligned_cols=125 Identities=15% Similarity=0.087 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHhhccccchhhhheeecccC
Q 009563 140 CMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPN--------YSTYVVLRMLTGFSTGGVGLCAFVLATEPVG 211 (532)
Q Consensus 140 ~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 211 (532)
+..|..+...+.|+ .|||++.+.|.+++.+..+..+...| ...+.+..++.-+|- ......+-+|.+|
T Consensus 361 ~vPGyw~tv~~id~-iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP---n~ttfivpaE~FP 436 (538)
T KOG0252|consen 361 TVPGYWFTVYFIDI-IGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP---NATTFIVPAEIFP 436 (538)
T ss_pred cCCceeEEEEEeeh-hhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC---CceeEEeehhhch
Confidence 34477788889999 99999999999999999999888766 122333344444443 3345567789999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhh--------chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 212 PSKRGAAGMSTFYFFSTGIALLSGIAYIFQ--------TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 212 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--------~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
.+-|+...++.....-.|.+++...-..+. +.|+.+++.+...++.. +..+++||+.
T Consensus 437 arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi-~~T~l~pEtk 501 (538)
T KOG0252|consen 437 ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGI-LFTLLIPETK 501 (538)
T ss_pred HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhH-heeEEeeccc
Confidence 999999999999999999999887666554 78999999999888866 7778888985
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.6e-05 Score=68.51 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=69.2
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCchHHHHH-HHHHHHHHHHHHhh---------
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSD-----SRLGRKGSLTV-VCMMNAVFGCLTAF--------- 177 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d-----r~~Grr~~l~~-~~~~~~~~~~~~~~--------- 177 (532)
|.+.+.-|+ |-++.+...-++ ..+ .--++|.++.| | +||||.-++ +..+.+..+.+.+.
T Consensus 54 P~lL~ak~v---Syt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~-~GrrksWvvp~q~llG~~mllLs~~v~~~~g~n 127 (510)
T KOG3574|consen 54 PLLLQAKGV---SYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKR-FGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGN 127 (510)
T ss_pred HHHhcCCCc---chhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHh-hccccceeeehHHHHHHHHHHHhhCCCcccccC
Confidence 666666666 666666543322 122 23567888888 8 999986433 22222333322222
Q ss_pred --cchHHHHHHHHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 009563 178 --SPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGI 236 (532)
Q Consensus 178 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 236 (532)
.++...+....++.-+.++.-..++-.+.-.+..+++-|.+......+...|.+++..+
T Consensus 128 g~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 128 GGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 23333343445566666666666666666666777888888777777777777766544
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.4e-06 Score=60.51 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=64.6
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYV 185 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 185 (532)
|.+++|.++ |..+.|++.+..++||.+|++...++.++ ..+++.+..+.+...+..+.+++.++.+.+.
T Consensus 16 P~M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 16 PLMQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 999999999 99999999999999999999999999998 7889999999999999999999998876543
|
Note that many members are hypothetical proteins. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-08 Score=99.98 Aligned_cols=137 Identities=22% Similarity=0.225 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTT 455 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (532)
.......++.++|.++.|++.||+|||+.+..+..+..++.++..+.+.....+ .+.+.-++.|++.++..+....++.
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~R~~~G~~~g~~~~~~~~~~~ 128 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFW-MLLIGRFLIGFGIGGAYVVSPIYIS 128 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 344555678889999999999999999999999999999998888877331111 5667778899999999999999999
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHH-----hh---hhhHHHHHHHHHHHHHHHHhhccCC
Q 009563 456 ELFPTVVRNAALGCATQAAQLGAILAPFVVV-----LG---GWLPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 456 ~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
|..|++.|+...++.+....+|..++..+.. .+ +...+.+.++..++..+...++||+
T Consensus 129 E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 129 EIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998888888777766551 11 3334444455554444445666764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.1e-05 Score=69.25 Aligned_cols=104 Identities=12% Similarity=-0.000 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccc---hhHHHHHHHHHHHHHHHHhhhhhHhhhccc
Q 009563 380 VNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNG---IWKIVRMICGVMGIFGVAGTYNLLFIYTTE 456 (532)
Q Consensus 380 ~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (532)
...++..+ .++.|.+.|++|++.++.++.+...++...++...... ...+...+...+.+.+.............+
T Consensus 45 ~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~ 123 (250)
T PF06813_consen 45 AGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVR 123 (250)
T ss_pred HHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHH
Confidence 33455544 47889999999999999999999999988887764332 111133334444444444444555666678
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 457 LFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 457 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.|| ++||++.|+.-....+++.+...+.
T Consensus 124 NFP-~~RG~vvgilk~~~GLSaai~t~i~ 151 (250)
T PF06813_consen 124 NFP-RSRGTVVGILKGFFGLSAAIFTQIY 151 (250)
T ss_pred hCc-cccCceehhhhHHHHhHHHHHHHHH
Confidence 897 5799999999999999888877766
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-05 Score=64.25 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccC
Q 009563 132 VQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVG 211 (532)
Q Consensus 132 ~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 211 (532)
-.++.+....+++++.+.+.++ +|.|+.+++|.+...+-.... +-++.+.++.+-++.|++.+..++..-.++.+..+
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 3455666677888888999998 999999999999988655443 45778899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009563 212 PSKRGAAGMSTFYFFSTGIALLSGIAYIF 240 (532)
Q Consensus 212 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 240 (532)
+++|++..++.-.....+.++|.++...+
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888877777765443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.5e-06 Score=82.06 Aligned_cols=135 Identities=18% Similarity=0.078 Sum_probs=116.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
.+...|.....-..|-++.-++.+++..| +|+-+++.+++.+..+=.+..+..+|.|+.+...+++|+..+..+..+.+
T Consensus 404 ~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~s 482 (618)
T KOG3762|consen 404 IKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIIS 482 (618)
T ss_pred cceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHH
Confidence 44455555566666777888899999999 99999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCchhHHHHHHHH-HHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHH
Q 009563 205 LATEPVGPSKRGAAGMSTFY-FFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLI 260 (532)
Q Consensus 205 ~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~ 260 (532)
|++...||+.|..+.++.+. ..++|-.+|.++|+.+. +=|..|++.++.+++.+++
T Consensus 483 Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 483 YASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754 55788888889988887 7788898888888776633
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.7e-05 Score=73.06 Aligned_cols=139 Identities=21% Similarity=0.196 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHHhhhhhHh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGR-KPMTIGTLWFSGFFCLLGSLVKNNGI-WKIVRMICGVMGIFGVAGTYNLLF 451 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 451 (532)
.+.......++..+++++.++...|.+. |+.++.+.+++.++.++......... +.++++++=++.|++. +.....-
T Consensus 73 fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a~lR 151 (488)
T KOG2325|consen 73 FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFAVLR 151 (488)
T ss_pred hhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHHHHH
Confidence 3455566778888999999999999875 78888999999999988854433332 4335666666777664 4456778
Q ss_pred hhccccccchhhhhHHHHHHHHHHHHHHHHHHHH----Hhh--------------hhhHHHHHHHHHHHHHHHH-hhccC
Q 009563 452 IYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----VLG--------------GWLPFAVFAACGIIGGLFA-FYLPE 512 (532)
Q Consensus 452 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~--------------~~~~~~~~~~~~~~~~~~~-~~l~~ 512 (532)
.|+++..-.++|.++++..+....+|.++||.+. .++ +..+-++.+++.++..++. ++++|
T Consensus 152 ~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 152 AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 8888877778889998888887778888888776 111 4456667777777666655 44554
Q ss_pred C
Q 009563 513 T 513 (532)
Q Consensus 513 ~ 513 (532)
.
T Consensus 232 ~ 232 (488)
T KOG2325|consen 232 V 232 (488)
T ss_pred c
Confidence 3
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0082 Score=59.68 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=97.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhh
Q 009563 48 EFGPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKY 127 (532)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~ 127 (532)
|..+..+..++.+.+..++..+.....=.+ . | .-+.+..| +.
T Consensus 17 pi~~~E~~k~~~l~~m~f~i~f~y~~lR~~--------K-------D------------------~lvvt~~g-----ae 58 (491)
T PF03219_consen 17 PIHRSELKKFLPLALMFFFILFNYTILRDL--------K-------D------------------TLVVTAQG-----AE 58 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c-------C------------------eEEEecCC-----hh
Confidence 455677777777777777766665444333 1 0 22222222 34
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc---------c------------------
Q 009563 128 KVGLVQALFFF-GCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS---------P------------------ 179 (532)
Q Consensus 128 ~~~~~~s~~~l-~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~---------~------------------ 179 (532)
.+..+-....+ +..+...+..+++++ ++|.+++-+....+.....++++. +
T Consensus 59 ~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~ 137 (491)
T PF03219_consen 59 VIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF 137 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence 55555554444 345567788999999 999998887777666666655542 1
Q ss_pred ----hHHHHHHHHHHHHhhccccch-hhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 180 ----NYSTYVVLRMLTGFSTGGVGL-CAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 180 ----~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
+.|.+.+..++.-+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+...+.
T Consensus 138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~ 204 (491)
T PF03219_consen 138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFS 204 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222222222 34678899999999999999999999999999887766654
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00045 Score=68.15 Aligned_cols=123 Identities=15% Similarity=0.027 Sum_probs=109.9
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHH-hhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFG-HLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g-~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
.+...|++ ++.+.+...+...+...+++++.. .+... +|-|+++..|+..-.+...+.+++++.|+++....+.+
T Consensus 267 yl~~~f~w---~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~ 342 (463)
T KOG2816|consen 267 YLKAKFGW---NKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVA 342 (463)
T ss_pred EEeeecCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Confidence 56778899 999999988888888888888888 66666 89999999999999999999999999999999999888
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
+ .+...+...++++.+..++++|++.++.+....+...+++.+-+.+.
T Consensus 343 ~-~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 343 L-AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred h-hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 8 56788999999999999999999999999999999999888766653
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.033 Score=54.14 Aligned_cols=128 Identities=12% Similarity=0.023 Sum_probs=88.5
Q ss_pred ceeecccccchhhhHHHHHHHHHHH-HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc---------ch---
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFF-GCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS---------PN--- 180 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~---------~~--- 180 (532)
.+++.+.+....+..++++-+..-+ +..+..++.+++.++ +.|.+++-+-+..+....+++++. ++
T Consensus 48 ~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~ 126 (509)
T COG3202 48 SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEF 126 (509)
T ss_pred HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHH
Confidence 4445555433356677888887777 677889999999999 999999988888888887777753 11
Q ss_pred --------------------HHHHHHHHHHHHhhccccch-hhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009563 181 --------------------YSTYVVLRMLTGFSTGGVGL-CAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYI 239 (532)
Q Consensus 181 --------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 239 (532)
.|...+..++.=+=...+.. .-.....|.+..+|-.|..++++.+.+++..++..+..+
T Consensus 127 ~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~ 206 (509)
T COG3202 127 SRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW 206 (509)
T ss_pred HHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222221122222 234566788888999999999999999999999888888
Q ss_pred hhc
Q 009563 240 FQT 242 (532)
Q Consensus 240 l~~ 242 (532)
+..
