Citrus Sinensis ID: 009622

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
Protein Sequence
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccEEcccccccccccccccc
Coil and Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrreDNMVEIRKNKREESLQKKRREglqnqqplandvnapgtakklenlpVMVAGVwsndsgvqyeCTTQFRKLLsiersppieevirsgvvprfVEFLLREDYPQLQFEAAWALtniasgtsehtkVVIDHGAVPIFVKLlyspsddvREQAVWALGniagdsprcrdlvlsqgglvpllaqlngqpklsmLRNATWTlsnfcrgkpqppfdqvspalpaLAHLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVfprlaeflmhpspsvlipalrtvgnivtgddmqtQCVIEYQALPCLLNLLsgnykksikkeacwtvsnitagnREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISnatsggtheQIKFLVIQGCikplcdllvcpdpriVTVCLEGLENILKVGEAeknlgntdvNVFTQMIDDAEGLEKIEslqthdnaEIYEKSVKLLETYwlddedetmppgdasqpgfgfggngnppapsggfnfs
Flexible Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrrednmveirknkreeslqkkrreglqnqqplandvnapgtakKLENLPVMVAGVWSNDSGVQYECTTQFRKLlsiersppieevirsgvVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGeaeknlgntdVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Low Complexity Region (SEG)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQpgfgfggngnppapsggfnfS
Disordered region (IsUnstruct)
***********************************************************************LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK****FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD**********************************
Disordered Region (DISOPRED)
***********************************IRKNKREESLQKKRRE***********************LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPP**********************FNF*
Disordered Region (DISEMBL)
****************KVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Disordered Region (DISPRO)
******************AVDADEGRRRREDNMVEIRKNKREESLQKK******************GTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD*********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	530	2.2.26 [Sep-21-2011]
Q9SLX0	534	Importin subunit alpha-1b	yes	no	0.992	0.985	0.787	0.0
Q96321	532	Importin subunit alpha-1	yes	no	0.996	0.992	0.786	0.0
Q71VM4	526	Importin subunit alpha-1a	no	no	0.975	0.982	0.783	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.992	0.998	0.774	0.0
O04294	531	Importin subunit alpha-2	no	no	0.979	0.977	0.690	0.0
Q76P29	516	Importin subunit alpha-B	yes	no	0.949	0.974	0.588	1e-169
O35345	536	Importin subunit alpha-7	yes	no	0.928	0.917	0.564	1e-150
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.928	0.917	0.562	1e-149
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.928	0.917	0.562	1e-148
O60684	536	Importin subunit alpha-7	yes	no	0.928	0.917	0.562	1e-148

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/536 (78%), Positives = 465/536 (86%), Gaps = 10/536 (1%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP+ +A+ RR++YKVAVDADEGRRRREDNMVEIRK++REESL KKRR+GL       
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 54  QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI 113
               PL    ++    +KLE LP MV  V S+DS VQ E TTQFRKLLSIERSPPIEEVI
Sbjct: 61  AAASPLL--AHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVI 118

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
            +GVVPRF+ FL REDYPQLQFEAAWALTNIASGTS++TKVV++ GAVPIFVKLL SPS+
Sbjct: 119 NTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSE 178

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           DVREQAVWALGN+AGDSP+CRDLVL+ GGL PLL QLN   KLSMLRNATWTLSNFCRGK
Sbjct: 179 DVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGK 238

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
           PQP F+QV PAL AL  LIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GVFPRL E 
Sbjct: 239 PQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVEL 298

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           LMHPS SVLIPALRTVGNIVTGDDMQTQCVI++QALPCLLNLL+ N+KKSIKKEACWT+S
Sbjct: 299 LMHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTIS 358

Query: 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG 413
           NITAGNREQIQAVI ANII PLV LL+ AEFDIKKEAAWAISNATSGGTH+QIK+LV QG
Sbjct: 359 NITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQG 418

Query: 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES 473
           CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG  DVN + QMIDDAEGLEKIE+
Sbjct: 419 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIEN 478

Query: 474 LQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529
           LQ+HDN EIYEK+VK+LE+YWL++ED+ MP GD +Q GF F GN  P  PSGGFNF
Sbjct: 479 LQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQNGFNF-GNQQPNVPSGGFNF 533

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/534 (78%), Positives = 469/534 (87%), Gaps = 6/534 (1%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct: 61  S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct: 240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           +QIQ V+EAN+I PLV+LL+NAEFDIKKEAAWAISNATSGG+H+QIK+LV QGCIKPLCD
Sbjct: 360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LLVCPDPRI+TVCLEGLENILKVGEAEKNLG+T D+N + Q+IDDAEGLEKIE+LQ+HDN
Sbjct: 420 LLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDN 479

Query: 480 AEIYEKSVKLLETYWLDDEDE--TMPPG-DASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++ED+    PPG D SQ GF FGGN   P PSGGFNFS
Sbjct: 480 NEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGN-QAPVPSGGFNFS 532

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/521 (78%), Positives = 458/521 (87%), Gaps = 4/521 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 61  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 120 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           +QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIK+LV +GCIKPLCD
Sbjct: 360 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480
           LL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+QMID+AEGLEKIE+LQ+HDN 
Sbjct: 420 LLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN 479

Query: 481 EIYEKSVKLLETYWLDDEDETMPPGDASQP---GFGFGGNG 518
           EIYEK+VK+LE YW+D+ED+TM     + P    F FG  G
Sbjct: 480 EIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGG 520

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/531 (77%), Positives = 461/531 (86%), Gaps = 5/531 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPNS+ ++RR++YKVAVDA+EGRRRREDNMVEIRKNKREE+L KKRREGL   Q   
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +        KKLE LP ++AGVWS+DS +Q ECTTQFRKLLSIER+PPIEEVI+SGVVPR
Sbjct: 61  STAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL R+DYPQLQFEAAWALTNIASGTSE+TKVVID+G+VPIF++LL SPSDDVREQAV
Sbjct: 121 FVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGNIAGDSP+ RDLVL  G LV LLAQ N Q KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 181 WALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
              ALP L  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL E L+H SPS
Sbjct: 241 TKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQ +I++ ALPCL+NLL+ NYKKSIKKEACWT+SNITAGNR
Sbjct: 301 VLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNR 360

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
            QIQ VIEA II PLV LL+NAEF+IKKEAAWAISNATSGG H+QIKFLV QGCIKPLCD
Sbjct: 361 NQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCD 420

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD-VNVFTQMIDDAEGLEKIESLQTHDN 479
           LLVCPDPRIVTVCLEGLENILK+GEA+K+LGNT+ VNV+ Q+ID+AEGLEKIE+LQ+HDN
Sbjct: 421 LLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDN 480

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++ED    P   ++  F FGG  +   PSGGFNFS
Sbjct: 481 TEIYEKAVKILETYWLEEED---VPVSLNEDQFEFGG-ADISLPSGGFNFS 527

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/540 (69%), Positives = 439/540 (81%), Gaps = 21/540 (3%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR           
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 54  -QNQQPLANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE 111
            Q +Q L+       +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI E
Sbjct: 61  GQTEQDLS-------SANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINE 113

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
           V++SGVVPR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S 
Sbjct: 114 VVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSA 173

Query: 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           S+DVREQAVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCR
Sbjct: 174 SEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCR 233

Query: 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291
           GKP P F+Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL 
Sbjct: 234 GKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLI 293

Query: 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351
           + L H SPSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT
Sbjct: 294 QLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWT 353

Query: 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 411
           +SNITAGN +QIQAVI+A II  LV +L++AEF++KKEAAW ISNATSGGTH+QIKF+V 
Sbjct: 354 ISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVS 413

Query: 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEK 470
           QGCIKPLCDLL CPD ++VTVCLE LENIL VGEAEKNLG+T + N++ QMID+AEGLEK
Sbjct: 414 QGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEK 473

Query: 471 IESLQTHDNAEIYEKSVKLLETYWL-DDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529
           IE+LQ+HDN +IY+K+VK+LET+W  D+E+E      A Q GF FG    PP   G FNF
Sbjct: 474 IENLQSHDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTNVPP---GQFNF 530

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  593 bits (1530), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 305/518 (58%), Positives = 382/518 (73%), Gaps = 15/518 (2%)

Query: 7   SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAP 66
           SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D    
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVD---S 60

Query: 67  GTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL 126
              ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+FL 
Sbjct: 61  LINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLY 120

Query: 127 REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
            +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALGNI
Sbjct: 121 MQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNI 180

Query: 187 AGDSPRCRDLVLSQGGLVPLLAQLN--GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           AGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V  +
Sbjct: 181 AGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRAS 240

Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V  P
Sbjct: 241 LPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTP 300

Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           ALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ QIQ
Sbjct: 301 ALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQIQ 359

Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424
            VI+ANII  LV LL NAEF+I+KEAAWAISNATS GT +QI FLV QGC+KPLCDLL  
Sbjct: 360 QVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKV 419

Query: 425 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE 484
            DPRI+ V LEG+ENIL  G+ E  +  T VN + ++I+DA+GL KI  LQ H N + +E
Sbjct: 420 SDPRIINVALEGIENILVAGKKEAQV--TGVNPYKKIIEDADGLGKIYDLQHHMNKDTFE 477

Query: 485 KSVKLLETYWLD---DEDETMPPGDASQPGFGFGGNGN 519
           K  +++ TY  D   DE + MP G +    F F    N
Sbjct: 478 KVSRIISTYLEDEQEDEGDLMPEGSS----FSFSNQTN 511

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  531 bits (1368), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 285/505 (56%), Positives = 357/505 (70%), Gaps = 13/505 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446
           +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPPG 505
           E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P 
Sbjct: 455 ESKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQ 514

Query: 506 -DASQPGFGFGGNGNPPAPSGGFNF 529
            D +Q  F F     P AP  GF  
Sbjct: 515 VDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 284/505 (56%), Positives = 356/505 (70%), Gaps = 13/505 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+D  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446
           +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPPG 505
           E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P 
Sbjct: 455 EGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQ 514

Query: 506 -DASQPGFGFGGNGNPPAPSGGFNF 529
            D +Q  F F     P AP  GF  
Sbjct: 515 VDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  525 bits (1353), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/505 (56%), Positives = 355/505 (70%), Gaps = 13/505 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446
           +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPPG 505
           E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P 
Sbjct: 455 EGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQ 514

Query: 506 -DASQPGFGFGGNGNPPAPSGGFNF 529
            D +Q  F F     P AP  GF  
Sbjct: 515 VDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  525 bits (1353), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/505 (56%), Positives = 355/505 (70%), Gaps = 13/505 (2%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI 386
            ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQAVI+ANI   L+ +L+ AEF  
Sbjct: 336 SALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA 446
           +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L GLENIL++GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW-LDDEDETMPPG 505
           E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ ++D+D ++ P 
Sbjct: 455 EGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQ 514

Query: 506 -DASQPGFGFGGNGNPPAPSGGFNF 529
            D +Q  F F     P AP  GF  
Sbjct: 515 VDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
255542844	531	importin alpha, putative [Ricinus commun	0.998	0.996	0.836	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.998	0.994	0.825	0.0
224122988	529	predicted protein [Populus trichocarpa]	0.996	0.998	0.826	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.998	0.994	0.825	0.0
224123916	529	predicted protein [Populus trichocarpa]	0.994	0.996	0.826	0.0
225450645	527	PREDICTED: importin subunit alpha-1 isof	0.992	0.998	0.824	0.0
359487526	528	PREDICTED: importin subunit alpha-1 isof	0.992	0.996	0.823	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.998	0.998	0.822	0.0
357441839	533	Importin subunit alpha-1 [Medicago trunc	0.998	0.992	0.818	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.998	0.996	0.821	0.0

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/532 (83%), Positives = 489/532 (91%), Gaps = 3/532 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  QP+ 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQPMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS+DS +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAVEKKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+T+VVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQAVIEANIIGPLV LLENAEFDIKKEAAWAISNATSGGTH+QIK+LV QGCIKPLCD
Sbjct: 360 EQIQAVIEANIIGPLVHLLENAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD--VNVFTQMIDDAEGLEKIESLQTHD 478
           LL+CPDPRIVTVCLEGLENILKVGEA+KNLGN D  VN++ QMIDDAEGLEKIE+LQ+HD
Sbjct: 420 LLICPDPRIVTVCLEGLENILKVGEADKNLGNNDGGVNLYAQMIDDAEGLEKIENLQSHD 479

Query: 479 NAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           N EIYEK+VK+LETYWL++EDETMPPGDASQ GF FGG+  P  PSGGFNFS
Sbjct: 480 NIEIYEKAVKILETYWLEEEDETMPPGDASQSGFQFGGSDMPTIPSGGFNFS 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/533 (82%), Positives = 485/533 (90%), Gaps = 4/533 (0%)

Query: 1   MSLRP--NSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RP  NS+ + RRN+YKVAVDA+EGRRRRED MVEIRKN+REESLQKKRREGLQ QQ 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           +   V++    KKLE+LP MV GVW++D+ +Q E TTQFRKLLSIERSPPIEEVI++GVV
Sbjct: 60  MPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDDMQTQ +I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
           N++QIQAVIEAN+I PLV LL+NAEFDIKKEAAWAISNATSGG+HEQIKFLV QGCIKPL
Sbjct: 360 NKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPL 419

Query: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTH 477
           CDLL+CPDPRIVTVCLEGLENILKVGEA+KN+GNT DVN++ QMID+AEGLEKIE+LQ+H
Sbjct: 420 CDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSH 479

Query: 478 DNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           DN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FG +  P  PSGGFNF+
Sbjct: 480 DNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSDAPTVPSGGFNFN 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122988|ref|XP_002318966.1| predicted protein [Populus trichocarpa] gi|222857342|gb|EEE94889.1| predicted protein [Populus trichocarpa]

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/531 (82%), Positives = 483/531 (90%), Gaps = 3/531 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVW+ D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAAEKKLEHLPSMVAGVWTEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGNGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHS+D+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSDDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLANNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQAVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG HEQIK+LV QGCIKPLCD
Sbjct: 360 EQIQAVIEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGAHEQIKYLVSQGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LL+CPDPRIVTVCLEGLENILKVGEA+KN+  T  VN++ QMIDDAEGLEKIE+LQ+HDN
Sbjct: 420 LLICPDPRIVTVCLEGLENILKVGEADKNVSETGGVNLYAQMIDDAEGLEKIENLQSHDN 479

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++EDETMPPGDASQ GF FGG   P  PSGGFNFS
Sbjct: 480 TEIYEKAVKILETYWLEEEDETMPPGDASQSGFQFGGEA-PAVPSGGFNFS 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/533 (82%), Positives = 484/533 (90%), Gaps = 4/533 (0%)

Query: 1   MSLRP--NSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RP  NS+ + RRN+YKVAVDADEGRRRRED MVEIRKN+REESLQKKRREG Q QQ 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGFQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           +   V++    KKLE+LP MV GVW++D+ +Q E TTQFRKLLSIERSPPIEEVI++GVV
Sbjct: 60  IPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDDMQTQ +I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
           N++QIQAVIEAN+I PLV LL+NAEFDIKKEAAWAISNATSGG+HEQIKFLV QGCIKPL
Sbjct: 360 NKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPL 419

Query: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTH 477
           CDLL+CPDPRIVTVCLEGLENILKVGEA+KN+GNT DVN++ QMID+AEGLEKIE+LQ+H
Sbjct: 420 CDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSH 479

Query: 478 DNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           DN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FG +  P  PSGGFNF+
Sbjct: 480 DNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSDAPAVPSGGFNFN 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa]

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/530 (82%), Positives = 486/530 (91%), Gaps = 3/530 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDADEGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAIP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  AALHSSAAEKKLEHLPSMVAGVWSEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +Q+LPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQAVIEAN+IGPLV LL+NAEFDIKKE+AWAISNATSGGTHEQIK+LV QGCIKPLCD
Sbjct: 360 EQIQAVIEANLIGPLVHLLQNAEFDIKKESAWAISNATSGGTHEQIKYLVSQGCIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LL+CPDPRIVTVCLEGLENILKVGEA+KN+ +T  VN++ QMIDDAEGLEKIE+LQ+HDN
Sbjct: 420 LLICPDPRIVTVCLEGLENILKVGEADKNVSDTGGVNLYAQMIDDAEGLEKIENLQSHDN 479

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529
           +EIYEK+VK+LETYWL+++DETMPPGDASQ GF FGG+  P  PSGGFNF
Sbjct: 480 SEIYEKAVKILETYWLEEDDETMPPGDASQSGFQFGGDA-PAVPSGGFNF 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450645|ref|XP_002282816.1| PREDICTED: importin subunit alpha-1 isoform 1 [Vitis vinifera] gi|296089748|emb|CBI39567.3| unnamed protein product [Vitis vinifera]

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/531 (82%), Positives = 483/531 (90%), Gaps = 5/531 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKV+VDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q L 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQTLP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE LP MVAGVW++DS +Q E TTQFRKLLSIER PPIEEVI+SGVVPR
Sbjct: 60  ASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTS++TKVVIDHGAVP+FVKLL SPSDDVREQAV
Sbjct: 120 FVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPAL  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQAVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK+LV Q  IKPLCD
Sbjct: 360 EQIQAVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQASIKPLCD 419

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LLVCPDPRIVTVCLEGLENILKVGEAEKNLG+T +VN++ QMIDDAEGLEKIE+LQ+HDN
Sbjct: 420 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGSTREVNLYAQMIDDAEGLEKIENLQSHDN 479

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++EDETMPPGD+SQPGF F   G  P P+GGFNFS
Sbjct: 480 TEIYEKAVKILETYWLEEEDETMPPGDSSQPGFRF---GEVPVPTGGFNFS 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487526|ref|XP_003633608.1| PREDICTED: importin subunit alpha-1 isoform 2 [Vitis vinifera]

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/532 (82%), Positives = 483/532 (90%), Gaps = 6/532 (1%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKV+VDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q L 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQTLP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE LP MVAGVW++DS +Q E TTQFRKLLSIER PPIEEVI+SGVVPR
Sbjct: 60  ASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTS++TKVVIDHGAVP+FVKLL SPSDDVREQAV
Sbjct: 120 FVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 -VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
              PALPAL  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSP
Sbjct: 240 QTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 299

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
           SVLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ N+KKSIKKEACWT+SNITAGN
Sbjct: 300 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGN 359

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
           +EQIQAVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK+LV Q  IKPLC
Sbjct: 360 KEQIQAVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQASIKPLC 419

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHD 478
           DLLVCPDPRIVTVCLEGLENILKVGEAEKNLG+T +VN++ QMIDDAEGLEKIE+LQ+HD
Sbjct: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGSTREVNLYAQMIDDAEGLEKIENLQSHD 479

Query: 479 NAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           N EIYEK+VK+LETYWL++EDETMPPGD+SQPGF F   G  P P+GGFNFS
Sbjct: 480 NTEIYEKAVKILETYWLEEEDETMPPGDSSQPGFRF---GEVPVPTGGFNFS 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/531 (82%), Positives = 478/531 (90%), Gaps = 2/531 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN++ + RRN+YKVAVDADEGRRRREDNMVEIRK+KREESL KKRREGLQ QQ   
Sbjct: 1   MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +      KKLE+LP MVAGVWS+D+ +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 61  APLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 121 FVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVLSQG LVPLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF+Q
Sbjct: 181 WALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  L+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL + L+HPSPS
Sbjct: 241 VRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I + ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 301 VLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 360

Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           EQIQ VIEA ++ PLV LL+NAEFDIKKEAAWAISNATSGG HEQIK+LV QGCIKPLCD
Sbjct: 361 EQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVSQGCIKPLCD 420

Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
           LLVCPDPRIVTVCLEGLENILKVGEAEK+LGNT DVN + QMIDDAEGLEKIE+LQ+HDN
Sbjct: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNEYAQMIDDAEGLEKIENLQSHDN 480

Query: 480 AEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
            EIYEK+VK+LETYWL++EDET+P GD +QPGF F GN   P PSGGFNFS
Sbjct: 481 NEIYEKAVKILETYWLEEEDETLPSGDGAQPGFNF-GNNELPVPSGGFNFS 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441839|ref|XP_003591197.1| Importin subunit alpha-1 [Medicago truncatula] gi|355480245|gb|AES61448.1| Importin subunit alpha-1 [Medicago truncatula]

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/533 (81%), Positives = 482/533 (90%), Gaps = 4/533 (0%)

Query: 1   MSLRPN--SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RPN  S+ + RRN+YKVAVDA+EGRRRRED MVEIRKN+REESL KKRREGLQ QQ 
Sbjct: 1   MSYRPNANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           + + +++    KKLE+LP MVAGVWS+D+ +Q E TTQFRKLLSIER+PPIEEVI++GVV
Sbjct: 60  IPSALHSNVVEKKLEHLPTMVAGVWSDDNNLQLESTTQFRKLLSIERTPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVL  G LVPLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLGHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDD+QTQ +I +QALPCL NLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDLQTQVIINHQALPCLYNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
           N++QIQAVIEANI GPLV+LL+NAEFDIKKEAAWAISNATSGG+HEQIK+LV QGCIKPL
Sbjct: 360 NKQQIQAVIEANIFGPLVSLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPL 419

Query: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTH 477
           CDLL+CPDPRIVTVCLEGLENILKVGEA+KN+GN  DVN++ QMIDDAEGLEKIE+LQ+H
Sbjct: 420 CDLLICPDPRIVTVCLEGLENILKVGEADKNIGNNGDVNLYAQMIDDAEGLEKIENLQSH 479

Query: 478 DNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           DN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FG    P  PSGGFNF+
Sbjct: 480 DNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSAEVPSVPSGGFNFN 532

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/532 (82%), Positives = 481/532 (90%), Gaps = 3/532 (0%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN++ + RRN+YKVAVDADEGRRRREDNMVEIRK+KREESLQKKRREGLQ QQ   
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFP 60

Query: 61  NDVNAPGTA-KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP 119
             + A     KKLE+LP MVAGVWS+D+  Q E TTQFRKLLSIERSPPIEEVI++GVVP
Sbjct: 61  TPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVP 120

Query: 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQA 179
           RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 121 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQA 180

Query: 180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239
           VWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 181 VWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 240

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
           QV  ALPAL  L+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL + L+HPSP
Sbjct: 241 QVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSP 300

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
           SVLIPALRTVGNIVTGDDMQTQ +I + ALPCLL+LL+ N+KKSIKKEACWT+SNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 360

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
           R+QIQAVIEA +I PLV LL+NAEFDIKKEAAWAISNATSGGTHEQIK+LV QGCIKPLC
Sbjct: 361 RDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLC 420

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHD 478
           DLLVCPDPRIVTVCLEGLENILKVGEAEK+LGNT DVN++ QMID+AEGLEKIE+LQ+HD
Sbjct: 421 DLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDEAEGLEKIENLQSHD 480

Query: 479 NAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS 530
           N EIYEK+VK+LETYWL+D+DET+P GD +QPGF F GN + P PSGGFNFS
Sbjct: 481 NNEIYEKAVKILETYWLEDDDETLPAGDGAQPGFNF-GNNDLPVPSGGFNFS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	530
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.958	0.949	0.803	4.4e-219
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.958	0.954	0.793	2.2e-217
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.943	0.929	0.735	1.2e-198
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.943	0.941	0.709	8.3e-193
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.960	0.944	0.704	6.7e-191
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.928	0.947	0.628	2.4e-163
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.9	0.903	0.626	6.5e-154
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.930	0.955	0.596	6.7e-152
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.920	0.885	0.600	6.9e-150
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.933	0.895	0.598	7.1e-148

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2116 (749.9 bits), Expect = 4.4e-219, P = 4.4e-219
 Identities = 412/513 (80%), Positives = 457/513 (89%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ-NQQP- 58
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESLQKKRREGLQ NQ P 
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    59 -LANDVNAPGTA-KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
                + V A  T  KKLE+LP MV GVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +G
Sbjct:    61 FAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAG 120

Query:   117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
             VVPRFVEFL REDYPQLQFEAAWALTNIASGTSE+TKVVI+HGAVPIFV+LL S SDDVR
Sbjct:   121 VVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVR 180

Query:   177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
             EQAVWALGN+AGDSPRCRDLVL QG L+PLL+QLN   KLSMLRNATWTLSNFCRGKPQP
Sbjct:   181 EQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQP 240

Query:   237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             PFDQV PALPAL  LIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRL E L H
Sbjct:   241 PFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
              SPSVLIPALR++GNIVTGDD+QTQCVI + AL  LL+LL+ N+KKSIKKEACWT+SNIT
Sbjct:   301 QSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 416
             AGNR+QIQAV EA +I PLV LL+NAEFDIKKEAAWAISNATSGG+ +QIK++V QG +K
Sbjct:   361 AGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVK 420

Query:   417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQ 475
             PLCDLLVCPDPRI+TVCLEGLENILKVGEAEK  GNT DVN + Q+IDDAEGLEKIE+LQ
Sbjct:   421 PLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQLIDDAEGLEKIENLQ 480

Query:   476 THDNAEIYEKSVKLLETYWLDDEDETMPPGDAS 508
             +HDN+EIYEK+VK+LETYWL++EDET+PPGD S
Sbjct:   481 SHDNSEIYEKAVKILETYWLEEEDETLPPGDPS 513

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2100 (744.3 bits), Expect = 2.2e-217, P = 2.2e-217
 Identities = 407/513 (79%), Positives = 455/513 (88%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query:    61 NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct:    61 S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query:   121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
             FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct:   120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query:   181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
             WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct:   180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query:   241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct:   240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query:   301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
             VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct:   300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query:   361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
             +QIQ V+EAN+I PLV+LL+NAEFDIKKEAAWAISNATSGG+H+QIK+LV QGCIKPLCD
Sbjct:   360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCD 419

Query:   421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTHDN 479
             LLVCPDPRI+TVCLEGLENILKVGEAEKNLG+T D+N + Q+IDDAEGLEKIE+LQ+HDN
Sbjct:   420 LLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDN 479

Query:   480 AEIYEKSVKLLETYWLDDED-ETM-PPG-DASQ 509
              EIYEK+VK+LETYWL++ED ET  PPG D SQ
Sbjct:   480 NEIYEKAVKILETYWLEEEDDETQQPPGVDGSQ 512

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1923 (682.0 bits), Expect = 1.2e-198, P = 1.2e-198
 Identities = 373/507 (73%), Positives = 434/507 (85%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG--LQNQQP 58
             MSLRP+++A+ R+  YK  VDADE RRRREDN+VEIRKNKRE+SL KKRREG  LQ Q P
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    59 LANDVNAPGTA----KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR 114
             L   ++ P TA    K+LE +P+MV GV+S+D   Q E TTQFRKLLSIERSPPI+EVI+
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
             +GV+PRFVEFL R D+PQLQFEAAWALTN+ASGTS+HT+VVI+ GAVPIFVKLL S SDD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
             VREQAVWALGN+AGDSP CR+LVL+ G L PLLAQLN   KLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
               PF+QV PALP L  LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGV PRL E L
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
              H SP+VLIPALRTVGNIVTGDD QTQ +IE   LP L NLL+ N+KKSIKKEACWT+SN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC 414
             ITAGN+ QI+AV+ A II PLV LL+NAEFDIKKEAAWAISNATSGG+HEQI++LV QGC
Sbjct:   361 ITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGC 420

Query:   415 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG-NTDVNVFTQMIDDAEGLEKIES 473
             IKPLCDLL+CPDPRIVTVCLEGLENILKVGEA+K +G N+ VN++ Q+I++++GL+K+E+
Sbjct:   421 IKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVEN 480

Query:   474 LQTHDNAEIYEKSVKLLETYWLDDEDE 500
             LQ+HDN EIYEK+VK+LE YW ++E+E
Sbjct:   481 LQSHDNNEIYEKAVKILERYWAEEEEE 507

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
 Identities = 357/503 (70%), Positives = 422/503 (83%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR-REGLQNQQPL 59
             MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR    +      
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    60 ANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
                     +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI EV++SGVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S S+DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             AVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCRGKP P F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL + L H S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             PSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT+SNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
             N +QIQAVI+A II  LV +L++AEF++KKEAAW ISNATSGGTH+QIKF+V QGCIKPL
Sbjct:   361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPL 420

Query:   419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQTH 477
             CDLL CPD ++VTVCLE LENIL VGEAEKNLG+T + N++ QMID+AEGLEKIE+LQ+H
Sbjct:   421 CDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSH 480

Query:   478 DNAEIYEKSVKLLETYWLDDEDE 500
             DN +IY+K+VK+LET+W +D +E
Sbjct:   481 DNNDIYDKAVKILETFWTEDNEE 503

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1850 (656.3 bits), Expect = 6.7e-191, P = 6.7e-191
 Identities = 363/515 (70%), Positives = 424/515 (82%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQ---Q 57
             MS +P++K + RRN+YKV+VDADEGRRRREDNMVEIRKNKREE+LQKKRREG       Q
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    58 PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             P  +  ++  T  +LEN+  M+AGV S D  +Q E T  FR+LLSIER+PPI EV++SGV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
             VP  V+FL R+D+ QLQFEAAWALTNIASGTSE+T+V+ID GAVP+FVKLL S S++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
             QAVWALGN+AGDSP+CRD VLS   ++ LLAQ +   KLSMLRNATWTLSNFCRGKPQP 
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   238 FDQ-VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             F+Q    ALPAL  L+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRL + L H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
             PSPSVLIPALRT+GNIVTGDD+QTQ VI  QALP LLNLL   YKKSIKKEACWT+SNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 416
             AGN  QIQ V +A II PL+ LLE  EF+IKKEA WAISNATSGG H+QIKFLV QGCI+
Sbjct:   361 AGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIR 420

Query:   417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGLEKIESLQ 475
             PLCDLL CPDPR+VTV LEGLENILKVGEAEKNLGNT + N++ QMI+DA+GL+KIE+LQ
Sbjct:   421 PLCDLLPCPDPRVVTVTLEGLENILKVGEAEKNLGNTGNDNLYAQMIEDADGLDKIENLQ 480

Query:   476 THDNAEIYEKSVKLLETYWL-DDEDETMPPGDASQ 509
             +HDN EIYEK+VK+LE+YW  DDE+E +   DA +
Sbjct:   481 SHDNNEIYEKAVKILESYWAADDEEEDIGGVDAPE 515

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1590 (564.8 bits), Expect = 2.4e-163, P = 2.4e-163
 Identities = 315/501 (62%), Positives = 389/501 (77%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL--QNQQP 58
             MSLRP++K + RR +YKV+VDA+EGRRRRED +VEIRK+KR E+L KKRR  +   + + 
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVLPPDYKL 60

Query:    59 LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
             ++ND   P   + L  +  M+ GV+S+D  +Q E TT+FR +LS +RSPP + VI+SGVV
Sbjct:    61 ISND---P--FESLLEIANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVV 115

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PRFVEFL ++D P+LQFEAAWALTNIASG SEHTKVVIDHG VP+FV+LL SP DDVREQ
Sbjct:   116 PRFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQ 175

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             A+W LGN+AGDS +CRD VL+ G  +PLL QLN    LS+LRNATWTLSNF RGKP PPF
Sbjct:   176 AIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPF 235

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             D V   LP L  L++S+D++VL DACWALS LSD +N+ IQ+VIEAGV PRL E L H S
Sbjct:   236 DLVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHAS 295

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             P VL+PALR +GNIV+G+  QT CVI    LP L +LL+ N+ + I++EACWT+SNITAG
Sbjct:   296 PVVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAG 355

Query:   359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
               EQIQ+VI+AN+I  LV L ++AEFDIKKEA WAISNA+ GG+  QIK+LV Q CIK L
Sbjct:   356 LEEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKAL 415

Query:   419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD 478
             CD+LVCPD RI+ V L GLE IL  GE +KNL   DVN ++QMI+DAEGLEKIE+LQ H 
Sbjct:   416 CDILVCPDLRIILVSLGGLEMILIAGEVDKNL--RDVNCYSQMIEDAEGLEKIENLQHHG 473

Query:   479 NAEIYEKSVKLLETYWLDDED 499
             N EIYEK+VK+L+TY L +ED
Sbjct:   474 NNEIYEKAVKILQTYGLVEED 494

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1501 (533.4 bits), Expect = 6.5e-154, P = 6.5e-154
 Identities = 312/498 (62%), Positives = 376/498 (75%)

Query:    12 RRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKK 71
             RR+ YK  VD   GRRRRED+MVEIRK KREESL KKRRE L +  P A+ ++     +K
Sbjct:    10 RRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALPHS-PSADSLD-----QK 63

Query:    72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDY 130
             L      ++ +WS++  +  E TTQ R LL  E  +  +EEVI++G+VPRFVEFL  +D 
Sbjct:    64 L------ISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDS 117

Query:   131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             PQLQFEAAWALTNIASGTSE+T+VVIDHGAV I V+LL SP D VREQ VWALGNI+GDS
Sbjct:   118 PQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDS 177

Query:   191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             PRCRD+VL    L  LL QLN   KLSML NA WTLSN CRGKPQPPFDQVS ALPALA 
Sbjct:   178 PRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQ 237

Query:   251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
             LI  +D E+L   CWAL YLSDG+N+KIQAVIEA V  RL    +H SPSV+ PALRT+G
Sbjct:   238 LIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIG 297

Query:   311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
             NIVTG+D QTQ +I+ QALPCL+NLL G+Y K+I+KEACWTVSNITAG + QIQAV +A+
Sbjct:   298 NIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDAD 357

Query:   371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430
             I   LV LL+N+E D+KKEAAWAI NA +GG+++QI FLV Q CIKPLCDLL C D ++V
Sbjct:   358 ICPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLV 417

Query:   431 TVCLEGLENILKVGE------AEK--NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI 482
              VCLE L+ ILKVGE      AE       T+VN   Q+I++AEGLEKIE LQ+H+N +I
Sbjct:   418 MVCLEALKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDI 477

Query:   483 YEKSVKLLETYWLDDEDE 500
             YE +VK+LETYW+++E+E
Sbjct:   478 YETAVKILETYWMEEEEE 495

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
 Identities = 303/508 (59%), Positives = 381/508 (75%)

Query:     7 SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND--VN 64
             SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D  +N
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN 63

Query:    65 APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
                  ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct:    64 -----QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query:   125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
             L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALG
Sbjct:   119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query:   185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQVS 242
             NIAGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V 
Sbjct:   179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query:   243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
              +LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V 
Sbjct:   239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query:   303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
              PALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ Q
Sbjct:   299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQ 357

Query:   363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 422
             IQ VI+ANII  LV LL NAEF+I+KEAAWAISNATS GT +QI FLV QGC+KPLCDLL
Sbjct:   358 IQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLL 417

Query:   423 VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI 482
                DPRI+ V LEG+ENIL  G+ E  +  T VN + ++I+DA+GL KI  LQ H N + 
Sbjct:   418 KVSDPRIINVALEGIENILVAGKKEAQV--TGVNPYKKIIEDADGLGKIYDLQHHMNKDT 475

Query:   483 YEKSVKLLETYWLD---DEDETMPPGDA 507
             +EK  +++ TY  D   DE + MP G +
Sbjct:   476 FEKVSRIISTYLEDEQEDEGDLMPEGSS 503

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1463 (520.1 bits), Expect = 6.9e-150, P = 6.9e-150
 Identities = 304/506 (60%), Positives = 370/506 (73%)

Query:    10 DSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAN------ 61
             + RR ++K       +E RRRRE+  VEIRK KREE+L K+R  G    +P A+      
Sbjct:     8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67

Query:    62 --DVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP 119
               D  AP  ++  E+LP MV GV+S     Q + TT+FRKLLS ER+PPIEEVI++GVV 
Sbjct:    68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127

Query:   120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQA 179
             RFVEFL R  +  +QFEAAWALTNIASG++  T+VVI+ GAVPIFV+LL SP  DVREQA
Sbjct:   128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186

Query:   180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF 238
             VWALGNIAGDSP+CRD VLS G L PLL  L    KLSMLRNATWTLSNFCRGK PQP +
Sbjct:   187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
               ++PALP LA L++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RL E LMH S
Sbjct:   247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              SV  PALR+VGNIVTGDD+QTQ +I   ALPCLL+LL  N K  I+KEACWT+SNITAG
Sbjct:   307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAG 365

Query:   359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIK 416
             N  QIQ+V++ANII PL+ LL N +   +KEA WAISNATSGG    +QI++LV QGCIK
Sbjct:   366 NSAQIQSVVDANIIPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIK 425

Query:   417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL---GNTDVNVFTQMIDDAEGLEKIES 473
             PLCDLL CPD +I+ V L+GLENILKVG+ +K     G   +N +   I++  G+EKI  
Sbjct:   426 PLCDLLSCPDNKIIQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHE 485

Query:   474 LQTHDNAEIYEKSVKLLETYWLDDED 499
              QT+ N EIY K+  ++E Y+ DD++
Sbjct:   486 CQTNANEEIYMKAFNIIEKYFSDDDE 511

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1444 (513.4 bits), Expect = 7.1e-148, P = 7.1e-148
 Identities = 309/516 (59%), Positives = 371/516 (71%)

Query:    10 DSRRNKYKVAVD--ADEGRRRREDNMVEIRKNKREESLQKKR----REG---LQNQQPLA 60
             + RR +YK       DE RRRRE+  VEIRK KREE+L K+R    R+G   +      A
Sbjct:     8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67

Query:    61 -NDVNAPGTAKKLE-NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
              +D  A     +L   LP MV GV+S+    Q + TT+FRKLLS ER+PPIE VI +GVV
Sbjct:    68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              RFVEFL R  +  +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV+LL SP  DVREQ
Sbjct:   128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237
             AVWALGNIAGDSP+CRD VL+ G L PLL  +N   K+SMLRNATWTLSNFCRGK PQP 
Sbjct:   187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246

Query:   238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
             ++ ++PALP LA LI+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RL E LMH 
Sbjct:   247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306

Query:   298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
             S SV  PALR+VGNIVTGDD+QTQ +I   ALP LL+LLS   K  I+KEACWT+SNITA
Sbjct:   307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITA 365

Query:   358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCI 415
             GN  QIQ+VI+A II PLV LL N +F  +KEA WAISNATSGG    +QI++LV QGCI
Sbjct:   366 GNSSQIQSVIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCI 425

Query:   416 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD--VNVFTQMIDDAEGLEKIES 473
             KPLCDLL CPD +I+ V L+GLENILKVGE +K  G  D  VN +   I++A G+EKI  
Sbjct:   426 KPLCDLLACPDNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHD 485

Query:   474 LQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQ 509
              Q + N EIY K+  ++E Y+  DEDE    GD  +
Sbjct:   486 CQNNANEEIYMKAYNIIEKYF-SDEDEAA--GDIDE 518

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5643	0.9283	0.9179	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4397	0.9603	0.9902	yes	no
O14063	IMA1_SCHPO	No assigned EC number	0.5093	0.9679	0.9464	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5623	0.9283	0.9179	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5277	0.9716	0.9501	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7865	0.9962	0.9924	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5888	0.9490	0.9748	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7740	0.9924	0.9981	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5623	0.9283	0.9179	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5623	0.9283	0.9179	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7831	0.9754	0.9828	no	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.7873	0.9924	0.9850	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIII0659 hypothetical protein (529 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	530
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.0
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-36
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-32
pfam01749	97	pfam01749, IBB, Importin beta binding domain	8e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-21
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-11
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-11
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-10
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	1e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-08
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	7e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	4e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	8e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-05
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	5e-04
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.001
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.003
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.003

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  586 bits (1512), Expect = 0.0
 Identities = 279/533 (52%), Positives = 351/533 (65%), Gaps = 12/533 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
            + R   +A     K K    ADE RRRRE+  VE+RK KREE L K+R   L +    A
Sbjct: 1   STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRR--NLADVSEEA 58

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
                P   +    LP +   ++S+D   Q +   +FRKLLS E SPPI+ VI +GVVPR
Sbjct: 59  ESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPR 118

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEF+       LQFEAAWALTNIASGT++ TKVV+D GAVP+F++LL S  DDVREQAV
Sbjct: 119 FVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAV 178

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK-PQPPF 238
           WALGNIAGDS  CRD VL  G L PLL  L      +SMLRNATWTLSN CRGK P P +
Sbjct: 179 WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +S ALP LA LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RL E L H S
Sbjct: 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES 298

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             +  PALR+VGNIVTG D QTQ +I   AL    +LLS + K++I+KEACWT+SNITAG
Sbjct: 299 AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAG 357

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIK 416
           N EQIQAVI+AN+I PL+ LL +AE+ IKKEA WAISNATSGG +  + I++LV QG IK
Sbjct: 358 NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIK 417

Query: 417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476
           PLCDLL   D +I+ V L+ +ENILKVGE ++     ++N++   ++ A G++ I  LQ 
Sbjct: 418 PLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQD 477

Query: 477 HDNAEIYEKSVKLLETYWLD-DEDETMPPGDASQPGFGFGGNGNPPAPSGGFN 528
             N  IY+K+  ++E ++ + D  + + P  A    F FG N       G FN
Sbjct: 478 SVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN-TFTFGSN---VNQQGNFN 526

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  131 bits (331), Expect = 2e-36
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           E VI++G +P  V  LL      +Q EAAWAL+N+++G +++ + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVS-LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           S  ++V + A+WAL N+A      + +VL  GG VP L  L       + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 230 CR 231
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  118 bits (298), Expect = 7e-32
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           +  LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P L + L      V
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  AL  + N+  G +     V+E   +P L+NLL  +  + I+K A   +SN+ +
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  114 bits (288), Expect = 8e-31
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 4  RPNSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND 62
             +K + RR  YK    DA+E RRRRE+  VE+RKNKREE L K+R  GL  +     +
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60

Query: 63 VNAPGTA---KKLENLPVMVAGVWSNDSGVQYECTTQ 96
              G++   +    LPVMV GV S+D   Q   T  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 90.5 bits (225), Expect = 9e-22
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 12/131 (9%)

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           +AVI+A  +  LV+LL +++ ++++EAAWA+SN ++G  ++ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483
             D  +V   L  L N+    E  K            ++ +A G+ K+ +L    N +I 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNK-----------LIVLEAGGVPKLVNLLDSSNEDIQ 108

Query: 484 EKSVKLLETYW 494
           + +   L    
Sbjct: 109 KNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
           S+D  VQ E       L S   +  I+ V+ +G +P  V+ L  ED  ++   A WAL N
Sbjct: 18  SSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRN 75