T Consensus 207 ~~k 209 (509)
T COG3202 207 LSK 209 (509)
T ss_pred Hhh
Confidence 763
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00078 Score=65.59 Aligned_cols=103 Identities=14% Similarity=0.182 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc---ch------HHHHHHHHHHHHhhccccchhhhheeecccCCC---chhHHHHHHHHHH
Q 009563 159 GSLTVVCMMNAVFGCLTAFS---PN------YSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPS---KRGAAGMSTFYFF 226 (532)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~---~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 226 (532)
+++++|.++..+|.++..++ .+ .+.++++-++.++|.|+.-|....+++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888889998884433 22 367899999999999999999999999999865 4667788899999
Q ss_pred HHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHH
Q 009563 227 STGIALLSGIAYIFQ---TWRALYIASSIPSILFLLII 261 (532)
Q Consensus 227 ~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~ 261 (532)
++|..++..+.+++. +|.+.|.+.++..++..+..
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 999999998887776 99999999888777766333
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.002 Score=61.68 Aligned_cols=114 Identities=19% Similarity=0.208 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHH---HHHHHHhhcchHHHHHHHHHHHHhhccccchh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNA---VFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLC 201 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 201 (532)
-.++..+....|.+|-.++.--...+ | +-+-+++.+--.+.. +.....-+.++.|.+++.-+..|+..|..++.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--r-ir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--R-IRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--e-hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 46788888888888877765443322 3 422222222222222 22223335688999999999999999999999
Q ss_pred hhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 202 AFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 202 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
....+.|-.++++|...++..+.+-++|..++..++-.+.
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887764
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00029 Score=50.29 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=46.2
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMN 168 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~ 168 (532)
|...++.|+ +..|+|.+.++..+...++.+++|.++|| +|+++.++....+.
T Consensus 24 ~~~~~~~Gl---~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 24 PLYLKQLGL---SPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM 75 (77)
T ss_pred hHhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence 666678999 99999999999999999999999999999 99988887766553
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0048 Score=58.98 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhcc---c-hhHHHHHHHHHHHHHHHHhhhhhHh
Q 009563 376 LNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNN---G-IWKIVRMICGVMGIFGVAGTYNLLF 451 (532)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (532)
+...+..+..++..+.+.|+.||+|-|....++..+.+++..+=...... + .+.-+......+.+...........
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPs 162 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPS 162 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcccc
Confidence 44455566777888899999999999999999999998888776554332 1 1111334444444444433333434
Q ss_pred hhccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 009563 452 IYTTELFPTVVRNAALGCATQAAQLGAILAPFV 484 (532)
Q Consensus 452 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~ 484 (532)
-...--+|+++|+++..+..+.+.+|.+++-++
T Consensus 163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 455556899999999999998888887766443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.015 Score=54.30 Aligned_cols=137 Identities=16% Similarity=0.174 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIY 453 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (532)
.........+.+.+...+.|.+.||+|||+..+...++..++++.... ++.. .+++.=++.|++....++..-++
T Consensus 71 Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~~~----~L~~GRvlgGiaTSLLfS~FEsW 145 (354)
T PF05631_consen 71 IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SNYP----VLLLGRVLGGIATSLLFSAFESW 145 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cccH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444566677788999999999999998888888888864332 2211 56677778888887777755443
Q ss_pred c-c----ccccchhhhhHHHHHHHH-HHHH----HHHHHHHH-H--hhhhhHHHHHHHHHHHHHHHHh-hccCCCC
Q 009563 454 T-T----ELFPTVVRNAALGCATQA-AQLG----AILAPFVV-V--LGGWLPFAVFAACGIIGGLFAF-YLPETLN 515 (532)
Q Consensus 454 ~-~----~~~p~~~r~~~~g~~~~~-~~~g----~~i~p~~~-~--~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 515 (532)
. . .-+|++..+..++..... +.+- +.++..+. . .|...+|.....+.+++.++.. ..+|..+
T Consensus 146 ~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 146 MVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 3 2 235666666666544422 2222 33333333 2 3457788888888777776654 3355443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0048 Score=50.88 Aligned_cols=98 Identities=13% Similarity=-0.038 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchh
Q 009563 383 VAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVV 462 (532)
Q Consensus 383 ~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 462 (532)
....+..++.+.+.+++|.|+.++++.+...+......... . +..+....+.|++.+..+...-.++.+...++.
T Consensus 48 ~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~---~--~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~ 122 (156)
T PF05978_consen 48 GSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPN---S--YTLYPASALLGFGAALLWTAQGTYLTSYSTEET 122 (156)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---H--HHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence 44556778889999999999999999888776665543321 1 167788889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 009563 463 RNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 463 r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+++-.++...+...+.++|..+.
T Consensus 123 ~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 123 IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888887777655
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0087 Score=53.01 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=34.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH--HH-----Hhh-chHHHHHHHHHHHHHHHHHHhc
Q 009563 213 SKRGAAGMSTFYFFSTGIALLSGI--AY-----IFQ-TWRALYIASSIPSILFLLIILP 263 (532)
Q Consensus 213 ~~r~~~~~~~~~~~~~G~~~~~~l--~~-----~l~-~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
|+|+........+.++|.++.... -. .+. +|++++.+.+++.++.+++..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777788888888765432 11 111 8999999988887776633333
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0065 Score=59.33 Aligned_cols=120 Identities=19% Similarity=0.078 Sum_probs=92.3
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh------cc----hHHHHHHH
Q 009563 118 QWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF------SP----NYSTYVVL 187 (532)
Q Consensus 118 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~------~~----~~~~l~~~ 187 (532)
.-|+ ++..+|..-+...+....+.+...++.+| +|..+.-+++.....++..++.. .+ +...++.+
T Consensus 287 ~~G~---s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~g 362 (432)
T PF06963_consen 287 SQGY---SPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGG 362 (432)
T ss_pred HCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Confidence 3378 99999999999999999999999999999 99999888887655544443332 12 33444445
Q ss_pred HHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
-.+.=+|.=+......-++.|..|+++||...+.-....++-.++...++-.+.
T Consensus 363 i~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 363 IALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred HHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 555555555667778889999999999999999999888888887777665553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.011 Score=61.35 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHHHHHHhhhhhHhhhccccccc
Q 009563 386 MPAFTITAVLLDK-LGRKPMTIGTLWFSGFFCLLGSLVKNNG----IWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPT 460 (532)
Q Consensus 386 ~~~~~~~~~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 460 (532)
-+..+++|++.|+ +|+++.+.++.++..++..++.+..... ......++++.+...|.++.-|...+...|.+++
T Consensus 37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~ 116 (654)
T TIGR00926 37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE 116 (654)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc
Confidence 3566788899987 7999999999998888887776642211 1111355667777788888888888998888875
Q ss_pred h---hhhhHHHHHHHHHHHHHHHHHHHH-Hh-----------hhhhHHHHHHHHHHHHHHHH
Q 009563 461 V---VRNAALGCATQAAQLGAILAPFVV-VL-----------GGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 461 ~---~r~~~~g~~~~~~~~g~~i~p~~~-~~-----------~~~~~~~~~~~~~~~~~~~~ 507 (532)
+ .+...+.+.....++|+++++.+. .. ++...|.+.+++.+++.++.
T Consensus 117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 117 RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 3 366777778888889988887766 11 24445666666666555544
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.042 Score=52.45 Aligned_cols=55 Identities=11% Similarity=-0.008 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 431 VRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+.++...+.++..|-...+.+.++.+..|++++..+-.+.......|-+.|..+.
T Consensus 345 ~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 345 WFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred HHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5667777888888888888999999999988876666666655555555555443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.096 Score=51.97 Aligned_cols=98 Identities=11% Similarity=-0.011 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh--hccch--------------------------hHHHHHHHHHH
Q 009563 387 PAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV--KNNGI--------------------------WKIVRMICGVM 438 (532)
Q Consensus 387 ~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~--------------------------~~~~~~~~~~~ 438 (532)
+..++-+++++|++|++++...........+++.+. +.... .| ...+..+.
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W-~~~~FYv~ 137 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIW-SFALFYVM 137 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhh-hHHHHHHH
Confidence 336778999999999998876665555555555443 11100 11 12223333
Q ss_pred HHHHHHhhhh-hHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 439 GIFGVAGTYN-LLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 439 ~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.........+ +.|.+++|.+..++..+-.++....+++|.++++.+.
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555 7899999999999999999999999999999999777
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.012 Score=58.32 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=88.4
Q ss_pred cchHHHHHHHHHHHHH--HHHHHHHHHHhhh-----CCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009563 371 QTNLYLNVLVNAVAEM--PAFTITAVLLDKL-----GRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGV 443 (532)
Q Consensus 371 ~~~~~~~~~~~~~~~~--~~~~~~~~l~d~~-----gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (532)
+.+.........+..+ ...++.|.++|-+ .||+.++++.++..++.+.+...+..........++.++..++.
T Consensus 21 ~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~ 100 (433)
T PF03092_consen 21 GLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGY 100 (433)
T ss_pred CCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence 3334333333333333 4667899999986 35566677777776666666665553222224455666667777
Q ss_pred HhhhhhHhhhcccccc--chhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhhcc
Q 009563 444 AGTYNLLFIYTTELFP--TVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYLP 511 (532)
Q Consensus 444 ~~~~~~~~~~~~~~~p--~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 511 (532)
...-.+.-+...|... ++.++...+.......+|++++..+. ..++...|.+.+.+..+..+..+++.
T Consensus 101 a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~ 175 (433)
T PF03092_consen 101 AFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLL 175 (433)
T ss_pred HHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhh
Confidence 7777777778778763 23377888888888888887776555 44566677777776666655554443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00033 Score=65.99 Aligned_cols=106 Identities=10% Similarity=-0.065 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHhhhcc---------chhHHHHHHHHHHHHHHHHhhh
Q 009563 378 VLVNAVAEMPAFTITAVLLDKL-GRKPMTIGTLWFSGFFCLLGSLVKNN---------GIWKIVRMICGVMGIFGVAGTY 447 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 447 (532)
.....++.++|+.+..+..-+. .+|++. +..++=.+..-++...... -...++.++..+++++..|-..