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           +A+G  ++  +V++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 76  LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.5 bits (220), Expect = 4e-21
 Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
           VI+   LP L++LLS +  +++++EA W +SN++AGN + IQAV+EA  +  LV LL++ 
Sbjct: 3   VIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 383 EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
           + ++ K A WA+ N  +G   +    ++  G +  L +LL   +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           + E+ + VI+ GAVP  V+LL SP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 57.8 bits (141), Expect = 3e-11
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
             E+ + V+D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.8 bits (133), Expect = 4e-10
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399
           + E  QAVIEA  + PLV LL + + ++++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
            +++  AA AL  +A G  E  +  +    +P  + LL    D+VRE A WALG I
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 106 SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
               + VI +G VP  V+ LL     ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQ-LLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.0 bits (118), Expect = 5e-08
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 105 RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
                + V+ +G +P  VE LL+ +  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.8 bits (115), Expect = 9e-08
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399
           + E  QAV++A  +  LV LL++ + ++ KEAAWA+SN +S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +   +E LL +  P+++  AA AL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 178 QAVWALGNIAGDS 190
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
           + +  QAVIEAG  P L + L  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
                Q VIE  A+P L+ LLS    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           + A+P L  L+ S D+EV  +A WALS L+ 
Sbjct: 11  AGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
            ++  QAV++AG  P L E L      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSD 272
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 402 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
             E  + +V  G +  L +LL   D  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           DD   Q V++   LP L+ LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           VRE A  ALG +AG  P      + +  L+P L  L       +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.7 bits (94), Expect = 8e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 402 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
           + E  + ++  G + PL  LL  PD  +       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           SP  +  V+  G + PL+  L+  P   +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLS-SPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 52/252 (20%), Positives = 85/252 (33%), Gaps = 49/252 (19%)

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
            +  LL ++   ++  AA AL  + S             AVP+  +LL      VR+ A 
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAA 95

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
            ALG +    P           + PL+  L       +   A   L      +       
Sbjct: 96  DALGEL--GDPEA---------VPPLVELLENDENEGVRAAAARAL-GKLGDE-----RA 138

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---FPRLAEFLMHP 297
           + P L AL      +    L  A   +   +       +A+ E G     P L E L   
Sbjct: 139 LDPLLEALQDEDSGSAAAALDAALLDVRAAA------AEALGELGDPEAIPLLIELLEDE 192

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G +  G +         +A   L+  LS +    ++K A   +  I  
Sbjct: 193 DADVRRAAASALGQL--GSEN-------VEAADLLVKALS-DESLEVRKAALLALGEI-- 240

Query: 358 GNREQIQAVIEA 369
           G+ E + A+ +A
Sbjct: 241 GDEEAVDALAKA 252

Length = 335

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIA 187
           +P+ ++LL  P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270
             A   L     G P+     V   LPAL  L+  +DDEV   A WAL  +
Sbjct: 5   EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
           + E+     +P  +E LL++  P+++  AA AL  +            D  A+P  ++LL
Sbjct: 24  LGELGDPEALPALLE-LLKDPDPEVRRAAAEALGKLG-----------DPEALPALLELL 71

Query: 169 YSPSDD-VREQAVWALG 184
               D  VR  A  AL 
Sbjct: 72  QDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	530
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.88
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.83
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.79
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.77
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.77
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.76
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.75
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.73
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.7
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.67
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.66
PRK09687	280	putative lyase; Provisional	99.66
PRK09687	280	putative lyase; Provisional	99.65
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.63
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.6
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.6
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.59
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.59
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.58
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.57
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.54
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.5
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.5
PTZ00429	746	beta-adaptin; Provisional	99.49
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.49
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.47
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.46
PTZ00429	746	beta-adaptin; Provisional	99.45
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.44
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.43
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.43
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.39
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.38
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.36
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.24
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.23
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.2
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.17
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.12
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.07
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.07
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.05
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.05
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.02
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.01
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.99
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.97
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.97
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.97
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.94
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.93
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.85
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.83
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.78
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.76
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.74
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.72
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.72
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.7
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.68
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.67
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.63
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.62
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.6
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.59
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.58
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.57
COG5369	743	Uncharacterized conserved protein [Function unknow	98.55
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.53
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.53
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.52
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.51
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.51
TIGR02270	410	conserved hypothetical protein. Members are found	98.48
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.48
PF05536	543	Neurochondrin: Neurochondrin	98.47
TIGR02270	410	conserved hypothetical protein. Members are found	98.42
COG5369	743	Uncharacterized conserved protein [Function unknow	98.41
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.41
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.39
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.35
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.34
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.32
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.28
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.27
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.27
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.2
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.2
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.19
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.18
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.18
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.18
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.17
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.16
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.14
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.13
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.11
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.11
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.09
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.09
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.05
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.05
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.04
PF05536	543	Neurochondrin: Neurochondrin	98.04
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.03
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.99
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.98
KOG0567	289	consensus HEAT repeat-containing protein [General	97.93
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.9
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.89
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.89
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.88
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.88
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.88
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.87
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.83
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.79
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.76
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.74
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.73
KOG0567	289	consensus HEAT repeat-containing protein [General	97.72
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.69
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.6
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.57
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.56
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.52
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.48
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.46
PRK14707	2710	hypothetical protein; Provisional	97.46
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.45
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.44
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.42
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.38
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.36
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.36
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.35
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.35
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.34
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.33
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.32
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.32
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.31
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.29
PRK14707	2710	hypothetical protein; Provisional	97.28
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.27
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.26
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.24
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.23
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.13
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.1
PF05004	309	IFRD: Interferon-related developmental regulator (	97.09
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.07
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.01
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.98
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.94
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.86
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.82
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.82
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.78
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.77
KOG3036	293	consensus Protein involved in cell differentiation	96.72
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.69
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.69
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.66
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.62
PF05004	309	IFRD: Interferon-related developmental regulator (	96.6
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.52
KOG1243	690	consensus Protein kinase [General function predict	96.52
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.51
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.48
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.47
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.46
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.46
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.44
KOG3036	293	consensus Protein involved in cell differentiation	96.37
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.35
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.24
KOG2956	516	consensus CLIP-associating protein [General functi	96.24
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.23
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.22
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.17
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.15
KOG2956	516	consensus CLIP-associating protein [General functi	96.06
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.04
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.99
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.9
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.83
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.75
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.67
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.67
KOG2025	892	consensus Chromosome condensation complex Condensi	95.67
KOG1243	690	consensus Protein kinase [General function predict	95.65
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.63
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.63
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.6
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.58
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.57
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.54
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.47
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	95.47
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.34
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.28
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.25
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	95.24
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.1
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.09
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.97
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.85
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.7
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.63
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.61
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.58
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.54
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.53
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.35
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.21
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.18
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.18
KOG2025	892	consensus Chromosome condensation complex Condensi	94.14
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.13
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.1
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.02
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.94
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.37
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.28
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.26
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	93.25
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	93.09
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.97
KOG2005	878	consensus 26S proteasome regulatory complex, subun	92.88
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	92.85
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.83
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.73
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.54
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.51
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.5
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	92.38
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.37
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.19
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.13
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.07
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	91.92
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.91
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.86
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.78
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.75
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.51
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	91.39
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	91.29
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.28
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.26
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	91.26
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	90.97
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.93
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	90.73
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	90.09
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	90.04
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	89.87
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.79
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	89.5
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.22
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	89.0
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	88.85
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	88.67
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	88.15
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	87.92
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	87.75
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.57
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	86.12
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.06
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	86.02
cd03561	133	VHS VHS domain family; The VHS domain is present i	85.92
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	85.84
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	85.71
cd03561	133	VHS VHS domain family; The VHS domain is present i	85.42
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	84.98
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	84.95
KOG0413	1529	consensus Uncharacterized conserved protein relate	84.78
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	84.35
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.22
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	84.08
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.89
PF04821	266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	83.81
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	83.61
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	83.51
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	83.25
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	83.14
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	83.0
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.58
KOG0413	1529	consensus Uncharacterized conserved protein relate	82.57
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	81.64
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	81.6
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	81.4
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	81.13
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	81.12
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	81.08
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	80.78
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	80.31
smart00509	75	TFS2N Domain in the N-terminus of transcription el	80.29

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.2e-88  Score=598.72  Aligned_cols=514  Identities=53%  Similarity=0.838  Sum_probs=468.7

Q ss_pred             CCchHhhhhcCC--CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcC
Q 009622            7 SKADSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWS   84 (530)
Q Consensus         7 ~~~~~~~~~~k~--~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s   84 (530)
                      +.++.|+.+||.  .++++|+||||++++++|||+||++.+.||||.....+...++  --+..++....+|.+.+.|.|
T Consensus         5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss--~i~meqq~~~elp~lt~~l~S   82 (526)
T COG5064           5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESS--FIPMEQQFYSELPQLTQQLFS   82 (526)
T ss_pred             cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhc--cCchhHHhhhhhHHHHHHHhh
Confidence            367889999998  4889999999999999999999999999999984322221111  012223333578999999999


Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009622           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  164 (530)
                      +|.+.|..|...+|+++|.+.+|+++.+++.|++|.++++|......-++++|+|+|+|+++++..+++.+++.|++|.+
T Consensus        83 dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlf  162 (526)
T COG5064          83 DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLF  162 (526)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHH
Confidence            99999999999999999999999999999999999999999654436889999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHHhhhhccCC-CCCChhhhh
Q 009622          165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGK-PQPPFDQVS  242 (530)
Q Consensus       165 ~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~~~~  242 (530)
                      +++|.+++.+++++++|+|+|++++++.+|+.++..|++.+++.++..+. +..+.+++.|+|+|||++. |.+......
T Consensus       163 iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is  242 (526)
T COG5064         163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS  242 (526)
T ss_pred             HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH
Confidence            99999999999999999999999999999999999999999999995433 5799999999999999998 788888999


Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009622          243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC  322 (530)
Q Consensus       243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  322 (530)
                      ..+|.|.+++.+.|+++..+|||+++++++.+.+.++.+++.|+.++|+++|.+++..++.+|++.+||+++|++.+++.
T Consensus       243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv  322 (526)
T COG5064         243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV  322 (526)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC-
Q 009622          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG-  401 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-  401 (530)
                      +++.|+++.+..+|+++ ...+|++|||+++|+++++.++++.+++.+++|+|+++|...+..++++||||+.|...++ 
T Consensus       323 iI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~  401 (526)
T COG5064         323 IINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL  401 (526)
T ss_pred             heecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            99999999999999999 8899999999999999999999999999999999999999999999999999999999877 


Q ss_pred             -CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009622          402 -THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA  480 (530)
Q Consensus       402 -~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  480 (530)
                       .|+.+++|+++|++++|+++|+..+.++.+.+++++.++++.++.+........|.|..++++.||++.|..+|++.|.
T Consensus       402 ~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~  481 (526)
T COG5064         402 NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNR  481 (526)
T ss_pred             CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcccc
Confidence             5789999999999999999999999999999999999999999998877777788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCC--CCCCCCCCCCcccCCCCCCCCCCCCCc
Q 009622          481 EIYEKSVKLLETYWLDDEDET--MPPGDASQPGFGFGGNGNPPAPSGGFN  528 (530)
Q Consensus       481 ~v~~~a~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (530)
                      +||.+|+.||++||++++.-+  +|++.+.  .|+|.++.   .+++.|+
T Consensus       482 ~iy~KAYsIIe~fFgeeD~vd~lapet~g~--tftfg~~~---~~qg~f~  526 (526)
T COG5064         482 TIYDKAYSIIEKFFGEEDAVDELAPETAGN--TFTFGSNV---NQQGNFN  526 (526)
T ss_pred             HHHHHHHHHHHHHcccchhhhhcCccccCC--eeecCCCc---cccCCCC
Confidence            999999999999999887533  6776653  78897664   4554443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-85  Score=626.14  Aligned_cols=508  Identities=65%  Similarity=1.015  Sum_probs=460.7

Q ss_pred             chHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCh
Q 009622            9 ADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDS   87 (530)
Q Consensus         9 ~~~~~~~~k~-~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~   87 (530)
                      ...|+++||+ +++++|+||||++..+++||.||++.++|||+...+....  .  .....+......+..+..+.|+++
T Consensus         5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~S~~~   80 (514)
T KOG0166|consen    5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLD--E--LLSDSQSQASNLELMLAALYSDDP   80 (514)
T ss_pred             hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccc--c--ccchhHHHhhhhHHHHHHHhCCCH
Confidence            3456666776 6999999999999999999999999999999932221110  0  111122222347889999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009622           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (530)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  167 (530)
                      ..+..+...++++++.+.+|++..++..|++|.||++|...+++.++.+|+|+|+||++++++....+++.|++|.|+++
T Consensus        81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L  160 (514)
T KOG0166|consen   81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL  160 (514)
T ss_pred             HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence            99999999999999999899999999999999999999876669999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHH
Q 009622          168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALP  246 (530)
Q Consensus       168 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~  246 (530)
                      +.+++..++++|+|+|+|++++++.+|+.++..|++++|+.++..+....+.++++|+|+|||+++ |.+.+.....++|
T Consensus       161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp  240 (514)
T KOG0166|consen  161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP  240 (514)
T ss_pred             hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999965555689999999999999999 8888899999999


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc
Q 009622          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~  326 (530)
                      .|..++.+.|++++.++||+++||++++.+.++.+++.|+++.|+++|.+.+..++.+|++++||+++|++.+++.+++.
T Consensus       241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~  320 (514)
T KOG0166|consen  241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS  320 (514)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH
Q 009622          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI  406 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~  406 (530)
                      |+++.|..++...+...++++|||+++|+++|++++++.+++.|++|.|+.+|+.++.++|++|+||++|++.+++++++
T Consensus       321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi  400 (514)
T KOG0166|consen  321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI  400 (514)
T ss_pred             ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence            99999999999654777999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009622          407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS  486 (530)
Q Consensus       407 ~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a  486 (530)
                      .+|++.|++++|+++|...|.+++..+++++.++++.++......  + +++..+++++||+++|+.||+|+|++||++|
T Consensus       401 ~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~--~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A  477 (514)
T KOG0166|consen  401 KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG--T-NPLAIMIEEAGGLDKIENLQSHENEEIYKKA  477 (514)
T ss_pred             HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc--c-cHHHHHHHHccChhHHHHhhccccHHHHHHH
Confidence            999999999999999999999999999999999999999876432  1 8899999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009622          487 VKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF  529 (530)
Q Consensus       487 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (530)
                      ..||++||.++++++...  ....+|+|.++    .|.++|||
T Consensus       478 ~~II~~yf~~e~~~~~~~--~~~~~~~~~~~----~~~~~f~f  514 (514)
T KOG0166|consen  478 YKIIDTYFSEEDDEDDQQ--PTTSQFTFQVQ----APDGGFNF  514 (514)
T ss_pred             HHHHHHhcCCCccccccc--ccccccccCCC----CCCCCCCC
Confidence            999999999876554222  11126777655    38899998

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-43  Score=338.16  Aligned_cols=368  Identities=26%  Similarity=0.403  Sum_probs=329.6

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.+|.+++.+.. .++.+|++|+|+|.+++++. ....+.+++.|.+|.|+.++.+++ ..++++|+|+|+|++.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            799999999985 56999999999999999986 677888899999999999999999 999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      ++.+++.|+++.|+.++..++. .+..++.|+|.|+|.+....-..-.-..+++.|..++ .+.|++++..+||++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999987654 7889999999999977622222223344788999999 8999999999999999999


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHH
Q 009622          231 RGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT  308 (530)
Q Consensus       231 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~  308 (530)
                      .+. +........|++|.|+.+|.+.+..++..++++++|++.+++.+.+.++..|+++.|..++. +....++..|+|+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            887 44455667899999999999999999999999999999999999999999999999999999 5667799999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      ++||+.|+.++.+.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+|++|+.+|...|.++.
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii  424 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII  424 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence            9999999999999999999999999999999 99999999999999998 789999999999999999999988899999


Q ss_pred             HHHHHHHHHhhcCCC-------HHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          388 KEAAWAISNATSGGT-------HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~-------~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ..++.+|.|+...+.       ......+-+.|+++.+-.+-.+++.++-..|...+.+.+...
T Consensus       425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            999999999986442       234556668899999988888888899999888888777554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.2e-43  Score=313.12  Aligned_cols=372  Identities=24%  Similarity=0.342  Sum_probs=324.0

Q ss_pred             Cchhhhc--CCHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 009622           66 PGTAKKL--ENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT  142 (530)
Q Consensus        66 ~~~~~~~--~~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~  142 (530)
                      ++++..+  +.+|++++++. ....-.+++|+|+|.+++|+. ....+.+++.|.+|.++++|.++. .+++.+++|+|+
T Consensus       105 PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALG  182 (526)
T COG5064         105 PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALG  182 (526)
T ss_pred             CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhc
Confidence            4444433  68999999995 556678999999999999986 667777889999999999999998 899999999999


Q ss_pred             HHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHH
Q 009622          143 NIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR  220 (530)
Q Consensus       143 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~  220 (530)
                      |++.+++.+++.+.+.|++..++.++.+.  +..+.+.+.|+|+|+|.+...--+.-.-...++.|.+++ .+.|+++..
T Consensus       183 NiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlv  261 (526)
T COG5064         183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLV  261 (526)
T ss_pred             cccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHH
Confidence            99999999999999999999999999774  457889999999999965422112111223788899998 889999999


Q ss_pred             HHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc
Q 009622          221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP  299 (530)
Q Consensus       221 ~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~  299 (530)
                      .|||++++|+.+. .........|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.++..|+++.+..+|+++..
T Consensus       262 DA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke  341 (526)
T COG5064         262 DACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE  341 (526)
T ss_pred             HHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh
Confidence            9999999999987 333445567888899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHH
Q 009622          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLV  376 (530)
Q Consensus       300 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~  376 (530)
                      .++..|||+++|+..|+.++.+.+++.+++|.|+.+|.+. +..++++|||+++|..++   -|+.++++++.|+|.+|+
T Consensus       342 ~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc  420 (526)
T COG5064         342 NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC  420 (526)
T ss_pred             hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence            9999999999999999999999999999999999999998 999999999999999984   688999999999999999


Q ss_pred             HHHhcCchhHHHHHHHHHHHhhcCCC---------H-HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622          377 ALLENAEFDIKKEAAWAISNATSGGT---------H-EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       377 ~ll~~~~~~v~~~a~~aL~nl~~~~~---------~-~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll  441 (530)
                      .+|...+.++.+-++.++-|+...|.         . .+..++-+.|+++.+..+-++.+.++-..|-.++..++
T Consensus       421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF  495 (526)
T COG5064         421 DLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF  495 (526)
T ss_pred             HHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence            99999888899999999999987662         2 34445556899999999999999988888777766655

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.1e-39  Score=355.08  Aligned_cols=408  Identities=20%  Similarity=0.215  Sum_probs=344.6

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      -+.+|.++..|.++++..|..|++.+.++++.. .+.+..+++.|++|.|+++|.+++++.+|++|+|+|++|+.+++++
T Consensus       188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            379999999999999999999999998887664 4578889999999999999987654799999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHhhhCCCch-----------hhhh---HhhcCChHHHHH
Q 009622          152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRDL---VLSQGGLVPLLA  208 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~---------~~~~~~a~~~L~nl~~~~~~-----------~~~~---i~~~~~i~~Ll~  208 (530)
                      +..+++.|+++.|+.++.+++         ..++++|+|+|+|||++.+.           .|+.   ....|++.+++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999997654         34699999999999987543           2222   134577888888


Q ss_pred             hhcCCCchhHH----HHHHHHhhhhccCC-CCCChh-------------------hhhchHHHHHHhhcCCChhHHHHHH
Q 009622          209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFD-------------------QVSPALPALAHLIHSNDDEVLTDAC  264 (530)
Q Consensus       209 ll~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~-------------------~~~~~l~~L~~ll~~~d~~v~~~a~  264 (530)
                      ++ +..+....    ..++|+|.+|++++ +.....                   ...++++.|+.++...+.+++..++
T Consensus       347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av  425 (2102)
T PLN03200        347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI  425 (2102)
T ss_pred             hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence            77 44443333    35789999999987 332121                   1135667888899989999999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhH
Q 009622          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (530)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  344 (530)
                      |+|.+++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.++++++..+++.|++|.|+.+|.++ +..+
T Consensus       426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i  504 (2102)
T PLN03200        426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA  504 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence            999999999889999999999999999999999999999999999999999998899999999999999999998 9999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009622          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC  424 (530)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~  424 (530)
                      +++|+|+|+|++.+++.....+.+.|+++.|+++|.+++++++..|+|+|.|++..++.+.         ++.++.+|.+
T Consensus       505 qeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLls  575 (2102)
T PLN03200        505 KEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLLG  575 (2102)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhcC
Confidence            9999999999998754444444478999999999999999999999999999998776553         4677888999


Q ss_pred             CChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCC
Q 009622          425 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDED  499 (530)
Q Consensus       425 ~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~  499 (530)
                      +++.++..++.++.+++...+....        ........||++.|.+|+.|+++++++.|.++|..||.+..+
T Consensus       576 dd~~~~~~aL~vLgnIlsl~~~~d~--------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        576 DLPESKVHVLDVLGHVLSVASLEDL--------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             CChhHHHHHHHHHHHHHhhcchhHH--------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            9999999999999999886654221        122344579999999999999999999999999999986543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=8.2e-38  Score=342.65  Aligned_cols=415  Identities=19%  Similarity=0.196  Sum_probs=367.8

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.++.+|...+.+.|..++++|..++.++ ...++.+.+.|++|.|+++|.+++ +.+|..|+|+|++++.++.+++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            56788999999999999999999999987664 677889999999999999999988 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|++++|+++| .+.+...++.++|+|.+|+..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998887888888899999999999 677899999999999999754


Q ss_pred             CCCCC-----------------------------------h---hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622          233 KPQPP-----------------------------------F---DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       233 ~~~~~-----------------------------------~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .....                                   .   ....++++.|+.++.++++.++..++|+|.+++...
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            31110                                   0   012478999999999999999999999999999998


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      .+..+.++..|+++.++.+|.+++..++..++++|++++.+.. .+...+++.|+++.|+++|.+. +.+++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999997543 4455678999999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH-H-HHHHHcCChHHHHhccCCCChHHHH
Q 009622          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-I-KFLVIQGCIKPLCDLLVCPDPRIVT  431 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~l~~L~~lL~~~~~~v~~  431 (530)
                      |++... +....+.+.|+++.|+++|.+++++.|+.|+|+|.+++.+.+.++ . .++...|.+.+|+++|+..|.+...
T Consensus       720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~  798 (2102)
T PLN03200        720 NLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA  798 (2102)
T ss_pred             HHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence            998864 456677788999999999999999999999999999999876554 3 6667889999999999999888776


Q ss_pred             H--HHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009622          432 V--CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       432 ~--al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                      .  ++++|..+.+..+....    ..+++..+++..++++.|.....|.+|.++++|.+||+++-.+
T Consensus       799 ~~~al~~l~~l~~~~~~~~~----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~  861 (2102)
T PLN03200        799 TSEALEALALLARTKGGANF----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD  861 (2102)
T ss_pred             HHHHHHHHHHHHhhcccCCC----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence            6  99999999986555433    3578999999999999997777999999999999999998764

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-29  Score=227.37  Aligned_cols=363  Identities=20%  Similarity=0.220  Sum_probs=314.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +...+++-.+++.++.+|..|..++.+++-.  ....-.+++-+.+..|+.-+..+. .++|..++.|++|++.. ++++
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk  160 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK  160 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence            4678888899999999999999999998765  333334455556666665554445 58999999999999994 7888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+...|++..+.++-++.+..++..+..+|.|+.... +.|+.++..|+++.|+.++ ++.+..++..++.++++++-.
T Consensus       161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd  238 (550)
T KOG4224|consen  161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD  238 (550)
T ss_pred             hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence            88999999999999888899999999999999996554 4789999999999999999 899999999999999999988


Q ss_pred             CCCCChhhhhc--hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622          233 KPQPPFDQVSP--ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       233 ~~~~~~~~~~~--~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~  310 (530)
                      ..........+  ++|.|+.++.++++.+.-.+..+|.+++..... ...++++|.+|.++++|+++........+.|+.
T Consensus       239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag~lP~lv~Llqs~~~plilasVaCIr  317 (550)
T KOG4224|consen  239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAGSLPLLVELLQSPMGPLILASVACIR  317 (550)
T ss_pred             HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence            65555544444  999999999999999999999999999977654 456889999999999999998888999999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009622          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      |++...-. .-.+++.|++.+|+.+|..+.+.+++..|..+|.|++..+......+.+.|.+|.++.++.++...+|.+.
T Consensus       318 nisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei  396 (550)
T KOG4224|consen  318 NISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI  396 (550)
T ss_pred             hcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence            99874432 23567999999999999998667799999999999999888889999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009622          391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~  445 (530)
                      ..++..++...  ....++.+.|+++.|+.++.+.+.+++-++..+|.++...-+
T Consensus       397 sac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  397 SACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             HHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence            99999999853  677889999999999999999999999999999999986543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.5e-29  Score=224.08  Aligned_cols=363  Identities=19%  Similarity=0.246  Sum_probs=318.0

Q ss_pred             hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      .+..+..++..+..+..++|..++.++.+++..  +.....+..+|.+..+.++-++.+ ..+|..+..+|.|++. +.+
T Consensus       124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E  199 (550)
T KOG4224|consen  124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE  199 (550)
T ss_pred             eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence            456788888888888899999999999999877  566677888999999999877777 8999999999999998 789


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      +++.++.+|++|.|+.++++.+..++..|..+++||+.+.. .|+.+.+.+  .++.|++++ .++++.++..|..+|.+
T Consensus       200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn  277 (550)
T KOG4224|consen  200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN  277 (550)
T ss_pred             hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998776 688888888  999999999 88899999999999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-chhHHHHHH
Q 009622          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALR  307 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~~~~a~~  307 (530)
                      |+.+..........+.+|.++++++++-.........|+.|++-++- +...+.+.|++..|+.+|..++ +.++..|..
T Consensus       278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvs  356 (550)
T KOG4224|consen  278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS  356 (550)
T ss_pred             hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence            99987777777889999999999998877777777889999986653 2345778999999999999865 559999999


Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      +|.|++.........+.+.|.+|.+..++.++ .-.+|.+...+++.++.. ......+.+.|++|.|+.+..+.+.+++
T Consensus       357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~  434 (550)
T KOG4224|consen  357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR  434 (550)
T ss_pred             HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence            99999998888888999999999999999998 888999998899888764 3456678999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHH------cCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          388 KEAAWAISNATSGGTHEQIKFLVI------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      .+|+.||.|++..  .++...+++      .|+-..|..++.+.+..+...+.|.+..++...
T Consensus       435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            9999999999984  455555443      255667899999999999999999999988765

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=1.4e-24  Score=221.19  Aligned_cols=389  Identities=20%  Similarity=0.183  Sum_probs=318.6

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +++-..++..+ .+...++..|.+++..  ......|...|+++.|+++|++++ .++...++++|.+++. ..+++..+
T Consensus       253 kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM  327 (708)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            34444444433 3445778889998765  466678889999999999999887 8999999999999999 68899999


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009622          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (530)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~  235 (530)
                      .+.|+++.|.+++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.++ .+  +..+..++.+|+++|..+..
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL-~d--~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELL-KD--PNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHh-CC--CchHHHHHHHHHHhccCHhh
Confidence            999999999999999999999999999999987776 799999999999999999 33  34567799999999998876


Q ss_pred             CChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622          236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~  314 (530)
                      .......+++|.+++++.+ +++.+...+++.+.|++.+.. +.+.+++.++++.|++........+   .+..+.|++.
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~  479 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQ  479 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHh
Confidence            6666778899999887654 567777788889999987664 5577888888999998865544322   4468889988


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHH
Q 009622          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAW  392 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~  392 (530)
                      +.+.....+.  +.+..|..++..+.+++...++..+|+|+...+.+..+.+-+.+++|.|.+.|..+  ++++..+++.
T Consensus       480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            7644333332  47778888888776889999999999999876555555566789999999999876  5689999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009622          393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK  470 (530)
Q Consensus       393 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (530)
                      .++.++.  +++....+.+.|+++.|+++|.  .+|.+++..++.+++.++.+.+.           ...++.+.+....
T Consensus       558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-----------r~~ll~~~~~~~y  624 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-----------REVLLKETEIPAY  624 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-----------HHHHHhccchHHH
Confidence            9999997  6678888889999999999997  45788999999999999998765           2456677899999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH
Q 009622          471 IESLQTHDNAEIYEKSVKLLET  492 (530)
Q Consensus       471 l~~l~~~~~~~v~~~a~~il~~  492 (530)
                      +.+|+++.|++|.+.|...++-
T Consensus       625 lidL~~d~N~~ir~~~d~~Ldi  646 (708)
T PF05804_consen  625 LIDLMHDKNAEIRKVCDNALDI  646 (708)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHH
Confidence            9999999999999888777763

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=1.6e-23  Score=213.41  Aligned_cols=361  Identities=19%  Similarity=0.209  Sum_probs=303.9

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.|++.|.+++.++...++..|.++...  ..+...|.+.|+++.|++++.+++ ..++..++++|.|++. +++.+
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence            6899999999999999999999999998655  567889999999999999999988 8999999999999999 78899


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+++.|++|.|+.+|.++  ..+..|+.+|.+++.+.. .|..+...++++.+++++...++..+...+++.+.|++.+
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999754  466779999999998765 7889999999999999987777788888899999999999


Q ss_pred             CCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG  310 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~  310 (530)
                      ..+.......++++.|++.... .|+-    .+..+.|++.++......+.  +++..|+.++..+ +++....++.+|+
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa  516 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA  516 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence            8766666666788888776544 3433    33588888887744333332  5788888888764 6789999999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009622          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK  387 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~  387 (530)
                      |+...+....+.+-+.+++|.|..+|..+. .+++.-+++..++.++. ++.....+.+.|+++.|+.++...  |.++.
T Consensus       517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V  595 (708)
T PF05804_consen  517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIV  595 (708)
T ss_pred             hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence            999876666666667899999999998653 56799999999999875 467777888999999999999766  68999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009622          388 KEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN  449 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~  449 (530)
                      .+.++++..+..+.  +.++.++ +.+++..|++++.+.++.++..|-.+|.-+....+.+..
T Consensus       596 lQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~  656 (708)
T PF05804_consen  596 LQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAE  656 (708)
T ss_pred             HHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            99999999999974  5666666 468899999999999999999999999999988877643

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.3e-20  Score=183.64  Aligned_cols=388  Identities=20%  Similarity=0.290  Sum_probs=314.1

Q ss_pred             CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .+.+|+..|+.. |+..|++|+..+..+++....+....+--..++|.|+.+|++..+.+++..|+++|++++.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            568888888875 9999999999999999987555555444456899999999998889999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+++.++||.|+.-|.. ...++.++++.+|-.|+...+.   .+++.|++...+..+ +.....+++.|+.+..|.|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999987766 7789999999999999988763   678999999999999 77789999999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCC----CchhHHH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIP  304 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~----~~~~~~~  304 (530)
                      .-+...+..+...+|.|..+|...|...++.++.++.++++.   .++..+.+...|++....+++.-.    +..+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            988888888999999999999999999999999999999854   566778889999999999998764    2345667


Q ss_pred             HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc-------------hhHHHHHH----------------------
Q 009622          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK-------------KSIKKEAC----------------------  349 (530)
Q Consensus       305 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-------------~~v~~~a~----------------------  349 (530)
                      .++.+..++++++-....+++.++...|..+|.....             |.-..+..                      
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            7888888898888777777787887777777753100             00000000                      


Q ss_pred             ------------------------------HHHHHH-------------h---------cCCHHHHHHHHHhCcHHHHHH
Q 009622          350 ------------------------------WTVSNI-------------T---------AGNREQIQAVIEANIIGPLVA  377 (530)
Q Consensus       350 ------------------------------~~L~nl-------------~---------~~~~~~~~~l~~~~~i~~L~~  377 (530)
                                                    .++..+             .         ...|+..+.+.. .++|.|++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve  562 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE  562 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence                                          011100             0         011122222222 47899999


Q ss_pred             HHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCc
Q 009622          378 LLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDV  455 (530)
Q Consensus       378 ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~  455 (530)
                      ++.+. ++.||..++.||..+.+..+.+.+..++.. .+-..+..+|.++|..++..+|.....|++..+.         
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd---------  633 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD---------  633 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH---------
Confidence            98877 899999999999999999999998888854 5666788999999999999999999999877654         


Q ss_pred             hhhHHHhhhhccHHHHHHHhc
Q 009622          456 NVFTQMIDDAEGLEKIESLQT  476 (530)
Q Consensus       456 ~~~~~~~~~~~~~~~l~~l~~  476 (530)
                       .|...|.+.|++..+..|..
T Consensus       634 -~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  634 -TFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             -HhhhhHhhhhHHHHHHHHhc
Confidence             37888999999999999976

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.83  E-value=4.1e-18  Score=169.95  Aligned_cols=366  Identities=20%  Similarity=0.233  Sum_probs=285.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR  194 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--~~  194 (530)
                      -+|..+.+|.+.+ +.+|..|+.-+-.+|.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.||..+...  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4778899999888 99999999999999999999999999999999999999999999999999999999976654  66


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC--------------CChhHH
Q 009622          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--------------NDDEVL  260 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v~  260 (530)
                      -.+.+.+.++.++.++....|.++++.++.+|+||++.+ ..+.......++.|..-+-.              .+.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            778899999999999977789999999999999999984 44455556666666554321              136788


Q ss_pred             HHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCC------CCchhHHHHHHHHhHhhcCCc-----h----------
Q 009622          261 TDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDD-----M----------  318 (530)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~~~~-----~----------  318 (530)
                      .++..+|.|++....+..+.+.+ .|+|..|+..+++      .+....++|+.++.|++..-.     .          
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            89999999999876666665654 5889999888763      356678888888888864221     0          


Q ss_pred             ----------------hhHH----------------------HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009622          319 ----------------QTQC----------------------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (530)
Q Consensus       319 ----------------~~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (530)
                                      ....                      +....++..-+.+|....++.+.+.++.+|-|++++..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                            0000                      01112344444555544477899999999999998532


Q ss_pred             ---H-HHHHH-HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC------ChHH
Q 009622          361 ---E-QIQAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP------DPRI  429 (530)
Q Consensus       361 ---~-~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~------~~~v  429 (530)
                         . ....+ .+..+++.|++++..++..|...++.+|.||+.+.  .. +.++-.++++.|+++|...      +.++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence               2 22333 46789999999999999999999999999999953  33 4455688999999999643      3568


Q ss_pred             HHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCC
Q 009622          430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~il~~~~~~~~  498 (530)
                      +..++..|.+++.....           ...-+-+.+|+++|..|. ...++.+.+.|..++..+|...|
T Consensus       629 v~~vc~tl~niv~~~~~-----------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVL-----------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHhHHHHHHHhHH-----------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            88899999999865543           245555699999999885 45677899999999999988644

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.79  E-value=1.7e-15  Score=153.66  Aligned_cols=398  Identities=18%  Similarity=0.175  Sum_probs=303.4

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +.+...+.+.+.+....++..|.+++...  .+...  ..++.+.|...|.+++ +.++..+++.|.+++..+......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            34777888888888888999999998763  22221  4567889999999988 9999999999999999777777888


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC
Q 009622          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (530)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~  235 (530)
                      .+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            88999999999999999999999999999999877654 4566777788888888 555777888899999999987633


Q ss_pred             -CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch-----hH-HHHHHH
Q 009622          236 -PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-----VL-IPALRT  308 (530)
Q Consensus       236 -~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-----~~-~~a~~~  308 (530)
                       .......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+.+.+     +. ...+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence             3344457899999999999999999999999999998 555678899999999999999764322     22 233477


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHh-C----cHHHHHHHHhcC
Q 009622          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV-IEA-N----IIGPLVALLENA  382 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~i~~L~~ll~~~  382 (530)
                      .++++...+....... ..++..+..++.+. ++..+..|.-+++.+++. .+....+ .+. +    ++..+.....++
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~  349 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG  349 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence            8888875443322111 24566777777887 999999999999999864 4555555 332 2    344555555666


Q ss_pred             chhHHHHHHHHHHHhhcCCCH---HH----HHHHH---HcCChH-HHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcC
Q 009622          383 EFDIKKEAAWAISNATSGGTH---EQ----IKFLV---IQGCIK-PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG  451 (530)
Q Consensus       383 ~~~v~~~a~~aL~nl~~~~~~---~~----~~~l~---~~~~l~-~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~  451 (530)
                      ..++|..++.+|.++...+..   +.    .+...   ..+... .+..+++.+-++++..++..|..++...-.     
T Consensus       350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg-----  424 (503)
T PF10508_consen  350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG-----  424 (503)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence            789999999999999654432   11    11111   223455 788899999999999999999999877532     


Q ss_pred             CCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          452 NTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                            ...+....|.++.+.+=....+.+..++=..++.++..
T Consensus       425 ------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~  462 (503)
T PF10508_consen  425 ------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK  462 (503)
T ss_pred             ------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence                  24556667777777666667888888888888888764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.77  E-value=3.3e-15  Score=151.55  Aligned_cols=402  Identities=20%  Similarity=0.196  Sum_probs=296.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      +..+++.|...  ...+.++..+...+..  .+...    ....+.+...+++.+ .+....++.+|..+.... .... 
T Consensus         5 ~~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~----~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~-   73 (503)
T PF10508_consen    5 INELLEELSSK--AERLEALPELKTELSS--SPFLE----RLPEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDS-   73 (503)
T ss_pred             HHHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHH----hchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHH-
Confidence            34555555544  3344555555554433  12122    122334788888776 666778888888888732 2222 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      + ..+..+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++ .+++..+...|+.+|..++...+
T Consensus        74 l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~  151 (503)
T PF10508_consen   74 L-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPE  151 (503)
T ss_pred             H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCch
Confidence            2 346778999999999999999999999999988887778888899999999999 89999999999999999998765


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~  314 (530)
                      ........+.++.|..++..+++.++..++.++.+++..+++....+.+.|+++.++..+.+++.-++..++.++..++.
T Consensus       152 ~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~  231 (503)
T PF10508_consen  152 GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE  231 (503)
T ss_pred             hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence            54444456668889999988888999999999999999999999999999999999999999998999999999999999


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCC-ch---h-HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHH
Q 009622          315 GDDMQTQCVIEYQALPCLLNLLSGNY-KK---S-IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE  389 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  389 (530)
                       .++..+.+.+.|+++.|..++.+.. ++   . .--......++++...+..+.... ..++..|.+++.+.|+..+..
T Consensus       232 -~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~  309 (503)
T PF10508_consen  232 -TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREV  309 (503)
T ss_pred             -ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHH
Confidence             7777888999999999999997653 23   1 112333566777764444332222 246667777888889999999


Q ss_pred             HHHHHHHhhcCCCHHHHHHH-HHcC-----ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhh
Q 009622          390 AAWAISNATSGGTHEQIKFL-VIQG-----CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMID  463 (530)
Q Consensus       390 a~~aL~nl~~~~~~~~~~~l-~~~~-----~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~  463 (530)
                      |..+++.++.  +.+....| ...+     ++..+.........+++..++.++.+++...+....  ++-.+.....++
T Consensus       310 A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~--~~i~~~~~~w~~  385 (503)
T PF10508_consen  310 AFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQD--NDILSITESWYE  385 (503)
T ss_pred             HHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCch--HHHHHHHHHHHH
Confidence            9999999987  55666666 3322     366666666778889999999999999876643110  000011122223


Q ss_pred             hhcc--HH-HHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          464 DAEG--LE-KIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       464 ~~~~--~~-~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ..++  .. .+..+...+=+|++-.+..++...+.
T Consensus       386 ~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  386 SLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             HhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            2222  33 66777888989999999999987654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.77  E-value=2.7e-16  Score=157.13  Aligned_cols=363  Identities=20%  Similarity=0.224  Sum_probs=275.1

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--h
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--H  151 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~  151 (530)
                      .+|+.+.+|.+.++.+|-.|+..+..+.... +.....+.+.|.|+.|+.+|.+.. .+++..|+++|.|++.++..  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            7899999999999999999999999776542 444556668999999999999998 99999999999999998766  8


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-------------CCchh
Q 009622          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------------QPKLS  217 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-------------~~~~~  217 (530)
                      .-.+.+.++|+.++++|.. .|.++++.+..+|+||++.+ .++..++. ..+..|...+..             -.+.+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence            8888899999999999987 78999999999999998774 35555443 356666554421             11467


Q ss_pred             HHHHHHHHhhhhccCCC--CCChhhhhchHHHHHHhhc------CCChhHHHHHHHHHHHhccCCh-----HHHHH----
Q 009622          218 MLRNATWTLSNFCRGKP--QPPFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTN-----DKIQA----  280 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~--~~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~l~~l~~~~~-----~~~~~----  280 (530)
                      +..+++.||.|++....  ...+-...|++..|+..++      ..|..-.+++...+.|++..-.     ...+.    
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            89999999999998652  2233446788888888776      2366777888888888874322     00000    


Q ss_pred             --------------------------------------------HHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcC
Q 009622          281 --------------------------------------------VIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       281 --------------------------------------------~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~  315 (530)
                                                                  +....++..-..+|. +.+..+.+.++.+|-|++.+
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                                                        001112222122222 34567888999999999987


Q ss_pred             Cchh----hHHH-hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC------ch
Q 009622          316 DDMQ----TQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA------EF  384 (530)
Q Consensus       316 ~~~~----~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~  384 (530)
                      ....    ...+ .+..+++.|+.+|..+ +..+.+.++.+|.|++.+-  ..+.++..+.++.|++.|...      +.
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~se  626 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSE  626 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence            6533    3333 4778999999999999 9999999999999998752  234566678999999999665      36


Q ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhh
Q 009622          385 DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~  444 (530)
                      ++-..++.+|.|++.. +....+.+.+.+.++.|+.+..+. +++....+...+..|=.+.
T Consensus       627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            8899999999999975 678888999999999999888765 5577777777776664443

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.76  E-value=1.8e-16  Score=146.55  Aligned_cols=355  Identities=14%  Similarity=0.112  Sum_probs=260.5

Q ss_pred             CCChHHHHHHHHHHHHhhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009622           84 SNDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~--~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  161 (530)
                      ..+..+...+..++.+....+  ++.....-++.+.+..|.+..++++ .++..++.++|+|+|.++.+.|..+.+.|+-
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            344556666777777765331  0111223356778888888888886 8999999999999999999999999999998


Q ss_pred             HHHHHhhCC----C---CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCC
Q 009622          162 PIFVKLLYS----P---SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       162 ~~L~~lL~~----~---~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      ..++.+|+.    +   +.+....+...|.|..-++.+.+..+++.|+++.|...+- .-.+....+.....+.|+.+--
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            888888764    2   3466777888999999999999999999999999988873 3345555555555555544332


Q ss_pred             CC--CChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CC-------chhH
Q 009622          234 PQ--PPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-------PSVL  302 (530)
Q Consensus       234 ~~--~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~-------~~~~  302 (530)
                      ..  .++.....+...+++++.+. .+++.+-+...+.+.++++.-.. .+.+.|.+..++.++.. ..       -...
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence            11  11222234455566666543 56666667778888877665333 36677899999888876 21       1233


Q ss_pred             HHHHHHHhHhhcCCchhhHHHhhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009622          303 IPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (530)
Q Consensus       303 ~~a~~~L~nl~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  381 (530)
                      ..++....-+..|++... .+...+ ++..+..++.+. +....-.+..+++|+++.+ +.+-++++.+++..|++++..
T Consensus       291 k~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Confidence            445555555666665543 444444 899999999999 9999999999999999875 556678888999999998864


Q ss_pred             -----CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009622          382 -----AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       382 -----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~  445 (530)
                           ++.+++..++.||.|+....  .....++..|+.+.+...++...|.++..-++.++.+...-+
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence                 36789999999999999843  445677899999999999999999999999998887765544

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5.7e-15  Score=152.83  Aligned_cols=361  Identities=17%  Similarity=0.149  Sum_probs=258.5

Q ss_pred             CHHHHHHh----hcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009622           74 NLPVMVAG----VWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (530)
Q Consensus        74 ~l~~l~~~----l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~  149 (530)
                      .||.++..    .+|+++..|..|+..|..+....++.....+  ..+.+.|.+.+.+++.+ ++..|+++++.++...+
T Consensus       115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~  191 (1075)
T KOG2171|consen  115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLE  191 (1075)
T ss_pred             chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhc
Confidence            46666655    4589999999999999988765433322222  23577788888888845 99999999999888553


Q ss_pred             ---hhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHH
Q 009622          150 ---EHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRN  221 (530)
Q Consensus       150 ---~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~  221 (530)
                         ...+.+.  ..+|.++..+..    .+......++.+|..++...|.+-...+.. ++...+.+.. ++-+..++..
T Consensus       192 ~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~  268 (1075)
T KOG2171|consen  192 NNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHL  268 (1075)
T ss_pred             cchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHH
Confidence               3333333  456777766643    566677889999999997776554332221 4555555553 3448999999


Q ss_pred             HHHHhhhhccCCCCCC---hhhhhchHHHHHHhhcCC--C-----------h---hHHHHHHHHHHHhccCChHHHHHHH
Q 009622          222 ATWTLSNFCRGKPQPP---FDQVSPALPALAHLIHSN--D-----------D---EVLTDACWALSYLSDGTNDKIQAVI  282 (530)
Q Consensus       222 a~~~L~~L~~~~~~~~---~~~~~~~l~~L~~ll~~~--d-----------~---~v~~~a~~~l~~l~~~~~~~~~~~~  282 (530)
                      |+.++..+++..|...   ......+++.++.++...  |           .   .--..+..++-.++.+-...   .+
T Consensus       269 ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v  345 (1075)
T KOG2171|consen  269 ALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QV  345 (1075)
T ss_pred             HHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---he
Confidence            9999999998843222   224466677777766421  1           0   01223444555544332211   11


Q ss_pred             HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 009622          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ  362 (530)
Q Consensus       283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  362 (530)
                      -.-+++.+..++.+.+|.-|..++.+|+.++.|+.......+ ..+++..+..|.++ +|.||..||.+++.++.+-...
T Consensus       346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~  423 (1075)
T KOG2171|consen  346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPE  423 (1075)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHH
Confidence            123567778889999999999999999999999987765543 37889999999999 9999999999999999987788


Q ss_pred             HHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhccCCCChHHHHHHHHHHHHH
Q 009622          363 IQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK-PLCDLLVCPDPRIVTVCLEGLENI  440 (530)
Q Consensus       363 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~lL~~~~~~v~~~al~~l~~l  440 (530)
                      ++.-....+++.|+..+++. +++|+..|+.++.|++..+..+.+....+ +++. .|..++.++.+.+++.++.+|..+
T Consensus       424 iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasv  502 (1075)
T KOG2171|consen  424 IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASV  502 (1075)
T ss_pred             HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            88888888999999999887 68999999999999999877665554332 4555 455566778889999999999999


Q ss_pred             Hhhhhh
Q 009622          441 LKVGEA  446 (530)
Q Consensus       441 l~~~~~  446 (530)
                      ....+.
T Consensus       503 A~AA~~  508 (1075)
T KOG2171|consen  503 ADAAQE  508 (1075)
T ss_pred             HHHHhh
Confidence            876654

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.73  E-value=1.2e-15  Score=158.84  Aligned_cols=366  Identities=20%  Similarity=0.192  Sum_probs=279.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCChhh
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~--~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      ....++.++...|++.   -.+.|..+.+.  ......+...|.+|.|+++|.-.+  +.+.+..|-.+|.||....++.
T Consensus       198 ts~sllsml~t~D~ee---~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~  272 (2195)
T KOG2122|consen  198 TSNSLLSMLGTDDEEE---MARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDE  272 (2195)
T ss_pred             hhhHHhhhcccCCHHH---HHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcch
Confidence            4446666666666543   34455555444  456677888999999999997654  3678889999999999977766


Q ss_pred             HHHHHhCCChHHHHHh----------hCC-----CC--HHHH-HHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--
Q 009622          152 TKVVIDHGAVPIFVKL----------LYS-----PS--DDVR-EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--  211 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~l----------L~~-----~~--~~~~-~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--  211 (530)
                      ...-.+.-++..|=++          +..     .+  .+-+ ..|+.+|..++.+. ++|..+-+.|++..+-+++.  
T Consensus       273 kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vD  351 (2195)
T KOG2122|consen  273 KRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVD  351 (2195)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHH
Confidence            5544333333333221          111     11  1222 35667777776555 48999999999999988773  


Q ss_pred             ---------CCCchhHHHHHHHHhhhhccCCCCCCh--hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 009622          212 ---------GQPKLSMLRNATWTLSNFCRGKPQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA  280 (530)
Q Consensus       212 ---------~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~  280 (530)
                               ......+++++..+|.||..++...+.  --..+++.+++..|.+..+++..-...+|.||+...+.....
T Consensus       352 h~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKk  431 (2195)
T KOG2122|consen  352 HEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKK  431 (2195)
T ss_pred             HHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHH
Confidence                     112467899999999999999843332  235899999999999888899888999999999776655544


Q ss_pred             H-HHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHHHHhhcCCC---chhHHHHHHHHHHH
Q 009622          281 V-IEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNY---KKSIKKEACWTVSN  354 (530)
Q Consensus       281 ~-~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~n  354 (530)
                      + -+.|-+-.|+.. +....+......+.+|+||+.++.+....+- -.|.+..|+.+|.+..   .-.+.+.|..+|.|
T Consensus       432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN  511 (2195)
T KOG2122|consen  432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN  511 (2195)
T ss_pred             HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence            4 456777777765 5556667888999999999988776655554 4599999999998752   34677888888888


Q ss_pred             Hhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009622          355 ITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT  431 (530)
Q Consensus       355 l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~  431 (530)
                      +..   .+.++++.+.+.+++..|+..|++....+..++|.+|+||+.. +++..++|++.|++..|.+++.+++..+..
T Consensus       512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~  590 (2195)
T KOG2122|consen  512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAM  590 (2195)
T ss_pred             HHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence            775   5778889999999999999999999999999999999999997 567889999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 009622          432 VCLEGLENILKVGEA  446 (530)
Q Consensus       432 ~al~~l~~ll~~~~~  446 (530)
                      -+..+|.|++..-+.
T Consensus       591 GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  591 GSAAALRNLLNFRPA  605 (2195)
T ss_pred             hHHHHHHHHhcCCch
Confidence            999999999977643

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=1.5e-14  Score=129.77  Aligned_cols=317  Identities=15%  Similarity=0.157  Sum_probs=250.9

Q ss_pred             cCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCC
Q 009622          115 SGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD  189 (530)
Q Consensus       115 ~g~v~~Lv~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~  189 (530)
                      .|..+.++..+   .+++ ..+...++.+|..+..+.++    +++..++..++.+|..  .+.++....+..+..-|..
T Consensus       103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~  177 (461)
T KOG4199|consen  103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM  177 (461)
T ss_pred             CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            45555554433   3444 78888999999998886665    4556788889998854  6678888889999999988


Q ss_pred             CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh----------hhhhchHHHHHHhhcCC-Chh
Q 009622          190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF----------DQVSPALPALAHLIHSN-DDE  258 (530)
Q Consensus       190 ~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~----------~~~~~~l~~L~~ll~~~-d~~  258 (530)
                      .+..|+.+++.++++.+...+.......+.+.++|++..|..++..+..          ..-.+++..|+..+... |+.
T Consensus       178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~  257 (461)
T KOG4199|consen  178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD  257 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence            8889999999999999998886555557999999999999887643221          12245677888888754 799


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc-h---hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-S---VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~---~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (530)
                      +...++.+|..++-.++ ..+.+.+.|++..|++++.+.+. .   ....++..|..++. ++.....+++.|+.+.++.
T Consensus       258 ~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~  335 (461)
T KOG4199|consen  258 SLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIIT  335 (461)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHH
Confidence            99999999999986654 56778899999999999988543 2   44677888888874 7777788999999999998


Q ss_pred             hhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009622          335 LLS-GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVI  411 (530)
Q Consensus       335 lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  411 (530)
                      ++. +..+|.|..+++.+++-++...|++...+++.|.-...++.|+..  ...++++|+|++.|++..+ .+++..++.
T Consensus       336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l~  414 (461)
T KOG4199|consen  336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILLA  414 (461)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHHh
Confidence            874 333899999999999999999999999999999999888888765  4679999999999999974 577777776


Q ss_pred             cCChHHHHhccCCCChHHHHHHHHHHHHH
Q 009622          412 QGCIKPLCDLLVCPDPRIVTVCLEGLENI  440 (530)
Q Consensus       412 ~~~l~~L~~lL~~~~~~v~~~al~~l~~l  440 (530)
                      .| ++.|+..-...++.....+-.+|.-+
T Consensus       415 ~G-iE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  415 NG-IEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             cc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            55 77787877778877777766666655

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.4e-14  Score=134.31  Aligned_cols=378  Identities=18%  Similarity=0.124  Sum_probs=279.8

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009622           86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV  165 (530)
Q Consensus        86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  165 (530)
                      .......|+..|.+++..  ...-..|...+++..|++.|+.++ .++.......|..++- ..+++..+.+.|++..|+
T Consensus       276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~  351 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL  351 (791)
T ss_pred             HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence            344555677888888754  344557788899999999999988 7888889999999888 678888899999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchH
Q 009622          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL  245 (530)
Q Consensus       166 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l  245 (530)
                      +++...+++++...+..+.|++.++. .|...+..|.+|.+..++..+..   ...|+..++.++.++..........++
T Consensus       352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci  427 (791)
T KOG1222|consen  352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCI  427 (791)
T ss_pred             HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHH
Confidence            99999999999999999999998876 78888899999999999943332   334667778888877666666678899


Q ss_pred             HHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHH
Q 009622          246 PALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (530)
Q Consensus       246 ~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  323 (530)
                      +.+.+.+-+ .+.++-...+..-.|++-+. .+.+.+++...+..|++. ++..+. +   ....+.|++.+.......+
T Consensus       428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~F  502 (791)
T KOG1222|consen  428 KLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNMF  502 (791)
T ss_pred             HHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHHH
Confidence            988776543 45555444444445665433 234555665667777665 333332 2   3455677776555343344


Q ss_pred             hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCC
Q 009622          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~  401 (530)
                      ++  .+.-|...+....+...-.++..+++|+...+-+-.+.+-+.+++|.+-..|..+  ..++....+.+++.++.  
T Consensus       503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--  578 (791)
T KOG1222|consen  503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--  578 (791)
T ss_pred             HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence            43  3556666676664677888999999999886666666666788999999988876  46788888889998888  


Q ss_pred             CHHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCC
Q 009622          402 THEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN  479 (530)
Q Consensus       402 ~~~~~~~l~~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  479 (530)
                      +......+...++++.|+++|+  ..|.+++...+..+..++.+...           -.-++.+...-..+-.|++..|
T Consensus       579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-----------r~~miket~~~AylIDLMHDkN  647 (791)
T KOG1222|consen  579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-----------RRLMIKETALGAYLIDLMHDKN  647 (791)
T ss_pred             hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-----------HHHHHhhccchHHHHHHHhccc
Confidence            3355566668899999999997  45777877888888888877433           2455667777788999999999


Q ss_pred             HHHHHHHHHHHH
Q 009622          480 AEIYEKSVKLLE  491 (530)
Q Consensus       480 ~~v~~~a~~il~  491 (530)
                      .+|++-+...++
T Consensus       648 ~eiRkVCDn~Ld  659 (791)
T KOG1222|consen  648 AEIRKVCDNALD  659 (791)
T ss_pred             HHHHHHHHHHHH
Confidence            998776655444

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=3.8e-13  Score=126.39  Aligned_cols=361  Identities=15%  Similarity=0.144  Sum_probs=277.2

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.+.-+++.|..++.+........|.++.-.  .++...|.+.|++..|++++...+ ++++...+..+.|++. +...+
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr  379 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR  379 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence            4677888889888888887777777777443  567778889999999999999988 9999999999999999 67788


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..++..|.+|.+..+|.+..  -...|+..+..++.+.. .+..+....+++.+++.+....+..+-...+....|||.+
T Consensus       380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            89999999999999997643  33457778888877765 7888888999999999887777888878888888899998


Q ss_pred             CCCCChhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009622          233 KPQPPFDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG  310 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~l-l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~  310 (530)
                      ..+.........+..|... +++.|.-+    ...+.+++.+.......++  +.+..|...++.. ++.....++.+++
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLA  530 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHh
Confidence            8777766666667666543 44445433    2356677766543333344  3556677766654 4567888999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009622          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK  387 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~  387 (530)
                      |+.-..-...+.+-..+++|++-..|..+- ..++.-...-.++.++.. ......+..+++++.|+++|+..  |.+..
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV  609 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV  609 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence            998766677766778899999999998653 345667777777777654 35556667889999999999765  67788


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009622          388 KEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN  449 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~  449 (530)
                      ...++++..+..+  .-.++.++. ...-..|++++.+.+.+++..|-.+|..+..+.+.+..
T Consensus       610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK  670 (791)
T KOG1222|consen  610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK  670 (791)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence            8889999998886  344556664 45566799999999999999999999988877766543

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.66  E-value=1.4e-13  Score=127.52  Aligned_cols=401  Identities=12%  Similarity=0.073  Sum_probs=292.2

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC---C---CHHHHHHHHHHHHHHhc
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE---D---YPQLQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~---~---~~~i~~~a~~~L~~l~~  146 (530)
                      +.++.+.+...|++.++-.+.+++|.+++..+ ++.+..+.+.|+-..+++.|+.-   +   +.+.-.-+...|.|...
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            45677777788888999999999999998775 77888888999888888877642   2   23555667778999999


Q ss_pred             CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009622          147 GTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (530)
Q Consensus       147 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~  223 (530)
                      ++.+.+..+.+.|+++.|...+.-  .+.+..+.++....|+.+- ++...+...+......+++++....++.+...+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999999888754  6677778787777777642 2223445566677788888887777888999999


Q ss_pred             HHhhhhccCCCCCChhhhhchHHHHHHhhcC-CC----h---hHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhh
Q 009622          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND----D---EVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL  294 (530)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d----~---~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~lL  294 (530)
                      ..+...+.++.-.-.....|.+..+..+++. .+    .   .....++....-+..++++ .+.+...+ +++.+.+.+
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence            9999999887555555667888888888764 21    1   1222333334444444444 45555555 899999999


Q ss_pred             CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009622          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQAVIEAN  370 (530)
Q Consensus       295 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (530)
                      .+.+......+..++||+++.++ ....+++.+++..|+.++....    +-+++..++.+|.|++--- .....++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccc
Confidence            99999999999999999998555 4457888999999999996521    5577889999999998632 3445678899


Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhccCCCChH-HHHHHHHHHHHHHhhhhhhh
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPR-IVTVCLEGLENILKVGEAEK  448 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~-v~~~al~~l~~ll~~~~~~~  448 (530)
                      +.+.++..++...|.|...-+..+.-+..+. +.....+. ....++.|++--+++|.. +.--....+.-++++.-.. 
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k-  480 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK-  480 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh-
Confidence            9999999999999999888888887776642 11222333 224566777766776654 5555566666666654221 


Q ss_pred             hcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009622          449 NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  487 (530)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~  487 (530)
                              .+.-.+...||++....+....+-.++..|.
T Consensus       481 --------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEal  511 (604)
T KOG4500|consen  481 --------DVILTVPKSGGIKEKVSMFTKNHINMQNEAL  511 (604)
T ss_pred             --------hhHhhccccccHHHHHHHHHHhhHHHhHHHH
Confidence                    1345567788988888887777777766554

>PRK09687 putative lyase; Provisional

Probab=99.66  E-value=2.1e-14  Score=133.79  Aligned_cols=255  Identities=14%  Similarity=0.133  Sum_probs=201.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      -++.|..+|.+.+ ..++..|+++|..+..           ..+++.+..++.++++.+|..++|+|+.|-.... .   
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~---   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C---   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence            4778999999888 8999999999988764           2345778888899999999999999999853221 1   


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                        ....++.|..++..+++..++..++.+|.+++......    ...+++.+...+.+++..|+..++++|+.+..  + 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence              11256677777558889999999999999997654222    23356667777888899999999999987642  1 


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       277 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                              ..++.|+.+|.++++.++..|+.+||.+..+++         .+++.|+..|.+. ++.||..|.|+|+.+-
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    356889999999999999999999999943332         3567899999988 9999999999999973


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHH
Q 009622          357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLE  435 (530)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~  435 (530)
                      .  +         ..+|.|++.+.+++  ++..++.+|+++-..            ..++.|..+++ .+|+.++..+.+
T Consensus       221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~  275 (280)
T PRK09687        221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK------------TLLPVLDTLLYKFDDNEIITKAID  275 (280)
T ss_pred             C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHHH
Confidence            2  2         37899999998765  778899999988662            25888889886 789999999988


Q ss_pred             HHHH
Q 009622          436 GLEN  439 (530)
Q Consensus       436 ~l~~  439 (530)
                      ++..
T Consensus       276 a~~~  279 (280)
T PRK09687        276 KLKR  279 (280)
T ss_pred             HHhc
Confidence            8753

>PRK09687 putative lyase; Provisional

Probab=99.65  E-value=5.6e-14  Score=130.92  Aligned_cols=254  Identities=15%  Similarity=0.099  Sum_probs=199.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.|...|.+++..++..|+..|..+-.            ..+++.+..++.+++ +.+|..|+++|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            56788999999999999999999997742            235777888888888 99999999999998752211   


Q ss_pred             HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       154 ~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                         ...+++.|..+ +.++++.++..++.+|++++......     ...++..+...+ .+.+..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11246777766 57788999999999999996443311     111345555666 67789999999999976542 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                               ...++.|+.++.++++.|+..++.+|+.+....+         .+++.|+..|.+.++.++..|++.|+.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3578999999999999999999999999843333         3457788899999999999999999986


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchhHHHHHH
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA  391 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~  391 (530)
                      -.           ..+++.|+..|.++ +  ++..++.+|+++..  +         ..+|.|..++. .+|.+++..|.
T Consensus       220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence            43           24689999999976 4  78889999999854  2         26889999997 67999999999


Q ss_pred             HHHHH
Q 009622          392 WAISN  396 (530)
Q Consensus       392 ~aL~n  396 (530)
                      ++|..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            98853

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=3.2e-13  Score=121.42  Aligned_cols=311  Identities=12%  Similarity=0.132  Sum_probs=247.1

Q ss_pred             cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009622           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (530)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  161 (530)
                      .+++...-+.++.+|..+....  |   .+.+...+..++.+|... ++.++....+.++..-|..+..+++.+++.+++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            3566667777777777665432  2   234556688888888643 246788888888988888899999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHhhhCCCc---------hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          162 PIFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       162 ~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~---------~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +.+.+.|.. ....+.+...|++.-+..+++         .....+...|++..|+..+....++.+...++.+|..|+-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999988765 334677789999999987654         2345667778899999999777789999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCC-Chh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPA  305 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a  305 (530)
                      .+.........|.+..|+.++.+. +..   ....++..|..++.. ++....+++.|+.+.++.++..  .++.+...+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            776666677789999999999874 333   445677788887754 4556778999999999988643  578899999


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      +.+++-++-..++....+++.|+-...+..|+..+ ...++++|||.+.|++..+.++...++.. .++.|+......++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence            99999999999999999999999999999887543 56899999999999999888888777764 56788888888888


Q ss_pred             hHHHHHHHHHHHhhcC
Q 009622          385 DIKKEAAWAISNATSG  400 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~  400 (530)
                      .....|..||..+-..
T Consensus       430 tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGCD  445 (461)
T ss_pred             cHHHHHHHHHHhcCcc
Confidence            8888888888887653

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.60  E-value=1.6e-12  Score=127.09  Aligned_cols=405  Identities=16%  Similarity=0.085  Sum_probs=273.6

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      .++..+...+|+....|..-..+++.+. .++-..+++.|.++.++.++...+ .++.+.+.+.++.....+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            4455666778888888999999998876 555557899999999999998765 46777778888888888888889999


Q ss_pred             HhCCChHHHHHhhCCCC-HHHHHHHHHHHHhhhCCCchhhhhHh---hcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          156 IDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVL---SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       156 ~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~---~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      .+.+.++.|+++|.+++ ..+++.++.++.++...++. .+...   ...++..+..++ ..+.......-+...+++|.
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~-q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~  169 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKY-QDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSS  169 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccc-cccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccc
Confidence            99999999999999988 78999999999999876642 22221   222344444444 32445555566666666776


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH---HhccCChHHH----HHHHHhCcHH--HHHHhhCCCCchhH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTNDKI----QAVIEAGVFP--RLAEFLMHPSPSVL  302 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~---~l~~~~~~~~----~~~~~~~~i~--~L~~lL~~~~~~~~  302 (530)
                      ...........++...+.-++.......+..++.+++   .+..+++...    ....+.|+.+  .+..++++++...+
T Consensus       170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~  249 (678)
T KOG1293|consen  170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER  249 (678)
T ss_pred             cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence            6544445556777777777777777888889999998   6665554332    2233445555  34455555555555


Q ss_pred             HHHHHHHhHhhcCCc-------------hhhHHH--------------------------------------hhcCchHH
Q 009622          303 IPALRTVGNIVTGDD-------------MQTQCV--------------------------------------IEYQALPC  331 (530)
Q Consensus       303 ~~a~~~L~nl~~~~~-------------~~~~~~--------------------------------------~~~~~l~~  331 (530)
                      ..++.++-++..++.             .....+                                      .+...++.
T Consensus       250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~  329 (678)
T KOG1293|consen  250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT  329 (678)
T ss_pred             HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence            555555555543330             000000                                      00000111


Q ss_pred             HHHhh----------------------------------------------------cCCCchhHHHHHHHHHHHHhcCC
Q 009622          332 LLNLL----------------------------------------------------SGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       332 L~~lL----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                      +.+++                                                    ... +..++..||-++-+++..-
T Consensus       330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV  408 (678)
T KOG1293|consen  330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSV  408 (678)
T ss_pred             HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHH
Confidence            11111                                                    011 3344445555555554321


Q ss_pred             HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009622          360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN  439 (530)
Q Consensus       360 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~  439 (530)
                      ..-...+-...+..+|+.++..++..|+..++.+|+|++..-+ .....++..|+++.+..++...++.++..++|+|++
T Consensus       409 ~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~  487 (678)
T KOG1293|consen  409 SALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRH  487 (678)
T ss_pred             HHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            1111122245688999999999999999999999999998644 456778999999999999999999999999999999


Q ss_pred             HHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009622          440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       440 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                      ++-.+....          ...+-.-=+...|..+.++++..|++.+.+++..+..+
T Consensus       488 l~f~~de~~----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  488 LMFNCDEEE----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHhcchHHH----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            975543321          11222122356788899999999999999999988665

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.60  E-value=6.2e-14  Score=146.39  Aligned_cols=269  Identities=19%  Similarity=0.151  Sum_probs=223.6

Q ss_pred             HHH-HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-----------CHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009622           89 VQY-ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVI  156 (530)
Q Consensus        89 ~~~-~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-----------~~~i~~~a~~~L~~l~~~~~~~~~~~~  156 (530)
                      .++ .|+..|.++.-+  .+..+.|.+.|+++.+-+|+.-..           +-.++..|..+|+||+.++..++..+.
T Consensus       313 H~lcaA~~~lMK~SFD--EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC  390 (2195)
T KOG2122|consen  313 HQLCAALCTLMKLSFD--EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC  390 (2195)
T ss_pred             hhhHHHHHHHHHhhcc--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            344 677777776433  678888999999998888775321           246899999999999999988888877


Q ss_pred             h-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-
Q 009622          157 D-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (530)
Q Consensus       157 ~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-  233 (530)
                      . .|++..++..|.+...++.+..+.+|.||+-. +...+..+.+.|-+..|+.+......+..++.++.+||||+-+. 
T Consensus       391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence            5 59999999999998889999999999999943 23356777788989999888767778888999999999999877 


Q ss_pred             -CCCChhhhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009622          234 -PQPPFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       234 -~~~~~~~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a  305 (530)
                       ....+-.+.|++..|+.+|...    .-.|++.+-.+|.|++   ...+...+.+.+...+..|++.|++.+..+..++
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa  550 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA  550 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence             3334555789999999998643    3567778777777765   3456677889999999999999999999999999


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009622          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (530)
Q Consensus       306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (530)
                      |.+|+||+..+++..+.+.+.|+++.|..++++. +..+-.-++.+|.|+....+
T Consensus       551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence            9999999999999999999999999999999998 89999999999999987543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=5.3e-14  Score=136.85  Aligned_cols=340  Identities=17%  Similarity=0.188  Sum_probs=221.5

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHH-HH---HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-VI---RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~-~~---~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~  148 (530)
                      +.+|.+.++|.+++...+.-|..+|.++...+ .+..+. +.   -.-.+|.++++.++++ |.+|..|+.|+..+.-..
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence            46788888888999888888999999987442 111110 00   0236899999999998 999999999998877644


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      +.....-++ .+++.+..+-.+.++++|.+.+.+|..+....+. +-.-.-.++++.++... ++.|+++.-.||..+..
T Consensus       206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~t-qd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA  282 (885)
T ss_pred             cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence            433322222 3566777777779999999999999999865543 11111124566666666 77888999999999999


Q ss_pred             hccCCCCCC--hhhhhchHHHHHHhhcCCChhH--HH-------------------------------------------
Q 009622          229 FCRGKPQPP--FDQVSPALPALAHLIHSNDDEV--LT-------------------------------------------  261 (530)
Q Consensus       229 L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v--~~-------------------------------------------  261 (530)
                      ++..+-...  ......++|.|+.-+.-.+.++  ..                                           
T Consensus       283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            999862111  2334666777765443211110  00                                           


Q ss_pred             ---HHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622          262 ---DACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (530)
Q Consensus       262 ---~a~~~l~~l~~~~~~~~~~~~~~~~----i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (530)
                         ..-|-|...+...-+....+....+    +|.|-+.|.+++|.+++.++.++|.|+.|+-...-.- -..++|.|+.
T Consensus       363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-LpeLip~l~~  441 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-LPELIPFLLS  441 (885)
T ss_pred             ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-hHHHHHHHHH
Confidence               0012222222211111222333344    4555555677899999999999999998875332111 1247899999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009622          335 LLSGNYKKSIKKEACWTVSNITAG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      +|.+. .+-||.-+||+|+..+..  ..+ .+..+. .++..|++.+-+++.+|++.|+.|+..+-..+..+...++-  
T Consensus       442 ~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~--  516 (885)
T KOG2023|consen  442 LLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLE--  516 (885)
T ss_pred             HhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHH--
Confidence            99998 999999999999999762  111 212221 35666667677788999999999999999877766665542  


Q ss_pred             CChHHHHhccC
Q 009622          413 GCIKPLCDLLV  423 (530)
Q Consensus       413 ~~l~~L~~lL~  423 (530)
                      .++..|+..+.
T Consensus       517 ~IL~~l~~af~  527 (885)
T KOG2023|consen  517 YILDQLVFAFG  527 (885)
T ss_pred             HHHHHHHHHHH
Confidence            24444544443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.59  E-value=5e-13  Score=121.57  Aligned_cols=237  Identities=19%  Similarity=0.212  Sum_probs=185.8

Q ss_pred             hhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622          241 VSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       241 ~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  319 (530)
                      ..+-++.|+.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+.+
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            35667889999985 58999999999999987655 45577888999999999999999999999999999998765544


Q ss_pred             hHHHhhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622          320 TQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                      .  .++. .++.+.+...+ +.+..++..+..+|.|++..+..  +.++ .+.++.++.++..++..+|..++++|.||+
T Consensus        89 ~--~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   89 E--QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             H--HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3  2333 35555554433 33778999999999999865322  2333 247999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhhhhhhhcC---CCCchhhHHHhhhhc-cHHHHHH
Q 009622          399 SGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLG---NTDVNVFTQMIDDAE-GLEKIES  473 (530)
Q Consensus       399 ~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~l~~  473 (530)
                      .  ++...+.++..+++..++.+++.+ +.++...++..+.+|.....+.....   .-...++...|.+.+ .-++|..
T Consensus       163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            9  678899999999999999999876 66788889999999965544331111   113445567777777 7788999


Q ss_pred             HhcCCCHHHHHHH
Q 009622          474 LQTHDNAEIYEKS  486 (530)
Q Consensus       474 l~~~~~~~v~~~a  486 (530)
                      |..|++++|+.+.
T Consensus       241 l~~h~d~ev~~~v  253 (254)
T PF04826_consen  241 LANHPDPEVKEQV  253 (254)
T ss_pred             HHcCCCHHHhhhc
Confidence            9999999998764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=4.1e-12  Score=132.07  Aligned_cols=395  Identities=16%  Similarity=0.157  Sum_probs=271.5

Q ss_pred             CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh-
Q 009622           74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-  151 (530)
Q Consensus        74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~-  151 (530)
                      .++.|...+. +.|++++..|+..+|+++... -+.+..=.+..+-..|+..+.+...+.++...+.++..++...-+. 
T Consensus        37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~  115 (1075)
T KOG2171|consen   37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK  115 (1075)
T ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc
Confidence            4566666666 588999999999999998762 2222222334455566776666655899999999999999854222 


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      .     .++++.|.+..+++++..|+.|+.+|..+...-.. .+..+.  .+.+.+.+.+ .+++..++..++.++..++
T Consensus       116 W-----Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~-~d~s~~vr~~a~rA~~a~~  187 (1075)
T KOG2171|consen  116 W-----PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTM-TDPSSPVRVAAVRALGAFA  187 (1075)
T ss_pred             h-----HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhc-cCCcchHHHHHHHHHHHHH
Confidence            2     25678899999999999999999999999754332 111111  1333444455 4444449999999999888


Q ss_pred             cCCC--CCChhhhhchHHHHHHh----hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhH
Q 009622          231 RGKP--QPPFDQVSPALPALAHL----IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVL  302 (530)
Q Consensus       231 ~~~~--~~~~~~~~~~l~~L~~l----l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~  302 (530)
                      ...+  ..........+|.++..    +..+|.+....++.+|..++...+......+. .++...+.+..+.  +..+|
T Consensus       188 ~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R  266 (1075)
T KOG2171|consen  188 EYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIR  266 (1075)
T ss_pred             HHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHH
Confidence            7764  22233445666655544    44567777778888888887776655444433 3445555555443  45566


Q ss_pred             HHHHHHHhHhhcCCchhh---------------------------------------------HHHh------------h
Q 009622          303 IPALRTVGNIVTGDDMQT---------------------------------------------QCVI------------E  325 (530)
Q Consensus       303 ~~a~~~L~nl~~~~~~~~---------------------------------------------~~~~------------~  325 (530)
                      ..|+.+|..++.+.+...                                             ...+            -
T Consensus       267 ~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~  346 (1075)
T KOG2171|consen  267 HLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL  346 (1075)
T ss_pred             HHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh
Confidence            666666655543311000                                             0000            0


Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009622          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ  405 (530)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  405 (530)
                      .-+++.+..++.+. +..-|+.+..+|+-++.|+.+.+...++ .+++.++..+.+++++||..|+.|++.++..-.++.
T Consensus       347 p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  347 PPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence            12355666777888 9999999999999999999988877555 689999999999999999999999999999766554


Q ss_pred             HHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHH
Q 009622          406 IKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE  484 (530)
Q Consensus       406 ~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~  484 (530)
                      .++ ....+++.|+..+++. ++++...+..++.+++..+.+..      ..+|...+.+.    ++..|..+..+.+++
T Consensus       425 qk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~------l~pYLd~lm~~----~l~~L~~~~~~~v~e  493 (1075)
T KOG2171|consen  425 QKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI------LEPYLDGLMEK----KLLLLLQSSKPYVQE  493 (1075)
T ss_pred             HHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH------HHHHHHHHHHH----HHHHHhcCCchhHHH
Confidence            444 5557788888888765 56899999999999998776643      44566655422    677788888888887


Q ss_pred             HHHHHHH
Q 009622          485 KSVKLLE  491 (530)
Q Consensus       485 ~a~~il~  491 (530)
                      .+...|-
T Consensus       494 ~vvtaIa  500 (1075)
T KOG2171|consen  494 QAVTAIA  500 (1075)
T ss_pred             HHHHHHH
Confidence            7766554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.57  E-value=2.1e-12  Score=140.69  Aligned_cols=275  Identities=18%  Similarity=0.205  Sum_probs=218.6

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.|+..|.++++.++..|+..|..+..            .+.++.|+..|.+++ +.++..|+.+|..+....+   
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence            356888899999999999999999997642            236888999998887 9999999999988854211   


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                             ..+.|...|.++++.++..++.+|+.+....            ...++..+ .+++..++..++.+|..+-. 
T Consensus       685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence                   2356778888899999999999999874221            23466777 88899999999999987621 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                                  .+.|..++.++++.|+..++.+|+.+.....         ..++.|..++.++++.++..|+.+|+.+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        1346778889999999999999998865422         2367788999999999999999999998


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  392 (530)
                      ....          .+.+.+...|.++ ++.||..|+++|+.+...           ..++.|+.++.+++..||..|++
T Consensus       803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence            5421          1235678888888 999999999999987432           25689999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009622          393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE  438 (530)
Q Consensus       393 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~  438 (530)
                      +|..+.  +++.         ..+.|...+++.|+.|+..+..+|.
T Consensus       861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            999972  2332         3667778899999999999998875

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.54  E-value=1e-12  Score=119.57  Aligned_cols=196  Identities=18%  Similarity=0.233  Sum_probs=163.4

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009622          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~  192 (530)
                      .+.+-++.|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..+|..+++.+++.|+++|.|++.+.+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            4456689999999977669999999999999877 78899999999999999999999999999999999999988766 


Q ss_pred             hhhhHhhcCChHHHHHhhcCC-CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622          193 CRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      .+..+-.  .++.+++.+... -+..++..++.+|.+|+.....  .......+|.++.++.+++..++..++++|.+++
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            4444432  466777765333 4788999999999999876433  2334668999999999999999999999999999


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcC
Q 009622          272 DGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~  315 (530)
                      .++. ....++..+++..++.++... +..+...++..+.||..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            8765 456688889999999999886 577899999999999754

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=6.6e-12  Score=122.53  Aligned_cols=346  Identities=13%  Similarity=0.156  Sum_probs=232.3

Q ss_pred             hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---
Q 009622           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID---  157 (530)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~---  157 (530)
                      .+...++-++-..-..+..+++..+-..+     ..++|.|+++|.+++ ...++-|..+|..++.++.+..+.-+.   
T Consensus        98 ~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rp  171 (885)
T KOG2023|consen   98 GLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRP  171 (885)
T ss_pred             hccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCc
Confidence            34444444443333444445444333333     346999999999988 788999999999999987665554221   


Q ss_pred             -CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC
Q 009622          158 -HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP  236 (530)
Q Consensus       158 -~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  236 (530)
                       .-.+|.++++.+++++.+|..|+.++..+.-..+..-..-+ ..++..+..+. .+.++++++++|.++..|....+..
T Consensus       172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dk  249 (885)
T KOG2023|consen  172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDK  249 (885)
T ss_pred             hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHh
Confidence             13589999999999999999999999887755442111111 12455566655 8889999999999999999988877


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhCcHHHHHHhhCCC-----------------
Q 009622          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGVFPRLAEFLMHP-----------------  297 (530)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~i~~L~~lL~~~-----------------  297 (530)
                      -.....++++.++...++.|++|.-.||.....++..+.  +.....+. .++|.|+.-+..+                 
T Consensus       250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp  328 (885)
T KOG2023|consen  250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEEDESVP  328 (885)
T ss_pred             cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCccccccCC
Confidence            777889999999999999999999999999888887652  11121121 4455554433211                 


Q ss_pred             ---------------------------------------CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009622          298 ---------------------------------------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG  338 (530)
Q Consensus       298 ---------------------------------------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~  338 (530)
                                                             +|.+|..+..+|.-++.--.+   .++ .-++|.|-..|.+
T Consensus       329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL-~~l~PlLk~~L~~  404 (885)
T KOG2023|consen  329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD---ELL-PILLPLLKEHLSS  404 (885)
T ss_pred             chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH---HHH-HHHHHHHHHHcCc
Confidence                                                   134454444444444321111   111 1245555555666


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHH
Q 009622          339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI-KFLVIQGCIKP  417 (530)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~l~~  417 (530)
                      + +..+|+.+..+++.++.|.-...-.-+ ..++|.|+.+|.+..+-||.-.||+|+..+.....+.. +++.  .++..
T Consensus       405 ~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~  480 (885)
T KOG2023|consen  405 E-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEG  480 (885)
T ss_pred             c-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHH
Confidence            6 889999999999999986533221111 13789999999999999999999999988763321111 2221  24556


Q ss_pred             HHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          418 LCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       418 L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                      |...+-+++.+|++.|+.++..+-+.
T Consensus       481 ll~~llD~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  481 LLRRLLDSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            66666678899999999998877543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.50  E-value=1.5e-11  Score=133.98  Aligned_cols=277  Identities=18%  Similarity=0.209  Sum_probs=218.8

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009622          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (530)
Q Consensus       114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  193 (530)
                      ....++.|+..|.+++ +.+|..|+..|+.+..           .++++.|...|.++++.++..|+.+|+.+....+  
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence            3456789999999888 9999999999998753           2457889999999999999999999998853222  


Q ss_pred             hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009622          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (530)
                              ..+.+...| .+.++.++..++.+|..+....           ...++..|.++|+.++..++.+|+.+.. 
T Consensus       685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence                    124566777 6789999999999998865321           2356778899999999999999987621 


Q ss_pred             ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622          274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       274 ~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                                   .+.|..++.++++.+|..++.+|+.+.....         ..++.|..++.++ ++.+|..|+.+|+
T Consensus       744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg  800 (897)
T PRK13800        744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA  800 (897)
T ss_pred             -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence                         1336678999999999999999998865322         2367888999988 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  433 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a  433 (530)
                      ++....          .+++.++..+.++++.||..|+++|..+-..            ..++.|..+|++++..|+..+
T Consensus       801 ~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A  858 (897)
T PRK13800        801 ELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAA  858 (897)
T ss_pred             hcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHH
Confidence            985431          1335678889999999999999999987432            256899999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009622          434 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE  491 (530)
Q Consensus       434 l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~  491 (530)
                      +.+|..+ ...+                    .....|....++++.+|+..|...|+
T Consensus       859 ~~aL~~~-~~~~--------------------~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        859 VLALTRW-PGDP--------------------AARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHhcc-CCCH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            9999875 1111                    12467778888999999999988875

>PTZ00429 beta-adaptin; Provisional

Probab=99.49  E-value=2.4e-10  Score=119.28  Aligned_cols=262  Identities=14%  Similarity=0.093  Sum_probs=189.2

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.+++.+.++|.+++....-.+.+++..  .+..-.+    ++..|.+=+.+++ |.+|..|+++++++-.  ++..
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~  138 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL  138 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence            3678899999999999999988888888654  2322222    3677888888888 9999999999998876  4444


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+     ++.+.+.+.+.++-+|..|+.++.++....++   .+...+.++.|.+++ .+.++.+..+|+.+|..++..
T Consensus       139 e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        139 EYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence            433     56788889999999999999999999766653   344567888899988 889999999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                      .+. ........+..|+..+...++..+..++.+|....-.++...     ..++..+...|++.++.+...|++++.++
T Consensus       210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            543 234455666667777777788888888888866432222211     25778888999999999999999999998


Q ss_pred             hcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009622          313 VTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       313 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      ....+ .....+. ..+-+.++.++ ++ ++.++..+...|.-++...+.
T Consensus       284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~  330 (746)
T PTZ00429        284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPN  330 (746)
T ss_pred             cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHH
Confidence            76432 2111111 12234455553 44 677888877777666654443

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.49  E-value=1.6e-11  Score=120.29  Aligned_cols=370  Identities=14%  Similarity=0.098  Sum_probs=241.6

Q ss_pred             hcCCHHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009622           71 KLENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        71 ~~~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~  148 (530)
                      +.++++.++..++.+++  +.+...+..+....+++ ......+.+.+.++.|.+++++++...+....++++..+...+
T Consensus        49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~  127 (678)
T KOG1293|consen   49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS  127 (678)
T ss_pred             hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence            45789999999987664  45555666677777765 6778889999999999999998875688999999999999855


Q ss_pred             hhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009622          149 SEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (530)
Q Consensus       149 ~~~~~~~~--~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L  226 (530)
                      +..-..+.  ...+++.+..++..+.......-+....++++.. ..+..+...|+.+.+.-++ .......+..++.++
T Consensus       128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~  205 (678)
T KOG1293|consen  128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLCL  205 (678)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence            33322222  2345555555555233444444444455554443 4555566666666655555 556778888888888


Q ss_pred             h---hhccCCCCCChhh-----hhchHH--HHHHhhcCCChhHHHHHHHHHHHhccCCh----------------HHH--
Q 009622          227 S---NFCRGKPQPPFDQ-----VSPALP--ALAHLIHSNDDEVLTDACWALSYLSDGTN----------------DKI--  278 (530)
Q Consensus       227 ~---~L~~~~~~~~~~~-----~~~~l~--~L~~ll~~~d~~v~~~a~~~l~~l~~~~~----------------~~~--  278 (530)
                      +   ++..+++......     ..++.+  .+.+++++++...+..++.++.++...+.                +.+  
T Consensus       206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q  285 (678)
T KOG1293|consen  206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQ  285 (678)
T ss_pred             hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHH
Confidence            8   6666554332211     133333  23344444444444444444433332210                000  