T Consensus 188 fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 188 FLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 3455677888888877643221 234333 3222222222222222100 0111256677788888888888
Q ss_pred hhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 009563 448 NLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFV 484 (532)
Q Consensus 448 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~ 484 (532)
+....+..+..++++|..+..+....-.+|-.+|..+
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp HHHH---------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998888888777777666676666554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.064 Score=54.32 Aligned_cols=140 Identities=15% Similarity=0.027 Sum_probs=80.9
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH---HHHH----hhcchH-HHHHHHHH
Q 009563 118 QWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVF---GCLT----AFSPNY-STYVVLRM 189 (532)
Q Consensus 118 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~---~~~~----~~~~~~-~~l~~~r~ 189 (532)
-+|- +..+.+.+.+++.+|.++|+.+++++.++ ..++...+-..+..++ ..+. ++...+ ..++..-+
T Consensus 44 ~~G~---s~~~~~~ii~~fl~glalGs~l~~~~~~~--~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 118 (521)
T PRK03612 44 LLGD---SVTQFSTVIGLMLFAMGVGALLSKYLLRD--AAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVL 118 (521)
T ss_pred HhCc---hHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 78889999999999999999999988754 3333332222221111 1111 111111 22334455
Q ss_pred HHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhc
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILP 263 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
+.|+..|+..|....+..+.. .++-+...+-......+|.++|.++.+++. |-....++.+.+.++..++.++
T Consensus 119 ~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~ 195 (521)
T PRK03612 119 LIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW 195 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 677778888887766655432 123456667777888888888888777665 4333344444444444433333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.018 Score=59.17 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhh-------------------c-------------------
Q 009563 383 VAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVK-------------------N------------------- 424 (532)
Q Consensus 383 ~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~-------------------~------------------- 424 (532)
++.++......+...|.-|-+.+-++.++++++.++..+.+ .
T Consensus 143 ig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 222 (735)
T KOG3626|consen 143 IGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPS 222 (735)
T ss_pred cchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCC
Confidence 44455555566666677777788888888888888876641 0
Q ss_pred --------c--chhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH---------
Q 009563 425 --------N--GIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV--------- 485 (532)
Q Consensus 425 --------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~--------- 485 (532)
. ...+.++++..++.|+|....+++..+|+-|...++.-....|+..++..+|-++|=.+.
T Consensus 223 ~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD 302 (735)
T KOG3626|consen 223 PENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD 302 (735)
T ss_pred CCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec
Confidence 0 013346677788888888889999999999999999989999999988776655543333
Q ss_pred --------------Hhh-hhhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 009563 486 --------------VLG-GWLPFAVFAACGIIGGLFAFYLPETLNKP 517 (532)
Q Consensus 486 --------------~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 517 (532)
..| ++..|++.+.+.++..+.++++|+..+++
T Consensus 303 ~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 303 FGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred cccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 122 56678888999999888889988765543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.2 Score=49.21 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC--CCCchHHHHHHHHHHHHHHHHHhhc------------------chHHHHHHH
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDS--RLGRKGSLTVVCMMNAVFGCLTAFS------------------PNYSTYVVL 187 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr--~~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~ 187 (532)
..++..-...+|..++..+.+.+.+| ++||++.+.++.++..++.++.-.. +++...++.
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii 359 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALII 359 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHH
Confidence 34444444555566666677777754 3899999999999998888877543 246677888
Q ss_pred HHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF 240 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 240 (532)
-++.|++-+......+.++.+.+ +++|..+.++...-..++..++.......
T Consensus 360 ~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 360 GFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 89999999999999999999999 67889888888888888777665554443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.18 Score=48.68 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhh
Q 009563 386 MPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNA 465 (532)
Q Consensus 386 ~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 465 (532)
++..+....+.|.++.|++++++.+...+...++.+..+.. ...+..++.|...+. -....+++-...|+++--+
T Consensus 55 l~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~----~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~ 129 (412)
T PF01770_consen 55 LAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL----AMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQK 129 (412)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH----HHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHH
Confidence 34455667789999999999998888887777777664433 355566666655433 4455677777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH----Hhh---hhhHHHHHHHHHHHHHHHHhhccCC
Q 009563 466 ALGCATQAAQLGAILAPFVV----VLG---GWLPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 466 ~~g~~~~~~~~g~~i~p~~~----~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
+.+.......+|.+++..+. ..+ +.....+......++.+..+++|..
T Consensus 130 vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 130 VTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888877766666655555 322 3444445555555666666777643
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.00094 Score=67.68 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=2.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhc---------------------------------
Q 009563 378 VLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKN--------------------------------- 424 (532)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 424 (532)
....-++.++..++..++.+|..|-+.+-.+.++++++.+++.+.+-
T Consensus 44 ~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 123 (539)
T PF03137_consen 44 SSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQAS 123 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccccccccccccc
Confidence 33444566667777777777777777888888888888888765410
Q ss_pred -------------cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH------
Q 009563 425 -------------NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV------ 485 (532)
Q Consensus 425 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~------ 485 (532)
......+++++.++.|++....+++..+|+-|..+++..+...|+......+|-++|=.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 124 SDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRI 203 (539)
T ss_dssp ----------------------------SSS-------------------------------------------------
T ss_pred CccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhc
Confidence 0011235667778888899999999999999999999989999998887766654442222
Q ss_pred --------------------Hhh-hhhHHHHHHHHHHHHHHHHhhccCC
Q 009563 486 --------------------VLG-GWLPFAVFAACGIIGGLFAFYLPET 513 (532)
Q Consensus 486 --------------------~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (532)
..| ++..|++.+++.++..+..+.+|+.
T Consensus 204 yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 204 YVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp -------------------------------------------------
T ss_pred eeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 012 4556777777777777777776653
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.28 Score=45.74 Aligned_cols=109 Identities=24% Similarity=0.216 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYT 454 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (532)
........+...++.++.|.+.||.|||+.+..+.....++.+...+... ...+ ...+.....+++.+...+....+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~g~~~~~~~~~~~~~~ 119 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-VGLA-LLLILRLLQGLGGGGLLPVASALL 119 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-chHH-HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33344445556667789999999999997777766554444344444433 1111 344444446777778888999999
Q ss_pred cccccc-hhhhhHHHHHHH-HHHHHHHHHHHHH
Q 009563 455 TELFPT-VVRNAALGCATQ-AAQLGAILAPFVV 485 (532)
Q Consensus 455 ~~~~p~-~~r~~~~g~~~~-~~~~g~~i~p~~~ 485 (532)
.|..|. +.|+...+.... ...+|..++|.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T COG0477 120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLA 152 (338)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 677888888877 4666777777554
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.053 Score=49.19 Aligned_cols=125 Identities=10% Similarity=0.015 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhhccC-CCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccCCCch
Q 009563 137 FFGCMIGAGVFGHLSDS-RLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKR 215 (532)
Q Consensus 137 ~l~~~~~~~~~g~l~dr-~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 215 (532)
.+...+..+....+.|| .||.|. .+..++.+.+.++.+++++.++-+++-.+..++.|.-...-.++-+. ++
T Consensus 72 ilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y~---- 144 (409)
T KOG3880|consen 72 ILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-YP---- 144 (409)
T ss_pred hhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-CC----
Confidence 33444455555666676 255554 45556777888889999999999999999888888765544433222 21
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHhcccccC
Q 009563 216 GAAGMSTFYFFSTGIALLSGIAYIFQ-----TWRALYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 216 ~~~~~~~~~~~~~G~~~~~~l~~~l~-----~wr~~f~~~~~~~~~~~~~~~~~~~es 268 (532)
....+-++.+.+...++|..--..+. .-|...++...+.++.+...++.++++
T Consensus 145 ~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 145 SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 22233334444433444433222222 556777777766666663445555443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.18 Score=35.90 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhhccccCcchHHHHHH---HHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 009563 352 INFLCSVVYYGISLNVVNLQTNLYLNVL---VNAVAEMPAFTITAVLLDKLGRKPMTIGTLWF 411 (532)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~ 411 (532)
.+...+..+-..+.+..+.+.+...... +.-+..+++.++.|.++||+++++.......+
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3333444444556666666655554444 34456778999999999999999887765544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.3 Score=45.07 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 434 ICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
...++.++..++..|...-+..+... +.-+...|-.+....+|+++|+++.
T Consensus 115 ~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~ 165 (521)
T PRK03612 115 VLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAF 165 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHH
Confidence 34445567777777776655554322 1234555666666666766666555
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.21 Score=48.68 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccch-----hHHHHHHHHHHHHHHHHhhhhhHhhhccccccch---hhhhHHHHHHHHH
Q 009563 403 PMTIGTLWFSGFFCLLGSLVKNNGI-----WKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTV---VRNAALGCATQAA 474 (532)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~ 474 (532)
+++.++.++..++.+++.+...... .....++.+.+.++|.++.-|...++..|.++++ .|...+.......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 4567777888888777544422211 1115677788889999999999999999999765 4566777777888
Q ss_pred HHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhh
Q 009563 475 QLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 475 ~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
++|..+++.+. ..++...|.+.++..+++.+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 89988887665 355777777777777776655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.2 Score=41.95 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 434 ICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+.....-+|.-+.-....-...|..|++.|..+.|+.|..+.....+--++.
T Consensus 391 agVaaaR~GLW~fDlAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~ilv 442 (503)
T KOG2601|consen 391 AGVAAARLGLWMFDLAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDILV 442 (503)
T ss_pred HHHHHHHhhHHhccHHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhEE
Confidence 3333334444444456667788999999999999999999887776665554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.8 Score=42.99 Aligned_cols=110 Identities=21% Similarity=0.276 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCch--HHHHHH--HHHHHHHHHHHhh---------cchHHHHHHHHHHHHhh
Q 009563 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRK--GSLTVV--CMMNAVFGCLTAF---------SPNYSTYVVLRMLTGFS 194 (532)
Q Consensus 128 ~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr--~~l~~~--~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~ 194 (532)
..-++...|.+|-.+|..+..+.. . -++| .+.... =+++.--.++|.. -++-+..++..++.|+.
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence 445667778888888888665432 1 1222 332222 2223333334432 24667777889999999
Q ss_pred ccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009563 195 TGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYI 239 (532)
Q Consensus 195 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 239 (532)
.|-....+..+..+..++++|..+..+...+..+|..+|..++..
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888877544
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.74 E-value=8.5 Score=38.76 Aligned_cols=101 Identities=14% Similarity=0.029 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhh--hcc-----ch-------------hH-------HHHHHHHH
Q 009563 385 EMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLV--KNN-----GI-------------WK-------IVRMICGV 437 (532)
Q Consensus 385 ~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~--~~~-----~~-------------~~-------~~~~~~~~ 437 (532)
.++..++-.++.++++|.++..+..........++++. +.. +. .+ |...+..+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 44556677889999999988766555555544444443 110 00 00 01111112
Q ss_pred HHHHHHHhhhh-hHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 438 MGIFGVAGTYN-LLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 438 ~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
..-.......+ ..|.+++|.++.++..+..++....+++|.++++.+.
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~ 200 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLT 200 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333 5699999999999999999999999999998887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.54 Score=42.98 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhhe
Q 009563 126 KYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVL 205 (532)
Q Consensus 126 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 205 (532)
..|+-|....|.+|-.++.--....--++.=--.++-.-.+++.+...+..+.++++..++.-+..|+-.|..++...--
T Consensus 287 ~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~ 366 (409)
T KOG3880|consen 287 DSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHN 366 (409)
T ss_pred hhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence 45678888888887544322211111100000112233345555666667788999999999999999889889888888
Q ss_pred eecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009563 206 ATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ 241 (532)
Q Consensus 206 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 241 (532)
+.+-.++++|-.+++...++-++|..++..++-.+.
T Consensus 367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 888788899999999999999999998888775553
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.72 E-value=4.3 Score=38.69 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=47.3
Q ss_pred HHHHHHHh-----hhCCchhHH-HHHHHHHHHHHHHHhhhccc------hhH-HHHHHHHHHHHHHHHhhhhhHhhhccc
Q 009563 390 TITAVLLD-----KLGRKPMTI-GTLWFSGFFCLLGSLVKNNG------IWK-IVRMICGVMGIFGVAGTYNLLFIYTTE 456 (532)
Q Consensus 390 ~~~~~l~d-----~~gr~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (532)
++...++| |+|||+..+ -+..+....++++....+.. .+. .......++..+..+.--...-.+...
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt 160 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT 160 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 45666677 899988654 45556666666665543221 111 011112233333332222233445555
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 457 LFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 457 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
+..++..|-+..........|.+++-.+.
T Consensus 161 mLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 161 MLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 56666666555544444555665554443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.52 E-value=12 Score=34.98 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhheeecccCC--Cch-
Q 009563 139 GCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATEPVGP--SKR- 215 (532)
Q Consensus 139 ~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r- 215 (532)
..+.+.++.+.+..+ +|-|.++.++.......- ..-+-+.+..++-.-.+.|+|.+..+..--+|+++.... ++|
T Consensus 70 ~l~~s~m~~~~~Ir~-~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~ 147 (390)
T KOG3097|consen 70 SLIDSSMFMPLLIRF-LGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRG 147 (390)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhh
Confidence 344455555577787 999999998887765542 223447889999999999999999999988998876543 233
Q ss_pred ------------hHHHHHHHHHHHHHHHHHHHH
Q 009563 216 ------------GAAGMSTFYFFSTGIALLSGI 236 (532)
Q Consensus 216 ------------~~~~~~~~~~~~~G~~~~~~l 236 (532)
+....+++...-.|.++...+
T Consensus 148 ~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 148 EQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 233445555555565554443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.54 Score=45.56 Aligned_cols=103 Identities=9% Similarity=-0.030 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhh----hCCchhHH-HHHHHHHHHHHHHHhhhcc--------ch----h-HHHHHHHHHHHHHHHH
Q 009563 383 VAEMPAFTITAVLLDK----LGRKPMTI-GTLWFSGFFCLLGSLVKNN--------GI----W-KIVRMICGVMGIFGVA 444 (532)
Q Consensus 383 ~~~~~~~~~~~~l~d~----~gr~~~~~-~~~~~~~~~~~~~~~~~~~--------~~----~-~~~~~~~~~~~~~~~~ 444 (532)
+.+++...+.|..+|| +||||..+ .+.....++++++.+..+. .. . ....++...+.-+...
T Consensus 78 i~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n 157 (498)
T KOG0637|consen 78 LSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANN 157 (498)
T ss_pred cccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhh
Confidence 4456677788899996 67776654 5556666666666554221 11 1 1123333444445555
Q ss_pred hhhhhHhhhccccccchhhhh-HHHHHHHHHHHHHHHHHHHH
Q 009563 445 GTYNLLFIYTTELFPTVVRNA-ALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 445 ~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~~~g~~i~p~~~ 485 (532)
......-++..|+..++.+.+ +.+....+..+|+.+|=.+.
T Consensus 158 ~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g 199 (498)
T KOG0637|consen 158 TLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG 199 (498)
T ss_pred hhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence 667788899999987777777 88888888777776654333
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.87 E-value=2.8 Score=40.43 Aligned_cols=112 Identities=22% Similarity=0.221 Sum_probs=81.7
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHhhccCCCCchHHHHHHHHH-HHHHHHH-H------hhcchHHHHHHHHHHHHhhcc
Q 009563 126 KYKVGLVQAL-FFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMM-NAVFGCL-T------AFSPNYSTYVVLRMLTGFSTG 196 (532)
Q Consensus 126 ~~~~~~~~s~-~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~-~~~~~~~-~------~~~~~~~~l~~~r~l~G~~~~ 196 (532)
+...-++..+ |.+.-.+|.+...++-++ +||...+...+= ..+-.+. | .+-++-+++++...+.|+..|
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG 358 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG 358 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence 4445555666 889999998888888775 555544443321 1222222 1 223577888999999999999
Q ss_pred ccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009563 197 GVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYI 239 (532)
Q Consensus 197 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 239 (532)
-.....+.+..+-.+++++..+..+.......|...|..++..
T Consensus 359 Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 359 YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred hHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999888888888888888777543
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.62 E-value=9.2 Score=33.96 Aligned_cols=35 Identities=17% Similarity=0.017 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH
Q 009563 383 VAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCL 417 (532)
Q Consensus 383 ~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~ 417 (532)
++..++.+-+-+++.|+.-|.+.+.+..+..++.+
T Consensus 251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl 285 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGL 285 (294)
T ss_pred HHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHH
Confidence 33444444455678888888777666655555433
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.34 E-value=2.3 Score=31.77 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 009563 127 YKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVF 171 (532)
Q Consensus 127 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~ 171 (532)
.+.+.-.+.=+++..+.....||+.||++|.++..++..++.+.+
T Consensus 42 ~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 42 YAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 344555666778888888889999999778887766665554443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.23 E-value=23 Score=33.40 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHH----HHHH-hhc----chHHHHHHHHHHHHhhc
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVF----GCLT-AFS----PNYSTYVVLRMLTGFST 195 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~----~~~~-~~~----~~~~~l~~~r~l~G~~~ 195 (532)
+--|.+.+.+.|..++.+|+...-++.|. --.-+.+..-.++..++ .++. .|+ ++-+.+++.-++.|.-.
T Consensus 41 ~Ilq~S~Iia~yl~amGlGs~~sry~~dd-~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LV 119 (508)
T COG4262 41 GILQTSLIIAGYLAAMGLGSLLSRYVLDD-AALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLV 119 (508)
T ss_pred ceeehHHHHHHHHHHhchhhhhhccccCc-hHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 44688999999999999999999998885 23332333222222222 1111 222 46778889999999999
Q ss_pred cccchhhhheeec
Q 009563 196 GGVGLCAFVLATE 208 (532)
Q Consensus 196 ~~~~~~~~~~i~~ 208 (532)
|.-.|..+.++..
T Consensus 120 G~EiPL~mrml~~ 132 (508)
T COG4262 120 GAEIPLLMRMLQR 132 (508)
T ss_pred hcchHHHHHHHHH
Confidence 9999998888766
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=84.46 E-value=0.33 Score=45.79 Aligned_cols=109 Identities=20% Similarity=0.268 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHH--HHHHHHHHHHHh----------hcchHHHHHHHHHHHHhhcccc
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVV--CMMNAVFGCLTA----------FSPNYSTYVVLRMLTGFSTGGV 198 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~--~~~~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~~~~ 198 (532)
.+...|.++-.+|..+.++.-=+.-.+|.....+ =+++.-..++|. +.+|-+..++..++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 3566788888888888776421100244433321 122222222221 2245567788899999999999
Q ss_pred chhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009563 199 GLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYI 239 (532)
Q Consensus 199 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 239 (532)
......+..+..++++|..+..+...+..+|..+|..++..
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888777544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=82.42 E-value=7.8 Score=28.10 Aligned_cols=52 Identities=8% Similarity=-0.086 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccc
Q 009563 375 YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNG 426 (532)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (532)
........++.++|.+...++.++.++++.+..+.++..+..+.+.+..+..
T Consensus 30 g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 30 GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 4445556678888988888888887778888899999999888888876553
|
Note that many members are hypothetical proteins. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.63 E-value=6.9 Score=35.33 Aligned_cols=119 Identities=23% Similarity=0.208 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhh-ccccc----
Q 009563 384 AEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIY-TTELF---- 458 (532)
Q Consensus 384 ~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---- 458 (532)
..++...+.|-+.||.|||+.-+.-.+...++++. ...+.+. +.++.-++.|+.....++..-++ +.|..
T Consensus 84 SsmLFGtivgSLaDkqGRKracvtycitYiLsCiT----KhSpqYk-VLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~ 158 (454)
T KOG4332|consen 84 SSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT----KHSPQYK-VLMVGRVLGGIATSLLFSAFESWLIAEHNEKRG 158 (454)
T ss_pred hHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh----hcCCceE-EEeehhhhhhHHHHHHHHHHHHHHHHHhhhccC
Confidence 34455667788999999998765444444443332 2222222 45666677777777766654433 34443
Q ss_pred -cchhhhhHHHHHHHH-----HHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHH
Q 009563 459 -PTVVRNAALGCATQA-----AQLGAILAPFVV---VLGGWLPFAVFAACGIIGGLFA 507 (532)
Q Consensus 459 -p~~~r~~~~g~~~~~-----~~~g~~i~p~~~---~~~~~~~~~~~~~~~~~~~~~~ 507 (532)
|++-....++=...+ ..+.+..+..+. ..|+-.+|-..++...++..+.