Q ss_pred             ---------------------------------HHHHHhCcHHHHHHhh-------------------------------
Q 009622          279 ---------------------------------QAVIEAGVFPRLAEFL-------------------------------  294 (530)
Q Consensus       279 ---------------------------------~~~~~~~~i~~L~~lL-------------------------------  294 (530)
                                                       ....+...++.+.+++                               
T Consensus       286 ~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~  365 (678)
T KOG1293|consen  286 YNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGL  365 (678)
T ss_pred             HhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhc
Confidence                                             0000001111111111                               


Q ss_pred             ---------------------CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622          295 ---------------------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       295 ---------------------~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                                           -..+...+..||.++-+++..-......+-...+...|++++..+ +..|+..+..+|+
T Consensus       366 ~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~  444 (678)
T KOG1293|consen  366 EISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAIC  444 (678)
T ss_pred             chhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHH
Confidence                                 112334555566666555543332222223456888999999888 8999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  433 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a  433 (530)
                      |+.-...+....++..|+|..+..++.+.++.+|..+.|+|.++..+++.+....+...-....+..+.++++..|++.+
T Consensus       445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~  524 (678)
T KOG1293|consen  445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC  524 (678)
T ss_pred             HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence            99987667778899999999999999999999999999999999998776665555555556677888899999999999


Q ss_pred             HHHHHHHHhhh
Q 009622          434 LEGLENILKVG  444 (530)
Q Consensus       434 l~~l~~ll~~~  444 (530)
                      +..++|+....
T Consensus       525 fqllRNl~c~~  535 (678)
T KOG1293|consen  525 FQLLRNLTCNS  535 (678)
T ss_pred             HHHHHHhhcCc
Confidence            99999998653

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.47  E-value=1.3e-12  Score=106.88  Aligned_cols=119  Identities=35%  Similarity=0.611  Sum_probs=110.3

Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC
Q 009622          111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS  190 (530)
Q Consensus       111 ~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~  190 (530)
                      .+++.|+++.+++++.+++ +.++..++++|.+++..+++....+++.|+++.++.++.++++.++..++|+|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3567899999999999888 899999999999999988999999999999999999999999999999999999999988


Q ss_pred             chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       191 ~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+..+...|+++.+++++ .+.+..+++.++|+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77788888899999999999 66789999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.46  E-value=1.8e-12  Score=106.08  Aligned_cols=118  Identities=34%  Similarity=0.505  Sum_probs=110.3

Q ss_pred             HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH
Q 009622          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (530)
Q Consensus       281 ~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (530)
                      +++.|+++.+++++.+.++.++..+++++++++...+.....+++.|+++.+.+++.++ ++.++..++|+|+|++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998888888888999999999999998 99999999999999999887


Q ss_pred             HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .....+.+.|+++.|++++.+.+.+++..++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            888888899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PTZ00429 beta-adaptin; Provisional

Probab=99.45  E-value=9.5e-10  Score=114.89  Aligned_cols=294  Identities=16%  Similarity=0.100  Sum_probs=208.6

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.+..+.+.|.+.+...+..|++.+......+ .+..      .+.+.+++++.+.+ ..++.-....+.+++...++..
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            35677788888888888888888777665543 2222      24677788888888 8999999999999988666643


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      -.     +++.|.+=+.++++.+|-.|++++++|-..  ..-+.     .+.++.+.+ .+.++.+++.|+.++..+...
T Consensus       104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence            22     367888889999999999999999998421  12111     466677777 788999999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                      .+.  .....+.++.|..++.+.|+.|+.+|+.+|..+....+....  ...+.+..++..+...++..+...+.+|...
T Consensus       171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            543  223456788899999999999999999999999765543332  2345677788888777777777777777553


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHH
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAA  391 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  391 (530)
                      ...++...     ..++..+...|++. ++.|.-+|+.++.++... +++....+.. .+-+.|+.+ .++++++|.-++
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL  318 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC  318 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence            32222111     35677888889998 899999999999998754 2333222221 233455555 345567777777


Q ss_pred             HHHHHhhc
Q 009622          392 WAISNATS  399 (530)
Q Consensus       392 ~aL~nl~~  399 (530)
                      ..|.-++.
T Consensus       319 r~I~~i~~  326 (746)
T PTZ00429        319 KNIHALLV  326 (746)
T ss_pred             HHHHHHHH
Confidence            66655554

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.44  E-value=1.3e-11  Score=128.49  Aligned_cols=328  Identities=19%  Similarity=0.192  Sum_probs=235.4

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ...+.+++.+.+++...+..+--.+..+...  ++..-.+    ++..+.+=+.+++ +.++..|++++++++.  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            4788999999999999998888888877654  2332222    4667777788888 9999999999999985  6665


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+     ++.+.+++.++++.+|..|+.++..+....|..   +... .++.+.+++ .+.++.++.+|+.++..+ ..
T Consensus       113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            544     688999999999999999999999998665542   2222 578888888 888899999999999999 22


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                      .+..........+..|..++...++..+..++..+..++.........   ..+++.+..++.+.++.+...++.++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            111101344556666777777889999999999999988766544311   35678888888888888999999998877


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-cCchhHHHHHH
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-NAEFDIKKEAA  391 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~  391 (530)
                      .....      .-..+++.|..++.++ ++.+|..++..|..++...+..+.     ... ..+..+. +++..+|..++
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~-~~~~~l~~~~d~~Ir~~~l  325 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQS-LILFFLLYDDDPSIRKKAL  325 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THH-HHHHHHHCSSSHHHHHHHH
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhh-hhhheecCCCChhHHHHHH
Confidence            65333      2345678899999977 888999999999999876533322     122 2233444 67888999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHcCChHHHHhcc-CCCChHHHHHHHHHHHHHHhhh
Q 009622          392 WAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       392 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ..|.+++..   .....     +++.|...+ +..+++++..++..+..+....
T Consensus       326 ~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~  371 (526)
T PF01602_consen  326 DLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF  371 (526)
T ss_dssp             HHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence            988888863   33332     466666767 4447777777777777665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.43  E-value=2.4e-10  Score=110.76  Aligned_cols=322  Identities=13%  Similarity=0.159  Sum_probs=229.4

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhc-----CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          160 AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       160 ~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-----~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .+..++.+++. ...++.+.++..+..+..+.+.....+.+.     ....+++.++ ..+|.-+...++.+++.+....
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhcC
Confidence            45666777765 667888889999998888877555555443     4677888888 6778899999999999998765


Q ss_pred             CCCCh-hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHH
Q 009622          234 PQPPF-DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV  309 (530)
Q Consensus       234 ~~~~~-~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L  309 (530)
                      +.... ......++.+...+.+. +...+.-++.++..+...+..+ ..+.+.++++.|+++|+..  +..++..++.++
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            33221 12222444555666554 4566667778888888776654 5677888999999999764  457889999999


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHhCcHHHHHHHHhcC-
Q 009622          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN------REQIQAVIEANIIGPLVALLENA-  382 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~-  382 (530)
                      +-++...+ ........++++.+..+++......+-+-+..++.|+...+      ......+++.|+++.+-.+.... 
T Consensus       212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            98886444 44455577999999999998767889999999999998732      22344566777766544444332 


Q ss_pred             -chhHHHHHHHHH-------HHhhc------------------CC----CHHHHHHHHHcC--ChHHHHhccC-CCChHH
Q 009622          383 -EFDIKKEAAWAI-------SNATS------------------GG----THEQIKFLVIQG--CIKPLCDLLV-CPDPRI  429 (530)
Q Consensus       383 -~~~v~~~a~~aL-------~nl~~------------------~~----~~~~~~~l~~~~--~l~~L~~lL~-~~~~~v  429 (530)
                       |+++....-..-       ..++.                  +.    -.+....+.+.+  ++..|+++|+ +.|+.+
T Consensus       291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~  370 (429)
T cd00256         291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII  370 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence             555443322111       11110                  00    134555566554  4788999994 678888


Q ss_pred             HHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      +..|+.=++.+++..+.           .+..++..|+-+.+.+|++|+|++|+..|...++++..
T Consensus       371 laVAc~Dige~vr~~P~-----------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         371 LAVACHDIGEYVRHYPR-----------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             eehhhhhHHHHHHHCcc-----------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            88999999999988765           36778899999999999999999999999999998754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.43  E-value=1.8e-10  Score=120.00  Aligned_cols=326  Identities=20%  Similarity=0.226  Sum_probs=237.4

Q ss_pred             HHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622           77 VMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        77 ~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      ++.+.+.+.  +...+..++..+..+...+ .+ .     +.+.+.+++++.+.+ ...+.-+.-++..+...+++....
T Consensus         8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~-~-----~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l   79 (526)
T PF01602_consen    8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YD-I-----SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL   79 (526)
T ss_dssp             HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CC-C-----chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence            334444444  6777777877777665543 21 1     246888899999777 899999999999999877763333


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                           ++..+.+-|.++++.++..|+.++++++  .++....     .++.+.+++ .++++.+++.|+.++..+....|
T Consensus        80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p  146 (526)
T PF01602_consen   80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP  146 (526)
T ss_dssp             -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred             -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence                 3677888899999999999999999996  3322222     577788888 78889999999999999998754


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~  314 (530)
                      ...  ... .++.+..++.+.|+.++..|+.++..+ ...+.....+ -..++..|..++...++..+..+++++..++.
T Consensus       147 ~~~--~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  147 DLV--EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             CCH--HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HHH--HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            321  112 689999999999999999999999998 3333221111 22456667777788899999999999999987


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009622          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                      ..+.....   ..+++.+..++.+. ++.|..+|+.++..+....+      .-..+++.|..++.++++.++..++.+|
T Consensus       222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence            66544311   45678888999888 99999999999998865432      2235788999999998999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          395 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       395 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ..++... +..    +. .....+..+..++|..++..+++.+..++...
T Consensus       292 ~~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~  335 (526)
T PF01602_consen  292 SQLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES  335 (526)
T ss_dssp             HHHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred             HHhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence            9999864 221    22 22222333344888999999999999888654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.39  E-value=1.1e-13  Score=105.79  Aligned_cols=90  Identities=43%  Similarity=0.628  Sum_probs=60.3

Q ss_pred             CCCchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCcc-C-CC-CCchhhhcCCHHHHHHh
Q 009622            6 NSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAN-D-VN-APGTAKKLENLPVMVAG   81 (530)
Q Consensus         6 ~~~~~~~~~~~k~-~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~-~-~~-~~~~~~~~~~l~~l~~~   81 (530)
                      +...+.|++.||+ +++++|+|+||++..++|||+||++.|.|||++........+. . .. ..........++.++..
T Consensus         3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~   82 (97)
T PF01749_consen    3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG   82 (97)
T ss_dssp             ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred             ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence            4467899999999 5899999999999999999999999999999986543332111 1 00 11112222467889999


Q ss_pred             hcCCChHHHHHHHH
Q 009622           82 VWSNDSGVQYECTT   95 (530)
Q Consensus        82 l~s~~~~~~~~a~~   95 (530)
                      +.|+|+..|+.|..
T Consensus        83 v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   83 VNSDDPEVQLEATQ   96 (97)
T ss_dssp             HTSSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHhhC
Confidence            99999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.38  E-value=5.1e-10  Score=108.55  Aligned_cols=322  Identities=12%  Similarity=0.103  Sum_probs=226.4

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-----CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009622           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRS-----GVVPRFVEFLLREDYPQLQFEAAWALTNIASG  147 (530)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-----g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~  147 (530)
                      ....++..+.. ..+++....+..+..++... +.....+.+.     .....++.+|..++ .-++..|+.+|+.+...
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            45667777764 56777888888888888773 3334444443     46677888998877 79999999999999875


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHH
Q 009622          148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWT  225 (530)
Q Consensus       148 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~  225 (530)
                      .+.........-.++.|...+++ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +.+++..++.|
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            44321111111133455556655 346788889999999987776 8988888889999999996544 77999999999


Q ss_pred             hhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhhCCC-
Q 009622          226 LSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMHP-  297 (530)
Q Consensus       226 L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~i~~L~~lL~~~-  297 (530)
                      ++-|+...+........++++.++.+++.. .+.+..-++.++.|+....      ......+++.|+++ ++..|... 
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK  289 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence            999998865444444578999999999865 6778888899999998643      12334566667655 44555442 


Q ss_pred             --CchhHHHHHHHH--------hHhhc----------C----Cc-h--------hhHHHh--hcCchHHHHHhhcCCCch
Q 009622          298 --SPSVLIPALRTV--------GNIVT----------G----DD-M--------QTQCVI--EYQALPCLLNLLSGNYKK  342 (530)
Q Consensus       298 --~~~~~~~a~~~L--------~nl~~----------~----~~-~--------~~~~~~--~~~~l~~L~~lL~~~~~~  342 (530)
                        ++++... +..+        -.+++          |    ++ +        ....+-  +..++..|..+|..+.++
T Consensus       290 ~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         290 YDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence              3332221 1111        11111          0    11 1        111111  124688999999655488


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      .+..-||.=++.++...|.....+-+.|+=..+++++.++|++||.+|+.|+..+..+
T Consensus       369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            8899999999999998888887777889999999999999999999999999887653

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=1.5e-10  Score=115.14  Aligned_cols=367  Identities=17%  Similarity=0.208  Sum_probs=234.4

Q ss_pred             CCHHHHHHhhc----CCChH-HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhc
Q 009622           73 ENLPVMVAGVW----SNDSG-VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~----s~~~~-~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~-~~~~~i~~~a~~~L~~l~~  146 (530)
                      +.||.++..|.    .+.+. ++..++.++..++..- .|..-.--.+.++-.+++-+.. +.+..+|..|+.+|.|-..
T Consensus       125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe  203 (859)
T KOG1241|consen  125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE  203 (859)
T ss_pred             hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence            46677776665    34444 7778899999775442 2332111234556666665543 3347899999999998655


Q ss_pred             CChhh-HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009622          147 GTSEH-TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (530)
Q Consensus       147 ~~~~~-~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~  225 (530)
                      ....+ ....-.+-+++..+..-++++.+++..|+.+|..|..-...+-..-+.......-+..+ +++++++.-.++..
T Consensus       204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEF  282 (859)
T KOG1241|consen  204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEF  282 (859)
T ss_pred             HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHH
Confidence            22211 11122234566677777889999999999999999754333323323333344444555 68899999999999


Q ss_pred             hhhhccCCCC-------------C--Ch----hhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHH
Q 009622          226 LSNFCRGKPQ-------------P--PF----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQ  279 (530)
Q Consensus       226 L~~L~~~~~~-------------~--~~----~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~~~  279 (530)
                      .+++|...-.             +  ..    .....++|.|+.+|...       +......+..||.-++....+.  
T Consensus       283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~--  360 (859)
T KOG1241|consen  283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD--  360 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc--
Confidence            9998864311             1  11    12357788888888642       1234444555555544332211  


Q ss_pred             HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009622          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       280 ~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                       ++. .+++.+-+-+++++|.-+..|+.++|.+..+.+.....-+-.+++|.++.++.++ .-.++..++|+++.++.+.
T Consensus       361 -Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l  437 (859)
T KOG1241|consen  361 -IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFL  437 (859)
T ss_pred             -chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhc
Confidence             222 4566666677889999999999999999999887777777789999999999977 8889999999999999876


Q ss_pred             HHHHHHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH----HHH---cCChHHHHhccC---CCChH
Q 009622          360 REQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF----LVI---QGCIKPLCDLLV---CPDPR  428 (530)
Q Consensus       360 ~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~----l~~---~~~l~~L~~lL~---~~~~~  428 (530)
                      ++.+..-. -...++.++.-|.+ .|++..+++|++.+++.+........    ...   ..++..|+..-+   ..+..
T Consensus       438 ~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN  516 (859)
T KOG1241|consen  438 PEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN  516 (859)
T ss_pred             hhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence            65432222 23456666666653 68999999999999995321000000    000   011222322222   24556


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q 009622          429 IVTVCLEGLENILKVGEAE  447 (530)
Q Consensus       429 v~~~al~~l~~ll~~~~~~  447 (530)
                      ++..+-++|..+++..++.
T Consensus       517 LR~AAYeALmElIk~st~~  535 (859)
T KOG1241|consen  517 LRSAAYEALMELIKNSTDD  535 (859)
T ss_pred             HHHHHHHHHHHHHHcCcHH
Confidence            8888888888888776553

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=3.1e-09  Score=106.94  Aligned_cols=343  Identities=16%  Similarity=0.179  Sum_probs=242.6

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .+|.|+.+|+. .+.+++..|++++..++..- ++....+++.++||.|++-|..-...++.++++.+|-.|+...+   
T Consensus       212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---  287 (1051)
T KOG0168|consen  212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---  287 (1051)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---
Confidence            56888888885 56899999999999997653 45567788999999999877665558999999999999998544   


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+.++|++...+.+|.--+..+++.|+.+.+|+|..-+ +--+.+++  .+|.|..+| ...|....++++-++..++.
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD  364 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence            457789999999999988788899999999999995322 12233443  788888888 77888899999999999988


Q ss_pred             CC-CCCC---hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc----
Q 009622          232 GK-PQPP---FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP----  299 (530)
Q Consensus       232 ~~-~~~~---~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----  299 (530)
                      .. +.+.   .....+++....+++...+    ..+-.-.++.+..++.+.+.....+.+.++...|..+|.....    
T Consensus       365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na  444 (1051)
T KOG0168|consen  365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA  444 (1051)
T ss_pred             hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence            76 2222   2334677888888876543    2334456677778888877666667777877777777754210    


Q ss_pred             ----------hhHHHHHHHH------------------------------------------------hHhhc------C
Q 009622          300 ----------SVLIPALRTV------------------------------------------------GNIVT------G  315 (530)
Q Consensus       300 ----------~~~~~a~~~L------------------------------------------------~nl~~------~  315 (530)
                                .-.......+                                                ..+..      +
T Consensus       445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~  524 (1051)
T KOG0168|consen  445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG  524 (1051)
T ss_pred             ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence                      0000000000                                                01110      0


Q ss_pred             ---------CchhhHHHhh----------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHh-CcHHH
Q 009622          316 ---------DDMQTQCVIE----------YQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEA-NIIGP  374 (530)
Q Consensus       316 ---------~~~~~~~~~~----------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~i~~  374 (530)
                               +..-...++.          ..++|.|+++..+.-++.||..+..+|..+.. .+.+.+..++.. ++-..
T Consensus       525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~  604 (1051)
T KOG0168|consen  525 TSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSH  604 (1051)
T ss_pred             cchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHH
Confidence                     0000011111          24688888888877789999999999999887 577777777754 44445


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009622          375 LVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  423 (530)
Q Consensus       375 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  423 (530)
                      +-.++.+.+..|---|+...--|...-..-+...+...|++..+-.+..
T Consensus       605 lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  605 LAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            5567777888887777777777766555567778888898888777765

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.23  E-value=3.2e-10  Score=112.12  Aligned_cols=344  Identities=13%  Similarity=0.104  Sum_probs=222.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCC-hhh
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGT-SEH  151 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~-~~~  151 (530)
                      .+..++..++++.+..+...+..+.++.+.-+...+..-.+.-.+.-++..++.++ ...+......++.+-.... ...
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy  796 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY  796 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence            45666777778888788888887777776533333333333344455555554433 1233333443333322211 111


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh--hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD--LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~--~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      .     ..++..++..|.++++.++++++.+++.|+.--..|..  .+...|.  .|...| ....+++.-..+.++..+
T Consensus       797 l-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI  868 (1172)
T KOG0213|consen  797 L-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI  868 (1172)
T ss_pred             h-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence            1     13456778889999999999999999999743222211  2222232  355666 677889988888888777


Q ss_pred             ccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009622          230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~  308 (530)
                      +... -..-..-..+++|.|...|++....++++++..++.++...++.+..---..+.--|+++|...+..++..|..+
T Consensus       869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT  948 (1172)
T KOG0213|consen  869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT  948 (1172)
T ss_pred             HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7654 112223357899999999999999999999999999998776543322223455668888888899999999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      +|.|+..       +-...++..|+.-|+.. +...|.....+++-.+..+..       -.++|.|+.=...++..||.
T Consensus       949 fG~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen  949 FGYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred             hhHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHH
Confidence            9999852       22334566666666654 444444444444444332211       13788888877788899999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~  442 (530)
                      -++.+++.+......-..+++.  -+.+.|-+.|.+.|..-++.+..++..+.-
T Consensus      1014 GVLkalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence            9999999988744333333333  256667778888888888888888877753

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=5e-09  Score=104.51  Aligned_cols=357  Identities=14%  Similarity=0.075  Sum_probs=229.3

Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009622           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      +..|.+..|...-.|..++..++..+ -|.-.+   .++++.|+.....+....++..++.+|+.+|.+-....-.--.+
T Consensus        96 l~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n~w---p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN  171 (859)
T KOG1241|consen   96 LRTLGSPEPRRPSSAAQCVAAIACIE-LPQNQW---PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN  171 (859)
T ss_pred             HHHcCCCCCCccchHHHHHHHHHHhh-CchhhC---HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence            34566677777777888888888765 344333   35677777777766634589999999999998543321111124


Q ss_pred             CChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-C
Q 009622          159 GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-P  234 (530)
Q Consensus       159 g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~  234 (530)
                      .++..+++....  ++..+|-.|+.+|.|-..... .+....-..-++...+..- .++|.+++..|..||..+..-. .
T Consensus       172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~LyY~  250 (859)
T KOG1241|consen  172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMSLYYE  250 (859)
T ss_pred             HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHHHHHH
Confidence            567777777765  678899999999987542211 0111101111233333333 7789999999999999887643 2


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHH---HHHH---------------HhCcHHHHHHhhCC
Q 009622          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI---QAVI---------------EAGVFPRLAEFLMH  296 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~---~~~~---------------~~~~i~~L~~lL~~  296 (530)
                      .....+...+++.-+..+++++++|...++..-+++++..-+..   ....               -.+++|.|+++|.+
T Consensus       251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k  330 (859)
T KOG1241|consen  251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK  330 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence            22223334455666667788888887777766666653321100   0011               12677888888865


Q ss_pred             -------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 009622          297 -------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA  369 (530)
Q Consensus       297 -------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  369 (530)
                             ++|.....|--||.-++......   ++. .++|.+-.-++++ +.+-|..|+.+++.+..+.......-+-.
T Consensus       331 qde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~  405 (859)
T KOG1241|consen  331 QDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVI  405 (859)
T ss_pred             CCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHh
Confidence                   24667777777776666433322   122 4566666677777 88999999999999988755544444455


Q ss_pred             CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       370 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      +.+|.++.++.++...++..+.|+|+.++............-...+..+..-| ...|.+..+++|++..|.+....
T Consensus       406 qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~e  481 (859)
T KOG1241|consen  406 QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYE  481 (859)
T ss_pred             hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHH
Confidence            78999999999888899999999999999864311111111223334443333 35788999999999999976544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.17  E-value=1.1e-08  Score=95.76  Aligned_cols=323  Identities=12%  Similarity=0.078  Sum_probs=227.1

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHH-------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 009622           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA  145 (530)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-------~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~  145 (530)
                      .+..++.++.. ..++....++..+..+++..  .....++       ....-+.++.+|...+ .-+...+.+++..++
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence            56778888875 34666677888888888874  3322221       1234667888998888 788888999999988


Q ss_pred             cCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh-cCCCchhHHHHHH
Q 009622          146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT  223 (530)
Q Consensus       146 ~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll-~~~~~~~~~~~a~  223 (530)
                      .............-....|...+.+ .+......|+.+|..+....+ +|..+....++..++..+ ....+.+++...+
T Consensus       143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            7433221110000012344445555 667788889999999987776 788888888888888888 4556889999999


Q ss_pred             HHhhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHhCcHHHHHHhhCC
Q 009622          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLMH  296 (530)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~------~~~~~~~~~~~i~~L~~lL~~  296 (530)
                      .|++.|+.+++........+.++.|..+++.. .+.|..-++.++.|+....+      +....++..++.+.+-.+...
T Consensus       222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r  301 (442)
T KOG2759|consen  222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER  301 (442)
T ss_pred             HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence            99999998875555555678899999999865 67788889999999987764      333456665655544444332


Q ss_pred             --CCchhHHHHHHHH-------hHhhcC--------------Cc---------hhhHHHh--hcCchHHHHHhhcCCCch
Q 009622          297 --PSPSVLIPALRTV-------GNIVTG--------------DD---------MQTQCVI--EYQALPCLLNLLSGNYKK  342 (530)
Q Consensus       297 --~~~~~~~~a~~~L-------~nl~~~--------------~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~  342 (530)
                        +++++....-..-       -.+++.              +|         +....+.  +..++..|+++|..+.+|
T Consensus       302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp  381 (442)
T KOG2759|consen  302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP  381 (442)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence              2333322221111       111111              11         1111122  235799999999988679


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      .+..-||.-++.+..+.|+....+.+.|+=+.+++++.++|++||.+|+.|+..+..+
T Consensus       382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999888654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.12  E-value=5.9e-09  Score=97.54  Aligned_cols=281  Identities=14%  Similarity=0.091  Sum_probs=202.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..++..+...|.-+...+.+.+.++++.+ +.........=....|-..++++.+++-..-|++||-.+.. -++.+.
T Consensus       115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~  192 (442)
T KOG2759|consen  115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRY  192 (442)
T ss_pred             chHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhh
Confidence            4788899999999988888999999998764 22221111111233445556664446778889999999998 688888


Q ss_pred             HHHhCCChHHHHHhhC-C-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          154 VVIDHGAVPIFVKLLY-S-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~-~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      .++...++..++..+. . .+..++.+.+.+++-|+...+ ..+.+...+.++.|.+++..+..+.+.+-++.++.|++.
T Consensus       193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~  271 (442)
T KOG2759|consen  193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD  271 (442)
T ss_pred             eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8998888999999883 3 567899999999999987766 446667888999999999888899999999999999998


Q ss_pred             CCCCCCh------hhhhchHHHHHHhhcC---CChhHHHHHHHHHHHh-------ccCChH-------------------
Q 009622          232 GKPQPPF------DQVSPALPALAHLIHS---NDDEVLTDACWALSYL-------SDGTND-------------------  276 (530)
Q Consensus       232 ~~~~~~~------~~~~~~l~~L~~ll~~---~d~~v~~~a~~~l~~l-------~~~~~~-------------------  276 (530)
                      ..+....      .+...-++..++.|..   +|+++..+.-..-..|       +..++.                   
T Consensus       272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~  351 (442)
T KOG2759|consen  272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK  351 (442)
T ss_pred             cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence            8643221      1223333444444442   3666655533322222       111110                   


Q ss_pred             ----HHHHHHH--hCcHHHHHHhhCCCC-chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHH
Q 009622          277 ----KIQAVIE--AGVFPRLAEFLMHPS-PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC  349 (530)
Q Consensus       277 ----~~~~~~~--~~~i~~L~~lL~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~  349 (530)
                          +...+-+  ..++..|+.+|..++ +.+..-||.=+|..+...|+....+.+.|+=..++.++.++ +++||.+|.
T Consensus       352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~AL  430 (442)
T KOG2759|consen  352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHAL  430 (442)
T ss_pred             hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHH
Confidence                0111111  146788899998765 78889999999999999999988888999999999999999 999999999


Q ss_pred             HHHHHHhcC
Q 009622          350 WTVSNITAG  358 (530)
Q Consensus       350 ~~L~nl~~~  358 (530)
                      .++-.+..+
T Consensus       431 lavQ~lm~~  439 (442)
T KOG2759|consen  431 LAVQKLMVH  439 (442)
T ss_pred             HHHHHHHhh
Confidence            998777543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=5.1e-08  Score=90.28  Aligned_cols=190  Identities=21%  Similarity=0.240  Sum_probs=159.4

Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (530)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (530)
                      .+.+-++.++.-|..++..-+ +...+++.|++..++..+.+.+..+|..|++++|.++..++.....+++.|+++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            356667777777777776543 4566888899999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009622          335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      .+.++.+..+|..|..+++.+...++.....+...+....|.+++++  .+..++..|+..+..+..... .....+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence            99987567888999999999999999999999988889999999998  478899999999999988643 333444566


Q ss_pred             CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      +....+..+....+..+...++.++..++..-..
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            7777788888888888888888888877755443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=5.1e-07  Score=90.81  Aligned_cols=323  Identities=18%  Similarity=0.208  Sum_probs=237.7

Q ss_pred             CCHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCh-
Q 009622           73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTS-  149 (530)
Q Consensus        73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~-~~~~i~~~a~~~L~~l~~~~~-  149 (530)
                      +.++.|+.-+.+.. ++.+..|++.|..++.    .....+...| ++.|++.|..+ .++++...++..+.++..... 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            58899999888644 7889999999987753    3344555555 88888888764 358999999999999887442 


Q ss_pred             -----hh----------HHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhc-CChHHHHHhhc
Q 009622          150 -----EH----------TKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQ-GGLVPLLAQLN  211 (530)
Q Consensus       150 -----~~----------~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~-~~i~~Ll~ll~  211 (530)
                           +.          .+.++ ..+.|..|+..+...+-.+|..++..|.++.... ++.++.++.. -+|..++.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 11          22333 3578999999999999999999999999988654 4556655543 4789999999 


Q ss_pred             CCCchhHHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhcCC---C-hhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009622          212 GQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (530)
Q Consensus       212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (530)
                      .+..+.++..++..|..|.++.+.... .....++..|..++...   | .-|..+|+..+.|+..+...+.+.+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            777888999999999999998755443 44578888999998754   3 468889999999999988888888889999


Q ss_pred             HHHHHHhhCCC---C-----chh-----HHHHHHHHhHhhcCCc-----hhh-HHHhhcCchHHHHHhhcCCC-chhHHH
Q 009622          287 FPRLAEFLMHP---S-----PSV-----LIPALRTVGNIVTGDD-----MQT-QCVIEYQALPCLLNLLSGNY-KKSIKK  346 (530)
Q Consensus       287 i~~L~~lL~~~---~-----~~~-----~~~a~~~L~nl~~~~~-----~~~-~~~~~~~~l~~L~~lL~~~~-~~~v~~  346 (530)
                      +++|.++|...   +     |.-     ...++.++..++.-..     .+. ..+...+++..|..++.++. ..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            99999887642   2     222     2345566666654221     222 34557899999999998873 568999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC---------cHH-HHHHHHhcC-chhHHHHHHHHHHHhhcCC
Q 009622          347 EACWTVSNITAGNREQIQAVIEAN---------IIG-PLVALLENA-EFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~---------~i~-~L~~ll~~~-~~~v~~~a~~aL~nl~~~~  401 (530)
                      ++..+++++.+++...-..+.+..         .+- .++.+..+. .+..|..+.+++..+....
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            999999999998877666665321         111 222233333 6789999999999888754

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=4.5e-07  Score=90.31  Aligned_cols=217  Identities=18%  Similarity=0.157  Sum_probs=154.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .-+.++.+|.+.-|-++..|+-.+-++.-.  .|..-    ...+|.|++-|.+++ |.++..|+.+++.++..+|.+.-
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLk--YPeAl----r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLK--YPEAL----RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHh--hhHhH----hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc
Confidence            346777788888888888888888777654  22211    125888999888888 89999999999999987776643


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh--h
Q 009622          154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN--F  229 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~--L  229 (530)
                      .     +-|.+.++|..  .++ +.-..+..+++|+--.|.....     .+++|.+++....-.++...++.++..  +
T Consensus       218 ~-----LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  218 Q-----LAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSM  286 (877)
T ss_pred             c-----ccHHHHHHHhccCCCe-ehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence            3     34777777754  333 4455777888887666654443     688899988443344454444444432  2


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L  309 (530)
                      +.+ .........-++..|--++.++|+.+..-.+.+++.+....+..++.     .-+.++.+|.+.++++|..|+..+
T Consensus       287 s~g-~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl  360 (877)
T KOG1059|consen  287 SSG-MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLL  360 (877)
T ss_pred             ccC-CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHH
Confidence            222 12333445667788888899999999999999999999877765552     346788999999999999999999


Q ss_pred             hHhhc
Q 009622          310 GNIVT  314 (530)
Q Consensus       310 ~nl~~  314 (530)
                      --++.
T Consensus       361 ~gmVs  365 (877)
T KOG1059|consen  361 YGMVS  365 (877)
T ss_pred             HHHhh
Confidence            87774

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.05  E-value=1.2e-08  Score=97.89  Aligned_cols=224  Identities=18%  Similarity=0.228  Sum_probs=166.8

Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHH------hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC
Q 009622          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIE------AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ  327 (530)
Q Consensus       254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~------~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~  327 (530)
                      +.+++++.+++..+..+....+...+.+..      ......++.++.++++.+...|+.+++.++...+....... .+
T Consensus        68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~  146 (312)
T PF03224_consen   68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KE  146 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HH
Confidence            468899999999999998877766665554      23678888899999999999999999999987665543322 45


Q ss_pred             chHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH------hcC-chhHHHHHHHHHHHh
Q 009622          328 ALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL------ENA-EFDIKKEAAWAISNA  397 (530)
Q Consensus       328 ~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~~-~~~v~~~a~~aL~nl  397 (530)
                      +++.++.++.+..   +..++..|+.+++++.. .+..+..+.+.++++.+..++      .+. +..++.+++.++.-+
T Consensus       147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL  225 (312)
T PF03224_consen  147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL  225 (312)
T ss_dssp             HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence            5677777766421   55677899999999975 478888888999999999999      222 688999999999999


Q ss_pred             hcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009622          398 TSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT  476 (530)
Q Consensus       398 ~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  476 (530)
                      +.  +++..+.+...++++.|.++++ ....+++..++.++.|++......          +...+-.+|++..+..|+.
T Consensus       226 SF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~----------~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  226 SF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS----------NIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             TT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT----------HHHHHHHH-HHHHHHHHHS
T ss_pred             hc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH----------HHHHHHHccHHHHHHHHhc
Confidence            99  6688899999999999999987 456789999999999999776542          4677778999999999975


Q ss_pred             C--CCHHHHHHHHHHHH
Q 009622          477 H--DNAEIYEKSVKLLE  491 (530)
Q Consensus       477 ~--~~~~v~~~a~~il~  491 (530)
                      .  .|+|+.+--..+-+
T Consensus       294 rk~~Dedl~edl~~L~e  310 (312)
T PF03224_consen  294 RKWSDEDLTEDLEFLKE  310 (312)
T ss_dssp             S--SSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            4  88888877666544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.9e-08  Score=93.00  Aligned_cols=184  Identities=16%  Similarity=0.191  Sum_probs=154.5

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009622          130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (530)
Q Consensus       130 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l  209 (530)
                      +++-+..|+.-|..++. +-++...+++.|++..++.++.+.+..+|+.|+|+|+..+..+|..+..+++.|++..|+..
T Consensus        96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            47888889988988888 67888889999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009622          210 LNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (530)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (530)
                      +..+.+..++..|+++++.+.++.+.. ......+....|...+.+  .+...+..++..+.++..........+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            977778888999999999999998433 333445668899999998  56778888999999998776655555556677


Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622          287 FPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       287 i~~L~~lL~~~~~~~~~~a~~~L~nl~~  314 (530)
                      -..+..+....++.+...++.++..+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            6777777777788888888877766654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.01  E-value=5.7e-08  Score=94.01  Aligned_cols=360  Identities=13%  Similarity=0.063  Sum_probs=218.3

Q ss_pred             CCHHHHHHhhc----CCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcC-CHHHHH-HhhcCCCCHHHHHHHHHHHHHHh
Q 009622           73 ENLPVMVAGVW----SND-SGVQYECTTQFRKLLSIERSPPIEEVIRSG-VVPRFV-EFLLREDYPQLQFEAAWALTNIA  145 (530)
Q Consensus        73 ~~l~~l~~~l~----s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g-~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~  145 (530)
                      +.+|.+++.+.    .+. ......++..+...+-.. .| -..+..++ ++-.++ .-++.+.+..+|..|+.+|.+-+
T Consensus       129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl  206 (858)
T COG5215         129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL  206 (858)
T ss_pred             ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence            45666666554    333 346778888888876543 33 22222222 333333 34445445789999999998833


Q ss_pred             cCChhhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHH
Q 009622          146 SGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN  221 (530)
Q Consensus       146 ~~~~~~~~~~~~----~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~  221 (530)
                      ..   .+..+..    +-+++..+..-+.++.+++..+..+|..|..-...+-+..++..........+ ++++.++...
T Consensus       207 ~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~q  282 (858)
T COG5215         207 MF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQ  282 (858)
T ss_pred             HH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Confidence            21   1111111    23445566666778999999999999988644333333333332222233334 7889999999


Q ss_pred             HHHHhhhhccCCCCCC-----------------hhhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHH
Q 009622          222 ATWTLSNFCRGKPQPP-----------------FDQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDK  277 (530)
Q Consensus       222 a~~~L~~L~~~~~~~~-----------------~~~~~~~l~~L~~ll~~~-------d~~v~~~a~~~l~~l~~~~~~~  277 (530)
                      ++...+.+|.......                 .....+++|.|+++|...       |..+-..+..||--.+....+ 
T Consensus       283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-  361 (858)
T COG5215         283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-  361 (858)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence            9999988887641111                 112356899999999753       223444455555444332221 


Q ss_pred             HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       278 ~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                        .++. .++..+-+-+.+++|.-+..++.++|.+..+.......-+-...+|.+...+.++ .--++..++|+++.++.
T Consensus       362 --~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad  437 (858)
T COG5215         362 --KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD  437 (858)
T ss_pred             --HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence              1222 2555555667889999999999999999998877665666678899999999877 88899999999999987


Q ss_pred             CCHHHHHHHHHhCcHHHHHHHHh---cCchhHHHHHHHHHHHhhcCCCHHH--HHHHHHc---CChHHHHhcc--CCCCh
Q 009622          358 GNREQIQAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGGTHEQ--IKFLVIQ---GCIKPLCDLL--VCPDP  427 (530)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~nl~~~~~~~~--~~~l~~~---~~l~~L~~lL--~~~~~  427 (530)
                      +-+..+...   |-++..+....   .+.+.+...++|...|++.+-.+-.  ...++-.   .++..|+..-  ..++.
T Consensus       438 ~va~~i~p~---~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~  514 (858)
T COG5215         438 HVAMIISPC---GHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNES  514 (858)
T ss_pred             HHHHhcCcc---ccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccch
Confidence            544433322   22222222211   1357899999999999987542211  0111111   1122222211  24455


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 009622          428 RIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       428 ~v~~~al~~l~~ll~~~~~  446 (530)
                      ..+..+..+|..++.+++.
T Consensus       515 n~R~s~fsaLgtli~~~~d  533 (858)
T COG5215         515 NLRVSLFSALGTLILICPD  533 (858)
T ss_pred             hHHHHHHHHHHHHHhhcch
Confidence            6777788888888776654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=4.8e-08  Score=100.65  Aligned_cols=271  Identities=19%  Similarity=0.225  Sum_probs=209.2

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009622           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (530)
Q Consensus        87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  166 (530)
                      -+.|+.|........+..+.|+.+       +|.+++.|-+.   --|..|+..|+....-.+-....-..-|+.|++++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            356777888777777777677665       56666666543   34777999999999877887777788899999999


Q ss_pred             hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHHHHHHHHhhhhccCCCCCChh-hhhc
Q 009622          167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFD-QVSP  243 (530)
Q Consensus       167 lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~  243 (530)
                      +|+++..+++..-+.+.+.|..-++.|+..+++.++-..++..+..++  +++-+..++++|+.++++.+..... ...+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            999999999999999999988777889988888888888888884323  5678889999999999986444433 3466


Q ss_pred             hHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----Cch
Q 009622          244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDM  318 (530)
Q Consensus       244 ~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~----~~~  318 (530)
                      ++..++..+.++ .+-++..++-+|+.|-.+.+...-.-...+..+.|..+|.++-+++|..|+.+||.+..+    .++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            777888888775 678899999999999887766555556668889999999999999999999999999875    333


Q ss_pred             hhHHH------------hhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009622          319 QTQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE  368 (530)
Q Consensus       319 ~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (530)
                      +...+            ++..+.   -.++.+++.+ .+-++.+.+-+|+.++.+...+...+.-
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~  743 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG  743 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence            33222            222222   2566677777 9999999999999998877666554443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.5e-06  Score=85.94  Aligned_cols=324  Identities=15%  Similarity=0.158  Sum_probs=234.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCc---
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP---  191 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~---  191 (530)
                      .|+.|++-+.+..-++-|..|++.|-.++.   .++..+... +++.|++.|+.  .++++...++.++.++....+   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            588899888776557779999999999887   455555544 58889999976  678999999999999986542   


Q ss_pred             ---hh----------hh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcC
Q 009622          192 ---RC----------RD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS  254 (530)
Q Consensus       192 ---~~----------~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~  254 (530)
                         ..          .+ .+...+.|..++..+ ...|-.++.+++..+.++....|....   .....++..++.+|..
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               11          11 233456777888888 778899999999999999887654332   2336678889999988


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC----CchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009622          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (530)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~  330 (530)
                      .-+.|+-.++..|..++..+....+.+.=.+++.+|+.++...    ..-+...|+..|.|+...+......+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            8889999999999999988876655555568999999999764    235788999999999999888888888999999


Q ss_pred             HHHHhhcCCC--ch--------hH--HHHHHHHHHHHhc-CCH----HHH-HHHHHhCcHHHHHHHHhcC--chhHHHHH
Q 009622          331 CLLNLLSGNY--KK--------SI--KKEACWTVSNITA-GNR----EQI-QAVIEANIIGPLVALLENA--EFDIKKEA  390 (530)
Q Consensus       331 ~L~~lL~~~~--~~--------~v--~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a  390 (530)
                      .|.++|....  +.        ++  ...+..++.-+.. ++.    .+. ..+...+++..|+.++.++  ..+|+.++
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998875421  21        11  1345555666655 322    233 3455788999999998776  57899999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCC----------hHHHHhccCC-CChHHHHHHHHHHHHHHhhhhh
Q 009622          391 AWAISNATSGGTHEQIKFLVIQGC----------IKPLCDLLVC-PDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~----------l~~L~~lL~~-~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      ..++.+++.+.. ..-..+.+-.+          +-.+..+..+ ....++..++.++..++-....
T Consensus       338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~  403 (970)
T KOG0946|consen  338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD  403 (970)
T ss_pred             HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence            999999998753 33334433211          1122333333 3456777778887777655433

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.97  E-value=2.7e-08  Score=95.45  Aligned_cols=218  Identities=18%  Similarity=0.224  Sum_probs=157.5

Q ss_pred             CCCHHHHHHHHHHHHhhhCCCchhhhhHhh------cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009622          170 SPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (530)
Q Consensus       170 ~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  243 (530)
                      +++.++...++..+..+..+.+...+.+..      .....++++++ ..+|..+...++.++..+....+........+
T Consensus        68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~  146 (312)
T PF03224_consen   68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE  146 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence            467889999999999999888866666554      23678889977 77799999999999999999876666554466


Q ss_pred             hHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-----CC--CCchhHHHHHHHHhHh
Q 009622          244 ALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-----MH--PSPSVLIPALRTVGNI  312 (530)
Q Consensus       244 ~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-----~~--~~~~~~~~a~~~L~nl  312 (530)
                      .++.++..+.+    ++.+++.-++.++..+.... .....+.+.++++.+..++     .+  ....++..++.+++-+
T Consensus       147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL  225 (312)
T PF03224_consen  147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL  225 (312)
T ss_dssp             HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence            67777776664    45667788999999998654 4566788899999999999     22  3457888999999988


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcC--chhHHHH
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENA--EFDIKKE  389 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~--~~~v~~~  389 (530)
                      +. +++....+.+.++++.|..+++....+.|.+-+..++.|++...+. ....++..|+++.+-.+....  |+++...
T Consensus       226 SF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  226 SF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             TT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             hc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            76 6666677888889999999998876889999999999999985443 677777877777666655433  6666654


Q ss_pred             H
Q 009622          390 A  390 (530)
Q Consensus       390 a  390 (530)
                      .
T Consensus       305 l  305 (312)
T PF03224_consen  305 L  305 (312)
T ss_dssp             H
T ss_pred             H
Confidence            3

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.97  E-value=3.8e-09  Score=102.73  Aligned_cols=265  Identities=17%  Similarity=0.148  Sum_probs=182.9

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh--hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-
Q 009622          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-  236 (530)
Q Consensus       160 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~--~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-  236 (530)
                      ++..++.+|+++.+.++.+++.+.+.|+.--..|  -..+...|.  .|..-+ ....+++.-..+.+++.+....... 
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence            5677888999999999999999988886321111  122233332  244555 5668888888888887776554222 


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC
Q 009622          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~  316 (530)
                      -..-..+++|.|...|++....+..+.+..++.++...++.+..---..+.-.|++.|.+.+.+++..|..++|.|+.. 
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a-  760 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA-  760 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh-
Confidence            1223578999999999999999999999999999987765433222234556688888889999999999999999852 


Q ss_pred             chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHH
Q 009622          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN  396 (530)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n  396 (530)
                            +-...++..|+.-|+.. +...|.....+++-.+..+.       -..++|.|+.=...++..||.-.+.+++.
T Consensus       761 ------iGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLkam~f  826 (975)
T COG5181         761 ------IGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKAMCF  826 (975)
T ss_pred             ------cCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence                  22334566666666655 55455444444544443211       12477888877777888999999999999


Q ss_pred             hhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          397 ATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       397 l~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      +.........+++.  -+.+.|-+.|.+.|+.-+..+...+..+.-.+
T Consensus       827 mFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         827 MFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            88754444444443  24666777888899988888888888876443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.1e-06  Score=88.76  Aligned_cols=329  Identities=16%  Similarity=0.182  Sum_probs=224.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHH-----HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009622           88 GVQYECTTQFRKLLSIERSPPIEEVI-----RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (530)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~-----~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  162 (530)
                      +-...++.+|+++++.  +|....++     --|..+.+..++.....+.++..|+.++..++. +.++...++..|.+.
T Consensus      1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred             HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence            3455799999999987  44333332     236788888888776558999999999888777 789999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCC-Chhh
Q 009622          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP-PFDQ  240 (530)
Q Consensus       163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~-~~~~  240 (530)
                      .|+.+|.+. +..++.++.+|..+++... .....++.|++..++.++..+...+.+..+...+..+..++ ..+ ....
T Consensus      1817 ~LL~lLHS~-PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHSQ-PSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred             HHHHHHhcC-hHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence            999999764 6789999999999976665 66677889999999998877888999999999999998776 111 1111


Q ss_pred             hhchH------------HHHHHhhcC--CChhHH------HHHHHHHHHhc--------cCC------hHHH--------
Q 009622          241 VSPAL------------PALAHLIHS--NDDEVL------TDACWALSYLS--------DGT------NDKI--------  278 (530)
Q Consensus       241 ~~~~l------------~~L~~ll~~--~d~~v~------~~a~~~l~~l~--------~~~------~~~~--------  278 (530)
                      .-..+            ...++.+..  .++++.      ...-..+..+.        .++      ++..        
T Consensus      1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred             hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence            11222            333444442  233221      11111222221        000      0000        


Q ss_pred             ---------HHHH-H------------hCcHHHHHHhhCCCCch--hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622          279 ---------QAVI-E------------AGVFPRLAEFLMHPSPS--VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (530)
Q Consensus       279 ---------~~~~-~------------~~~i~~L~~lL~~~~~~--~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (530)
                               ..++ +            .++++.+.+++...++.  .......++-.+....+...+.+-..|.+|.++.
T Consensus      1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred             CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence                     0000 0            14456666666654432  2233334455566667777777777899999999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 009622          335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC  414 (530)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~  414 (530)
                      .+.+. ...+-+.|..+|..++.. .-++..+.....+..++..+... +..-.-|+.+|..+......+.....+..|.
T Consensus      2055 Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gL 2131 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGL 2131 (2235)
T ss_pred             HHHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCc
Confidence            99887 666778899999999764 45666677666777777777654 3455589999999988777777778888899


Q ss_pred             hHHHHhccCC
Q 009622          415 IKPLCDLLVC  424 (530)
Q Consensus       415 l~~L~~lL~~  424 (530)
                      ++.|+.+|++
T Consensus      2132 vpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2132 VPYLLQLLDS 2141 (2235)
T ss_pred             HHHHHHHhcc
Confidence            9999999975

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=7.5e-07  Score=89.97  Aligned_cols=296  Identities=15%  Similarity=0.167  Sum_probs=178.7

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      ..+.+-|++++.-++-.|+.+|.++++.   +.+..     +.|.+.+++++.+ +-++..|+.|...+....++....+
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i~s~---Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f  180 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF  180 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhccCCH---HHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence            4445566778888888888888888654   22322     4777788888877 8889888888888887666655544


Q ss_pred             H--------h--CCC----hHHHHHhhCCCC------HHHHHHHHHHHHhhhCCC--chh-----hhhHhhcCChHHHHH
Q 009622          156 I--------D--HGA----VPIFVKLLYSPS------DDVREQAVWALGNIAGDS--PRC-----RDLVLSQGGLVPLLA  208 (530)
Q Consensus       156 ~--------~--~g~----i~~L~~lL~~~~------~~~~~~a~~~L~nl~~~~--~~~-----~~~i~~~~~i~~Ll~  208 (530)
                      +        +  .|+    +..+..+++...      ..+...-+..|.++....  +++     .+.+++-. +-.+++
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLr  259 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLR  259 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHH
Confidence            2        1  343    344444444311      234455566677766432  111     11111111 112334


Q ss_pred             hhcCCCchhHHHHHHHHhhhhccCCCCCC---hhhh-----------------hchHHHHHHhhcCCChhHHHHHHHHHH
Q 009622          209 QLNGQPKLSMLRNATWTLSNFCRGKPQPP---FDQV-----------------SPALPALAHLIHSNDDEVLTDACWALS  268 (530)
Q Consensus       209 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~-----------------~~~l~~L~~ll~~~d~~v~~~a~~~l~  268 (530)
                      +| ...+.+........|..+++.-....   ....                 .-++..|-++|.+.|..++.-++..|.
T Consensus       260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~  338 (866)
T KOG1062|consen  260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL  338 (866)
T ss_pred             Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence            44 44566666666666666666542111   1111                 223455666666777777777777777


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH
Q 009622          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (530)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  348 (530)
                      .+...++...+...     ..++++|++.+..++..|+..+-.|...+.  ...     ++..|+..|... +++++...
T Consensus       339 r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~  405 (866)
T KOG1062|consen  339 RVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADI  405 (866)
T ss_pred             hhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHH
Confidence            76666554433222     468889999999999999999988885333  222     366788999888 99999998


Q ss_pred             HHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009622          349 CWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       349 ~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      +.-+..++. ..|+...      .|..+.+.+...-.-|+..+...+..++..+
T Consensus       406 as~I~~laEkfaP~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~  453 (866)
T KOG1062|consen  406 ASKIAELAEKFAPDKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANA  453 (866)
T ss_pred             HHHHHHHHHhcCCcchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence            888888886 3343332      2345555555554455555555555555544

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=1.8e-06  Score=87.38  Aligned_cols=342  Identities=17%  Similarity=0.174  Sum_probs=232.9

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.+++.....|-+.....--.+.+.+...  |...    .+++..+++=..+++ +.+|..|++.++.+.-  +...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence            46799999999999888877777888877653  3322    245777777777777 9999999988877665  2222


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      .     .+...+...+++.++.++..+..+..++-..++   +.+...|++..|-.++ .+.++.+..+|+.+|..+...
T Consensus       120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            2     235788999999999999999999988865544   4677889999999999 688999999999999999988


Q ss_pred             CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      .+. .........+..++..+...++.-+..++.++.+-.-.++....     .++.++...|.+.+..+...+...+..
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            754 33334455555566666555666666666666655443332222     456778888889888888888888877


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ-------------------------AV  366 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l  366 (530)
                      +........ ..+-..+-+.++.++.+. . .++.-|..-+.-+....+....                         .+
T Consensus       266 ~~~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            775444422 222334556666666655 3 5554444444333333332110                         00


Q ss_pred             H-HhC---cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622          367 I-EAN---IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       367 ~-~~~---~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~  442 (530)
                      . +.+   ++..|......-|.+.-+++++|+++++......       ++++..|++++..+-..++..+...+..++.
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            1 111   3333444444457888999999999998854221       5789999999997777777778888888988


Q ss_pred             hhhhh
Q 009622          443 VGEAE  447 (530)
Q Consensus       443 ~~~~~  447 (530)
                      ..++.
T Consensus       416 kyP~~  420 (734)
T KOG1061|consen  416 KYPNK  420 (734)
T ss_pred             cCCCc
Confidence            77664

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.83  E-value=2.9e-06  Score=82.53  Aligned_cols=351  Identities=13%  Similarity=0.027  Sum_probs=213.6

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009622           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (530)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  157 (530)
                      .+..|.+..|..-..|+..+..++..+ -|+-.+   .|++..++.....+.....+.+++.++++++.....  +.++.
T Consensus        99 al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~~w---p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li~  172 (858)
T COG5215          99 ALRALKSPEPRFCTMAAQLLAAIARME-LPNSLW---PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLIQ  172 (858)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHHHhh-Cccccc---hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHHH
Confidence            345677888888888888888887654 333322   355666677666665568899999999999984322  22332


Q ss_pred             -C-CChHHHHHh-hCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcC----ChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          158 -H-GAVPIFVKL-LYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG----GLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       158 -~-g~i~~L~~l-L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~----~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                       + .++-.++.. ++. ++..+|-.++.+|.+-+..   .+..+-..+    +++..+..- +.++.+++..+..||..+
T Consensus       173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~ki  248 (858)
T COG5215         173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKI  248 (858)
T ss_pred             HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHH
Confidence             2 333344443 333 6678899999998873211   111111111    233333333 678999999999999887


Q ss_pred             ccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH---HHH-------------HHHhCcHHHHHH
Q 009622          230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK---IQA-------------VIEAGVFPRLAE  292 (530)
Q Consensus       230 ~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~---~~~-------------~~~~~~i~~L~~  292 (530)
                      ..-. ...+..+..-+.......++++++++...+...-+.++...-+.   .+.             -.-.+++|.|++
T Consensus       249 m~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~  328 (858)
T COG5215         249 MMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLS  328 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHH
Confidence            6543 22222223334445567788888888777665555555321110   000             011257899999


Q ss_pred             hhCC-------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622          293 FLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       293 lL~~-------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                      +|..       ++|.+-..|..||--.+.....   .+++ .++..+-.-+.++ +..-|..|..+++.+..+..+....
T Consensus       329 LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT  403 (858)
T COG5215         329 LLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLT  403 (858)
T ss_pred             HHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHH
Confidence            9875       3566766666666555543221   2222 2555566667777 8888999999999998865444433


Q ss_pred             HHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh-ccC--CCChHHHHHHHHHHHHHHh
Q 009622          366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD-LLV--CPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       366 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~-lL~--~~~~~v~~~al~~l~~ll~  442 (530)
                      -+-...+|.+...+.++...++..++|+++.++.+-    ...+-..|-+...+. ++-  ...|.+...+.|...++..
T Consensus       404 ~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~  479 (858)
T COG5215         404 KIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD  479 (858)
T ss_pred             hhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence            333467888888888778899999999999998642    111111222222222 121  3466777888888888876


Q ss_pred             hhhhh
Q 009622          443 VGEAE  447 (530)
Q Consensus       443 ~~~~~  447 (530)
                      +..+.
T Consensus       480 h~a~a  484 (858)
T COG5215         480 HIAKA  484 (858)
T ss_pred             hhhhh
Confidence            65543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=8e-06  Score=82.77  Aligned_cols=352  Identities=16%  Similarity=0.157  Sum_probs=206.3

Q ss_pred             CCCchHHhhhhhhHHHHHHHHhhh--HHHHhhh-hccc---cCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHHHHH
Q 009622           19 AVDADEGRRRREDNMVEIRKNKRE--ESLQKKR-REGL---QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYE   92 (530)
Q Consensus        19 ~~~~~~~~~~r~~~~~~lRk~~~~--~~l~~~R-~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~   92 (530)
                      .++..|.|+--......||+.-|+  ....+|| ++.-   -+..+.|.         -++.++ -++++.|++--....
T Consensus        20 akT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypa---------hFGqie-clKLias~~f~dKRi   89 (866)
T KOG1062|consen   20 AKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPA---------HFGQIE-CLKLIASDNFLDKRI   89 (866)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCc---------cchhhH-HHHHhcCCCchHHHH
Confidence            456667777666777889988888  4444444 3210   01111111         133333 355677766544444


Q ss_pred             HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC
Q 009622           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS  172 (530)
Q Consensus        93 a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~  172 (530)
                      +--+..-++..  ......+    +...+.+=|++++ .-+.-.|+.+|++++.  ++....+     .|-+-+++++.+
T Consensus        90 GYLaamLlLdE--~qdvllL----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Emardl-----apeVe~Ll~~~~  155 (866)
T KOG1062|consen   90 GYLAAMLLLDE--RQDLLLL----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARDL-----APEVERLLQHRD  155 (866)
T ss_pred             HHHHHHHHhcc--chHHHHH----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHHh-----hHHHHHHHhCCC
Confidence            44333334433  2222222    2344566667777 7888899999999997  6666554     577888999999


Q ss_pred             HHHHHHHHHHHHhhhCCCchhhhhHh--------h--cC----ChHHHHHhhcCCC-----chhHHHHHHHHhhhhccCC
Q 009622          173 DDVREQAVWALGNIAGDSPRCRDLVL--------S--QG----GLVPLLAQLNGQP-----KLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       173 ~~~~~~a~~~L~nl~~~~~~~~~~i~--------~--~~----~i~~Ll~ll~~~~-----~~~~~~~a~~~L~~L~~~~  233 (530)
                      +.++..|+.|...+..-.|..-..+.        +  .|    .+..+..++..++     -..+....+..|.++....
T Consensus       156 ~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~  235 (866)
T KOG1062|consen  156 PYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSG  235 (866)
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999876665433322        2  22    3455556664322     1335666777888887765


Q ss_pred             CCCChh---hhhchHH----HHHHhhcCCChhHHHHHHHHHHHhccCChHHHH--HHHHhCcHHHHHHhhCCCCchhHHH
Q 009622          234 PQPPFD---QVSPALP----ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ--AVIEAGVFPRLAEFLMHPSPSVLIP  304 (530)
Q Consensus       234 ~~~~~~---~~~~~l~----~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~L~~lL~~~~~~~~~~  304 (530)
                      -.+...   ...+.++    .++.+|...|++.-......|..++.+.+....  ..+-...+..++.+.  ++..++..
T Consensus       236 yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~Lrvl  313 (866)
T KOG1062|consen  236 YSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVL  313 (866)
T ss_pred             CCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHH
Confidence            222221   1233333    345566677777777777777777755432211  011111222222222  23445556


Q ss_pred             HHHHHhHhhcCCchhhHHHhhc--------------CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 009622          305 ALRTVGNIVTGDDMQTQCVIEY--------------QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN  370 (530)
Q Consensus       305 a~~~L~nl~~~~~~~~~~~~~~--------------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  370 (530)
                      |+.+||.+..+.+....++.-.              .-=..++.+|+++ |..+|+.|.-.+-.+...  .++..     
T Consensus       314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----  385 (866)
T KOG1062|consen  314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----  385 (866)
T ss_pred             HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----
Confidence            6666666555544433332110              1123577888888 888999998888777653  23333     


Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHE  404 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~  404 (530)
                      ++..|+..|...+++++...+.-+..++..-.|+
T Consensus       386 mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~  419 (866)
T KOG1062|consen  386 MVKELLEFLESSDEDFKADIASKIAELAEKFAPD  419 (866)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence            4567888888889999999999999888755443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=2.6e-05  Score=77.41  Aligned_cols=314  Identities=16%  Similarity=0.134  Sum_probs=210.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      ++..+..-++.+. +.+|.....||.-+........    ...+.+.+.+++......-+..+.+.++.+..+..  ...
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence            4777888888888 8999999988877665221111    11345778888888888888999999998876654  345


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-  275 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-  275 (530)
                      +.+.+++..+.+.+.+..+..-++.+..+.-..+..-..........++|.++..+.+..+.++..+..+...+...-+ 
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            5677788888888843333333333444444444433333344456677777777777788888887776655543322 


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       276 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                      ....     .+++.++.-+....|.....++..++.++...+.+.. ..-..++|.+.+.|.+. ++++|+.+..++.++
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            1112     3445555555555899999999999999987776653 34458999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHH------------------------------HhC----cHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          356 TA--GNREQIQAVI------------------------------EAN----IIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       356 ~~--~~~~~~~~l~------------------------------~~~----~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      +.  .+++ ++.++                              +..    ++|.|.+-+...+..+++.++..+.|++.
T Consensus       323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~  401 (569)
T KOG1242|consen  323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK  401 (569)
T ss_pred             HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence            87  3433 33221                              001    23444444445567788999999999987


Q ss_pred             CC-CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          400 GG-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       400 ~~-~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      -- ++.....++. .+++.|-..+....|+++..+..+|..+++....
T Consensus       402 LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  402 LVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             hhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence            54 3333332221 3566666666677999999999999888875544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=1.4e-06  Score=84.69  Aligned_cols=321  Identities=16%  Similarity=0.090  Sum_probs=201.0

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009622          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (530)
Q Consensus       114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  193 (530)
                      -.++++.++..+.+++ ..+++.|+..|.|++....... ...-..+...+.++...++..++. ++..+-.+..+-..-
T Consensus        82 ~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte  158 (675)
T KOG0212|consen   82 LEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTE  158 (675)
T ss_pred             HHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccc
Confidence            3578999999999988 8999999999999987321111 111123445566666555555544 455555554332221


Q ss_pred             hh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc-
Q 009622          194 RD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS-  271 (530)
Q Consensus       194 ~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~-  271 (530)
                      ++ .+--.++++.|-..+ ...++..+...+.-+..|-..++..-......+++.|..+|..+.++|+.-+=.+++.+. 
T Consensus       159 ~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  159 SASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            22 111122333333344 556788888877777766555333333455778889999999888888865555554433 


Q ss_pred             --cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHHH
Q 009622          272 --DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEA  348 (530)
Q Consensus       272 --~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a  348 (530)
                        ..++...   --...++.++..+.++++.++..|+.-+..++.-.+... ...-+|++..+++++.+. ++ .++..+
T Consensus       238 eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~a  312 (675)
T KOG0212|consen  238 EIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEYA  312 (675)
T ss_pred             HHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHHH
Confidence              1122111   112567888888999999999988877777765444332 334568888899999887 44 455544


Q ss_pred             HHHHHHHhc--CCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622          349 CWTVSNITA--GNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP  425 (530)
Q Consensus       349 ~~~L~nl~~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~  425 (530)
                      ..+-+.+..  +.+..... ++ -.++..|...+.++..+.|..++.-+..+-.....+...  ....+...|..-|++.
T Consensus       313 ~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLsd~  389 (675)
T KOG0212|consen  313 QMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLSDR  389 (675)
T ss_pred             HHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhcCc
Confidence            433222222  11111111 33 236788888899888899999987777776643322211  2346788888889999


Q ss_pred             ChHHHHHHHHHHHHHHhhhhh
Q 009622          426 DPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       426 ~~~v~~~al~~l~~ll~~~~~  446 (530)
                      +..++..++..+..++...+.
T Consensus       390 sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  390 SDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             hhHHHHHHHHHHHHHhcCccc
Confidence            999999999999999876543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.72  E-value=1.6e-06  Score=82.21  Aligned_cols=271  Identities=17%  Similarity=0.174  Sum_probs=185.8

Q ss_pred             HHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhh
Q 009622          110 EEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIA  187 (530)
Q Consensus       110 ~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~  187 (530)
                      +.+...|.+..|++++..++ ...++.+|.+.|-.+..  .++++.++..| +..++.+.+. ..++.....+.+|.++.
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            44555788999999999887 23579999999999887  77888888776 5555555444 56889999999999999


Q ss_pred             CCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC--CChhhhhchHHHHHHhhcCCChhHHHHHHH
Q 009622          188 GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACW  265 (530)
Q Consensus       188 ~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~  265 (530)
                      .++.+....++..|++..++-.. ...++.+.+.+..+|.|++.+...  ........+-.-|..+-.+.|+-.+.++|.
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence            99988888899999999988888 677899999999999999877522  223334555566777777778888999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH
Q 009622          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK  345 (530)
Q Consensus       266 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  345 (530)
                      +++.++.+.+- ...+.++|-+..+-.++.+-++.....   --...+.+.        ...-++.|+.+|++. .-+.+
T Consensus       330 AV~vlat~KE~-E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EAq  396 (832)
T KOG3678|consen  330 AVAVLATNKEV-EREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEAQ  396 (832)
T ss_pred             HHhhhhhhhhh-hHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhhh
Confidence            99999876543 344666777766666666555432111   011111111        123577888999876 55555


Q ss_pred             HHHHHHHHHHhcC-C-HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          346 KEACWTVSNITAG-N-REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       346 ~~a~~~L~nl~~~-~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      ..+++-++.=+.- + .....-+-+-|.|..|-++..+++.--.+-|..+|.-+
T Consensus       397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            5555544433321 1 11123344678899999998877654444444454443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.72  E-value=1.4e-05  Score=82.30  Aligned_cols=410  Identities=16%  Similarity=0.173  Sum_probs=238.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-------------------------------------C
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-------------------------------------G  116 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-------------------------------------g  116 (530)
                      .+..+++.|...++++|..|++++.-+.+.-+...++.+++.                                     .
T Consensus        48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t  127 (1233)
T KOG1824|consen   48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT  127 (1233)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence            567788888899999999999999966654323333333221                                     1


Q ss_pred             CHH----HHHHhhcC-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc
Q 009622          117 VVP----RFVEFLLR-EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (530)
Q Consensus       117 ~v~----~Lv~ll~~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~  191 (530)
                      +.+    .|.+.+.. .+...++.+++.+++.+.....+.... ...+++..++..+.++-..++..++.+|+.++...+
T Consensus       128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~  206 (1233)
T KOG1824|consen  128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN  206 (1233)
T ss_pred             HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence            111    12221111 111235555555555444422211111 223445555556667778899999999999997765


Q ss_pred             hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh---cCCChhHHHHHHHHHH
Q 009622          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALS  268 (530)
Q Consensus       192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll---~~~d~~v~~~a~~~l~  268 (530)
                      ..    ...+.+..+++-|.........+....+|..+|+....+.-.....++|.+.+..   +.+|+++++.++.++.
T Consensus       207 ~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale  282 (1233)
T KOG1824|consen  207 RD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE  282 (1233)
T ss_pred             HH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence            32    2234778888888677788888888999999998876555566678889999888   6778999999999998


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCCC----------------------------------CchhHHHHHHHHhHhhc
Q 009622          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHP----------------------------------SPSVLIPALRTVGNIVT  314 (530)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----------------------------------~~~~~~~a~~~L~nl~~  314 (530)
                      .+....+..+-..+. .++..+++.+..+                                  +|.+|+.|+.++..+..
T Consensus       283 ~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is  361 (1233)
T KOG1824|consen  283 SFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS  361 (1233)
T ss_pred             HHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence            877666554443332 3444455444320                                  35799999999988765


Q ss_pred             CCchhhHHH------------------hhcCchHHHHHhhcCCC-------c-------------hhHHHHHHHHHHHHh
Q 009622          315 GDDMQTQCV------------------IEYQALPCLLNLLSGNY-------K-------------KSIKKEACWTVSNIT  356 (530)
Q Consensus       315 ~~~~~~~~~------------------~~~~~l~~L~~lL~~~~-------~-------------~~v~~~a~~~L~nl~  356 (530)
                      ...+....+                  +...++..++.+|.+..       +             ..++.....++..+.
T Consensus       362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~  441 (1233)
T KOG1824|consen  362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ  441 (1233)
T ss_pred             ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH
Confidence            433222111                  11223344444443210       0             011111111111111


Q ss_pred             c----CCHHHH-------HHHH--------H--hCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009622          357 A----GNREQI-------QAVI--------E--ANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQG  413 (530)
Q Consensus       357 ~----~~~~~~-------~~l~--------~--~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  413 (530)
                      .    .+-..+       ..++        +  ..++|.++..+.+.  ....+..++..+.+......++....++. .
T Consensus       442 ~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~-~  520 (1233)
T KOG1824|consen  442 KQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLS-A  520 (1233)
T ss_pred             HHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchh-h
Confidence            1    000000       0011        0  12355555555444  46788899999988887766665544322 3


Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~  492 (530)
                      ..+++.....++-+++..-|+-....+++.-........-+.+++...+-.    -.+..| ....|.+|+++|...+-.
T Consensus       521 Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~----~tl~rL~a~d~DqeVkeraIscmgq  596 (1233)
T KOG1824|consen  521 LSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD----CTLQRLKATDSDQEVKERAISCMGQ  596 (1233)
T ss_pred             hhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH----HHHHHHhcccccHHHHHHHHHHHHH
Confidence            455666666778888888888888888876654332111134445554431    223333 367889999999887776


Q ss_pred             hC
Q 009622          493 YW  494 (530)
Q Consensus       493 ~~  494 (530)
                      |.
T Consensus       597 ~i  598 (1233)
T KOG1824|consen  597 II  598 (1233)
T ss_pred             HH
Confidence            53

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.70  E-value=6.6e-06  Score=84.60  Aligned_cols=355  Identities=13%  Similarity=0.097  Sum_probs=218.2

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009622           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (530)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  156 (530)
                      .+++.+.++|-+.++.|+.-|.+-+... .-..+.=-+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence            6888999999999999999888766542 111111112346888999999988 999999999999999744333221  


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC----ChHHHHHhhcCCC-chhHHHHHHHHhhhhcc
Q 009622          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG----GLVPLLAQLNGQP-KLSMLRNATWTLSNFCR  231 (530)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~----~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~  231 (530)
                        ..+..|+.-+-+.....+..+...|......-+..........    +.+.+...+.... ...++..++..+.-+..
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence              2345566654444444554444333332222221112222222    3344444443222 33355556655555444


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHh
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG  310 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~  310 (530)
                      .....-..+...++..+..-+.++-..++..++.+|+.++......   +. .++++.|++-|... ........+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            3322222245667777777788888899999999999998654321   11 14566676666654 4445555677777


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc------
Q 009622          311 NIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN------  381 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------  381 (530)
                      .++.........- -..++|.+....   ... +.++|+.+..++.-+...+|..+...+. .++..+++.+..      
T Consensus       239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            7776443322111 135677787777   555 7889999999999888776665543332 233333333310      


Q ss_pred             -------------------------C---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622          382 -------------------------A---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  433 (530)
Q Consensus       382 -------------------------~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a  433 (530)
                                               +   ++.||++|+.++..++.. ..+....+.+ .+-+.++.-++..+..|..-.
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence                                     0   257999999999999885 4455555444 345677777787888888888


Q ss_pred             HHHHHHHHhhhhh
Q 009622          434 LEGLENILKVGEA  446 (530)
Q Consensus       434 l~~l~~ll~~~~~  446 (530)
                      ..++..++..-+.
T Consensus       394 f~~yi~ll~qt~~  406 (1233)
T KOG1824|consen  394 FHAYIALLKQTRP  406 (1233)
T ss_pred             HHHHHHHHHcCCC
Confidence            8888878765544

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.68  E-value=1.1e-06  Score=83.34  Aligned_cols=266  Identities=14%  Similarity=0.083  Sum_probs=180.1

Q ss_pred             CCHHHHHHhhcCCChH--HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622           73 ENLPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      +.+..+++++++++.+  ++.+|.+.|..++..   .+.+.+..-| +..++.+-+....++.+...+.+|.++...+.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            5788999999988765  588999999999875   4566666555 444455545444489999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      ....++..|++..++-..+..++.+..+|+.+|+|++-+ ....+..+++..+-+-|.-+. .+.|.-++..||-+++.|
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            999999999999999999998999999999999999844 334556666766666666666 667888999999999999


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L  309 (530)
                      +..+.........+-+..+-.++.+.|+.--..          ...+..+ -...+.+++|+.+|.+...+.+..+..-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            988755555555565655555666555542111          1111111 11224578899999866544443333333


Q ss_pred             hHhhcC-C-chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622          310 GNIVTG-D-DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       310 ~nl~~~-~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                      +.=+.- . ....+.+-+-|.+..|-.+.+++ +..-.+-|-.+|.-+
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi  450 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence            222211 1 11223344668899999888876 544334444444433

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.67  E-value=1.1e-05  Score=84.04  Aligned_cols=380  Identities=13%  Similarity=0.118  Sum_probs=242.4

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009622           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (530)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  156 (530)
                      ..-++.+...+.++..++..+.++++.-    ......+++++.+.++..++. ..++..|...+.++........ .. 
T Consensus       241 ~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d~-  313 (759)
T KOG0211|consen  241 IVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-DV-  313 (759)
T ss_pred             HHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-hh-
Confidence            3333445677889988998888887542    225567889999999998887 7999999998888877322211 11 


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC--------------------CCchhh--------------------hh
Q 009622          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAG--------------------DSPRCR--------------------DL  196 (530)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~--------------------~~~~~~--------------------~~  196 (530)
                      ...+.+.+++...+.++.++.........++.                    +.+..+                    ..
T Consensus       314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~  393 (759)
T KOG0211|consen  314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPN  393 (759)
T ss_pred             hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccc
Confidence            22456778888877777776655544444431                    111000                    00


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                      +....+++.+-.++ .+.+..++...+..+..+.--.+  ........+|.+...++..++.++.+..+.+..+-...+.
T Consensus       394 i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v  470 (759)
T KOG0211|consen  394 IPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDV  470 (759)
T ss_pred             cchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCc
Confidence            11111222222222 44455555555544444433222  3334566788888888889999999999877665433332


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       277 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                      .-...+....++.+..+-....|.++...++.+-.++....   ..+++...-+.+..++.+. ...+++.|+..+.-++
T Consensus       471 ~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~  546 (759)
T KOG0211|consen  471 IGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALV  546 (759)
T ss_pred             ccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHH
Confidence            22224444677888888777789999999998888875333   3444555666677777766 7789999999888887


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHH
Q 009622          357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG  436 (530)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~  436 (530)
                      .....   .......++.++.....++...|...+.++.-++.....+.    ....+++.+.++..+..+.|+..++..
T Consensus       547 ~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~  619 (759)
T KOG0211|consen  547 ETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKH  619 (759)
T ss_pred             HHhCc---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHH
Confidence            62211   12223467777877777778999999999998876443333    334578999999999999999999999


Q ss_pred             HHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009622          437 LENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE  491 (530)
Q Consensus       437 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~  491 (530)
                      |..+...-....              .+......++.|-..++.++...|.....
T Consensus       620 L~~i~~~L~~~~--------------~~~~v~pll~~L~~d~~~dvr~~a~~a~~  660 (759)
T KOG0211|consen  620 LPKILKLLDESV--------------RDEEVLPLLETLSSDQELDVRYRAILAFG  660 (759)
T ss_pred             HHHHHhhcchHH--------------HHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence            999887543311              11223455566666667666655554443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.63  E-value=1.5e-05  Score=79.89  Aligned_cols=332  Identities=14%  Similarity=0.096  Sum_probs=206.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH--TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +..++..|++.. +.++.+|+..++.++.--..+  -+.+...|  -.|-..|....+++.-..+.+|..|.....-.+.
T Consensus       801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence            334455677777 899999999888877621111  12233334  2366777778888877666666655532210001


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .---.+++|.|..+| ++....++.+++..+..+|...+.. .......+.--|+.+|.+.+.+++..+..++++++..-
T Consensus       878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence            111245788888989 7888999999999999999887442 22233445556788888899999999999999987542


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      .       -.+++..|+.-|+..+-..+....-+++-.+..+..       ..++|.|+.=...+ +..|+.-...+++-
T Consensus       957 G-------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen  957 G-------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred             C-------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence            1       114455566555554433333333333333332221       23567776666666 77888888888888


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-------CCCh
Q 009622          355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-------CPDP  427 (530)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-------~~~~  427 (530)
                      +.....+.....+ ..+.|.|-+.|.+.|.--|+.|+.++.+++.+..        -.|+.+.++.+|+       ...|
T Consensus      1022 ~FeyigemskdYi-yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYI-YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred             HHHHHHHHhhhHH-HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCCh
Confidence            7652211111111 2367788888888899999999999999998642        1244444444443       4677


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          428 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       428 ~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .+++...+++..+-..-..                  .-.+..+..=.-|+...|.+..-.+.+..+-
T Consensus      1093 hviqa~~e~~eg~r~~Lg~------------------~~~~~Y~~QGLFHParkVR~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1093 HVIQAFDEAMEGLRVALGP------------------QAMLKYCLQGLFHPARKVRKRYWTVYNSMYH 1142 (1172)
T ss_pred             HHHHHHHHHHHHHHHHhch------------------HHHHHHHHHhccCcHHHHHHHHHHHHHhHhh
Confidence            7777777766655432111                  1112333333578888898888888876554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=4.1e-06  Score=84.81  Aligned_cols=301  Identities=16%  Similarity=0.147  Sum_probs=183.1

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..+..++....+++|.++..|++....+   .-...+..     +...+...+++.+ +-++..|+-+..++-..+.   
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~v~~i~ey-----~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~~---  153 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCL---RVDKITEY-----LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDIDP---  153 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeE---eehHHHHH-----HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCCh---
Confidence            3555555556667777776666554422   10111222     4667888888888 9999999999888877544   


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      +.+.+.|+++.|..++.+.++.+...|+.+|..|....+..-...+....+..++..+    +.-.--.-+.++-.++..
T Consensus       154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y  229 (734)
T KOG1061|consen  154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEY  229 (734)
T ss_pred             hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhc
Confidence            3466789999999999999999999999999999876653111212222344444444    222222334455566666


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                      .+... .....++..+...+.+.++.+...+...+.++......... .+-..+-+.++.++.+.. .+...+++-+.-+
T Consensus       230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li  306 (734)
T KOG1061|consen  230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI  306 (734)
T ss_pred             CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence            55444 44566777778888888888887888887777655444222 333355666777776666 6666666666555


Q ss_pred             hcCCchhhHHH-------------------------h-hcC---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009622          313 VTGDDMQTQCV-------------------------I-EYQ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (530)
Q Consensus       313 ~~~~~~~~~~~-------------------------~-~~~---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (530)
                      ....+.....-                         . +.+   ++.-+...-..- +.+..+++.+++++++..-.+. 
T Consensus       307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~-  384 (734)
T KOG1061|consen  307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS-  384 (734)
T ss_pred             HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence            54333211000                         0 111   222222222233 6778889999999998743221 


Q ss_pred             HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                           .+++..|++++...-..+..+++..+..+..
T Consensus       385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             -----hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence                 4567777777765544555556666665554

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=7.5e-05  Score=75.00  Aligned_cols=255  Identities=16%  Similarity=0.161  Sum_probs=184.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      +-+-++.+|+++. |-++..|+.++..+....++....     .+|.|..-|.++++.++..|+..++.||.-+|..-  
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence            4556788899888 999999999999999876766543     47999999999999999999999999998887531  


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHH--HhccC
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALS--YLSDG  273 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~--~l~~~  273 (530)
                         ...-|.+.+++.++.+.-+.-..+..+..|+-..|    .....++|.|..++.+.. ..+...++.++.  +++.+
T Consensus       217 ---L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 ---LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ---ccccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence               22567788888777787788888888888876543    334667888999988764 456666666653  33333


Q ss_pred             ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622          274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       274 ~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      .++... .+. -.++.|-.++.+.++.++.-++.+++.++...+...+.     .-..++.+|.+. ++.+|-.|...|-
T Consensus       290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence            211111 111 24577888888999999999999999999877655433     245788899988 9999999999998


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCc-hhHHHHHHHHHHHhhcCC
Q 009622          354 NITAGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGG  401 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~nl~~~~  401 (530)
                      -+...  +++..     ++..|+..+...+ ...|.+.+.-+..++...
T Consensus       362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s  403 (877)
T KOG1059|consen  362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS  403 (877)
T ss_pred             HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence            88652  33333     3445555444443 467777777777666643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=3e-06  Score=87.83  Aligned_cols=252  Identities=16%  Similarity=0.190  Sum_probs=192.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.+|.+++.|-|  .-.++.|+..|.+++.-. ...+.....-|+.|.++++|+++. .+++.--+.+-+.|..-++.+.
T Consensus       472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            355666665554  345667888899888664 566777778899999999999998 8999998989999888788888


Q ss_pred             HHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          153 KVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      ..+++.++-.++++.|..   -+++-+..|+.+|+.|+.+-+.-+..+.+.+.+...+..+..+..+-++..+|-+|..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            888888778888888865   24588999999999999887777888888899998899995445788899999999999


Q ss_pred             ccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHhCcH---HH
Q 009622          230 CRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVF---PR  289 (530)
Q Consensus       230 ~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~i---~~  289 (530)
                      -.+.+.... .....+-..|..+|..+-++|+..++.+|+.+..+    .++....+            ++.-+.   -.
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            988754443 34466778899999989999999999999998765    23222211            111111   25


Q ss_pred             HHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCc
Q 009622          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (530)
Q Consensus       290 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~  328 (530)
                      ++.+++.+.+-++....-++..++.+.......+.-...
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~  746 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYL  746 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhc
Confidence            677778888888888888888888777665544443333

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.58  E-value=1.7e-06  Score=84.78  Aligned_cols=338  Identities=15%  Similarity=0.103  Sum_probs=200.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .+..+++.|++..|.++..|+.....++..-. ......+...|.  .|.+.|.... |++.-..+.+++.|.+. ...+
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv-~~~~  680 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSV-HRFR  680 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhh-hccc
Confidence            45677788999999999999877665542210 122333444443  3677777776 88887777777666652 1111


Q ss_pred             HHH--HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622          153 KVV--IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       153 ~~~--~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                       .+  =-.|++|.|.-+|++....+..+.+..++.||..+|+....---..+--.|+..| .+.+.+++++|..++..++
T Consensus       681 -~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         681 -SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             -ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHH
Confidence             01  0158999999999999999999999999999988876322111112334567777 7789999999999999998


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~  310 (530)
                      +.-.      -..++..|+.-|+..+-..+....-+++-.+....-       -.++|.|+.=-..++..++.-.+++++
T Consensus       759 ~aiG------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~  825 (975)
T COG5181         759 RAIG------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMC  825 (975)
T ss_pred             hhcC------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHH
Confidence            7631      134555566555555444443333333333322211       134566665555667778887888777


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH--HHHHHhCcHHHHHHHHhcCchhHHH
Q 009622          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI--QAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      -+.....+.... .-..+.|.|-..|.+. ++.-|..|..++..++.+.+...  ..+++  ++..|..-+-.+.|.+..
T Consensus       826 fmFeyig~~s~d-Yvy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~  901 (975)
T COG5181         826 FMFEYIGQASLD-YVYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQ  901 (975)
T ss_pred             HHHHHHHHHHHH-HHHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHH
Confidence            766433222111 1135678888888888 99999999999999887543311  11111  222222222345566665


Q ss_pred             HHHHHHHHhhcCC-CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          389 EAAWAISNATSGG-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       389 ~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      .....+-.++..- .....+         .+..=|-.+...++. ..|..++++...
T Consensus       902 ~~~Eg~e~~~~~lg~g~~m~---------Yv~qGLFHPs~~VRk-~ywtvyn~myv~  948 (975)
T COG5181         902 SFDEGMESFATVLGSGAMMK---------YVQQGLFHPSSTVRK-RYWTVYNIMYVF  948 (975)
T ss_pred             HHHHHHHHHHHHhccHHHHH---------HHHHhccCchHHHHH-HHHHHHhhhhhc
Confidence            5444444333211 112222         233334455555554 566666666443

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=0.00057  Score=62.54  Aligned_cols=341  Identities=15%  Similarity=0.154  Sum_probs=226.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~---~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      .+.+-..|..++..+...++..+..++.+.+...   +..++..|+++.++.++..++ .++...|...+..++. .+..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence            4555556677888899999999998886643222   445668999999999999888 8999999999999998 7888


Q ss_pred             HHHHHhCCChHHHHH--hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          152 TKVVIDHGAVPIFVK--LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~--lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      ...++.+..+..+-.  +.-..+.-.+......+..|.+-++.....+-..|.+..|..-+....|.-++.+++.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            888888776655432  222345556777888888998888888888888999988888885557888889999999999


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh--H-HHHHHHHh--CcHHHHHHhhCCCCchhH
Q 009622          230 CRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVFPRLAEFLMHPSPSVL  302 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~--~-~~~~~~~~--~~i~~L~~lL~~~~~~~~  302 (530)
                      ........+....+++..+...+.-.  ++--.-.++...+.+.....  + .-+.+++.  -+++...+.+...++...
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            88777777777788888888877633  34333334444443332110  0 00111111  234555666777889999


Q ss_pred             HHHHHHHhHhhcCCchhhHHHhhcCc--hHHH-HHhhcCCCchhHHHHHHHHHHHHhcC---CHHHH---------HHHH
Q 009622          303 IPALRTVGNIVTGDDMQTQCVIEYQA--LPCL-LNLLSGNYKKSIKKEACWTVSNITAG---NREQI---------QAVI  367 (530)
Q Consensus       303 ~~a~~~L~nl~~~~~~~~~~~~~~~~--l~~L-~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~---------~~l~  367 (530)
                      ..|+.++|.+.+... ..+.+...|-  ...+ ....+.. ...-+..+..+|.+++..   .++++         ..++
T Consensus       322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli  399 (524)
T KOG4413|consen  322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI  399 (524)
T ss_pred             HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence            999999999886443 3344444332  2222 2223322 334456677888888762   22221         1111