T Consensus 159 FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 159 FEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVI 216 (454)
T ss_pred ChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 333323222222211 122333344444 4566777776666655554443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.98 E-value=63 Score=32.28 Aligned_cols=102 Identities=17% Similarity=0.060 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhc-------------------cc-h--hH------HHHHHH
Q 009563 384 AEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKN-------------------NG-I--WK------IVRMIC 435 (532)
Q Consensus 384 ~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~-------------------~~-~--~~------~~~~~~ 435 (532)
++++..++-.++.+++.+.++..........+.+++++.-. .+ . |. |...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 34566777888888888888876655555555555554311 00 0 00 122222
Q ss_pred HHHHHHHHHhhhh-hHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 436 GVMGIFGVAGTYN-LLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 436 ~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.++.-.......+ +.+..++|....++..+-.++.+...+++..++..+.
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~ 204 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2233233333344 6788999999999999999999999998887776655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 532 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-04 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 60/409 (14%), Positives = 115/409 (28%), Gaps = 60/409 (14%)
Query: 126 KYKVGLVQALFFFGCMIGAGVFGHLSD---SRLGRKGSLTVVCMMNAVFGCLTAFSPNYS 182
+ +G + + G +SD R+ L + + G + + + +
Sbjct: 61 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 120
Query: 183 TYVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAG--MSTFYFFSTGIA--LLSGIAY 238
VL L G+ G +RG + + GI L
Sbjct: 121 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180
Query: 239 IFQTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPD 298
F W A + +IL L + ++P
Sbjct: 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTP----------------------------- 211
Query: 299 GVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTI-NFLCS 357
K +Y ++ K + + + +L + I N
Sbjct: 212 ------QSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVY 265
Query: 358 VVYYGISLN--VVNLQTNLYLNVL-VNAVAEMPAF-----TITA-VLLDKLGRKPMTIGT 408
++ YGI L+ L+ + + + + + T+ + DK+ R
Sbjct: 266 LLRYGI-LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324
Query: 409 LWF-SGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAAL 467
++F + N V MIC ++ F + G L+ ++ EL P A
Sbjct: 325 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 384
Query: 468 GCATQAAQLGA-----ILAPFVVVLGGWLPFA-VFAACGIIGGLFAFYL 510
G LG + + V GW V I+ + +
Sbjct: 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 8/151 (5%)
Query: 128 KVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCL----TAFSPNYST 183
K L+ + + G + G +SD T V M V + N +
Sbjct: 289 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 348
Query: 184 YVVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAG--MSTFYFFSTGIALLSGIAYIFQ 241
++ ++ GF G + + A E G A F + +A + + Y
Sbjct: 349 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408
Query: 242 T--WRALYIASSIPSILFLLIILPFLPESPR 270
W ++ SIL +++++ + R
Sbjct: 409 FFGWDGGFMVMIGGSILAVILLIVVMIGEKR 439
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 12/147 (8%)
Query: 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTV--VCMMNAVFGCLTAFSPNYSTYVV 186
V V + + +G +SD R+GR+ + V M A + + + +
Sbjct: 37 VQSVMGAYLLTYGVSQLFYGPISD-RVGRRPVILVGMSIFMLATLVA--VTTSSLTVLIA 93
Query: 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIA-----LLSGIAYIFQ 241
+ G TG G+ A L + ++ ++ ++ L+ G+
Sbjct: 94 ASAMQGMGTGVGGVMARTLPRDLYERTQ--LRHANSLLNMGILVSPLLAPLIGGLLDTMW 151
Query: 242 TWRALYIASSIPSILFLLIILPFLPES 268
WRA Y+ + + ++PE+
Sbjct: 152 NWRACYLFLLVLCAGVTFSMARWMPET 178
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.94 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.42 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.34 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.24 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.1 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.09 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.09 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.96 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=346.70 Aligned_cols=424 Identities=21% Similarity=0.314 Sum_probs=304.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccc-----h
Q 009563 50 GPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFC-----E 124 (532)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~ 124 (532)
+++.|.+.++++++.++.++|...++.. . |.+.++++... .
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--------~--------------------------~~~~~~~~~~~~~~~~~ 52 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGT--------V--------------------------ESLNTVFVAPQNLSESA 52 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGT--------H--------------------------HHHHHHHTGGGCCCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHhcCCCCCCccc
Confidence 3667778788889999999998877665 3 66666664321 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHh------------------hcchHHHHHH
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTA------------------FSPNYSTYVV 186 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~ 186 (532)
+..+.|++.+++.+|..+|++++|+++|| +|||++++++.+++.+++++++ +++|++++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 56788999999999999999999999999 9999999999999999999998 4789999999
Q ss_pred HHHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----------chHHHHHHHHHHHH
Q 009563 187 LRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ-----------TWRALYIASSIPSI 255 (532)
Q Consensus 187 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-----------~wr~~f~~~~~~~~ 255 (532)
+|+++|+|.|+..+..+.+++|+.|+++|++..++.+.+..+|.++++.++.... +||+.+.+..++.+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998887653 58888888777777
Q ss_pred HHHHHHhcccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhh
Q 009563 256 LFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVID 335 (532)
Q Consensus 256 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (532)
+.. +..+++||||+|+..+++.+++++.+++....+... ++.. + .+ .. ....+.......
T Consensus 212 ~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~-----------~~~~--~-~~----~~-~~~~~~~~~~~~ 271 (491)
T 4gc0_A 212 LFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLAT-----------QAVQ--E-IK----HS-LDHGRKTGGRLL 271 (491)
T ss_dssp HHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHHH--H-HH----HH-HHHHHHHTTHHH
T ss_pred hhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhH-----------HHHH--H-HH----HH-HHhhhhhhhHHH
Confidence 766 778899999999999999999998888764431100 0000 0 00 00 000000111222
Q ss_pred hhcChHHHHHHHHHHHHHHH-HHHHHHHhhhccccCc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 009563 336 VIKSPLTRIRLFLAVTINFL-CSVVYYGISLNVVNLQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWF 411 (532)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~ 411 (532)
.++.+..........+..+. .....+..+......+ ..........++..+++.++++++.||+|||+.++.+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~ 351 (491)
T 4gc0_A 272 MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG 351 (491)
T ss_dssp HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHH
Confidence 33333333332222222221 1222222222222222 2233444566677888999999999999999999988888
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHH-HHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----
Q 009563 412 SGFFCLLGSLVKNNGIWKIVRMICGVMGIFG-VAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV----- 485 (532)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----- 485 (532)
+.++++.+.............++...+...+ .....++.+.+.+|++|++.|+++.|+.+..++++++++|.+.
T Consensus 352 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 352 MAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776655432222111233333333333 3334567889999999999999999999999999988887664
Q ss_pred ------HhhhhhHHHHHHHHHHHHHHHH-hhccCCCCCChhhhHHhhhhc
Q 009563 486 ------VLGGWLPFAVFAACGIIGGLFA-FYLPETLNKPLYDTMAGMKEG 528 (532)
Q Consensus 486 ------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 528 (532)
..+....|++++++++++.++. +++||||+|++||.++..|++
T Consensus 432 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 432 NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 1234556788888888877765 688999999999877655543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=301.42 Aligned_cols=390 Identities=15% Similarity=0.088 Sum_probs=295.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHH
Q 009563 51 PWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVG 130 (532)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~ 130 (532)
+.+|+.+..++++.+..+++....... . |.+.+++ + +..+.|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~~~~~~-~---s~~~~g 65 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALA--------M--------------------------PYLVEQG-F---SRGDLG 65 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHH--------H--------------------------HHTTSST-T---CSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHh-c---cHhHHH
Confidence 456778888888888888887766665 4 8888999 8 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHHhhccccchhhhhee
Q 009563 131 LVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAF----SPNYSTYVVLRMLTGFSTGGVGLCAFVLA 206 (532)
Q Consensus 131 ~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 206 (532)
++.+++.++..++++++|+++|| +|||+++.++.++.+++.+++++ +++++.++++|+++|++.+...+...+++
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i 144 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHH
Confidence 99999999999999999999999 99999999999999999999999 99999999999999999999999999999
Q ss_pred ecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---c-hHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHHH
Q 009563 207 TEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---T-WRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAM 282 (532)
Q Consensus 207 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~-wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 282 (532)
.|++|+++|++++++...+..+|.++++.+++.+. + ||+.|++.+++.++..++.++++||+|+....+++.+
T Consensus 145 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 221 (451)
T 1pw4_A 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE--- 221 (451)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT---
T ss_pred HHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh---
Confidence 99999999999999999999999999999998765 7 9999999999888877677788899875321111000
Q ss_pred HHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 009563 283 KIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYYG 362 (532)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (532)
... +.+++. . ++..+.........++.++++.++...+..++..+........
T Consensus 222 -----------------~~~--~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 222 -----------------YKN--DYPDDY-N-------EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp -----------------TCC--C---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcc--cccccc-h-------hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000 0 0000000001111466778887776666666655555444445
Q ss_pred hhhcccc-CcchH---HHHHHHHHHHHHHHHHHHHHHHhhh--CCchhHHHHHHHHH-HHHHHHHhhhccchhHHHHHHH
Q 009563 363 ISLNVVN-LQTNL---YLNVLVNAVAEMPAFTITAVLLDKL--GRKPMTIGTLWFSG-FFCLLGSLVKNNGIWKIVRMIC 435 (532)
Q Consensus 363 ~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~--gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 435 (532)
.+.+..+ .+.+. ........++.+++.++.+++.||+ +||+.+..+..+.. ++++++.+....+.+ ...+.