Q ss_pred             -H-------hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 009622          368 -E-------ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD  420 (530)
Q Consensus       368 -~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  420 (530)
                       +       ..-...+..+++.+.++++..+..++..++.... -....+...+++....+
T Consensus       400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPW-alkeifakeefieiVtD  459 (524)
T KOG4413|consen  400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPW-ALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcH-HHHHHhcCccceeeecc
Confidence             1       1234556667777889999999999999988532 23333335566555444

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=9.5e-07  Score=85.19  Aligned_cols=306  Identities=14%  Similarity=0.117  Sum_probs=198.1

Q ss_pred             HHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCC
Q 009622          178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSND  256 (530)
Q Consensus       178 ~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d  256 (530)
                      .++.+|-.++..-...|.-+.+..+.++|+++| ..++..+.-.++..++|+.-.. +-.......+++..|+.++.+.|
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            334455556555556677778888999999999 6677777777777888877655 33445556889999999999999


Q ss_pred             hhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch---hhHHHhhc----Cc
Q 009622          257 DEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEY----QA  328 (530)
Q Consensus       257 ~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~---~~~~~~~~----~~  328 (530)
                      ..++.+..|.+.++..+.+...+ ..+..-.+..++++.+++.+.++..++.++.|+.+.+..   ..+..++.    -+
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            99999999999999877654322 244556789999999999999999999999999874332   22222221    25


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HhCcHHHHHHHHhcC-----------chhHHHHHHHHHHH
Q 009622          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENA-----------EFDIKKEAAWAISN  396 (530)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~n  396 (530)
                      .+.|++.+... +|-.-...|+.|.++++.+....+.+. +..++..+.++|...           +..+-........+
T Consensus       567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~  645 (743)
T COG5369         567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN  645 (743)
T ss_pred             HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence            66777777777 777777789999999886655444444 244555555554321           11222233334444


Q ss_pred             hhcCCCHHHHHHHHHcCCh--HHHHhccC---CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009622          397 ATSGGTHEQIKFLVIQGCI--KPLCDLLV---CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI  471 (530)
Q Consensus       397 l~~~~~~~~~~~l~~~~~l--~~L~~lL~---~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  471 (530)
                      +....+ .+ .    .+..  +++-.+=+   .++.++.....|.+.++.-. +....... ..-.-++.+.+.|.-+-+
T Consensus       646 l~e~~d-~f-~----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~-~~~~~vtr-atveR~~iL~~~G~~e~l  717 (743)
T COG5369         646 LSENSD-KF-K----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWK-EDGSEVTR-ATVERIQILCANGIREWL  717 (743)
T ss_pred             cccccc-cc-c----cceecCCCccccccccCCCchhhhhccceEEEecccC-ccCCccch-hhHHHHHHHHHccHHHHH
Confidence            443211 11 1    1111  22222211   23344666666766664321 11111000 122457788889999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHh
Q 009622          472 ESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       472 ~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      ..+|.++++.|.+++-..+...
T Consensus       718 ~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         718 VKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHhccCcHHHHHHHHHHHHhh
Confidence            9999999999999999888643

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=0.00021  Score=72.63  Aligned_cols=366  Identities=14%  Similarity=0.151  Sum_probs=225.8

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      -..|..+|.|+.......|+..+..+...+. + +     +...|.+|+...+.+ .+++...---|...+...++..  
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~-d-v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--  106 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGK-D-V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--  106 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcCC-c-H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--
Confidence            3678889999999999999988877765542 2 2     335888999999888 9999998888888888555432  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      +   =.|..+-+-|+++++.+|..|+++|+.|=       -.++..=++-.+-++. .+..+-+++.|+.++-.|-+-++
T Consensus       107 L---LSIntfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~  175 (968)
T KOG1060|consen  107 L---LSINTFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDP  175 (968)
T ss_pred             e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCCh
Confidence            1   23788999999999999999999998762       1111100122222333 77889999999999998877654


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~  314 (530)
                      ...    ..++..+-.+|...++-|.-.|+.++-.+|-..-+.+.     +-..++..+|.+-+..-+..++.+|...+.
T Consensus       176 e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR  246 (968)
T KOG1060|consen  176 EQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYAR  246 (968)
T ss_pred             hhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence            332    25566677788888999999999998887744333222     345667777666444445555555555543


Q ss_pred             CC---chh----------------------hHHHhhc---CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009622          315 GD---DMQ----------------------TQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV  366 (530)
Q Consensus       315 ~~---~~~----------------------~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (530)
                      ..   +..                      .....+.   -++...-.+|.+. ++.|...+|.+...++-.+  +.   
T Consensus       247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~--~~---  320 (968)
T KOG1060|consen  247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKN--QV---  320 (968)
T ss_pred             hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHH--HH---
Confidence            11   100                      0000010   1234445566666 7777777777777776432  11   


Q ss_pred             HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC----------------CHHHHHH--------HHHcC----ChHHH
Q 009622          367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGG----------------THEQIKF--------LVIQG----CIKPL  418 (530)
Q Consensus       367 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~----------------~~~~~~~--------l~~~~----~l~~L  418 (530)
                        .+++..|+++|.+ +..+|.-.+..+..++...                ++.+.+.        |+..+    ++.-|
T Consensus       321 --~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~  397 (968)
T KOG1060|consen  321 --TKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL  397 (968)
T ss_pred             --HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence              2356677776654 3456666666665555322                2222221        12111    23445


Q ss_pred             HhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       419 ~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ..++++.|..+...+..+|+......-...                .-++.-|..|+.+.++-|-..|...|.+...
T Consensus       398 q~YI~s~d~~faa~aV~AiGrCA~~~~sv~----------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq  458 (968)
T KOG1060|consen  398 QTYIKSSDRSFAAAAVKAIGRCASRIGSVT----------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ  458 (968)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHhhCchh----------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence            555567777777777777777664432211                2234555666666666666666666666544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=6.2e-05  Score=78.43  Aligned_cols=305  Identities=13%  Similarity=0.192  Sum_probs=200.1

Q ss_pred             hhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009622           70 KKLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        70 ~~~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~  148 (530)
                      ..++.++-+...|.+ .++.++..|+..+..+.+.  .+.+..+...|++-.|+.+|.+.  |..+..++..|..+++ +
T Consensus      1768 ~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~ 1842 (2235)
T KOG1789|consen 1768 LLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-N 1842 (2235)
T ss_pred             hhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-C
Confidence            355677888888874 7889999999999877655  68899999999999999999864  6889999999999999 6


Q ss_pred             hhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC---chhhhhHhhc----------CChHHHHHhhc-CC
Q 009622          149 SEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS---PRCRDLVLSQ----------GGLVPLLAQLN-GQ  213 (530)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~---~~~~~~i~~~----------~~i~~Ll~ll~-~~  213 (530)
                      ++......+.|++..+..++-. .++..+.+++..++.+..+.   |..+-.++..          +.-+..+..+. .+
T Consensus      1843 ~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~ 1922 (2235)
T KOG1789|consen 1843 GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTS 1922 (2235)
T ss_pred             cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccC
Confidence            7777777778888888877644 67889999999999997643   3222211110          01122233331 11


Q ss_pred             Cchh------HHHHHHHHhhhhcc----CC---CC--------------------------------------CChhhhh
Q 009622          214 PKLS------MLRNATWTLSNFCR----GK---PQ--------------------------------------PPFDQVS  242 (530)
Q Consensus       214 ~~~~------~~~~a~~~L~~L~~----~~---~~--------------------------------------~~~~~~~  242 (530)
                      .+++      .+......+..+..    ..   +.                                      ....+..
T Consensus      1923 EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~ 2002 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLT 2002 (2235)
T ss_pred             CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHH
Confidence            1221      22222222222211    00   00                                      0011224


Q ss_pred             chHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009622          243 PALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (530)
Q Consensus       243 ~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~  320 (530)
                      +++..+..++..+++  ........++..+....+...+.+-..|.+|.++..+...+..+-..|++.|..++. +....
T Consensus      2003 ~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~ 2081 (2235)
T KOG1789|consen 2003 ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCC 2081 (2235)
T ss_pred             HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHH
Confidence            555566666654432  222333334444555555555556666999999999999888888999999999986 44555


Q ss_pred             HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcC
Q 009622          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENA  382 (530)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~  382 (530)
                      ..+.....+..+++.+...  +...--||.+|..+.. ...+.+...++.|++|.|+.+|+..
T Consensus      2082 ~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2082 DAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            6666666666677777653  3444577888888765 4445566677889999999999764

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=0.00013  Score=72.63  Aligned_cols=328  Identities=16%  Similarity=0.205  Sum_probs=207.1

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..+++.+.-+.+.+|.....++.-+...........     +.+.+.++++... ..-+..+++.+..+..+..  ..
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~~--i~  168 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGLG--IE  168 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCcH--Hh
Confidence            45677777777888899888888887655432333332     4677888888777 7889999999999988543  34


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHH-HHHHHHHhhhCC-CchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVRE-QAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~-~a~~~L~nl~~~-~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      .+.+.+++..|...+.+.....+. .++.+.-..++. ++.....+.  ..++.++... .+....++..+..+...+.+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence            556678889999998875444333 333333322221 121111111  1344444444 56677888888777766655


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      .-+.   ..+..++|.++.-+......-...++..++.++...+.+.. ..-..++|.+.+.|.+..+.++..+..++-+
T Consensus       246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK  321 (569)
T ss_pred             hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence            4321   12244455555544444555667788888888877776655 4445899999999999999999999998888


Q ss_pred             hhcCCch-hhHHH------------------------------hhcCchHHHHHhhc----CCCchhHHHHHHHHHHHHh
Q 009622          312 IVTGDDM-QTQCV------------------------------IEYQALPCLLNLLS----GNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       312 l~~~~~~-~~~~~------------------------------~~~~~l~~L~~lL~----~~~~~~v~~~a~~~L~nl~  356 (530)
                      ++.--+. .++.+                              ++...+..++.+++    .. +..+++.++.++.|++
T Consensus       322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~  400 (569)
T KOG1242|consen  322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC  400 (569)
T ss_pred             HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence            7642211 11111                              11223444444443    33 5678899999999999


Q ss_pred             cC--CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009622          357 AG--NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  423 (530)
Q Consensus       357 ~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  423 (530)
                      .-  ++..+..++. .++|.|-..+.+..|++|..+..||+.+...-....   +  .+.++.+...+.
T Consensus       401 ~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~---f--~d~~p~l~e~~~  463 (569)
T KOG1242|consen  401 KLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS---F--DDLIPELSETLT  463 (569)
T ss_pred             HhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc---c--cccccHHHHhhc
Confidence            83  4554444443 367777777777789999999999988876432111   1  345555555554

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=6.4e-06  Score=80.16  Aligned_cols=317  Identities=13%  Similarity=0.113  Sum_probs=202.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..+++++..+...|..+++.||..+-+++...+.....  .-..+...+.++..+++ ..++. ++..+-.+..+-....
T Consensus        84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES  159 (675)
T ss_pred             HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence            36788899999999999999999998887653222221  22445667778777766 55553 4444444443221111


Q ss_pred             H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622          153 K-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       153 ~-~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      + .+-=.+++|.|-..+...++..|...+.-|..+-. .| ..+.+. -..+++.|+++| .+++.+++..+-.+++++.
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence            1 11113456666666666788888877777766632 22 233332 223677788888 7778888887777777766


Q ss_pred             cCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCch-hHHHHHHH
Q 009622          231 RGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIPALRT  308 (530)
Q Consensus       231 ~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-~~~~a~~~  308 (530)
                      ..-. .+........++.++.-+.++++.++..|+.-+..+..-..... ...-+|++..+++++.+.++. ++..+...
T Consensus       237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~  315 (675)
T KOG0212|consen  237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMV  315 (675)
T ss_pred             HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence            5442 22233557788999999999999998887666665554433221 233457888888888877664 44443322


Q ss_pred             ---HhHhhcCCchhhHHHhhc-CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622          309 ---VGNIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       309 ---L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                         +..++. .+...+. ++. .+++.+.+.+.++ ..+.|-.+..-+..+-...+.+. ......+++.|+..|.+.+.
T Consensus       316 n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd  391 (675)
T KOG0212|consen  316 NGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSD  391 (675)
T ss_pred             HHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchh
Confidence               222222 1111111 332 4788899999988 88888888755555544333332 22345789999999999999


Q ss_pred             hHHHHHHHHHHHhhcCC
Q 009622          385 DIKKEAAWAISNATSGG  401 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~~  401 (530)
                      +|...++..+.+++...
T Consensus       392 ~vvl~~L~lla~i~~s~  408 (675)
T KOG0212|consen  392 EVVLLALSLLASICSSS  408 (675)
T ss_pred             HHHHHHHHHHHHHhcCc
Confidence            99999999999999854

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=9e-05  Score=67.19  Aligned_cols=270  Identities=14%  Similarity=0.148  Sum_probs=178.3

Q ss_pred             HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh-hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009622          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (530)
Q Consensus       204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  282 (530)
                      ..++.++ .+.++.++..|+.-+..++.. +..... .....++.+.+++...++  ...+..++.|++.... ....++
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll   80 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLL   80 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHH
Confidence            4567777 788899999999988888876 222222 235567778888877766  6788899999987654 334455


Q ss_pred             HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh--h----cCchHHHHHhhcCCCch-hHHHHHHHHHHHH
Q 009622          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI--E----YQALPCLLNLLSGNYKK-SIKKEACWTVSNI  355 (530)
Q Consensus       283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~--~----~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl  355 (530)
                      +. ++..++..+.++.+.+...++..++|++...+.......  .    .|++.......+.+.+. .--...+.+++|+
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            54 889999999999889999999999999986654433322  2    45666666666555332 2234566777888


Q ss_pred             hcCCHHHHHHHHHhCcHH--HHHHHHhcCchhHHHH-HHHHHHHhhcCCCHHHHHHHHHc--CChHHH------------
Q 009622          356 TAGNREQIQAVIEANIIG--PLVALLENAEFDIKKE-AAWAISNATSGGTHEQIKFLVIQ--GCIKPL------------  418 (530)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~--~L~~ll~~~~~~v~~~-a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L------------  418 (530)
                      +.. +..+..+.+...++  .+.. +.+.+..||+. .+..|.|++...  ..-..++..  .+++.|            
T Consensus       160 s~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  160 SQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             hhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence            653 34444454433322  2222 33345566654 466777877642  222333321  122222            


Q ss_pred             ---------HhccC-----CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHH
Q 009622          419 ---------CDLLV-----CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIY  483 (530)
Q Consensus       419 ---------~~lL~-----~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~v~  483 (530)
                               .++|.     .+|+.++...+++|..++.-..            .++.+..-|+...+.++ ..-+++++.
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~------------GRe~lR~kgvYpilRElhk~e~ded~~  303 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA------------GREVLRSKGVYPILRELHKWEEDEDIR  303 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH------------hHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence                     13332     3578899999999987774433            38888899999999988 466999999


Q ss_pred             HHHHHHHHHhCC
Q 009622          484 EKSVKLLETYWL  495 (530)
Q Consensus       484 ~~a~~il~~~~~  495 (530)
                      +.+.++++-...
T Consensus       304 ~ace~vvq~Lv~  315 (353)
T KOG2973|consen  304 EACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887766

>TIGR02270 conserved hypothetical protein

Probab=98.48  E-value=5.8e-05  Score=74.20  Aligned_cols=242  Identities=17%  Similarity=0.062  Sum_probs=166.1

Q ss_pred             CHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .++.++..+. .+++++...++..+..   .. .+.        .+..|++.|.+.+ +.++..++.+|+.+-.      
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLA---QE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence            5677777774 4566676665555432   11 111        2778889998887 7899999999876443      


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                           ....+.|+.+|.+.++.++..++.+++..-            ....+.+..++ ++.+..++..++.++..+...
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                 234577888888888889988887777621            11345777788 688899999999999887653


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                                ..++.|...+.+.++.|+..+++++..+..  +.         .+..+..+...........+..+++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      356667777888899999999999877643  21         223344433333433443333344333


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  392 (530)
                        +.+         .+++.|..+++.+   .++..++++++.+-..           ..++.|+..+.+.  .++..|..
T Consensus       237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHHH
Confidence              111         4678888888865   4999999999987432           3678888888644  49999999


Q ss_pred             HHHHhhcC
Q 009622          393 AISNATSG  400 (530)
Q Consensus       393 aL~nl~~~  400 (530)
                      ++..++.-
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99999874

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00012  Score=74.22  Aligned_cols=283  Identities=19%  Similarity=0.197  Sum_probs=170.5

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC
Q 009622          122 VEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG  201 (530)
Q Consensus       122 v~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~  201 (530)
                      -+...+.. +-+|..|+.++..+-+-.++....+     +..+-.+|.+.++-+.-.|+.++-.+|-+.-+   .+  .+
T Consensus       149 k~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerld---LI--Hk  217 (968)
T KOG1060|consen  149 KKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERLD---LI--HK  217 (968)
T ss_pred             HHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHHH---Hh--hH
Confidence            34455555 8888889888888888777776654     34566677777888888888888887744321   11  12


Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCC-------------------------C---hhhhhchHHHHHHhh
Q 009622          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP-------------------------P---FDQVSPALPALAHLI  252 (530)
Q Consensus       202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~-------------------------~---~~~~~~~l~~L~~ll  252 (530)
                      -...+.+++ .+-+.--+..++..|...|+.. +.+                         +   .....-++...-.++
T Consensus       218 nyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl  296 (968)
T KOG1060|consen  218 NYRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL  296 (968)
T ss_pred             HHHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence            344555555 3334333444444554444433 111                         0   111233455566778


Q ss_pred             cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009622          253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (530)
Q Consensus       253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L  332 (530)
                      .+.++.+...++.++.+++-..  ...     .++..|+.+|.+. ..++...+..+..++...+...        .|.+
T Consensus       297 ~S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF--------~P~l  360 (968)
T KOG1060|consen  297 QSRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLF--------EPHL  360 (968)
T ss_pred             hcCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhh--------hhhh
Confidence            8889999999999999987433  122     4567788877654 4566667777776665444222        2333


Q ss_pred             HHhhcCCCc-hhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009622          333 LNLLSGNYK-KSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV  410 (530)
Q Consensus       333 ~~lL~~~~~-~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~  410 (530)
                      -..+-.+.+ ..++..=..+|++|+.. +..        .+++.+...+.+.+.++...++.+|+.++.... .     +
T Consensus       361 KsFfv~ssDp~~vk~lKleiLs~La~esni~--------~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v  426 (968)
T KOG1060|consen  361 KSFFVRSSDPTQVKILKLEILSNLANESNIS--------EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----V  426 (968)
T ss_pred             hceEeecCCHHHHHHHHHHHHHHHhhhccHH--------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----h
Confidence            333332213 34555556677777653 211        245566666777766677777777777766321 1     2


Q ss_pred             HcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          411 IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       411 ~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      ...++..|+.++++.+..|+..+...|..++...+.
T Consensus       427 ~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~  462 (968)
T KOG1060|consen  427 TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA  462 (968)
T ss_pred             hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence            234677777777777777777777777777765544

>PF05536 Neurochondrin: Neurochondrin

Probab=98.47  E-value=0.00042  Score=71.12  Aligned_cols=381  Identities=15%  Similarity=0.116  Sum_probs=225.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHh
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIA  145 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~~L~~l~  145 (530)
                      .+.+.+..|++.+.+.++.|+-.+.+++...+...  .+.+.+.=..+.+-++|.++.      ....+.-|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            67888999999998899999999999988653222  234666655777888888732      2467788888999998


Q ss_pred             cCChhhH--HHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009622          146 SGTSEHT--KVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (530)
Q Consensus       146 ~~~~~~~--~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a  222 (530)
                      . .++..  ..++  +-||.|+..+.+.+. .+...|+.+|..++.. +.-+..+.+.|.++.|...+.+  .+.....+
T Consensus        86 ~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A  159 (543)
T PF05536_consen   86 R-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEIA  159 (543)
T ss_pred             C-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence            8 44443  2333  568999999988666 8999999999999944 4568888999999999999944  55667788


Q ss_pred             HHHhhhhccCCCCC----ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHHHHH----hCcHHHHHHh
Q 009622          223 TWTLSNFCRGKPQP----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVFPRLAEF  293 (530)
Q Consensus       223 ~~~L~~L~~~~~~~----~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~----~~~i~~L~~l  293 (530)
                      +.++.+++......    .......+++.+...+..........++..|..+....+.. ......    ..+...+..+
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            88888877654321    22233456667777776666666777888888876554211 011111    1334445555


Q ss_pred             hCCC-CchhHHHHHHHHhHhhcCCc--------h-----hhHHHhhcC------chHHHHHhhcCCCchhH--HHHHHH-
Q 009622          294 LMHP-SPSVLIPALRTVGNIVTGDD--------M-----QTQCVIEYQ------ALPCLLNLLSGNYKKSI--KKEACW-  350 (530)
Q Consensus       294 L~~~-~~~~~~~a~~~L~nl~~~~~--------~-----~~~~~~~~~------~l~~L~~lL~~~~~~~v--~~~a~~-  350 (530)
                      |.+. .+.-|.+++...+.+.....        .     ..-.+++.-      .++.|......+..+..  +-.+|+ 
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~  319 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFS  319 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHH
Confidence            6553 45667777766666653211        0     111111110      11111111111100111  111222 


Q ss_pred             H----HHHHhc--------CCHHHHHHHHH--hCcHHHHHHHHhcC------chhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009622          351 T----VSNITA--------GNREQIQAVIE--ANIIGPLVALLENA------EFDIKKEAAWAISNATSGGTHEQIKFLV  410 (530)
Q Consensus       351 ~----L~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~  410 (530)
                      +    +..++.        ..++....+..  .+.+..++++|.+.      ++..-..++++|+......+....+.+ 
T Consensus       320 ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v-  398 (543)
T PF05536_consen  320 ILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV-  398 (543)
T ss_pred             HHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH-
Confidence            1    122222        12334444332  23455555555432      333666788888888776554444444 


Q ss_pred             HcCChHHHHhccCCCCh----------HHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH
Q 009622          411 IQGCIKPLCDLLVCPDP----------RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL  474 (530)
Q Consensus       411 ~~~~l~~L~~lL~~~~~----------~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  474 (530)
                       .|.++.|+.+......          +.+...+=+|..+...            ...+..|...||.+.+.+.
T Consensus       399 -~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e------------~~gr~~l~~~~g~~~l~~~  459 (543)
T PF05536_consen  399 -YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE------------EEGRKILLSNGGWKLLCDD  459 (543)
T ss_pred             -HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc------------HHHHHHHHhCCcHHHHHHH
Confidence             3788888888864322          2344444444444422            2247777778887776653

>TIGR02270 conserved hypothetical protein

Probab=98.42  E-value=0.00011  Score=72.38  Aligned_cols=243  Identities=17%  Similarity=0.052  Sum_probs=169.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      .++.++..+....++.+...+++++.....  +.         .+..|+..|.+.++.++..++.+|+.+-         
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~---------  114 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--AL---------DLRSVLAVLQAGPEGLCAGIQAALGWLG---------  114 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCC---------
Confidence            578888888544437887777666642211  11         2788999999988889999999998752         


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                        .......|+.++ .+.++.++..++.++....           ....+.+..+|.+.++.++..++++++.+...   
T Consensus       115 --~~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---  177 (410)
T TIGR02270       115 --GRQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR---  177 (410)
T ss_pred             --chHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence              122567788888 7788888888887776521           22356788889999999999999999987532   


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       277 ~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                              ..++.|...+.+.++.++..|+..++.+..  +         ..+..+....... ....+..+..++... 
T Consensus       178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~-  236 (410)
T TIGR02270       178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA-  236 (410)
T ss_pred             --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence                    345667778999999999999999977643  2         2234555534433 333444434444333 


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHH
Q 009622          357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG  436 (530)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~  436 (530)
                       +.+         ..++.|..++.++.  ++..++++++.+-..            ..++.|+..++...  +...+.++
T Consensus       237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~eA  290 (410)
T TIGR02270       237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGEA  290 (410)
T ss_pred             -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHHH
Confidence             222         36778888887654  999999999977553            35777777776443  88889999


Q ss_pred             HHHHHhh
Q 009622          437 LENILKV  443 (530)
Q Consensus       437 l~~ll~~  443 (530)
                      +..|.-.
T Consensus       291 ~~~ItG~  297 (410)
T TIGR02270       291 FSLITGM  297 (410)
T ss_pred             HHHhhCC
Confidence            8888643

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=1.7e-06  Score=83.56  Aligned_cols=281  Identities=17%  Similarity=0.246  Sum_probs=186.0

Q ss_pred             HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc
Q 009622          112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (530)
Q Consensus       112 ~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~  191 (530)
                      +.+..+++.|+++|+.++ ..+..-+...++|..-..+.-...+...|++..|+.++.+.+..++....|.+.++..++.
T Consensus       427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq  505 (743)
T COG5369         427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ  505 (743)
T ss_pred             ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence            345678899999999877 6777788888999888778888889999999999999999899999999999999986654


Q ss_pred             hh-hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCC-C-Chhhh------hchHHHHHHhhcCCChhHHHH
Q 009622          192 RC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-P-PFDQV------SPALPALAHLIHSNDDEVLTD  262 (530)
Q Consensus       192 ~~-~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~-~~~~~------~~~l~~L~~ll~~~d~~v~~~  262 (530)
                      .. +-..+..-++..++.+. .++.-.++..++..|.|+..+... . ...+.      .-+...|++-++..++-....
T Consensus       506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~  584 (743)
T COG5369         506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE  584 (743)
T ss_pred             chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence            32 22344555788899988 888899999999999999875422 1 11111      224455666677777766666


Q ss_pred             HHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCC-----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009622          263 ACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMH-----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (530)
Q Consensus       263 a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~-----------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~  330 (530)
                      .+..|.+++..++...+.+. ....+..+..+|..           ....+..+...+..++....+.....+.-.   |
T Consensus       585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p  661 (743)
T COG5369         585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P  661 (743)
T ss_pred             hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence            78888887765554444333 23444444444321           112233333333334433322222111100   1


Q ss_pred             HHHHhhcC--CCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          331 CLLNLLSG--NYKKSIKKEACWTVSNITA---G------NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       331 ~L~~lL~~--~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      .+-.+=..  ..+.++-.+..|.+.|+.-   +      +.+.++.+.+.|+-+.|..+...+++.||..+-.||.++
T Consensus       662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            11111111  1134567778888888643   2      236677888888888888888878899999999999887

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=5.2e-05  Score=68.68  Aligned_cols=268  Identities=17%  Similarity=0.141  Sum_probs=165.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      ..-++.++.+.+ |.++..|+..+..++..   ..+.+..  .-.++.+.+++....+  .+.|+.+|.|++.+.. .|+
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence            345789999988 99999999999999885   2222222  2457788888877555  7789999999987765 677


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh-------hhhchHHHHHHhhcCC-C-hhHHHHHHHH
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-------QVSPALPALAHLIHSN-D-DEVLTDACWA  266 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-------~~~~~l~~L~~ll~~~-d-~~v~~~a~~~  266 (530)
                      .++.. ++..++..+ .++...+....|..|+|+++........       ...+++.....+...+ + ..-..+....
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            77766 777777777 6666778888999999999986322211       1133444444444433 1 1233556667


Q ss_pred             HHHhccCChHHHHHHHHhCc--HHHHHHhhCCCCchhH-HHHHHHHhHhhcCCchhhHHHhh--cCchHHHH--------
Q 009622          267 LSYLSDGTNDKIQAVIEAGV--FPRLAEFLMHPSPSVL-IPALRTVGNIVTGDDMQTQCVIE--YQALPCLL--------  333 (530)
Q Consensus       267 l~~l~~~~~~~~~~~~~~~~--i~~L~~lL~~~~~~~~-~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~--------  333 (530)
                      +.+++.....+ ..+.....  .+.+..+-. .+..+| .-.+.+|.|++.....+- .+++  ..++|.++        
T Consensus       156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccc
Confidence            78887655443 22333222  233444333 344444 345677888776444332 2222  12233322        


Q ss_pred             -------------HhhcC----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHH
Q 009622          334 -------------NLLSG----NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAIS  395 (530)
Q Consensus       334 -------------~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~  395 (530)
                                   ++|-.    ..++.+|+.-.-+|--+|+. ...++.+...|+.|.+-++-+.. +++++. ++.-+.
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vv  310 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVV  310 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHH
Confidence                         33321    12788999999999998875 45667777888888777766555 455555 444444


Q ss_pred             Hhhc
Q 009622          396 NATS  399 (530)
Q Consensus       396 nl~~  399 (530)
                      ++..
T Consensus       311 q~Lv  314 (353)
T KOG2973|consen  311 QMLV  314 (353)
T ss_pred             HHHH
Confidence            4444

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.39  E-value=3e-05  Score=75.29  Aligned_cols=315  Identities=18%  Similarity=0.161  Sum_probs=194.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      +.+...+-+++.+++..|.+.+|.++..  ....+.+.+.++--.++.-|..++ +..-+++|+..+..+..-.. ..+ 
T Consensus        28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~-  103 (371)
T PF14664_consen   28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK-  103 (371)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence            4444455566699999999999999876  567888888886666667776543 35668899999888877421 111 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      .+..|++..++.+..+++..++..|+.+|+.++-.+|.   .+...|++..+++.+.+ +..++...++.++..+...+.
T Consensus       104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence            12457789999999999999999999999999988874   67889999999999954 444588899999999998875


Q ss_pred             CCChhhhhchHHHHHH-hhcC------CCh--hHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCCCCchhHHH
Q 009622          235 QPPFDQVSPALPALAH-LIHS------NDD--EVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPSVLIP  304 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~-ll~~------~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~~~~~  304 (530)
                      .+......--+..+.. +...      ++.  +....+..++..+...=+........ ...+..|+..|..+++.++..
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            5543333222332222 2221      122  34455555555554332222111111 146788999999999999999


Q ss_pred             HHHHHhHhhcCCc-hhhHHHh------hcCchHHHHHhhc--CCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHH
Q 009622          305 ALRTVGNIVTGDD-MQTQCVI------EYQALPCLLNLLS--GNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGP  374 (530)
Q Consensus       305 a~~~L~nl~~~~~-~~~~~~~------~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~  374 (530)
                      .+.++..+..-.. .......      ..|-...-..+..  .+........+ .--.++..+ ..-....+++.|+++.
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~~  338 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLLAILIEAGLLEA  338 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHHHHHHHcChHHH
Confidence            9988888764322 1111111      1111100000000  00000000000 000111110 0112234568999999


Q ss_pred             HHHHHhcC-chhHHHHHHHHHHHhhc
Q 009622          375 LVALLENA-EFDIKKEAAWAISNATS  399 (530)
Q Consensus       375 L~~ll~~~-~~~v~~~a~~aL~nl~~  399 (530)
                      |++++.+. +..+...|...|+.+..
T Consensus       339 L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  339 LVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            99999887 88899999988887654

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.35  E-value=1e-05  Score=63.74  Aligned_cols=153  Identities=10%  Similarity=0.034  Sum_probs=122.6

Q ss_pred             chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009622          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK  407 (530)
Q Consensus       328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~  407 (530)
                      .+..|+.-+....+.+.+.....-|.|++. +|.+...+.+.+++..+++.+...+..+...++.+|||++.  ++...+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            345555555555477888888888888865 46777888899999999999999999999999999999998  667888


Q ss_pred             HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009622          408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  487 (530)
Q Consensus       408 ~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~  487 (530)
                      .+.+.+.++.++..++++...++..++.++..+...+..           .+..+-..-.++.++....+.+.+....|.
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-----------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~  162 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-----------ERDELLSPAVVRTVQRWRESKSHDERNLAS  162 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-----------hhHHhccHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999999999999988888888777765544332           466666677778888877777888888888


Q ss_pred             HHHHHhC
Q 009622          488 KLLETYW  494 (530)
Q Consensus       488 ~il~~~~  494 (530)
                      ..++++-
T Consensus       163 ~fl~~~~  169 (173)
T KOG4646|consen  163 AFLDKHV  169 (173)
T ss_pred             HHHHhhc
Confidence            8887663

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.34  E-value=0.00033  Score=68.38  Aligned_cols=250  Identities=27%  Similarity=0.296  Sum_probs=171.9

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.+++.+.+.++.++..|+..+..+...            ..++.+..++.+.+ +.++..|+.+|+.+-.  +   
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P---  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence            3678899999999999999999997765432            25899999999998 8999999998887664  2   


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCc------------hhHH
Q 009622          153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK------------LSML  219 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~------------~~~~  219 (530)
                            ..++.|+.++. +++..++..+.++|+.+-..           ..+.+++..+. +..            ..++
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~-~~~~~~a~~~~~~~~~~~r  166 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQ-DEDSGSAAAALDAALLDVR  166 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhc-cchhhhhhhhccchHHHHH
Confidence                  34678888888 58899999999999987321           13677777773 322            1234


Q ss_pred             HHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc
Q 009622          220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP  299 (530)
Q Consensus       220 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~  299 (530)
                      ..+...+..+-.          ....+.+..++...+..++..+..+++.+....         ..+.+.+...+.+.++
T Consensus       167 ~~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~  227 (335)
T COG1413         167 AAAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESL  227 (335)
T ss_pred             HHHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCH
Confidence            444444444332          334667777787777888888888888776544         2345677778888888


Q ss_pred             hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009622          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL  379 (530)
Q Consensus       300 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  379 (530)
                      .++..++..++.+...           ..+..+...+... +..++..+...+...  ..         ......+...+
T Consensus       228 ~vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~  284 (335)
T COG1413         228 EVRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLL  284 (335)
T ss_pred             HHHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHh
Confidence            8888888888876542           2355666777766 655555544444311  10         01234455556


Q ss_pred             hcCchhHHHHHHHHHHHhhcC
Q 009622          380 ENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       380 ~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      .+.+..++..+..++......
T Consensus       285 ~~~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         285 IDEANAVRLEAALALGQIGQE  305 (335)
T ss_pred             hcchhhHHHHHHHHHHhhccc
Confidence            666677777777777776654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.32  E-value=0.00025  Score=69.00  Aligned_cols=318  Identities=15%  Similarity=0.080  Sum_probs=193.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChh
Q 009622          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFD  239 (530)
Q Consensus       161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~  239 (530)
                      .+.+..++-+++.+++..+.+++..+..+... -..+.+.+.-..++.-+.. ..+..=+.+|+..+..+...... ...
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence            34444444445599999999999998887764 4455565554445555533 23445567888888888776422 223


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  319 (530)
                      .-.+++..++.+..+.++..+..++.+++.++-.+++   .+...|++..|.+.+.++...+....+.++..+.. .+..
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRT  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccch
Confidence            4577888999999999999999999999999877664   46788999999999988766677888888888876 4444


Q ss_pred             hHHHhhcCchHHHHHhhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHHHHHHHhcCchhHHHHH
Q 009622          320 TQCVIEYQALPCLLNLLSGN------YKK--SIKKEACWTVSNITAGNREQIQAVIEA-NIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      ++.+...--++.++.-+.+.      .+.  +.-..+..++..+...=+..+-...+. ..+..|+..|..+.+++|...
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I  260 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI  260 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence            44444433344444444332      022  233444555555544211111111121 468889999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHH------HcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHh
Q 009622          391 AWAISNATSGGTHEQIKFLV------IQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI  462 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~------~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~  462 (530)
                      +..+..+..-..+.......      ..|-...-.++..  .+.......--..-.+++.....          -..-.|
T Consensus       261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a----------Lll~il  330 (371)
T PF14664_consen  261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA----------LLLAIL  330 (371)
T ss_pred             HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH----------HHHHHH
Confidence            99999998755433222211      1111100000000  00000000000000011111110          134557


Q ss_pred             hhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Q 009622          463 DDAEGLEKIESLQTHD-NAEIYEKSVKLLETYW  494 (530)
Q Consensus       463 ~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~  494 (530)
                      .++|.++.|.++.... ++.+..+|.-++.+++
T Consensus       331 i~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  331 IEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            7799999999997665 9999999999988764

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=0.0024  Score=58.64  Aligned_cols=277  Identities=16%  Similarity=0.110  Sum_probs=183.4

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc--hhhh--hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--RCRD--LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~--~~~~--~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      +..+.|-.-|..++..++..++..++.|..+++  ....  .++..++++.++..+ ...|.++...+...+..++..+.
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesikrialfpa  160 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESIKRIALFPA  160 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcHH
Confidence            445666677777888899999999999987776  2222  344788899999999 78889999999999999988753


Q ss_pred             CCChhhhhchHHH--HHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhH
Q 009622          235 QPPFDQVSPALPA--LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGN  311 (530)
Q Consensus       235 ~~~~~~~~~~l~~--L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~n  311 (530)
                      .....+....+..  +..+-...+.-++...+..+..+.+-++.......++|++..|..-|+. .+.-++..++.....
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            3333332333221  2223333455667777888888888787777878888999988887776 566788888888888


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcC------CHHHH-HHHHHhCcHHHHHHHHhcCc
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAG------NREQI-QAVIEANIIGPLVALLENAE  383 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~------~~~~~-~~l~~~~~i~~L~~ll~~~~  383 (530)
                      ++. ..+..+.+.+.|++..+..++.... +|--+..+....+.+...      +++.+ ..++  -.+...++++...|
T Consensus       241 Lae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnD  317 (524)
T KOG4413|consen  241 LAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMND  317 (524)
T ss_pred             HHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCC
Confidence            875 4555667778899999999997542 444444455555554431      22221 1111  13556667778889


Q ss_pred             hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC--hHH-HHhccCCCChHHHHHHHHHHHHHH
Q 009622          384 FDIKKEAAWAISNATSGGTHEQIKFLVIQGC--IKP-LCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       384 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~--l~~-L~~lL~~~~~~v~~~al~~l~~ll  441 (530)
                      ++.+..|..+++.+-...  +....+...|-  ... +.+..+.+...-+..++.+|.++.
T Consensus       318 pdaieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  318 PDAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             chHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence            999999999999987743  44444444443  222 233333332223445555555554

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.0009  Score=67.35  Aligned_cols=297  Identities=13%  Similarity=0.136  Sum_probs=180.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .+..+.+-|.|.|+..+..|++++.++.+.   +..+.+. .. ++   ++|-+++ .+-++..|+.||..+-..+++..
T Consensus       112 vin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~-~D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~  183 (938)
T KOG1077|consen  112 VINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFA-DD-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV  183 (938)
T ss_pred             HHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhh-hh-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc
Confidence            344555566788898899999999988654   2222221 12 33   5555544 35788999999999998766532


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc----------------CCCch
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----------------GQPKL  216 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~----------------~~~~~  216 (530)
                      .   ..+....++++|.+.+-.+...+...+.-|+...|+.-.     ++++.-+..|.                .-+.+
T Consensus       184 ~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTyy~vP~P  255 (938)
T KOG1077|consen  184 N---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAP  255 (938)
T ss_pred             C---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhceeecCCCh
Confidence            2   235678889999887777778888888888766554322     22222222221                11345


Q ss_pred             hHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC----CC---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 009622          217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----ND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR  289 (530)
Q Consensus       217 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~----~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~  289 (530)
                      -+...++..|.++-.............++..++...+.    .+   ......++.-..+++..-+..-..+.  ..+..
T Consensus       256 WL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~  333 (938)
T KOG1077|consen  256 WLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQ  333 (938)
T ss_pred             HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHH
Confidence            66777777777662222222222333344444333331    11   11122223323333322221112222  45778


Q ss_pred             HHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 009622          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIE  368 (530)
Q Consensus       290 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~  368 (530)
                      |-++|.+.+..+|.-|+..++.+++..... +.+-.+  .+.++..|+...|..+|+.|...|-.+|.. +..       
T Consensus       334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak-------  403 (938)
T KOG1077|consen  334 LGQFLSHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK-------  403 (938)
T ss_pred             HHHHhhcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHH-------
Confidence            999999999999999999999999864322 233222  788888998555899999999999999873 322       


Q ss_pred             hCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          369 ANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       369 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                       .++..|++.+.+.++.+|++...=+.-++.
T Consensus       404 -~IV~elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  404 -QIVAELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             -HHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence             256678888888888888877655554443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.0027  Score=64.05  Aligned_cols=325  Identities=17%  Similarity=0.142  Sum_probs=189.0

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      -+-+++|.++--...+.+--.+.-++..+ .+..+.     ++..+-+=|.+.+ +.....|+.+++|+.+  -+.+..+
T Consensus        77 mEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~  147 (938)
T KOG1077|consen   77 MEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAF  147 (938)
T ss_pred             HHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHh
Confidence            34556666644333333433344333221 233333     2344555555666 7888999999999886  4454444


Q ss_pred             HhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          156 IDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       156 ~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .  .-|+   ++|-+  ...-++..++.+|..|-...|..   +-..+....++.+| ++.+-.+..++...+..|+...
T Consensus       148 ~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~  218 (938)
T KOG1077|consen  148 A--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKN  218 (938)
T ss_pred             h--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcC
Confidence            3  1234   55544  33568888888998888776642   33345678889999 6666777777788887787765


Q ss_pred             CCCChhhhhchHHHHHHhhc-------------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC---
Q 009622          234 PQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---  297 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---  297 (530)
                      +..-.......+..|.....             -+.|.++...++.|.++-...+.-.. ..-..+++.++...+..   
T Consensus       219 p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~  297 (938)
T KOG1077|consen  219 PESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKS  297 (938)
T ss_pred             CHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccc
Confidence            43322222223333322221             13577888888888887432221111 11113444444444321   


Q ss_pred             -C---chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009622          298 -S---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (530)
Q Consensus       298 -~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (530)
                       +   .......+.-.-+++..-+..-+.+  ...+..|-.+|.+. +..+|.-|...++.++...+ ....+-..  ..
T Consensus       298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~h--~d  371 (938)
T KOG1077|consen  298 KKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SIDAVKKH--QD  371 (938)
T ss_pred             cchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHHHHHHH--HH
Confidence             1   1122222333334443333222222  24577888888888 88999999999998887522 22222222  66


Q ss_pred             HHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622          374 PLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  433 (530)
Q Consensus       374 ~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a  433 (530)
                      .++..|+ ..|..+|+.|+..|..++...+.+.        ++..|++.|..-|+.+++-.
T Consensus       372 ~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------IV~elLqYL~tAd~sireei  424 (938)
T KOG1077|consen  372 TIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------IVAELLQYLETADYSIREEI  424 (938)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------HHHHHHHHHhhcchHHHHHH
Confidence            7788888 5689999999999999998654332        45667777777777766643