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 352 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT--VDMIC 352 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH--HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH--HHHHH
Confidence 5555544 44333 3444556677889999999999999 99988887776666 555555444332322 45556
Q ss_pred HHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHH-HHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhh
Q 009563 436 GVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQL-GAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.++.+++.+...+....+..|.+|++.|+++.|+.+....+ |..++|.+. ..++...|++.+++.+++.++.++
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888889999999999999999999999999 999999887 235677888888888877776665
Q ss_pred cc
Q 009563 510 LP 511 (532)
Q Consensus 510 l~ 511 (532)
++
T Consensus 433 ~~ 434 (451)
T 1pw4_A 433 VM 434 (451)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-34 Score=281.90 Aligned_cols=365 Identities=15% Similarity=0.084 Sum_probs=274.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHHHH
Q 009563 52 WQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKVGL 131 (532)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~ 131 (532)
.++..+.++++..+..+++....... . |.+.+++|+ +..+.|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~~~~~~g~---s~~~~g~ 65 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDIL--------L--------------------------PQFQQAFTL---TNFQAGL 65 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHHHHSCC---CSHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHH--------H--------------------------HHHHHHcCC---CHHHHHH
Confidence 34555666667777778776666665 4 889999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHH---hhcchHHHHHHHHHHHHhhccccchhhhheeec
Q 009563 132 VQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLT---AFSPNYSTYVVLRMLTGFSTGGVGLCAFVLATE 208 (532)
Q Consensus 132 ~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 208 (532)
+.+++.+++.++++++|+++|| +|||++++++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|
T Consensus 66 ~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 144 (438)
T 3o7q_A 66 IQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHH
Confidence 9999999999999999999999 999999999999999999999 889999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----c-------------------------hHHHHHHHHHHHHHHHH
Q 009563 209 PVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----T-------------------------WRALYIASSIPSILFLL 259 (532)
Q Consensus 209 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~-------------------------wr~~f~~~~~~~~~~~~ 259 (532)
++|+++|++++++.+.+.++|..+++.+++.+. + ||+.|++.+++.++..+
T Consensus 145 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 224 (438)
T 3o7q_A 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVAL 224 (438)
T ss_dssp SSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765 2 99999888777666553
Q ss_pred HHhc-ccccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhc
Q 009563 260 IILP-FLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIK 338 (532)
Q Consensus 260 ~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (532)
+.++ ..||+++.. ++ + ++++..+.+++++++
T Consensus 225 ~~~~~~~p~~~~~~---~~------------------------------------~---------~~~~~~~~~~~~~~~ 256 (438)
T 3o7q_A 225 LIMLTKFPALQSDN---HS------------------------------------D---------AKQGSFSASLSRLAR 256 (438)
T ss_dssp HHHHCCCCCCTTTC---CC------------------------------------C---------SSTTSHHHHHHHHTT
T ss_pred HHHHHcCCcccccc---cc------------------------------------c---------ccccchhhhHHHHHh
Confidence 3332 234443100 00 0 000011225667888
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhc-cccC-cch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 009563 339 SPLTRIRLFLAVTINFLCSVVYYGISLN-VVNL-QTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSG 413 (532)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~ 413 (532)
++.++...+..++............+.+ ..+. +.+ .........++.+++.++.+++.||++||+.+..+.++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM 336 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8887776666555555443333333333 3332 322 3344455567788899999999999999999998888888
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----Hhh
Q 009563 414 FFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLG 488 (532)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~ 488 (532)
++++++.+..+. ...+..++.+++.+..++...++..|.+|++ ++.+.++.. ...+|+.++|.+. ..+
T Consensus 337 ~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 337 ALCLISAFAGGH-----VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHCCHH-----HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 777766654332 2334446777888888999999999999977 888888877 6778999998887 445
Q ss_pred -hhhHHHHHHHHHHHHHHHHhh
Q 009563 489 -GWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 489 -~~~~~~~~~~~~~~~~~~~~~ 509 (532)
+...|++.+++.++..++.+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 410 NIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp SSGGGGHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 666777665554444433333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=261.78 Aligned_cols=382 Identities=12% Similarity=0.015 Sum_probs=242.4
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhc
Q 009563 117 TQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-GRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFST 195 (532)
Q Consensus 117 ~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 195 (532)
+|+|+ +..+.+++.+++.++..++++++|+++|| + |||+++.++.++.+++.+++++++|++.++++|+++|++.
T Consensus 47 ~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 122 (491)
T 4aps_A 47 GDLHI---TRATAASIMAIYASMVYLSGTIGGFVADR-IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGT 122 (491)
T ss_dssp TSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHH
T ss_pred hhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44999 99999999999999999999999999997 4 9999999999999999999999999999999999999999
Q ss_pred cccchhhhheeecccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCch
Q 009563 196 GGVGLCAFVLATEPVGPSK--RGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPR 270 (532)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 270 (532)
+...+...+++.|++|+++ |+.++++.+.+.++|..++|.+++.+. +||+.|++.++..++..++.++..|+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999988 777888899999999999999999886 99999999887776665444433332211
Q ss_pred ----hHhhcCCHHHHHHHHHH--------------HHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccc
Q 009563 271 ----WYLVRGKLNEAMKIMRA--------------IAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGS 332 (532)
Q Consensus 271 ----~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (532)
....+.+.++.++..+. ....+..+.++..... ....... ....... ..+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~---~~~~~~~~ 275 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLL--TIVAIAI--PVFYFAW---MISSVKVT 275 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHH--HHHHHHH--HHHHHHH---HC------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh--hHHHHHH--HHHHHHH---Hhhccccc
Confidence 00011122222222221 1111111110000000 0000000 0000000 00000000
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccc-Cc---chHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHH--
Q 009563 333 VIDVIKSPLTRIRLFLAVTINFLCSVVYYGISLNVVN-LQ---TNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTI-- 406 (532)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~-- 406 (532)
..+..+..............+..........+.+..+ .+ ...........+..+++.++.+++.||++||+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~ 355 (491)
T 4aps_A 276 STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPT 355 (491)
T ss_dssp ------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchH
Confidence 0000011111112222222222221111111222111 11 12223334455667778889999999999986544
Q ss_pred ---HHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHH
Q 009563 407 ---GTLWFSGFFCLLGSLVK------NNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLG 477 (532)
Q Consensus 407 ---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g 477 (532)
.+..+.+++++++.... .....+ ...+..++.+++.+...+....++.|.+|++.|+++.|+.+....+|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 356 KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPL-WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTH-HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 66666666665555432 111111 45566777888888888999999999999999999999999999999
Q ss_pred HHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHhhc
Q 009563 478 AILAPFVV----VLGGWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 478 ~~i~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~l 510 (532)
..++|.+. ..++...|.+++++.+++.++.+++
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 2345667777777777766665544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-31 Score=255.86 Aligned_cols=315 Identities=11% Similarity=0.049 Sum_probs=236.5
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTG 192 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 192 (532)
|.+.+++|. +..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|
T Consensus 24 ~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 24 ADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99 (375)
T ss_dssp HHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 788999999 99999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCc
Q 009563 193 FSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESP 269 (532)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp 269 (532)
++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+. +||+.|++.+++.++..+...+++||++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 9999999999999999999999999999999999999999999999887 8999999999888887755777788875
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHH
Q 009563 270 RWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLA 349 (532)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (532)
+... + +++.+.++++.+++|.++...+..
T Consensus 180 ~~~~--~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 180 PVDA--P-------------------------------------------------RTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp TTTC--C-------------------------------------------------CCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred CCCc--c-------------------------------------------------cccHHHHHHHHhcCcchHHHHHHH
Confidence 3100 0 001112456677777766655555
Q ss_pred HHHHHHHHHHHHHhhhcccc-CcchH---HHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH-HHHHHHHHHhhhc
Q 009563 350 VTINFLCSVVYYGISLNVVN-LQTNL---YLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWF-SGFFCLLGSLVKN 424 (532)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~-~~~~~~~~~~~~~ 424 (532)
++............+.+..+ .+.+. ........++.+++.++.+++.||+++ .+..+... ...+...+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH--HHHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 55444444444444444433 22222 223334445666777777777777766 22222222 2222221111110
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 009563 425 NGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV 485 (532)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 485 (532)
.....+...+..++.+++.+...+....+..|..| +.|+++.|+.+....+|..++|.+.
T Consensus 287 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~ 346 (375)
T 2gfp_A 287 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS 346 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence 01111144566677788888889999999999998 8899999999999999998888766
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=233.20 Aligned_cols=354 Identities=13% Similarity=0.079 Sum_probs=220.3
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH---HHHhhcchHH-HHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFG---CLTAFSPNYS-TYVVLRM 189 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~ 189 (532)
.+++++|+ +..+.|++.+.+.+++.++++++|+++|| +|||++++++..+.+++. ....+++... .++..++
T Consensus 33 ~l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T 2cfq_A 33 WLHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI 108 (417)
T ss_dssp HHHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677999 99999999999999999999999999999 999999999888776532 2223332221 2345566
Q ss_pred HHHhhccccchhhhheeecccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhccc
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGP--SKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
+.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+. +||+.|++.++..++.. +..++.
T Consensus 109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~-~~~~~~ 187 (417)
T 2cfq_A 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA-VLLFFA 187 (417)
T ss_dssp GGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHH-HHSCSS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-HHHHHc
Confidence 66666555544444444445443 34566667777777888899999888776 89999998877765544 334444
Q ss_pred ccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHH
Q 009563 266 PESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIR 345 (532)
Q Consensus 266 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (532)
+|+|+. +.+. ++ +++ .+. ++.....++++++++.++..
T Consensus 188 ~~~~~~---~~~~------------------~~--------~~~----~~~---------~~~~~~~~~~~~~~~~~~~~ 225 (417)
T 2cfq_A 188 KTDAPS---SATV------------------AN--------AVG----ANH---------SAFSLKLALELFRQPKLWFL 225 (417)
T ss_dssp CCCCSC---SSCS------------------SS--------SSS----SCC---------CCCCHHHHHHHTTCHHHHHH
T ss_pred Cccccc---cccc------------------cc--------ccc----ccc---------ccccHHHHHHHhcCCchhhH
Confidence 432210 0000 00 000 000 00011134567788776654
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc-Cc-----c-hHHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 009563 346 LFLAVTINFLCSVVYYGISLNVVN-LQ-----T-NLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLL 418 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~ 418 (532)
.+..+.............+.+... .+ . ..........+..+++.++.+++.||+|||+.+..+..+.++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~ 305 (417)
T 2cfq_A 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 443232222211111112222111 11 1 1122233444567788999999999999999988888777776655
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHH-HHHHHHHHHHHHHHH-----HhhhhhH
Q 009563 419 GSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCA-TQAAQLGAILAPFVV-----VLGGWLP 492 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~i~p~~~-----~~~~~~~ 492 (532)
+.+..+ .+ ..++...+.+++.....+..+.++.|.+|++.|+++.++. +....+|++++|.+. ..++...