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.20  E-value=4.1e-06  Score=53.08  Aligned_cols=41  Identities=41%  Similarity=0.674  Sum_probs=38.0

Q ss_pred             CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      ++++++.+++.|++|.|+.+|.+++++++++|+|+|.|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.20  E-value=3.5e-06  Score=53.41  Aligned_cols=41  Identities=41%  Similarity=0.863  Sum_probs=38.1

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC
Q 009622          148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (530)
Q Consensus       148 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~  188 (530)
                      ++++++.+++.|++|.|+++|++.+.++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.19  E-value=0.0045  Score=62.06  Aligned_cols=347  Identities=16%  Similarity=0.138  Sum_probs=198.0

Q ss_pred             HHHHHhhcCCCh---HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           76 PVMVAGVWSNDS---GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        76 ~~l~~~l~s~~~---~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      |.++..|.++++   ......+.+|..++..  .+-.+.++ ..++..+........+.+....++.+|..+.....+..
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~   78 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK   78 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence            566667765544   4566778888887644  23333322 24555555555444346777778888888766432222


Q ss_pred             -----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---------
Q 009622          153 -----KVVIDHGAVPIFVKLLYS-----P--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------  211 (530)
Q Consensus       153 -----~~~~~~g~i~~L~~lL~~-----~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---------  211 (530)
                           ....+..+++.+....-.     .  +..+.+.+...+..+...-+.-++.-    .+..+..+..         
T Consensus        79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence                 223333477777776632     1  24566666666666665444322221    1223333321         


Q ss_pred             --CC----CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccC--ChHHHHHHH
Q 009622          212 --GQ----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDG--TNDKIQAVI  282 (530)
Q Consensus       212 --~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~--~~~~~~~~~  282 (530)
                        ..    .......-...+++.+-   +.........++..++.+..+ .++..+..++.+++.++..  .++...   
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLR---KDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCC---cccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence              00    11112222223333332   333322344577777776554 4577788888888888754  222222   


Q ss_pred             HhCcHHHHHHhh-CCCCchhHHHHHHHH----hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          283 EAGVFPRLAEFL-MHPSPSVLIPALRTV----GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       283 ~~~~i~~L~~lL-~~~~~~~~~~a~~~L----~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                        +++..+...+ .......+..++.++    -.+........     ..++..|+.++.+   +.+...|+..++-+..
T Consensus       229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~---~~~g~~aA~~f~il~~  298 (415)
T PF12460_consen  229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS---PELGQQAAKAFGILLS  298 (415)
T ss_pred             --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence              3344444444 233344444444444    33332222222     2346678888875   5778888888888877


Q ss_pred             CCHH--------HHHHHHHh----CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622          358 GNRE--------QIQAVIEA----NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP  425 (530)
Q Consensus       358 ~~~~--------~~~~l~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~  425 (530)
                      ..++        .++.+.+.    .++|.|++.....+...+...+.||.++..+........ .-..+++.|++.|+.+
T Consensus       299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~  377 (415)
T PF12460_consen  299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP  377 (415)
T ss_pred             CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence            6333        23333332    357788887777777799999999999999765333222 1235788899999999


Q ss_pred             ChHHHHHHHHHHHHHHhhhhh
Q 009622          426 DPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       426 ~~~v~~~al~~l~~ll~~~~~  446 (530)
                      |++++..++.+|..++...+.
T Consensus       378 ~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  378 DADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             CHHHHHHHHHHHHHHHHcCHH
Confidence            999999999999999877643

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.18  E-value=1.8e-05  Score=62.40  Aligned_cols=115  Identities=16%  Similarity=0.131  Sum_probs=100.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +.+..|+.-.....+.+.+++...-|+|.+. +|.+...+.+..++..++.-|..++..+++.++..|+|+|.+.. ..+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence            3456666655554448999999999999998 78888899999999999999999999999999999999998876 677


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .+.+.++++.++..+ .++...+..+++.++..|+.+.
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            888999999999999 8888888999999999999876

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=7.1e-05  Score=74.46  Aligned_cols=245  Identities=14%  Similarity=0.137  Sum_probs=153.7

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH---HHhhhhccCC---CCCC
Q 009622          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGK---PQPP  237 (530)
Q Consensus       164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~---~~L~~L~~~~---~~~~  237 (530)
                      |..+..+.+..++.+|+.+|..|.... ...+.     .....++++ .+.+..++..|+   |.++|.+-.+   ....
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            566666667777777777766665422 12222     344556777 777888888874   5555555221   1222


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC--
Q 009622          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG--  315 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~--  315 (530)
                      ......++..+...+..-.-.|+..+..+|+.+...+++.+...++..++..+-..-...   -+-..+..=|..++|  
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCcc
Confidence            334456677777888777888899999999988777777776666655444222110000   011111111111111  


Q ss_pred             ---------CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009622          316 ---------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (530)
Q Consensus       316 ---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  386 (530)
                               .++....++.+|+-..++.-|.++ -.+||+.|...++.++...|.....     .+..|++++++....|
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~V  426 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVV  426 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHH
Confidence                     223444577888888888888877 7899999999999999876654333     4668999999888899


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009622          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT  431 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~  431 (530)
                      |..|..+|..++.+..       ++...++.++..|.+..++++.
T Consensus       427 RL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe  464 (823)
T KOG2259|consen  427 RLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVRE  464 (823)
T ss_pred             HHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHH
Confidence            9999999999987642       1222344444555554544444

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.00089  Score=67.89  Aligned_cols=326  Identities=14%  Similarity=0.111  Sum_probs=174.9

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChH
Q 009622          125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV  204 (530)
Q Consensus       125 l~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~  204 (530)
                      |++++ .-+|-..++.|+.+-.  ++...     ..+|.+...|.+.+.-+|.+|..++..|-.....   .  -.++-.
T Consensus       108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L--~pDape  174 (948)
T KOG1058|consen  108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---L--IPDAPE  174 (948)
T ss_pred             ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---h--cCChHH
Confidence            34444 5566666666655543  33322     4578888999999999999999998888543211   1  112233


Q ss_pred             HHHHhhcCCCchhHHHHHHHHhhhhc---------cCC---CCC------------------ChhhhhchHHHHHHhhcC
Q 009622          205 PLLAQLNGQPKLSMLRNATWTLSNFC---------RGK---PQP------------------PFDQVSPALPALAHLIHS  254 (530)
Q Consensus       205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~---------~~~---~~~------------------~~~~~~~~l~~L~~ll~~  254 (530)
                      .+-..|....|+...++|...|...-         ...   +.-                  ........+..+..+|.+
T Consensus       175 Li~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~s  254 (948)
T KOG1058|consen  175 LIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSS  254 (948)
T ss_pred             HHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhc
Confidence            33344445566666666655443221         110   000                  000112233444455555


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHH
Q 009622          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL  333 (530)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~  333 (530)
                      .++.++..+..+|..++..+... ..     ....++.++.. ++..+..-.+.-|..+...+..    + -.|++--++
T Consensus       255 tssaV~fEaa~tlv~lS~~p~al-k~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~----i-l~~l~mDvL  323 (948)
T KOG1058|consen  255 TSSAVIFEAAGTLVTLSNDPTAL-KA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK----I-LQGLIMDVL  323 (948)
T ss_pred             CCchhhhhhcceEEEccCCHHHH-HH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH----H-HHHHHHHHH
Confidence            55555555555555554433221 11     11222222221 1222222223333333321111    1 124455567


Q ss_pred             HhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009622          334 NLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       334 ~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      .+|.++ +-++|+.+......++. .+.+.+-.+++..+...--. =...+.+.|+.-..++..++..- ++...     
T Consensus       324 rvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F-p~~aa-----  395 (948)
T KOG1058|consen  324 RVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF-PEVAA-----  395 (948)
T ss_pred             HHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-hHHHH-----
Confidence            788888 99999999888777776 45554444443322221111 01124567888888888887753 34333     


Q ss_pred             CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHH-HHHHhcCCCHHHHHHHHHHHH
Q 009622          413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQTHDNAEIYEKSVKLLE  491 (530)
Q Consensus       413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~~~~v~~~a~~il~  491 (530)
                      .+++.|++.+.+.++......+..+...++..++..           ..+     +++ ++.+-.-....++.-|.+|+-
T Consensus       396 tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-----------~~i-----i~~l~~~~~~irS~ki~rgalwi~G  459 (948)
T KOG1058|consen  396 TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-----------ASI-----IEKLLETFPQIRSSKICRGALWILG  459 (948)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-----------HHH-----HHHHHHhhhhhcccccchhHHHHHH
Confidence            468899999999998877777777777776665422           111     222 233344466777888888888


Q ss_pred             HhCCCCC
Q 009622          492 TYWLDDE  498 (530)
Q Consensus       492 ~~~~~~~  498 (530)
                      .|.+.+.
T Consensus       460 eYce~~~  466 (948)
T KOG1058|consen  460 EYCEGLS  466 (948)
T ss_pred             HHHhhhH
Confidence            8876555

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.0012  Score=72.03  Aligned_cols=317  Identities=17%  Similarity=0.179  Sum_probs=189.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh--
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--  193 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~--  193 (530)
                      .+||.|.++=-+++ +.+|..-..+...+..++....+... ..++.-|+.-|.+..+++|+.++.+|..|..+.+..  
T Consensus       998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen  998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred             HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence            46888888877787 89998888888888886555555544 356777888888888999999999999999776531  


Q ss_pred             hhhHhhcCChHHHHHhhcCCCchhHHHH---HHHHhhhhccCC-----CCCChhhhhchHHHHHH-hhcCCChhHHHHHH
Q 009622          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRN---ATWTLSNFCRGK-----PQPPFDQVSPALPALAH-LIHSNDDEVLTDAC  264 (530)
Q Consensus       194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~---a~~~L~~L~~~~-----~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~  264 (530)
                      .+.+.  .....+.+.. ++-.+.++..   ++.+++.+|-..     +.........++|.|+. .+-+.-++++.-++
T Consensus      1076 ~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred             HHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence            22222  1333344444 4445555554   455566555433     12223344556665543 22255688999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhH-----------HHHHHHHh-HhhcCCchh--hHHH-------
Q 009622          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL-----------IPALRTVG-NIVTGDDMQ--TQCV-------  323 (530)
Q Consensus       265 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~-----------~~a~~~L~-nl~~~~~~~--~~~~-------  323 (530)
                      .++..++......+..... .+++.|+...+.-++.+.           ..|+..+. +.+.+++..  ....       
T Consensus      1153 ~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred             HHHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence            9999999876654443322 566666666665544432           22222221 122222211  1111       


Q ss_pred             hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009622          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  403 (530)
Q Consensus       324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~  403 (530)
                      +-...+|.+.++++.+-.-..|..++..++-++.......... -..++..++..+++.++.+++.-..|.+.++....+
T Consensus      1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred             HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence            1135677788888776455666677777776654211111011 112466777777888899999999999999998888


Q ss_pred             HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          404 EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       404 ~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ++.+.+++.    .+..++...++ ....++..+.+|..+.
T Consensus      1311 dq~qKLie~----~l~~~l~k~es-~~siscatis~Ian~s 1346 (1702)
T KOG0915|consen 1311 DQMQKLIET----LLADLLGKDES-LKSISCATISNIANYS 1346 (1702)
T ss_pred             HHHHHHHHH----HHHHHhccCCC-ccchhHHHHHHHHHhh
Confidence            888876432    23333332222 1144555555555444

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.16  E-value=0.00057  Score=66.68  Aligned_cols=215  Identities=26%  Similarity=0.340  Sum_probs=152.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      ..++.+.+++.+.+ +.++..|++.++.+..           .-+++.+..++.+.++.++..++.+|+.+-  .+    
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP----  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence            35888999999987 8999999999766554           235789999999999999999999998872  22    


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh------------hHHHHH
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD------------EVLTDA  263 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~------------~v~~~a  263 (530)
                           ..++.++.++..+.+..++..+.++|..+-...          .+..++..+.....            .++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 267889999955789999999999999886642          25555666655442            233334


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchh
Q 009622          264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS  343 (530)
Q Consensus       264 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  343 (530)
                      ...++.+..           ...++.+...+.+....++..+..+++.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            444433321           134566777777777788888888888877644         23456777777777 888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009622          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (530)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  395 (530)
                      +|..++..++.+-...           .++.++..+...+..++..+..++.
T Consensus       229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhc
Confidence            8888888887774321           4556677777777666666665555

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.00013  Score=72.54  Aligned_cols=220  Identities=14%  Similarity=0.122  Sum_probs=145.9

Q ss_pred             HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---h--HH-HH
Q 009622          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---N--DK-IQ  279 (530)
Q Consensus       206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---~--~~-~~  279 (530)
                      +..+. .+.|..++..|+.++..|..+..     ....+....++++..++..|+..|+..+.-.....   .  +. ..
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~k-----L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGFK-----LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhccccc-----ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 77788888999988888877431     22345566778888888999998865554443221   1  11 11


Q ss_pred             HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH--hc
Q 009622          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI--TA  357 (530)
Q Consensus       280 ~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~  357 (530)
                      .+.+ .++..+...+.+.++.+|..|..+||.+-.-+++.....++..++..+-..-...      +......++-  .+
T Consensus       277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSs  349 (823)
T KOG2259|consen  277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSS  349 (823)
T ss_pred             hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCccc
Confidence            2233 5778899999999999999999999998876666655555443333222111111      1111111111  11


Q ss_pred             C-----------CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009622          358 G-----------NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD  426 (530)
Q Consensus       358 ~-----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~  426 (530)
                      |           ..+.-..++..|.--.++.-+.+.=.+||+.|+..++.++... |.+...     .+..|++++.++.
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHH
Confidence            1           1122334566777778888888777899999999999999853 333322     5889999999999


Q ss_pred             hHHHHHHHHHHHHHHhhh
Q 009622          427 PRIVTVCLEGLENILKVG  444 (530)
Q Consensus       427 ~~v~~~al~~l~~ll~~~  444 (530)
                      ..|+..++.+|..|....
T Consensus       424 ~~VRL~ai~aL~~Is~~l  441 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVHL  441 (823)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999988764

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.13  E-value=0.00025  Score=64.53  Aligned_cols=239  Identities=16%  Similarity=0.130  Sum_probs=147.7

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHH
Q 009622          246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCV  323 (530)
Q Consensus       246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~  323 (530)
                      ..|-++++.-++-.+.-|..++.++....+.+.....+...-.+++.++++.  ...++...+.++.-+.. +++..+.+
T Consensus       152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi  230 (432)
T COG5231         152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDI  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHH
Confidence            3344445444555666677888887765554433333444556777777763  45788888888887775 44343222


Q ss_pred             hh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhC-cHHHHHHHHhcC--chhHHHHHHHHHHHhh
Q 009622          324 IE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN-IIGPLVALLENA--EFDIKKEAAWAISNAT  398 (530)
Q Consensus       324 ~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~-~i~~L~~ll~~~--~~~v~~~a~~aL~nl~  398 (530)
                      -+ ...+.-++.+.+..-...|-+-+|.++.|++.. ....+..+.-.| +.+..--++...  |.+++...-..=..+.
T Consensus       231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            11 234566666666553667888899999999883 334444444334 555444444333  4555443322222111


Q ss_pred             cCC-----------------------------CHHHHHHHHHc--CChHHHHhccCCCChH-HHHHHHHHHHHHHhhhhh
Q 009622          399 SGG-----------------------------THEQIKFLVIQ--GCIKPLCDLLVCPDPR-IVTVCLEGLENILKVGEA  446 (530)
Q Consensus       399 ~~~-----------------------------~~~~~~~l~~~--~~l~~L~~lL~~~~~~-v~~~al~~l~~ll~~~~~  446 (530)
                      ...                             -......+...  .++..|..+++.+++. ....|+.-+..+++..+.
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE  390 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE  390 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence            100                             11233444433  3467777888776665 555677777777766654


Q ss_pred             hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009622          447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                                 ....+...|+-+.|.+|++|+|++|+--|.+.++.+.++
T Consensus       391 -----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         391 -----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             -----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence                       477788899999999999999999999999998887654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.11  E-value=0.0007  Score=68.02  Aligned_cols=265  Identities=17%  Similarity=0.133  Sum_probs=169.1

Q ss_pred             HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009622           94 TTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (530)
Q Consensus        94 ~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  164 (530)
                      +.+|+- ++.+ ......++....+..|.++-         ....++.+..+|++||+|+...++..+..+++.|..+.+
T Consensus         2 L~~LRi-LsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRI-LSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHH-HccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            344553 3443 33444555444566666655         233348999999999999999999999999999999999


Q ss_pred             HHhhCCC-----CHHHHHHHHHHHHhhhCCCchhhhhHhhc-CChHHHHHhhc---------CC-------CchhHHHHH
Q 009622          165 VKLLYSP-----SDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPLLAQLN---------GQ-------PKLSMLRNA  222 (530)
Q Consensus       165 ~~lL~~~-----~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-~~i~~Ll~ll~---------~~-------~~~~~~~~a  222 (530)
                      +..|+..     +.++.-...++|--++...+..+..+.+. +++..++..+.         ..       .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999875     67788888888887777777777666554 56666666552         01       245567778


Q ss_pred             HHHhhhhccCCCCCCh----hhhhchHHHHHHhh---cC--CChhHHHHHHHHHHHhccCChHH-----------HHHHH
Q 009622          223 TWTLSNFCRGKPQPPF----DQVSPALPALAHLI---HS--NDDEVLTDACWALSYLSDGTNDK-----------IQAVI  282 (530)
Q Consensus       223 ~~~L~~L~~~~~~~~~----~~~~~~l~~L~~ll---~~--~d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~  282 (530)
                      +.++.|+....+....    .....++..+..++   .+  +.......++.+|.++--.....           .....
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            8888998877644333    22334444444442   11  12456677777777763211111           00011


Q ss_pred             HhCcHHHHHHhhCC----C----CchhHHHHHHHHhHhhcCCchhhHHHh----------------hcCchHHHHHhhcC
Q 009622          283 EAGVFPRLAEFLMH----P----SPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSG  338 (530)
Q Consensus       283 ~~~~i~~L~~lL~~----~----~~~~~~~a~~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~  338 (530)
                      ....+..|+.+|..    .    -.....+.+.+|.+++..+...++.+-                ...+-..|+.++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            12345666666543    1    135778889999999887654444332                12466778888888


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHH
Q 009622          339 NYKKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      . .+.++..++..+-.+|..+..
T Consensus       320 ~-~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  320 P-DPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             C-CchHHHHHHHHHHHHHhhhHH
Confidence            8 588888888888888765544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=0.00016  Score=72.85  Aligned_cols=264  Identities=18%  Similarity=0.217  Sum_probs=153.2

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      +...|.+.|++.+++.+++-++.-|+-..-++...       .+...|-..|..++.-.-+.|...++-+.-++..    
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~----  482 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN----  482 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----
Confidence            44455555555544556666555554444332211       1124445555555444555555555544332221    


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH--HhccCC
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS--YLSDGT  274 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~--~l~~~~  274 (530)
                         ..++..++..-.......+.+...--++-...+.       ..+.=+.+-.++.+.|+-++.....++.  +.....
T Consensus       483 ---~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn  552 (929)
T KOG2062|consen  483 ---QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN  552 (929)
T ss_pred             ---HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence               1123334444433334445444333332222221       1234455667777788888777665543  332222


Q ss_pred             hHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622          275 NDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       275 ~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      .         +++..|+.. +++.+.++++.|+.+||-++..++++         ++..+.+|..++++.||..++.+|+
T Consensus       553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG  614 (929)
T KOG2062|consen  553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG  614 (929)
T ss_pred             h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence            2         556777777 67789999999999999999877755         5677788887779999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChH
Q 009622          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR  428 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~  428 (530)
                      -.|+++...       ..+..|-.+..++..-||+.|+.++.-+....++..+...  .++.+.+.+.+.+++.+
T Consensus       615 IaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  615 IACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHED  680 (929)
T ss_pred             hhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhH
Confidence            999864321       1334444555666778999999999988775543333321  23455555555555444

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.00029  Score=76.62  Aligned_cols=336  Identities=12%  Similarity=0.116  Sum_probs=194.7

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CChhhHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS-GTSEHTK  153 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~  153 (530)
                      ..+...+.+.+|..+..++..|..+...-. .+.+.. ....+...+.++|.+.+ .-.|.-|.+-|+-+-. ++....+
T Consensus       821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l-~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~  898 (1702)
T KOG0915|consen  821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVL-MLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK  898 (1702)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhh-ccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence            444456678999998877765554443321 233322 22345688899998877 7788888877665433 2333443


Q ss_pred             HHHhCCChHHHHHhhCC---------CCHHHHH-------------HHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009622          154 VVIDHGAVPIFVKLLYS---------PSDDVRE-------------QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~---------~~~~~~~-------------~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~  211 (530)
                      .+     +..|+.-|-.         .+.++.+             ..-.=|+|||.+-.       +...+-.++++.+
T Consensus       899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAn  966 (1702)
T KOG0915|consen  899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLAN  966 (1702)
T ss_pred             HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhh
Confidence            33     3344444321         1111111             11122444443221       1123445566664


Q ss_pred             CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009622          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA  291 (530)
Q Consensus       212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~  291 (530)
                      .+-.-.-+.-|++-+..++.............++|.|...=.+++..|+......-..+..++...+..... .+++.|+
T Consensus       967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL 1045 (1702)
T KOG0915|consen  967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELL 1045 (1702)
T ss_pred             hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHH
Confidence            444455556666677777766544444455677777777777788888665444444444444444443443 7888888


Q ss_pred             HhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH---HHHHHHHhc--CC---HHHH
Q 009622          292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA---CWTVSNITA--GN---REQI  363 (530)
Q Consensus       292 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~--~~---~~~~  363 (530)
                      .-+.+..|.+|+.+|.+|..+..+.+.....-.-..+...+...+++- ...||+.|   +.+|+.++.  .+   ....
T Consensus      1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred             HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence            999999999999999999999998763321111114455556666655 66777654   566666664  11   1112


Q ss_pred             HHHHHhCcHHHHHH--HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009622          364 QAVIEANIIGPLVA--LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT  431 (530)
Q Consensus       364 ~~l~~~~~i~~L~~--ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~  431 (530)
                      +..++ .++|.|++  ++ +.-.+||+-++.++..++.........++  ...++.|.+..+.-++.+..
T Consensus      1125 ~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLn 1190 (1702)
T KOG0915|consen 1125 KEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLN 1190 (1702)
T ss_pred             HHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHH
Confidence            22222 35666655  23 45689999999999999986543322222  24577777777766666554

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.09  E-value=0.00016  Score=65.84  Aligned_cols=229  Identities=15%  Similarity=0.173  Sum_probs=153.6

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhh-
Q 009622          124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLS-  199 (530)
Q Consensus       124 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-  199 (530)
                      +++.-+ +-.+.-|+.|+.++.. .++.|...-. ...-..+..+++.  ....++...+.+++-+..... +.+.+-. 
T Consensus       157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~  233 (432)
T COG5231         157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKM  233 (432)
T ss_pred             HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence            444444 5678889999999998 5666665543 3344567777766  557889999999998875543 4433222 


Q ss_pred             cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCC
Q 009622          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~~  274 (530)
                      ...+.-+++++.......+.+-++.++.|++...|....   .....+.++.-.+++.  .|++++.+.-..=..+....
T Consensus       234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~  313 (432)
T COG5231         234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT  313 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence            235666777776666888999999999999985433221   2223355554444443  36666555433322222111


Q ss_pred             h------------------------------HHHHHHHH--hCcHHHHHHhhCCCCch-hHHHHHHHHhHhhcCCchhhH
Q 009622          275 N------------------------------DKIQAVIE--AGVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       275 ~------------------------------~~~~~~~~--~~~i~~L~~lL~~~~~~-~~~~a~~~L~nl~~~~~~~~~  321 (530)
                      .                              .+...+.+  ..++..|.++++..++. ....||.-++.++...|+...
T Consensus       314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~  393 (432)
T COG5231         314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA  393 (432)
T ss_pred             hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence            1                              01122221  14677888888887766 667788899999999999988


Q ss_pred             HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                      .+.+.|+=..++.++.++ +++|+.+|..++..+.
T Consensus       394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i  427 (432)
T COG5231         394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence            888999999999999999 9999999999887654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.05  E-value=0.00014  Score=77.17  Aligned_cols=268  Identities=15%  Similarity=0.119  Sum_probs=173.5

Q ss_pred             HHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---hh
Q 009622           75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---SE  150 (530)
Q Consensus        75 l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~---~~  150 (530)
                      ++.+...++. ...+.+..|+..|..+...-..+    ..-..++|.++.++.++. ..+|..|+.+|+.+...-   +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----VKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----HHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4455555554 45677888999998886543211    112457999999999988 999999999998877622   22


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC------------------chh-----------hhhHhhc
Q 009622          151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS------------------PRC-----------RDLVLSQ  200 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~------------------~~~-----------~~~i~~~  200 (530)
                      .-..++..-++|.|-.++.+ ....++-.-+..|+.||...                  +..           ...+. .
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~  577 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-H  577 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-H
Confidence            22334445678888888877 44445554455555554211                  100           00000 0


Q ss_pred             CChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 009622          201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA  280 (530)
Q Consensus       201 ~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~  280 (530)
                      ++-.....++ .++++-+++..+..|.-||....  ......-+++.|..+|...|..++..-...|..++-.-..   .
T Consensus       578 ~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---r  651 (1431)
T KOG1240|consen  578 TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---R  651 (1431)
T ss_pred             HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---e
Confidence            1112223334 55566777777777777775431  1122345688888999888888888777777665532111   1


Q ss_pred             HHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       281 ~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      -++..++|.|.+-|.+.++.+...|+.++.-|+...--....+  ..+++....+|-++ +.-+|..++.+|..++.
T Consensus       652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            1344778999999999999999999999999886433222222  24677788888898 99999999999888775

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.05  E-value=1e-05  Score=55.21  Aligned_cols=55  Identities=24%  Similarity=0.610  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      +.+|..|+|+|++++...+....... ..+++.|+.++.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999888777776644 46999999999999899999999999875

...

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.0067  Score=63.82  Aligned_cols=339  Identities=16%  Similarity=0.138  Sum_probs=196.4

Q ss_pred             HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc------CCC-CHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHH
Q 009622           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL------RED-YPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPI  163 (530)
Q Consensus        93 a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~------~~~-~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~  163 (530)
                      |...+..+++..+....     .|+++.+++.+.      .++ ++.-+..|+++++++++--  ....+...+.=+++.
T Consensus       392 a~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h  466 (1010)
T KOG1991|consen  392 ALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH  466 (1010)
T ss_pred             HHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence            45555555544222222     356777778777      222 4667788888888888510  111112222234556


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh---hh
Q 009622          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF---DQ  240 (530)
Q Consensus       164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~  240 (530)
                      +.-.++++.--+|..|+|.++.++...  +.+...-..++....+.+.++.+-.++..|+.+|..+.++.+....   ..
T Consensus       467 VfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h  544 (1010)
T KOG1991|consen  467 VFPEFQSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH  544 (1010)
T ss_pred             hhHhhcCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence            666778888889999999999998433  2222223336677777775688889999999999999888754433   33


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC---CCc---hhHHHHHHHHhHhh
Q 009622          241 VSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH---PSP---SVLIPALRTVGNIV  313 (530)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~---~~~~~a~~~L~nl~  313 (530)
                      +.+.+..|+++.+..+.+.+..++..+ +..+..-......+. ..+.....+++..   .++   .-...|.++|..+.
T Consensus       545 vp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~  623 (1010)
T KOG1991|consen  545 VPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS  623 (1010)
T ss_pred             hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence            456666677777766655555555444 222221111111111 1444555666653   222   22333444443332


Q ss_pred             ---cCCchh--hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622          314 ---TGDDMQ--TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       314 ---~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                         ..-+..  .-.-++..+++.+-.+|.+. -.++-.+++-.+.+++...++.-..+.  |+++.+.+.+.....+.-.
T Consensus       624 Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~  700 (1010)
T KOG1991|consen  624 TILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFT  700 (1010)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHH
Confidence               211111  11123446677788888877 778888899888888775544333333  4788888888888888899


Q ss_pred             HHHHHHHHhhcCCCHHHHHHH-HHcCChHHHHhccCC---CChHHHHHHHHHHHHHHhh
Q 009622          389 EAAWAISNATSGGTHEQIKFL-VIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l-~~~~~l~~L~~lL~~---~~~~v~~~al~~l~~ll~~  443 (530)
                      ...-+|.|++..+.+.....- .-.-++..+..++.+   .|.+. ..+++.+.-++-.
T Consensus       701 d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL~  758 (1010)
T KOG1991|consen  701 DMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDC-ESACKLLEVIILN  758 (1010)
T ss_pred             HHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHHH
Confidence            999999999987765332211 111123344444544   23333 3456666665543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.04  E-value=0.00071  Score=69.48  Aligned_cols=236  Identities=19%  Similarity=0.181  Sum_probs=162.0

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcCC------CchhHHHHHHHHhhhhcc
Q 009622          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~~------~~~~~~~~a~~~L~~L~~  231 (530)
                      +...+.+|+..+.+-+-.++..+.+++...+..   ++.+.+.=+...+-++|...      +....+.-++.+|+.+|.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            566778888877777777888888888655532   23455554556666666421      346678888999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~  310 (530)
                      .+.........+-+|.|+..+.+.+. .+...++.+|..++..++ -.+.+++.|.++.|.+.+.+ .+.....|+.++.
T Consensus        87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~  164 (543)
T PF05536_consen   87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLLL  164 (543)
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence            76555566678889999999988776 999999999999995554 45778999999999999987 5567888999998


Q ss_pred             HhhcCCchhhHH---HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHH----HHhCcHHHHHHHHhcC
Q 009622          311 NIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQAV----IEANIIGPLVALLENA  382 (530)
Q Consensus       311 nl~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l----~~~~~i~~L~~ll~~~  382 (530)
                      +++.........   -.-..+++.+...+... ....+.++|..|+.+....+.. ....    .-..+...+..++.+.
T Consensus       165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr  243 (543)
T PF05536_consen  165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR  243 (543)
T ss_pred             HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence            887654421100   01124566677777666 6677888999999988754211 1111    1123455556666665


Q ss_pred             -chhHHHHHHHHHHHhhc
Q 009622          383 -EFDIKKEAAWAISNATS  399 (530)
Q Consensus       383 -~~~v~~~a~~aL~nl~~  399 (530)
                       .+.-|..++.....+..
T Consensus       244 ~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  244 LTPSQRDPALNLAASLLD  261 (543)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence             45666666665555543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.03  E-value=0.00036  Score=74.22  Aligned_cols=296  Identities=15%  Similarity=0.101  Sum_probs=186.6

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC----CC
Q 009622          161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQ  235 (530)
Q Consensus       161 i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~----~~  235 (530)
                      ++.+...++. .....+..|+..|..++.....   ...-..++|.++.++ .++...++..|+.+|..+...-    +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4556666655 5567788899999888854321   111223788999999 7888999999988888765432    33


Q ss_pred             CChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622          236 PPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~  314 (530)
                      ....+..-++|.|..++.+ ....++...+.+|+.++...    ..+...+.-.....+++..+.+       +...  .
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nse-------t~~~--~  566 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSE-------TAPE--Q  566 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccc-------cccc--c
Confidence            4455667788999999887 45566777777777776432    1122222222222234443332       0000  0


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009622          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                      ......+.+ ..++-.....++.++ ++-||+.-...|+-||.-...   .--+.=++..|+..|++.|+.+|..-...|
T Consensus       567 ~~~~~~~~L-~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI  641 (1431)
T KOG1240|consen  567 NYNTELQAL-HHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSI  641 (1431)
T ss_pred             ccchHHHHH-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence            011112222 224445566677776 778888777777777651100   001223688999999999999998776666


Q ss_pred             HHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH
Q 009622          395 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL  474 (530)
Q Consensus       395 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  474 (530)
                      .-++..-....    ++.++++.|..-|.+.++-|+..|++++..|++.+--.+.        +.     ...++.+.-+
T Consensus       642 ~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~--------~v-----~~i~~~v~Pl  704 (1431)
T KOG1240|consen  642 VGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP--------AV-----KDILQDVLPL  704 (1431)
T ss_pred             cceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH--------HH-----HHHHHhhhhh
Confidence            65544221111    3446788888899999999999999999999988754321        11     2224556667


Q ss_pred             hcCCCHHHHHHHHHHHHHhCC
Q 009622          475 QTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       475 ~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .-|+|.=|+..+..+|-....
T Consensus       705 L~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  705 LCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eeCchHHHHHHHHHHHHHHHh
Confidence            899999999999888876544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.99  E-value=6.8e-05  Score=68.71  Aligned_cols=187  Identities=16%  Similarity=0.233  Sum_probs=118.9

Q ss_pred             hCCCCchhHHHHHHHHhHhhcCC--chhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 009622          294 LMHPSPSVLIPALRTVGNIVTGD--DMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA  369 (530)
Q Consensus       294 L~~~~~~~~~~a~~~L~nl~~~~--~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  369 (530)
                      -.+.+|..+..++..|..++.+.  ......+..  ..++..+...+.+. ...+.+.||.++..++..........++ 
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-   93 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-   93 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence            36678999999999999998876  222222221  15667777777776 7789999999999998743344444433 


Q ss_pred             CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009622          370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN  449 (530)
Q Consensus       370 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~  449 (530)
                      .++|.|++.+.++..-++..|..+|..++....  ....+    .+..+.....+.++.++..++..+..++........
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            578999999998888999999999999999764  11111    156677788999999999999999999876651110


Q ss_pred             cCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          450 LGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .    ... ...+  ......|..+..+.+++|++.|...+..|+.
T Consensus       168 ~----l~~-~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  168 V----LQK-SAFL--KQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             G----G---HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             h----hcc-cchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            0    000 0001  2235677888999999999999999988764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.98  E-value=8.4e-05  Score=68.09  Aligned_cols=186  Identities=17%  Similarity=0.086  Sum_probs=117.3

Q ss_pred             cCCChHHHHHHHHHHHHhhcCC-CCCcHHHHHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009622           83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (530)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~~~~--~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g  159 (530)
                      .+.+++.+..|+..|+.++.+. .......+..  ..++..+...+.+.. ..+...|+.++..++..-....+..+ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            5688999999999999998874 1122222221  245667777777766 78899999999998884444444333 24


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-CCCh
Q 009622          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF  238 (530)
Q Consensus       160 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~  238 (530)
                      ++|.|+..+.++...+++.|..+|..++...+.....     ....+...+ .+.++.++..++..+..+....+ ....
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            6899999999988999999999999998766511111     133344444 88899999999998888877654 1121


Q ss_pred             h----hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622          239 D----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       239 ~----~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                      .    ....+.+.+..++.+.+++++..+-.++..+....++
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            1    2356888999999999999999998888877544333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.0014  Score=58.36  Aligned_cols=244  Identities=19%  Similarity=0.268  Sum_probs=137.3

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009622           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  164 (530)
                      ....-++.|+..|++++...            .+..+.+...+++ ..++.+.+.+|+....           ..+++.|
T Consensus        17 ~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l   72 (289)
T KOG0567|consen   17 QPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVL   72 (289)
T ss_pred             HHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHH
Confidence            34456777888887776432            1334444444433 4555666666665443           2345666


Q ss_pred             HHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC---------
Q 009622          165 VKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---------  233 (530)
Q Consensus       165 ~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~---------  233 (530)
                      +..|..  ..+-+|..|..+|+.+. + +.         .++.+-+.. +++-..+...+-.++..+-...         
T Consensus        73 ~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~  140 (289)
T KOG0567|consen   73 VEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS  140 (289)
T ss_pred             HHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence            666544  34556666677776664 1 11         222333333 4444444444444443332211         


Q ss_pred             ------CCCChhhhhchHHHHHHh-hcCCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009622          234 ------PQPPFDQVSPALPALAHL-IHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       234 ------~~~~~~~~~~~l~~L~~l-l~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a  305 (530)
                            |.+.  ....-+.-+-.. +..+.+.. +..+...|.|+.  .++.         +..|.+-+..++.-.+..+
T Consensus       141 p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Eea---------I~al~~~l~~~SalfrhEv  207 (289)
T KOG0567|consen  141 PYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEEA---------INALIDGLADDSALFRHEV  207 (289)
T ss_pred             ccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHHH---------HHHHHHhcccchHHHHHHH
Confidence                  1111  111223333333 33333332 344566666542  2333         3345555666777889999


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      ..++|.+-+.           -.++.|.+.|... .++.||.+|+.+|+.++..  +         .++.|.+.+.++++
T Consensus       208 AfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~~D~~~  265 (289)
T KOG0567|consen  208 AFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYLGDEER  265 (289)
T ss_pred             HHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHcCCcHH
Confidence            9999988642           2467777777543 2789999999999999643  2         56778888888888


Q ss_pred             hHHHHHHHHHHHhhc
Q 009622          385 DIKKEAAWAISNATS  399 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~  399 (530)
                      -|++.+..+|.-+-.
T Consensus       266 vv~esc~valdm~ey  280 (289)
T KOG0567|consen  266 VVRESCEVALDMLEY  280 (289)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888888776544

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.00037  Score=66.98  Aligned_cols=176  Identities=17%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc----CCch---hhHHHhhcCchH
Q 009622          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT----GDDM---QTQCVIEYQALP  330 (530)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~----~~~~---~~~~~~~~~~l~  330 (530)
                      -+...|+++++-+.-++........-......+...+.+..-..+..+.|++|||..    +.+.   ....+.. -.+.
T Consensus       406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~  484 (728)
T KOG4535|consen  406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLL  484 (728)
T ss_pred             HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHH
Confidence            356667777666655544443333344556667777777777889999999999974    2222   2222221 1222


Q ss_pred             HHHHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-------hCcHHHHHH-HHhcCchhHHHHHHHHHHHhhcC
Q 009622          331 CLLNLLS--GNYKKSIKKEACWTVSNITAGNREQIQAVIE-------ANIIGPLVA-LLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       331 ~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------~~~i~~L~~-ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      .++..-.  +.....|+.+|..+|+|+..-    .+.+.+       .+-+..++. ..-....+||-+||++++|+..+
T Consensus       485 ~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn  560 (728)
T KOG4535|consen  485 KMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN  560 (728)
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence            2222221  122568999999999998541    221221       111222222 22234679999999999999986


Q ss_pred             CCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHH
Q 009622          401 GTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLE  438 (530)
Q Consensus       401 ~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~  438 (530)
                      ..-.....=+-..+.+.|+.++. ..+-+++..|..+|.
T Consensus       561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS  599 (728)
T ss_pred             ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence            43211000011124556666654 345556666655543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.89  E-value=0.024  Score=59.90  Aligned_cols=387  Identities=15%  Similarity=0.112  Sum_probs=226.0

Q ss_pred             CHHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           74 NLPVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .+-.++..+...+. +.+..++..+.........    ..++....+..-++.++.. +.++..++.-+++++..-..  
T Consensus       198 ~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~----~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~--  270 (759)
T KOG0211|consen  198 HLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD----DAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES--  270 (759)
T ss_pred             HHHHHHHHccchhhhhcchhhhhhhHHhccCCCh----HHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH--
Confidence            33445555555443 2355566666665543211    2333445666666766666 99999999999999984333  


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                       .....+.++.+.++..+....+++.|...+.++...-..-- . ....+.+.+++.. .+.+..+........+.++..
T Consensus       271 -~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d-~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~  346 (759)
T KOG0211|consen  271 -EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-D-VVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSA  346 (759)
T ss_pred             -HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-h-hhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHH
Confidence             56677899999999998888899999998888874221100 1 1222456666666 444444444433333333322


Q ss_pred             CCC-CCh----------------------------------------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622          233 KPQ-PPF----------------------------------------DQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       233 ~~~-~~~----------------------------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      -.. ...                                        .....++|.+-.+..+.+..++...+..+..+.
T Consensus       347 ~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~  426 (759)
T KOG0211|consen  347 VGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLS  426 (759)
T ss_pred             hccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccC
Confidence            100 000                                        000112233333333333333333333322222


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009622          272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (530)
                      .-.+  ....+ ....+.+...++...+.++....+.+..+-...+...........+|.+..+-... ..+++.+..+.
T Consensus       427 p~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~  502 (759)
T KOG0211|consen  427 PILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEY  502 (759)
T ss_pred             ccCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHH
Confidence            1110  00000 13445566666667777787777777666544444444445556777777777766 78888888888


Q ss_pred             HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHH
Q 009622          352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT  431 (530)
Q Consensus       352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~  431 (530)
                      +-.++....   ..+++...-+.+...+.+....+++.|+..+.-++..-..+.    .....++.+..+..+++...+.
T Consensus       503 ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~R~  575 (759)
T KOG0211|consen  503 IPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLVRM  575 (759)
T ss_pred             HHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccchhh
Confidence            888775321   233333344555555666678899999999988876332221    1223566666666666778888


Q ss_pred             HHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009622          432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       432 ~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~  496 (530)
                      ..+.++..+.....+.         -+.+     ..+..+..+..++.++|+-.+.+.+.++-..
T Consensus       576 t~l~si~~la~v~g~e---------i~~~-----~Llp~~~~l~~D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  576 TTLFSIHELAEVLGQE---------ITCE-----DLLPVFLDLVKDPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             HHHHHHHHHHHHhccH---------HHHH-----HHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence            8888888777655321         1233     3367888889999999999998888877554

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.89  E-value=0.015  Score=60.81  Aligned_cols=141  Identities=17%  Similarity=0.139  Sum_probs=108.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      -++.+++.+.+.|.+++...-..+...+...  |.  .++-  .++.+.+=+.+++ +.+|..|++.++.+-.  ++...
T Consensus        56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~--~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~  126 (757)
T COG5096          56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK--PE--LALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG  126 (757)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HH--HHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence            5678888888888888888888888777653  32  1111  3777888888888 9999999999987654  33332


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                           .+++.+.+++.++++.+|..|+.++.++-.-++   +.+.+.|.+..+..++ .+.++.+..+|+.++..+...
T Consensus       127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                 347889999999999999999999999975443   3455666676666666 889999999999999998766

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.88  E-value=0.0001  Score=56.38  Aligned_cols=95  Identities=18%  Similarity=0.331  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009622          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  423 (530)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  423 (530)
                      .|+.+.++|+.++.+-+..+...++ .++++++..+.+.+++||..|+.+|.|++.....+...++  ..+++.|..++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc
Confidence            3677888888888765555555554 5899999999999999999999999999986544444433  357889999999


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q 009622          424 CPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       424 ~~~~~v~~~al~~l~~ll~  442 (530)
                      +.|+.|+.. .+.|.++++
T Consensus        79 D~d~~Vr~~-a~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSA-AELLDRLLK   96 (97)
T ss_pred             CCchhHHHH-HHHHHHHhc
Confidence            999998864 577877775