T Consensus 306 ~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~ 381 (417)
T 2cfq_A 306 SSFATS--AL--EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp HTTCCS--HH--HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHH
T ss_pred HHHhcc--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHH
Confidence 544322 21 3334444555555556666788999999999999999984 777888998888877 2355667
Q ss_pred HHHHHHHHHHHHHHHh-hccCCCCCCh
Q 009563 493 FAVFAACGIIGGLFAF-YLPETLNKPL 518 (532)
Q Consensus 493 ~~~~~~~~~~~~~~~~-~l~~~~~~~~ 518 (532)
|.+.+++.+++.++.+ ..+|+++.++
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 7777877777766654 4565554443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=233.09 Aligned_cols=145 Identities=12% Similarity=0.095 Sum_probs=131.3
Q ss_pred ceeeccc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHHHHHHHHHHhhcc-hHHHHH
Q 009563 114 STVTQWG------LFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL-GRKGSLTVVCMMNAVFGCLTAFSP-NYSTYV 185 (532)
Q Consensus 114 ~i~~~~~------~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~ 185 (532)
.+.+++| + +..+.+++.+++.++..++.+++|+++|| + |||+++.++.++.+++.++.++++ +++.++
T Consensus 38 ~l~~~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (524)
T 2xut_A 38 FLMTALLLSIPEEL---RGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113 (524)
T ss_dssp HHHHSCSSCCSSST---TTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHhcccccccc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3556677 8 99999999999999999999999999999 9 999999999999999999999999 999999
Q ss_pred HHHHHHHhhccccchhhhheeecccCCCchhHHHHH---HHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHH
Q 009563 186 VLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMS---TFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLL 259 (532)
Q Consensus 186 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~ 259 (532)
+.|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|.++++.+++.+. +||+.|++.+++.++..+
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876666 88999999999999888776 999999998888776654
Q ss_pred HHh
Q 009563 260 IIL 262 (532)
Q Consensus 260 ~~~ 262 (532)
+.+
T Consensus 194 ~~~ 196 (524)
T 2xut_A 194 FFW 196 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-12 Score=124.24 Aligned_cols=144 Identities=19% Similarity=0.154 Sum_probs=126.0
Q ss_pred eecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCC--CchHHHHHHHHHHH-HHHHHHhhc--chHHHHHHHHHH
Q 009563 116 VTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRL--GRKGSLTVVCMMNA-VFGCLTAFS--PNYSTYVVLRML 190 (532)
Q Consensus 116 ~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l 190 (532)
.+.+|+ +..+.+++.+...++..++.++.|++.|| + |||+.+.++.++.. ++.++..+. .+.+.+.+..++
T Consensus 280 ~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (451)
T 1pw4_A 280 KEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 355 (451)
T ss_dssp TTBSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 344888 99999999999999999999999999999 9 99999988887777 677777666 378888888999
Q ss_pred HHhhccccchhhhheeecccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhc
Q 009563 191 TGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFST-GIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILP 263 (532)
Q Consensus 191 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~ 263 (532)
.|++.+...+....++.|.+|+++|+++.++......+ |..+++.+.+.+. ||+..|++.++..++..++.++
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999 9999999998876 8999999988887776644433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-12 Score=122.75 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=124.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccchhhhh
Q 009563 125 EKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFSTGGVGLCAFV 204 (532)
Q Consensus 125 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 204 (532)
+....++..++..++..++.++.|++.|| +|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888889999999999999999 99999999999998888888888888888888888888887777777788
Q ss_pred eeecccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccCch
Q 009563 205 LATEPVGPSKRGAAGMS-TFYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPESPR 270 (532)
Q Consensus 205 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 270 (532)
++.|.+|++.|++..++ .+....+|..++|.+++.+. +++..|++.+++.++..++.++..||.++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999999999888 47888899999999998776 78888988888888777666666776543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=113.72 Aligned_cols=137 Identities=9% Similarity=0.010 Sum_probs=116.5
Q ss_pred eeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Q 009563 115 TVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFS 194 (532)
Q Consensus 115 i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 194 (532)
+.+.+|. +..+.+++.+.+.++..++.++.|++.|| +|||+.+.++.++..++.++..+.++.+.++.. ++.|++
T Consensus 286 ~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~ 360 (438)
T 3o7q_A 286 VEEIPGM---TAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAF 360 (438)
T ss_dssp HHHSTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHH
T ss_pred hhccCCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHH
Confidence 3455688 99999999999999999999999999999 999999999999999999999988887765544 889999
Q ss_pred ccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---c-hHHHHHHHHHHHHHHH
Q 009563 195 TGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---T-WRALYIASSIPSILFL 258 (532)
Q Consensus 195 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---~-wr~~f~~~~~~~~~~~ 258 (532)
.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+. | ++..|++.++..++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 361 MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999999989998866 888888776 55689999999988876 6 8888887766555544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=109.92 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhh
Q 009563 374 LYLNVLVNAVAEMPAFTITAVLLDK-LGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFI 452 (532)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~d~-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (532)
.........++..++.++.|+++|| +|||+++..+.++..++.++..+..+.. ..++..++.+++.+...+...+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~g~~~~~~~~~~~~ 131 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS----ALFGSIILIIIGTGFLKPNVST 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTT----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhccchHHH
Confidence 3444556667788999999999999 8999999999999998888877655433 4667778889999999999999
Q ss_pred hccccccchh--hhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHh
Q 009563 453 YTTELFPTVV--RNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAF 508 (532)
Q Consensus 453 ~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 508 (532)
++.|.+|++. |+.+.++.+....+|..++|.+. ..++...|++.++..+++.+..+
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 132 LVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 77888888899999999998887 35677788887776666655543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=104.96 Aligned_cols=150 Identities=13% Similarity=0.069 Sum_probs=115.1
Q ss_pred HhhhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 009563 362 GISLNVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSLVKNNGIWKIVRMICGVM 438 (532)
Q Consensus 362 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (532)
..+.+..+.+.+ .........++..++.++.|++.||+|||+.+..+..+..++.++..+.++.. ..++..++
T Consensus 22 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~l 97 (375)
T 2gfp_A 22 AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT----VLIAASAM 97 (375)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH----HHHHHHHH
Confidence 334444444433 33444555677788999999999999999999999999998888887764322 56667788
Q ss_pred HHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHH-HhhccC
Q 009563 439 GIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLF-AFYLPE 512 (532)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 512 (532)
.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+. ..++...|++.++..++..+. .+.+||
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 88898889999999999999999999999999999999999999887 346677777777776665553 345566
Q ss_pred CCC
Q 009563 513 TLN 515 (532)
Q Consensus 513 ~~~ 515 (532)
+++
T Consensus 178 ~~~ 180 (375)
T 2gfp_A 178 TRP 180 (375)
T ss_dssp CST
T ss_pred cCC
Confidence 543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-10 Score=111.77 Aligned_cols=153 Identities=14% Similarity=0.020 Sum_probs=113.3
Q ss_pred CceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhc-----chHHHHHHH
Q 009563 113 SSTVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFS-----PNYSTYVVL 187 (532)
Q Consensus 113 ~~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~ 187 (532)
|.+.++.+. +............+...++.++.+++.|| +|||+.++.+.....++.+..+.. ++...++..
T Consensus 301 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 301 PEVFKTLGA---STDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHSSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHhcCC---CccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 455566666 66666677777888889999999999999 999999999988888777665532 222222222
Q ss_pred HHHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHH
Q 009563 188 RMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ---------TWRALYIASSIPSILFL 258 (532)
Q Consensus 188 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~---------~wr~~f~~~~~~~~~~~ 258 (532)
-+..+.......+....+.+|.+|.+.|+++.++......+|..+++.+...+. ++.+.|++.++++++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 222222223345667789999999999999999999998898888776654442 45567888888888888
Q ss_pred HHHhcccccCc
Q 009563 259 LIILPFLPESP 269 (532)
Q Consensus 259 ~~~~~~~~esp 269 (532)
++.++++|||.
T Consensus 457 i~~~~~~PETk 467 (491)
T 4gc0_A 457 LFMWKFVPETK 467 (491)
T ss_dssp HHHHHHCCCCT
T ss_pred HHHHheecCCC
Confidence 78889999984
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-08 Score=100.36 Aligned_cols=133 Identities=9% Similarity=0.034 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHhhhhhH
Q 009563 373 NLYLNVLVNAVAEMPAFTITAVLLDKL-GRKPMTIGTLWFSGFFCLLGSLVK-NNGIWKIVRMICGVMGIFGVAGTYNLL 450 (532)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~d~~-gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (532)
..........++..++.++.|+++||+ |||+.+..+.++..++.++..+.. +.. ..++..++.+++.+...+..
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 55 VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ----GFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH----HHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHhccccchhH
Confidence 345555666777888999999999999 999999999998888888777665 222 45666778888888999999
Q ss_pred hhhccccccchhhhhHHHH---HHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhh
Q 009563 451 FIYTTELFPTVVRNAALGC---ATQAAQLGAILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFY 509 (532)
Q Consensus 451 ~~~~~~~~p~~~r~~~~g~---~~~~~~~g~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532)
.+++.|.+|++.|+++.+. .+....+|..++|.+. ..++...|++.+++.+++.+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999776666 7888889999998776 245677777777776665555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 532 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 4e-13 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-09 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 68.9 bits (167), Expect = 4e-13
Identities = 51/402 (12%), Positives = 112/402 (27%), Gaps = 40/402 (9%)
Query: 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYST----Y 184
+G + + G +SD R + L ++ A F P ++
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSD-RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 119
Query: 185 VVLRMLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYI----F 240
VL L G+ G +RG + G + + + F
Sbjct: 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179
Query: 241 QTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGV 300
W A + +IL L + ++P+ LP
Sbjct: 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQS----------------------CGLPPIE 217
Query: 301 VLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVY 360
D + + ++ +++ + + ++ I + L +++ + +
Sbjct: 218 EYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 277
Query: 361 YGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGS 420
+ + Y + + + + R + + ++
Sbjct: 278 EVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 336
Query: 421 LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLGAIL 480
+ V MIC ++ F + G L+ ++ EL P A G LG +
Sbjct: 337 MNPAGNPT--VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 394
Query: 481 APFVVV------LGGWLPFAVFAACGIIGGLFAFYLPETLNK 516
A +V G F V I+ + + +
Sbjct: 395 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 56.3 bits (134), Expect = 4e-09
Identities = 37/396 (9%), Positives = 81/396 (20%), Gaps = 55/396 (13%)
Query: 129 VGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLR 188
G++ A ++ +FG LSD +LG + L + V
Sbjct: 45 TGIIFAAISLFSLLFQPLFGLLSD-KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103
Query: 189 MLTGFSTGGVGLCAFVLAT--------EPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIF 240
++ G F + S F +
Sbjct: 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163
Query: 241 QTWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGV 300
+ ++ S +++ +++ ++P V + P
Sbjct: 164 INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223
Query: 301 VLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVY 360
L L + + +
Sbjct: 224 FLSL----------------------------------------YVIGVSCTYDVFDQQF 243
Query: 361 YGISLNVVNLQTNLYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGS 420
+ + + L +G +
Sbjct: 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRI 303
Query: 421 LVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALG-CATQAAQLGAI 479
+ + + +I + +F V F Y T F C QL I
Sbjct: 304 IGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363
Query: 480 LAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYL 510
+ +G + V + L + +
Sbjct: 364 FMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 6/151 (3%)
Query: 136 FFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGFST 195
F L +R+G K +L + + +V ++F+ + V+L+ L F
Sbjct: 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV 326
Query: 196 GGVGLCAFVLATEPVGPSKRGAAGMSTFYFFSTGIA-----LLSGIAYIFQTWRALYIAS 250
+ + F T + F +A +L+G Y ++ Y+
Sbjct: 327 PFLLVGCFKYITSQFEVRFSATI-YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385
Query: 251 SIPSILFLLIILPFLPESPRWYLVRGKLNEA 281
+ ++ F LI + L L+R ++NE
Sbjct: 386 GLVALGFTLISVFTLSGPGPLSLLRRQVNEV 416
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.5 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.24 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-36 Score=301.03 Aligned_cols=392 Identities=15% Similarity=0.097 Sum_probs=279.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCceeccCCCCCCCCCcccCCCCCcceecCCCCCceeecccccchhhhHH
Q 009563 50 GPWQLRHFVLTSLAWALEAFHTMVMIFADREPEYNCLGQGCDPGEKTVCGLEPGSWAWTGGDGSSTVTQWGLFCEEKYKV 129 (532)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~ 129 (532)
++++|.++..++++++..+++....+.. . |.++ |+|+ |.+|+
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~--------~--------------------------p~~~-~~g~---s~~~~ 61 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALA--------M--------------------------PYLV-EQGF---SRGDL 61 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHH--------H--------------------------HHTT-SSTT---CSSCH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------------------------HHHH-HhCc---CHHHH
Confidence 3678999999999999999998877777 3 6554 6899 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcc----hHHHHHHHHHHHHhhccccchhhhhe
Q 009563 130 GLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSP----NYSTYVVLRMLTGFSTGGVGLCAFVL 205 (532)
Q Consensus 130 ~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~ 205 (532)
|++.+++.++++++++++|+++|| +|||+++.++.++.+++.+++++++ +++.+++.|++.|++.|...+....+
T Consensus 62 g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 140 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 140 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 999999999999999999999999 9999999999999999999998774 67889999999999999999999999
Q ss_pred eecccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHHhcccccCchhHhhcCCHHHH
Q 009563 206 ATEPVGPSKRGAAGMSTFYFFSTGIALLSGIAYIFQ----TWRALYIASSIPSILFLLIILPFLPESPRWYLVRGKLNEA 281 (532)
Q Consensus 206 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~ 281 (532)
+.|++|+++|++++++.+.+..+|..+++.+++... +||+.|++.+++.++..++.+++++|+|+........+
T Consensus 141 i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 218 (447)
T d1pw4a_ 141 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-- 218 (447)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT--
T ss_pred HHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh--
Confidence 999999999999999999999999999998877654 89999999999988888777888888775321111000
Q ss_pred HHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHHHHHHHHHHHHHHHHHH
Q 009563 282 MKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIRLFLAVTINFLCSVVYY 361 (532)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (532)
......++. .+..+++....+...+..++++..+......++..........
T Consensus 219 ------------------~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (447)
T d1pw4a_ 219 ------------------YKNDYPDDY----------NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD 270 (447)
T ss_dssp ------------------TCCC-----------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------hhhhcccch----------hhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchh
Confidence 000000000 0000011111222345667777766555555554444433333
Q ss_pred Hhhhccc-cCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHH
Q 009563 362 GISLNVV-NLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLLGSL-VKNNGIWKIVRMICG 436 (532)
Q Consensus 362 ~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 436 (532)
..+.+.. ..+.+ .........+..+++.++.+++.||++|++..........+....... ........+...+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
T d1pw4a_ 271 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 350 (447)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred hhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3344333 33322 334445566778889999999999999876544333333222222222 111111111455666
Q ss_pred HHHHHHHHhhhhhHhhhccccccchhhhhHHHHHHHHHHHH-HHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHhhc
Q 009563 437 VMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCATQAAQLG-AILAPFVV-----VLGGWLPFAVFAACGIIGGLFAFYL 510 (532)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g-~~i~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 510 (532)
++.+++.....+....+..|.+|++.|+++.|+.+...+++ .+++|.+. ..|+...+++.+++.+++.++...+
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888999999999999999999999888775 45567665 3456677777777777766665444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.3e-26 Score=222.62 Aligned_cols=356 Identities=13% Similarity=0.045 Sum_probs=236.5
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHH----HHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTY----VVLRM 189 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l----~~~r~ 189 (532)
.+.+++|+ |..++|++.+++.++..++++++|+++|| +|||++++++..+..++.++..+..+.... ++.++
T Consensus 33 ~l~~~~g~---s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T d1pv7a_ 33 WLHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI 108 (417)
T ss_dssp HHHHHHCC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHH
T ss_pred HHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 36778999 99999999999999999999999999999 999999999999999999888887766554 34445
Q ss_pred HHHhhccccchhhhheeecccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHhccc
Q 009563 190 LTGFSTGGVGLCAFVLATEPVGP--SKRGAAGMSTFYFFSTGIALLSGIAYIFQ--TWRALYIASSIPSILFLLIILPFL 265 (532)
Q Consensus 190 l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--~wr~~f~~~~~~~~~~~~~~~~~~ 265 (532)
+.+.+.+...........+..++ +++.+..+........+..+++.+++.+. +|+..+........+..++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (417)
T d1pv7a_ 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp HTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHh
Confidence 55544444444444333333332 33445566777888888889998888877 777777777777776676777788
Q ss_pred ccCchhHhhcCCHHHHHHHHHHHHHHhCCCCCccccccchhhhhhhhhcCccchhhhhhhhhccccchhhhhcChHHHHH
Q 009563 266 PESPRWYLVRGKLNEAMKIMRAIAKSNGRHLPDGVVLMLDDEQENDASNGKQNYKEELATKEAVTGSVIDVIKSPLTRIR 345 (532)
Q Consensus 266 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (532)
+|+|+.. .+.++.. ..... .......+.++.+..+..
T Consensus 189 ~~~~~~~---~~~~~~~-----------------------------~~~~~-----------~~~~~~~~~~~~~~~~~~ 225 (417)
T d1pv7a_ 189 TDAPSSA---TVANAVG-----------------------------ANHSA-----------FSLKLALELFRQPKLWFL 225 (417)
T ss_dssp CCSCSSS---CSSHHHH-----------------------------SCCCC-----------CCHHHHHHHTTSSHHHHH
T ss_pred cccccch---hhhhhhh-----------------------------hhccc-----------ccccccccccccccccch
Confidence 8776421 0000000 00000 000112223333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhh----ccccCcch---HHHHHHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 009563 346 LFLAVTINFLCSVVYYGISL----NVVNLQTN---LYLNVLVNAVAEMPAFTITAVLLDKLGRKPMTIGTLWFSGFFCLL 418 (532)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~d~~gr~~~~~~~~~~~~~~~~~ 418 (532)
.................... .......+ .........++..++..+.+++.||.++|+.+..+..+.+++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhc
Confidence 33322222222222221111 11111111 122334445667788889999999999999999999988888887
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHhhhhhHhhhccccccchhhhhHHHHHH-HHHHHHHHHHHHHH-----HhhhhhH
Q 009563 419 GSLVKNNGIWKIVRMICGVMGIFGVAGTYNLLFIYTTELFPTVVRNAALGCAT-QAAQLGAILAPFVV-----VLGGWLP 492 (532)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~i~p~~~-----~~~~~~~ 492 (532)
+.+..+.. ..++..++.+++.+...+...+++.|.+|++.|+++.|+.. ....+|..++|.+. ..|+...
T Consensus 306 ~~~~~~~~----~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~ 381 (417)
T d1pv7a_ 306 SSFATSAL----EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381 (417)
T ss_dssp HHTCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cccccccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 77654432 45667778888888999999999999999999999999865 45668888888776 4567788
Q ss_pred HHHHHHHHHHHHHHH-hhccCCCCCChhh
Q 009563 493 FAVFAACGIIGGLFA-FYLPETLNKPLYD 520 (532)
Q Consensus 493 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 520 (532)
|++.+++.++..++. +.++++++.++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 382 YLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 888888877766655 4555555555433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=8.7e-14 Score=133.64 Aligned_cols=151 Identities=15% Similarity=0.074 Sum_probs=134.2
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMNAVFGCLTAFSPNYSTYVVLRMLTGF 193 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 193 (532)
...++.+. +....+...+...++..++..+.+++.|| +|+|+.+.++.++.+++.++..+.++.+.+++..++.|+
T Consensus 249 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 324 (417)
T d1pv7a_ 249 SFFATGEQ---GTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF 324 (417)
T ss_dssp TSSSCHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cccccccc---chhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhccccccccchhhHHHHHHHH
Confidence 34445555 77888899999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hccccchhhhheeecccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcccccC
Q 009563 194 STGGVGLCAFVLATEPVGPSKRGAAGMST-FYFFSTGIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPFLPES 268 (532)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~~~es 268 (532)
+.+...+...+++.|.+|+++|++..++. +....+|..+++.+.+.+. ||+..|++.+++.++..++..+.+++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999975 5677899999999988876 999999999988888776666666654
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.5e-10 Score=112.13 Aligned_cols=148 Identities=16% Similarity=0.093 Sum_probs=114.3
Q ss_pred ceeecccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHH---HHHHHHHhh--cchHHHHHHHH
Q 009563 114 STVTQWGLFCEEKYKVGLVQALFFFGCMIGAGVFGHLSDSRLGRKGSLTVVCMMN---AVFGCLTAF--SPNYSTYVVLR 188 (532)
Q Consensus 114 ~i~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~~Grr~~l~~~~~~~---~~~~~~~~~--~~~~~~l~~~r 188 (532)
.+.+.++. +..+.++..+...++..++.++.|++.|| ++||+......... .++.++... ..+.+..++.-
T Consensus 275 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
T d1pw4a_ 275 YLKEVKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM 350 (447)
T ss_dssp HBTTBSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred hccccccc---ccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34566788 89999999999999999999999999999 89875443333322 222222222 35778888888
Q ss_pred HHHHhhccccchhhhheeecccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHhcc
Q 009563 189 MLTGFSTGGVGLCAFVLATEPVGPSKRGAAGMSTFYFFST-GIALLSGIAYIFQ---TWRALYIASSIPSILFLLIILPF 264 (532)
Q Consensus 189 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~---~wr~~f~~~~~~~~~~~~~~~~~ 264 (532)
++.|++.+...+....+..|.+|++.|+++.++.+....+ |.++++.+.+.+. ||+..|++.++..++..++..++
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888999999999999999999998877766 5667888887776 99999988877777666444444
Q ss_pred c
Q 009563 265 L 265 (532)
Q Consensus 265 ~ 265 (532)
.
T Consensus 431 ~ 431 (447)
T d1pw4a_ 431 M 431 (447)
T ss_dssp H
T ss_pred H
Confidence 3
|