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.88  E-value=5.6e-05  Score=57.47  Aligned_cols=86  Identities=27%  Similarity=0.481  Sum_probs=69.5

Q ss_pred             HHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622          287 FPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       287 i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                      ++.|++.| +++++.++..++++|+.+..           ..+++.|..++.++ ++.+|..|+++|+.+.         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDE-DPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---------
Confidence            46788888 88899999999999995431           14588999999888 9999999999999883         


Q ss_pred             HHHhCcHHHHHHHHhcC-chhHHHHHHHHHH
Q 009622          366 VIEANIIGPLVALLENA-EFDIKKEAAWAIS  395 (530)
Q Consensus       366 l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~  395 (530)
                        ....++.|.+++.++ +..+|..|..+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              124788999988776 5667999999875

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.88  E-value=4.6e-05  Score=57.92  Aligned_cols=87  Identities=29%  Similarity=0.421  Sum_probs=69.0

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       118 v~~Lv~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      +|.|++.| ++++ +.++..|+++|+.+..  +         .+++.|+.+++++++.++..++++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 5555 9999999999995432  2         34789999999999999999999999882         


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~  227 (530)
                        ....++.|.+++.++.+..++..++++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12378899999966667777888888874

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.0062  Score=60.15  Aligned_cols=308  Identities=13%  Similarity=0.140  Sum_probs=175.4

Q ss_pred             HHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCch
Q 009622          137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL  216 (530)
Q Consensus       137 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~  216 (530)
                      .+++...+...+++.+..+     .|.|-..+++.-.-+.-.++++++.++...-  ....++ ..+..|-.+| +++..
T Consensus       247 lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL-~s~rv  317 (898)
T COG5240         247 LVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFL-KSTRV  317 (898)
T ss_pred             hHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHH-hcchH
Confidence            3445555555555555444     3667777777667777788888888775431  111111 1345555556 78888


Q ss_pred             hHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009622          217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (530)
Q Consensus       217 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  296 (530)
                      ..+-.|+.+|..|+...|...    ..+-+-+-.++.+.+..+...|+.+|..  .+.++.+..++.  .++.++.=+++
T Consensus       318 ~~rFsA~Riln~lam~~P~kv----~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~SD  389 (898)
T COG5240         318 VLRFSAMRILNQLAMKYPQKV----SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMSD  389 (898)
T ss_pred             HHHHHHHHHHHHHHhhCCcee----eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhcc
Confidence            999999999999998765432    2233445566666777777776666544  334444543332  23334443444


Q ss_pred             CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHH
Q 009622          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLV  376 (530)
Q Consensus       297 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~  376 (530)
                      +-.-+...|++.|+...   +....     ..+..|...|......+.++.+..+++.+....|+....     .+..|+
T Consensus       390 ~FKiI~ida~rsLsl~F---p~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC  456 (898)
T COG5240         390 GFKIIAIDALRSLSLLF---PSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLC  456 (898)
T ss_pred             CceEEeHHHHHHHHhhC---cHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHH
Confidence            43445555666665543   22221     234556665654446778888888888887766554332     455677


Q ss_pred             HHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCch
Q 009622          377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVN  456 (530)
Q Consensus       377 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~  456 (530)
                      ..+.+-  +.-+-++..|+-+-..+....-.    ...+..+.+-+--++.-++..|+.+|.++.-..+..         
T Consensus       457 ~fIEDc--ey~~I~vrIL~iLG~EgP~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---------  521 (898)
T COG5240         457 TFIEDC--EYHQITVRILGILGREGPRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---------  521 (898)
T ss_pred             HHHhhc--chhHHHHHHHHHhcccCCCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---------
Confidence            777644  33344555555554433100000    012333333333456667778888887664322211         


Q ss_pred             hhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          457 VFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       457 ~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                           +........+..+.+..+++|+++|.-.++.+-
T Consensus       522 -----~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         522 -----VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             -----ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence                 111223456777888999999999988887653

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.83  E-value=0.0035  Score=61.86  Aligned_cols=289  Identities=13%  Similarity=0.095  Sum_probs=160.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      ..|.|-.++++.- ..+..+++++++.++..+  ....+++ ..+..|-.+|+++....+-.|+++|..|+...|.....
T Consensus       265 ~rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v  340 (898)
T COG5240         265 LRPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV  340 (898)
T ss_pred             HHHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence            4566667777665 789999999999988754  1112221 34677888899999999999999999999877742111


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                           +-+.+-.++ .+.+..+...   ++..|............-..+|.+++=+..+=.-+..++++.|+..-.... 
T Consensus       341 -----cN~evEsLI-sd~Nr~Isty---AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~-  410 (898)
T COG5240         341 -----CNKEVESLI-SDENRTISTY---AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK-  410 (898)
T ss_pred             -----cChhHHHHh-hcccccchHH---HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH-
Confidence                 222333344 4444444443   344444333222222222333333333333334456666666666532211 


Q ss_pred             HHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622          277 KIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       277 ~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                        .     ..+..|... ++.+..+....++.++..+....++..+     .++..|...+.+.   +.-+-+..+|+-+
T Consensus       411 --~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc---ey~~I~vrIL~iL  475 (898)
T COG5240         411 --L-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC---EYHQITVRILGIL  475 (898)
T ss_pred             --H-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc---chhHHHHHHHHHh
Confidence              1     112223332 2345566777777777777766654443     2355666666544   2333445555555


Q ss_pred             hcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009622          356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE  435 (530)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~  435 (530)
                      ....|....   -...+..+..-+--.+.-||..|+.||..++...+...    ....+...|-+++++.|.+++..|.-
T Consensus       476 G~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrAsf  548 (898)
T COG5240         476 GREGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRASF  548 (898)
T ss_pred             cccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHHHH
Confidence            442111000   00122233332323455788888888888877553222    22345567778888888888888877


Q ss_pred             HHHHHH
Q 009622          436 GLENIL  441 (530)
Q Consensus       436 ~l~~ll  441 (530)
                      ++.++=
T Consensus       549 ~l~~~~  554 (898)
T COG5240         549 LLRNMR  554 (898)
T ss_pred             HHHhhh
Confidence            777653

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.027  Score=59.99  Aligned_cols=261  Identities=13%  Similarity=0.088  Sum_probs=157.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhh
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~  194 (530)
                      +++..|...+++.+ ..++-.|+..++.++...+...   .+ .++...+.++.- .+...-..++.+|+.++..+--.-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---ad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---AD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---HH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            56777888888888 7999999999999999666322   21 345566665544 334455688889999986543221


Q ss_pred             hhHhhcCChHHHHHhhcC-------CCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHH-HHhhcCCChhHHHHHHH
Q 009622          195 DLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPAL-AHLIHSNDDEVLTDACW  265 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~-------~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L-~~ll~~~d~~v~~~a~~  265 (530)
                      ..+.  .+++.+++-+..       +....++.+||+++|.+++...... ......+.+.| ...+-+.+-.++..|..
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            2221  256666665532       2356789999999999998763222 22333344432 23344556667777777


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh-hcCCCchhH
Q 009622          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNYKKSI  344 (530)
Q Consensus       266 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v  344 (530)
                      ++-........ ..     .+++ |+...+.-....+.++...++.-....+.....+++     .++.. +.+= +..+
T Consensus       494 AlqE~VGR~~n-~p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i  560 (1133)
T KOG1943|consen  494 ALQENVGRQGN-FP-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI  560 (1133)
T ss_pred             HHHHHhccCCC-CC-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence            77554422110 00     1111 222222222334555555555555555544444433     22222 4444 8899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      |..++|+|.+++...++    .....+++++++.....+...+.-+..+.+.++..
T Consensus       561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~  612 (1133)
T KOG1943|consen  561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA  612 (1133)
T ss_pred             HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence            99999999998765554    33457889999988888888888777777776654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.0069  Score=57.98  Aligned_cols=224  Identities=14%  Similarity=0.122  Sum_probs=162.6

Q ss_pred             hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCC----CCC----cHHHHHHcCCHHHHHHhhcCCC-----CHHHHHHH
Q 009622           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEA  137 (530)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~----~~~----~~~~~~~~g~v~~Lv~ll~~~~-----~~~i~~~a  137 (530)
                      +++.++.++++|.+++.++....+..+..+....    ...    -++.+++.++++.|++-+..-+     ...-.+.+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            4578999999999999999999999998876432    111    2567788999999998876533     11234556


Q ss_pred             HHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc----
Q 009622          138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----  211 (530)
Q Consensus       138 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~----  211 (530)
                      +..+-|++.-.+..+..+++.|.+.-|+.-+..  +...-...|..+|+-+..++...+...-...++..+++-+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            778888888888999999998888887775533  44556777888888888777777777777788888888774    


Q ss_pred             C----CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHhC
Q 009622          212 G----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG  285 (530)
Q Consensus       212 ~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~  285 (530)
                      .    ....++.++..-+|+.+.....+.........+....-+++. ....+..++.+|-++..+++  .....+++..
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            1    225678888888888888776666555556666665555544 45566778888888876665  5556677777


Q ss_pred             cHHHHHHhhC
Q 009622          286 VFPRLAEFLM  295 (530)
Q Consensus       286 ~i~~L~~lL~  295 (530)
                      ++..++.+.-
T Consensus       362 GLrtiF~~FM  371 (536)
T KOG2734|consen  362 GLRTIFPLFM  371 (536)
T ss_pred             hHHHHHHHHh
Confidence            7776666543

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.0035  Score=59.92  Aligned_cols=224  Identities=16%  Similarity=0.085  Sum_probs=157.8

Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---------hHHHHHHHHhCcHHHHHHhhCCCCch------hHH
Q 009622          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAVIEAGVFPRLAEFLMHPSPS------VLI  303 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~---------~~~~~~~~~~~~i~~L~~lL~~~~~~------~~~  303 (530)
                      .....+++.|+.+|.+.+.+|....+..+..+++.+         ...+..+++.++++.|++.+..-+.+      -..
T Consensus       121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~  200 (536)
T KOG2734|consen  121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH  200 (536)
T ss_pred             HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence            344678899999999999999999999998888432         24577888889999999988654433      345


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh--
Q 009622          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE--  380 (530)
Q Consensus       304 ~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--  380 (530)
                      ..+..+-|++...+.....+.+.|.+.+|++-+... .-...+..|.-+++-+...+.+....+-...++..+++-+.  
T Consensus       201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y  280 (536)
T KOG2734|consen  201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY  280 (536)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence            667888899988888888888889999999865433 13456777888888877766666666666777888877552  


Q ss_pred             -cC------chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCC
Q 009622          381 -NA------EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT  453 (530)
Q Consensus       381 -~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~  453 (530)
                       ..      +.+.-.+...+||.+...  +.....++....+....-++.. ....+..++.+|..++...+        
T Consensus       281 k~~dP~~~~E~EmmeNLFdcLCs~lm~--~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~--------  349 (536)
T KOG2734|consen  281 KRHDPATVDEEEMMENLFDCLCSLLMA--PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE--------  349 (536)
T ss_pred             hccCCCCcCHHHHHHHHHHHHHHHhcC--hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC--------
Confidence             11      345667777888888773  4666777766666555444444 44456667777776664433        


Q ss_pred             CchhhHHHhhhhccHHHHHHH
Q 009622          454 DVNVFTQMIDDAEGLEKIESL  474 (530)
Q Consensus       454 ~~~~~~~~~~~~~~~~~l~~l  474 (530)
                       ..+++..|.+.+|+..+-.+
T Consensus       350 -gt~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  350 -GTPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             -chHHHHHHHHHHhHHHHHHH
Confidence             22357777777777777655

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.73  E-value=4e-05  Score=52.25  Aligned_cols=55  Identities=27%  Similarity=0.444  Sum_probs=46.7

Q ss_pred             chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622          299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       299 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                      |.+|..|+++||+++...+..... ....+++.|..+|.++ ++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            468999999999998877766544 4457899999999988 889999999999976

...

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.0047  Score=55.17  Aligned_cols=257  Identities=18%  Similarity=0.217  Sum_probs=160.4

Q ss_pred             HHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          118 VPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       118 v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      +..+.+.|.... ...-+..|+..|.++...           +.+..+.+...+.+..++...+++|+.....       
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-------   66 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-------   66 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence            444555555432 134456677666666652           1255555666555566677778888776422       


Q ss_pred             HhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009622          197 VLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                          ..++.++..+. .+..+-++..|..+|..+..          ...++.+-+..+.+-..|.+.+..++..+-..+.
T Consensus        67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~  132 (289)
T KOG0567|consen   67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI  132 (289)
T ss_pred             ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence                36788888885 34467788899999988873          3456777777766667777777777766642211


Q ss_pred             HHH----HHH--H------HhCcHHHHHHhhCCC-Cch-hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009622          276 DKI----QAV--I------EAGVFPRLAEFLMHP-SPS-VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK  341 (530)
Q Consensus       276 ~~~----~~~--~------~~~~i~~L~~lL~~~-~~~-~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  341 (530)
                      ...    ...  +      ..+-+..+-..|.+. .+. -+..|...|.|+..  +         ..+..|..-+..+ +
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S  200 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S  200 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence            000    000  0      001122233333222 221 24456666666542  1         2345666677777 8


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009622          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC  419 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  419 (530)
                      .-.|.+++++++.+-+.           -.+|.|.+.|.+.  ++-||.+|+.||+.++..            .+++.|.
T Consensus       201 alfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------~~~~vL~  257 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------DCVEVLK  257 (289)
T ss_pred             HHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------HHHHHHH
Confidence            89999999999998543           1567777777554  689999999999999773            2577888


Q ss_pred             hccCCCChHHHHHHHHHHHHHH
Q 009622          420 DLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       420 ~lL~~~~~~v~~~al~~l~~ll  441 (530)
                      .++.++++-+...|.-+|..+.
T Consensus       258 e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  258 EYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHH
Confidence            8898888888887777766443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.69  E-value=0.0072  Score=62.93  Aligned_cols=237  Identities=16%  Similarity=0.093  Sum_probs=154.0

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCC
Q 009622          124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (530)
Q Consensus       124 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~  202 (530)
                      .+.....|.+-..|.|++...+.........+ . -++...+..+. +..+-++-.|+.+++..|+... +. . ...++
T Consensus       457 ~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~-~-~~p~i  531 (1005)
T KOG2274|consen  457 GLVYQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LL-S-LQPMI  531 (1005)
T ss_pred             hcccccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-cc-c-cchHH
Confidence            33333447777788898887776422222111 1 12333344443 3445677778888777763222 11 1 12345


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHH
Q 009622          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQA  280 (530)
Q Consensus       203 i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~  280 (530)
                      +..|+.+. .....++....+.+|+..|..+|.........+.|.+..++.  ++|+.+...+--++-.++.... +.. 
T Consensus       532 ld~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g-  608 (1005)
T KOG2274|consen  532 LDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG-  608 (1005)
T ss_pred             HHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-
Confidence            66677776 566788899999999999999888888888888887666553  5678777776666666654221 111 


Q ss_pred             HHHhCcHHHHHHhhCCCC----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622          281 VIEAGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       281 ~~~~~~i~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                      -.....+|.+++.|..+.    ......++..|..+..+.+......+-.-++|.+.++.-++.+..+...+.-+|..+.
T Consensus       609 ~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I  688 (1005)
T KOG2274|consen  609 PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI  688 (1005)
T ss_pred             chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence            122367899999998876    4566677788887877766544444555677888877766657888888999999988


Q ss_pred             cCCHHHHHHHHH
Q 009622          357 AGNREQIQAVIE  368 (530)
Q Consensus       357 ~~~~~~~~~l~~  368 (530)
                      ..+.++....-.
T Consensus       689 s~~~eq~~t~~~  700 (1005)
T KOG2274|consen  689 SVTLEQLLTWHD  700 (1005)
T ss_pred             hcCHHHHHhhcc
Confidence            876666655443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.60  E-value=0.14  Score=53.97  Aligned_cols=169  Identities=17%  Similarity=0.179  Sum_probs=125.2

Q ss_pred             hcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009622           82 VWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (530)
Q Consensus        82 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  161 (530)
                      +.+.+...+..|++.+......+ .+ .     +.+.|-+++.+.+.+ .+++.-.-.-|.+++...++..-.     ++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av   94 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV   94 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence            56677777888886655444332 22 2     224677788777666 999999999999999977744332     36


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009622          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (530)
Q Consensus       162 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  241 (530)
                      +.+.+=++++++.+|..|+++++.+= . +    .+ -..+++++.+++ +++++.+++.|+.|+..+-+-++.  ....
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~-~-~----el-~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~~  164 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLR-V-K----EL-LGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYHE  164 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcC-h-H----HH-HHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhhc
Confidence            78888899999999999999999871 1 1    11 222678888888 889999999999999999876432  2223


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009622          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (530)
                      .|.+..+..++...|+.+..+|+.++..+-..
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            45667777788899999999999999887543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.014  Score=62.06  Aligned_cols=257  Identities=14%  Similarity=0.130  Sum_probs=156.7

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh
Q 009622          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (530)
Q Consensus       159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~  238 (530)
                      +++..|+..+++.+..++=.|+..++.++...|.   . +...++...+.++....+...-..+|-+|..|+... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---E-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---H-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            5677888888889999999999999999987762   1 222366677776644445667779999999999874 2223


Q ss_pred             hhhhchHHHHHHhhcC--------CChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622          239 DQVSPALPALAHLIHS--------NDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~--------~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L  309 (530)
                      .....++|.+.+.+.-        ....|+..||..++.++.... .....+++.=.-..|...+-+.+-.+|..|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            3456778887776652        245677777777766664432 2223233222222334445667778898888887


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcCchhH
Q 009622          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LENAEFDI  386 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v  386 (530)
                      -.......          -.|.=++++.+..  .-..|.++...++--.+..+..+..+++     .|+.- +.+-|..+
T Consensus       496 qE~VGR~~----------n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~i  560 (1133)
T KOG1943|consen  496 QENVGRQG----------NFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKI  560 (1133)
T ss_pred             HHHhccCC----------CCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHH
Confidence            65543211          1111112222220  2233444444555544455544444443     22222 45568999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHH
Q 009622          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI  440 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~l  440 (530)
                      |..++++|.+++.. .+++    ...+.+++|++...+.+...+..+.-+...+
T Consensus       561 relaa~aL~~Ls~~-~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev  609 (1133)
T KOG1943|consen  561 RELAAYALHKLSLT-EPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEV  609 (1133)
T ss_pred             HHHHHHHHHHHHHh-hHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence            99999999998774 2332    4457788888888888877665554444444

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.56  E-value=0.069  Score=53.61  Aligned_cols=299  Identities=15%  Similarity=0.126  Sum_probs=172.4

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCC----cHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHhcCChhh-HHH
Q 009622           86 DSGVQYECTTQFRKLLSIERSP----PIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASGTSEH-TKV  154 (530)
Q Consensus        86 ~~~~~~~a~~~l~~l~s~~~~~----~~~~~~~~g~v~~Lv~ll~~~~------~~~i~~~a~~~L~~l~~~~~~~-~~~  154 (530)
                      +.+.....+..+.+++......    ......+..++|.+.++.....      ++.+-..+..++..+...-+.. .+.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5566677777777776653222    2344445568888887764321      1355555666666665533322 222


Q ss_pred             HHhCCChHHHHHhhC----------CCC--HHHHHHHHHHHHh-hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHH
Q 009622          155 VIDHGAVPIFVKLLY----------SPS--DDVREQAVWALGN-IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN  221 (530)
Q Consensus       155 ~~~~g~i~~L~~lL~----------~~~--~~~~~~a~~~L~n-l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~  221 (530)
                      +     +..+..+.-          ..+  .......+..+.. +++-.+.+.-. .....+..++.+.....++..+..
T Consensus       136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~  209 (415)
T PF12460_consen  136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLA  209 (415)
T ss_pred             H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHH
Confidence            2     222333222          011  1112222222222 22222222111 111256677777766667888888


Q ss_pred             HHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCC----ChhHHHHHHHHHHHhc-cCChHHHHHHHHhCcHHHHHHhhC
Q 009622          222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSN----DDEVLTDACWALSYLS-DGTNDKIQAVIEAGVFPRLAEFLM  295 (530)
Q Consensus       222 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~----d~~v~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~lL~  295 (530)
                      ++.+++.+...-+...  ....++..+...+ ...    .....+-..|...-+. ++++.. .     .++..|+.++.
T Consensus       210 ~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-----~~~~~L~~lL~  281 (415)
T PF12460_consen  210 ALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T-----ELLDKLLELLS  281 (415)
T ss_pred             HHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-----HHHHHHHHHhC
Confidence            8888888877632222  3344555444444 222    2334444556655444 333322 2     35677888887


Q ss_pred             CCCchhHHHHHHHHhHhhcCCch--------hhHHHhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009622          296 HPSPSVLIPALRTVGNIVTGDDM--------QTQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (530)
Q Consensus       296 ~~~~~~~~~a~~~L~nl~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (530)
                      +  +.+...+.+.++-+....+.        ..+.+.+.    .++|.|+...... +...+.....+|+.+..+-|..+
T Consensus       282 ~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~v  358 (415)
T PF12460_consen  282 S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSV  358 (415)
T ss_pred             C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHH
Confidence            7  55788888888888765232        22223333    3566676766666 55688888899999998777654


Q ss_pred             HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009622          364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      -.---..++|.|++.|+.++.+++..++.+|..+....
T Consensus       359 l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  359 LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            33323468999999999999999999999999999865

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.52  E-value=0.018  Score=60.05  Aligned_cols=312  Identities=12%  Similarity=0.060  Sum_probs=182.6

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009622           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  163 (530)
                      +..|.....|.+.+.+..+..  .....+. .-++...+..+..+..+-++..|+++++..+.  ...... ...+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence            566777778888888776552  1111111 11344555666555546788888888888774  221111 12466778


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009622          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (530)
Q Consensus       164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  242 (530)
                      |+++....+.++.-..+.+|+..+..+|++... .+..+.|.++.+.. .+.|+.+...+--++-.++... .....+..
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence            888888788889889999999999888865444 34445565555543 5567777777767777666632 11223446


Q ss_pred             chHHHHHHhhcCCC----hhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCC
Q 009622          243 PALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       243 ~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~  316 (530)
                      ..+|.++..+..++    .....-++..|..+.++.+ ...+.++. -++|.+.++. .+++......+-.||..+....
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            78999999998765    4555556666665655433 22233333 4556666664 4567788888889998888765


Q ss_pred             chhhHHHhhc-C-----chHHHHHhhcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHhCcHHH-HHHHHhcCchh
Q 009622          317 DMQTQCVIEY-Q-----ALPCLLNLLSGNYKKSIKKEACWTVSNITA----GNREQIQAVIEANIIGP-LVALLENAEFD  385 (530)
Q Consensus       317 ~~~~~~~~~~-~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~-L~~ll~~~~~~  385 (530)
                      .++...--.. |     ++..+..+|+    ++.-..++..+|.+..    +-+......++. ++.. +.++.+.....
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls  766 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS  766 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence            5443222222 2     2333344443    3333444444444433    222222222221 2333 33344445678


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHH
Q 009622          386 IKKEAAWAISNATSGGTHEQIKFL  409 (530)
Q Consensus       386 v~~~a~~aL~nl~~~~~~~~~~~l  409 (530)
                      +-+..+.++++++..........|
T Consensus       767 viQsLi~VfahL~~t~~~~~l~FL  790 (1005)
T KOG2274|consen  767 VIQSLIMVFAHLVHTDLDQLLNFL  790 (1005)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHH
Confidence            888889999999886433333333

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.0095  Score=61.13  Aligned_cols=261  Identities=15%  Similarity=0.168  Sum_probs=144.1

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh-
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD-  195 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~-  195 (530)
                      ..+.+-.++.+.. ..+..+|++++.++...++....     ..+..|--+++++...+|-.|.++|..+|.-.|..-. 
T Consensus       246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence            3444555666666 78999999999998875544332     2677788888889999999999999999976553211 


Q ss_pred             -------hHhhcC---ChHHHHHhhcCCC---chhHHHHHHHHhhhhccCCCCCChh-----------hhhchHHHHHHh
Q 009622          196 -------LVLSQG---GLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFD-----------QVSPALPALAHL  251 (530)
Q Consensus       196 -------~i~~~~---~i~~Ll~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~-----------~~~~~l~~L~~l  251 (530)
                             .+-+.+   ....+..+|+...   -..+......+.++++.+.......           .....++.|..+
T Consensus       320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~  399 (865)
T KOG1078|consen  320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM  399 (865)
T ss_pred             cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence                   110000   1112222232111   1223333444444444432111100           112333444444


Q ss_pred             hcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009622          252 IHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (530)
Q Consensus       252 l~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~  330 (530)
                      |..+ .-+....+..++..+....++...     .++..|..++.+..  ...-+.++|.-+....+..   ......+.
T Consensus       400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir  469 (865)
T KOG1078|consen  400 LREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIR  469 (865)
T ss_pred             HHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhH
Confidence            4432 233444455555544443222211     23445555554433  3334444444444332211   11223455


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       331 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .+.....-. +..+|..|..+|.++..+++...     ..+.-.|.+++.+.|.++|..|..+|.++..
T Consensus       470 ~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  470 FIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             HHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence            555555555 78899999999999986543321     2355677788888999999999999999874

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.46  E-value=0.0015  Score=62.95  Aligned_cols=321  Identities=16%  Similarity=0.132  Sum_probs=164.4

Q ss_pred             CHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC----
Q 009622           74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG----  147 (530)
Q Consensus        74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~----  147 (530)
                      ........+.+  ....++.++++.|.-++...   ....+....+...+...+.... |.++..++.++..+..+    
T Consensus       254 ~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~  329 (728)
T KOG4535|consen  254 SGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQ  329 (728)
T ss_pred             chhhHHhhhcCccCCchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhh
Confidence            44455555554  23457778887777665431   1111111222333444455566 89999999888776542    


Q ss_pred             -ChhhHHHHHhCCChHHHH------H-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHH
Q 009622          148 -TSEHTKVVIDHGAVPIFV------K-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML  219 (530)
Q Consensus       148 -~~~~~~~~~~~g~i~~L~------~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~  219 (530)
                       .++..+.-...|-+-.+.      . .-.+..+..+...+.++.+|.......-.. -.....+.++.-..++.+.-+.
T Consensus       330 ~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn-~~~T~~~~Fl~GC~d~~~~lv~  408 (728)
T KOG4535|consen  330 YKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPN-DRQTLCITFLLGCNDSKNRLVK  408 (728)
T ss_pred             cCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCC-cchhhhHHHHhcccchHHHHHH
Confidence             222222211112111110      0 112233445566666676665322110000 0000122222222234455566


Q ss_pred             HHHHHHhhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----Ch---HHHHHHHHhCcHHHHH
Q 009622          220 RNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TN---DKIQAVIEAGVFPRLA  291 (530)
Q Consensus       220 ~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~----~~---~~~~~~~~~~~i~~L~  291 (530)
                      ..|..++..+.-+... ........+...+...+.+..-..++.+.|+++++++.    .+   .....+.. -.+..+.
T Consensus       409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~  487 (728)
T KOG4535|consen  409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKML  487 (728)
T ss_pred             HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHH
Confidence            6677777776666522 23344556666666666666667889999999999743    11   11111111 1122222


Q ss_pred             Hhh---CCCCchhHHHHHHHHhHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622          292 EFL---MHPSPSVLIPALRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       292 ~lL---~~~~~~~~~~a~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                      ..-   ...+.+++..+.++|+|+...-+..   ....+..+.+..+....-.+....||.+||.+++|+..+..-..+.
T Consensus       488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~  567 (728)
T KOG4535|consen  488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQT  567 (728)
T ss_pred             HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccC
Confidence            221   1246789999999999997422100   0011111222222222222226789999999999998753110111


Q ss_pred             H-HHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcC
Q 009622          366 V-IEANIIGPLVALLEN-AEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       366 l-~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~  400 (530)
                      . ....+++.|+.++.+ .+++||..|+.+|.--...
T Consensus       568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence            1 112357788887755 4899999999998876553

>PRK14707 hypothetical protein; Provisional

Probab=97.46  E-value=0.22  Score=57.15  Aligned_cols=353  Identities=18%  Similarity=0.109  Sum_probs=202.1

Q ss_pred             HHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          118 VPRFVEFLL-REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~-~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +-.+++-++ .+++...+..+......++. ....+..+ +...|..++..++. ++..-.++++..|.....+....+.
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~  242 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN  242 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence            334444433 34446677766666666666 34444444 44557777777766 4433444455555444333344555


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhh-hhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~-~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .+-.. .+...++.|.+-++......+..++. .+..+........-..+-..|..+-+-.|..+...+...|..=...+
T Consensus       243 ~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d  321 (2710)
T PRK14707        243 ELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADD  321 (2710)
T ss_pred             hCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhcc
Confidence            54333 45566666656666655555555444 45544322222222333444555555677777777666664433334


Q ss_pred             hHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622          275 NDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       275 ~~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      .+..+.+ +.-.+...+..| +.++..+...|...|..-....+...+.+-..|+-..|-.+-+-+ +..+...|+..|.
T Consensus       322 ~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA  399 (2710)
T PRK14707        322 PELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWP-DTPVCAAAASALA  399 (2710)
T ss_pred             Hhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCC-CchHHHHHHHHHH
Confidence            4333322 222333344444 345555555555555444444555544333334444444444555 6666677776666


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHH
Q 009622          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  433 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~a  433 (530)
                      .=..++++....+-..|+-..|-.+-+-++..+...++.+|.--..+ +.+.++.|--.++...|..+-+.+|..+...+
T Consensus       400 ~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a  478 (2710)
T PRK14707        400 EHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQT  478 (2710)
T ss_pred             HHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence            65567777776666677777777777888888999998888877765 56777777666777777777789998877766


Q ss_pred             HHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009622          434 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  487 (530)
Q Consensus       434 l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~  487 (530)
                      .+.|.-=+.....           .+.-|.-.+....|..|...++......|.
T Consensus       479 a~~La~~l~~~~~-----------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~  521 (2710)
T PRK14707        479 ASALAARLAHERR-----------LRKALKPQEVVIALHSLSKWPDTPICAEAA  521 (2710)
T ss_pred             HHHHHHHhcccHH-----------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            6666555544332           345555566677777777777766554443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.45  E-value=0.0008  Score=51.49  Aligned_cols=68  Identities=16%  Similarity=0.341  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHhhhCCCchhhhhHhhc
Q 009622          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (530)
Q Consensus       133 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~  200 (530)
                      ++...+++|+|++..++...+.+.+.|++|.++....  ..+|-+++.|+|++.|++.++++.+..+...
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567889999999999999999999999999999764  4789999999999999999999888776543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.44  E-value=0.056  Score=58.32  Aligned_cols=143  Identities=14%  Similarity=0.192  Sum_probs=109.9

Q ss_pred             cHHHHHHhhCC----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009622          286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       286 ~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      +.|.+++..+.    +++.++..|.-+|+.++.-+.+..     ..-+|.|+.++...+++.+|.++..+++.++...|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            34555555533    468899999999999987655444     245789999998555999999999999999876655


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622          362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll  441 (530)
                      .+..     .-+.|.+.+.+.++.||+.|..+|.+|...+      .+--.|.+..+..+|.++++.+...|=..+..|.
T Consensus       995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            4433     4568889999999999999999999999853      2335699999999999999999887776555555


Q ss_pred             hhh
Q 009622          442 KVG  444 (530)
Q Consensus       442 ~~~  444 (530)
                      ..+
T Consensus      1064 ~k~ 1066 (1251)
T KOG0414|consen 1064 SKG 1066 (1251)
T ss_pred             hcc
Confidence            443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.42  E-value=0.03  Score=56.40  Aligned_cols=230  Identities=16%  Similarity=0.116  Sum_probs=143.1

Q ss_pred             cCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009622           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      .+.++.+..+|+++|.|++-.. ....+.+.+.|..+.+++.|+...    +.++.+-..++|.-++...++.+..+++.
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            3567889999999999999874 334456668999999999998761    37899999999999998888888888764


Q ss_pred             -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--------C
Q 009622          159 -GAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------G  212 (530)
Q Consensus       159 -g~i~~L~~lL~~-----------------~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------~  212 (530)
                       +++..+...|..                 .+......++.++-|+..+.+.... -...+.++.++.++.        .
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence             677777666521                 1334566788899999866654322 012223444444432        2


Q ss_pred             CCchhHHHHHHHHhhhhccCCC------------CCChhhhhchHHHHHHhhc----CC----ChhHHHHHHHHHHHhcc
Q 009622          213 QPKLSMLRNATWTLSNFCRGKP------------QPPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLSD  272 (530)
Q Consensus       213 ~~~~~~~~~a~~~L~~L~~~~~------------~~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~l~~l~~  272 (530)
                      .+.......++.+|.|+-....            ..........+..|+.+|.    ..    -.+.....+.+|..++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence            2345567777788877721110            0001112334444555543    22    13567778888888887


Q ss_pred             CChHHHHHHHHh----------------CcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622          273 GTNDKIQAVIEA----------------GVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       273 ~~~~~~~~~~~~----------------~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~  314 (530)
                      ......+.+...                .+-.+|++++.+..+.++..+...+-.+|.
T Consensus       280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            765443433221                334556666666555566666555555553

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.38  E-value=0.00052  Score=43.30  Aligned_cols=39  Identities=38%  Similarity=0.758  Sum_probs=35.5

Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009622          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (530)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~  187 (530)
                      ++.+..+++.|+++.|+.++.++++.++..++|+|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346778889999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0054  Score=60.50  Aligned_cols=154  Identities=17%  Similarity=0.206  Sum_probs=108.1

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCCchhhHHH
Q 009622          247 ALAHLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  323 (530)
                      .+..++.+.|+-++.....+++-  .....         .+++..++.. +++.+..+++.|+.+||-+|..+.      
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence            45566777777777766555432  22221         2667778877 777899999999999999887544      


Q ss_pred             hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009622          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  403 (530)
Q Consensus       324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~  403 (530)
                         ..++..+++|..++++.||...+.+|+-.|+++..+.       .+..|-.++.+...-||+.|+.+++-+...+++
T Consensus       585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence               3466777888777799999999999999998654432       345566677777889999999999999887765


Q ss_pred             HHHHHHHHcCChHHHHhccCCCCh
Q 009622          404 EQIKFLVIQGCIKPLCDLLVCPDP  427 (530)
Q Consensus       404 ~~~~~l~~~~~l~~L~~lL~~~~~  427 (530)
                      +.-..+  .++.+.+.+++..++.
T Consensus       655 ~Lnp~v--~~I~k~f~~vI~~Khe  676 (926)
T COG5116         655 ELNPNV--KRIIKKFNRVIVDKHE  676 (926)
T ss_pred             ccChhH--HHHHHHHHHHHhhhhH
Confidence            433222  2455566666554443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.36  E-value=0.0017  Score=49.81  Aligned_cols=93  Identities=15%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009622          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (530)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  381 (530)
                      |..++.+|+.++.+-+......+ ..+++.++..+.++ +.+||..||.+|.|++......+-..+ ..+++.|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            45667777777665554433333 36889999999999 999999999999999874333332222 3588999999999


Q ss_pred             CchhHHHHHHHHHHHhh
Q 009622          382 AEFDIKKEAAWAISNAT  398 (530)
Q Consensus       382 ~~~~v~~~a~~aL~nl~  398 (530)
                      .++.||..| ..|-++.
T Consensus        80 ~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CchhHHHHH-HHHHHHh
Confidence            999998876 5555543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.35  E-value=0.0093  Score=61.53  Aligned_cols=222  Identities=15%  Similarity=0.138  Sum_probs=150.3

Q ss_pred             hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHh
Q 009622          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYL  270 (530)
Q Consensus       192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l  270 (530)
                      ..+...+..|+...|+.+. ....+........+|..    .-.........+++.+...+.... ..-....+.++.|+
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL  569 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNL  569 (748)
T ss_pred             HhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence            3456677889999999998 45555666666667661    111111122344555555444332 22345678889999


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc-CchHHHHHhhcCCCchhHHHHHH
Q 009622          271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEAC  349 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~  349 (530)
                      +..++...+.+++...++.+-.++..+++..+..++..+.||..+..-....+.+. .-++.....+... +.....+++
T Consensus       570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a  648 (748)
T KOG4151|consen  570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA  648 (748)
T ss_pred             cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence            88777666778888888888888888999999999999999998777666666663 4455555555555 777777888


Q ss_pred             HHHHHHhcCCHHHHH-HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 009622          350 WTVSNITAGNREQIQ-AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD  420 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  420 (530)
                      .++..|+.-...++. ..--......+..++.++++.++...+..+.|+.. +..+....+.....+..+..
T Consensus       649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~  719 (748)
T KOG4151|consen  649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSG  719 (748)
T ss_pred             ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHH
Confidence            877777765555554 23334577888889999999999999999999544 34555555555555544443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.09  Score=56.89  Aligned_cols=232  Identities=11%  Similarity=0.051  Sum_probs=143.3

Q ss_pred             HHHHhhcCCCchhHHHHHHHHhhhhccCCCCC--ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009622          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP--PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (530)
Q Consensus       205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  282 (530)
                      .+.....++.+..++..+...|..++..++..  .......+...|.+-+++.....+...+.++..+.+..+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            33444435558889999999999999884222  2233456667777777888888888888888888765542223334


Q ss_pred             HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC------chHHHHHhhc----CCCchhHHHHHHHHH
Q 009622          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ------ALPCLLNLLS----GNYKKSIKKEACWTV  352 (530)
Q Consensus       283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~------~l~~L~~lL~----~~~~~~v~~~a~~~L  352 (530)
                      ..-+.+.++.+ +..+...+..+..+|-.|+.     .+...+.|      .+..++..+.    .+ ...+......++
T Consensus       737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai  809 (1176)
T KOG1248|consen  737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAI  809 (1176)
T ss_pred             HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHH
Confidence            33344444444 77788888888877777762     11111111      3344444443    33 333333323444


Q ss_pred             HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHH
Q 009622          353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV  432 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~  432 (530)
                      ..+..........-.-.+++..+.-+|.+..+++++.|+.++.-++..-+...... ....+++.+..+++.....++..
T Consensus       810 ~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~K  888 (1176)
T KOG1248|consen  810 THILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRKK  888 (1176)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHHH
Confidence            44443222222112223456677777888899999999999999998755443333 22346778888888778888888


Q ss_pred             HHHHHHHHHhhh
Q 009622          433 CLEGLENILKVG  444 (530)
Q Consensus       433 al~~l~~ll~~~  444 (530)
                      +-..|..++...
T Consensus       889 vr~LlekLirkf  900 (1176)
T KOG1248|consen  889 VRLLLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHHHHh
Confidence            888888887654

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.34  E-value=0.0006  Score=43.01  Aligned_cols=39  Identities=49%  Similarity=0.669  Sum_probs=35.1

Q ss_pred             HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      +....+++.|+++.|++++.+++++++..++|+|.|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            466778899999999999998899999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.33  E-value=0.01  Score=51.74  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC-ChHHHHHh
Q 009622          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQ  209 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~-~i~~Ll~l  209 (530)
                      |.+|..++.+++.++...+...+     ..++.+...|.++++.+|.+|+.+|..|...+.     +.-.| .+..++.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence            78999999999999986555444     347899999999999999999999999975432     22223 33777888


Q ss_pred             hcCCCchhHHHHHHHHhhhhccCC
Q 009622          210 LNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      + .+++++++..|..++..+....
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc
Confidence            8 8889999999999999998873

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.093  Score=55.68  Aligned_cols=347  Identities=14%  Similarity=0.105  Sum_probs=178.3

Q ss_pred             hHHHHHHHHHHHHhhcCC-CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009622           87 SGVQYECTTQFRKLLSIE-RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV  165 (530)
Q Consensus        87 ~~~~~~a~~~l~~l~s~~-~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  165 (530)
                      +....-|++.+..+++.- ...+.+...+.=+++.+...++++- -.+|..|+|.++.++..+-.....+  ..++....
T Consensus       432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~  508 (1010)
T KOG1991|consen  432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNL--SEALELTH  508 (1010)
T ss_pred             hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHH
Confidence            344444555555554321 1233333334445666666777776 7899999999999995332111111  23456666


Q ss_pred             HhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcCCCchhHHHHHHH-HhhhhccCCCCCChhhh
Q 009622          166 KLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPFDQV  241 (530)
Q Consensus       166 ~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~~~~~~~~~~a~~-~L~~L~~~~~~~~~~~~  241 (530)
                      ..|. +.+-.++-.|+.+|..+..+.+.....+..  .+.++.|+++. +..+.+....++. .++.++..-..-.....
T Consensus       509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            6666 566778888999999888776543222211  12444555555 3333333333333 33334433333334445


Q ss_pred             hchHHHHHHhhcC---CC---hhHHHHHHHHHHHhc------cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622          242 SPALPALAHLIHS---ND---DEVLTDACWALSYLS------DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       242 ~~~l~~L~~ll~~---~d---~~v~~~a~~~l~~l~------~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L  309 (530)
                      ..+.....+++.+   .+   .+-...|..+|..+.      ...++... -+..-+++.+-.+|.+.-..+...++.++
T Consensus       588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~  666 (1010)
T KOG1991|consen  588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIV  666 (1010)
T ss_pred             HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            6666677777764   11   222222333333222      12222222 12224455555666666677788888888


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-hCcHHHHHHHHhcC--chh
Q 009622          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIE-ANIIGPLVALLENA--EFD  385 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~~L~~ll~~~--~~~  385 (530)
                      ..+....++....+  -|+++.+.+.+... ....-....-+|.|+.. +.+.....-.- .-++..+..++.+.  ...
T Consensus       667 ~~~t~~~~~Isp~m--W~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~  743 (1010)
T KOG1991|consen  667 SSLTFLSKEISPIM--WGLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDS  743 (1010)
T ss_pred             hhhhhhhcccCHHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchH
Confidence            77776554443222  36788888888877 66777788888998776 44321111100 11222333344442  223


Q ss_pred             HHHHHHHHHHHhhcCCC--HHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhh
Q 009622          386 IKKEAAWAISNATSGGT--HEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       386 v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~  445 (530)
                      =...|+..+.-++..+.  .+++..+    .+...++-+.  .++...+..+++.+.+-+-+.+
T Consensus       744 d~~~a~kLle~iiL~~kg~~dq~ipl----f~~~a~~~l~~~~e~s~~~~~~leVvinalyynP  803 (1010)
T KOG1991|consen  744 DCESACKLLEVIILNCKGLLDQYIPL----FLELALSRLTREVETSELRVMLLEVVINALYYNP  803 (1010)
T ss_pred             HHHHHHHHHHHHHHHhcCcHhhHhHH----HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCc
Confidence            33445555555544221  2221111    1222222222  2455566667776666554443

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.32  E-value=0.0024  Score=66.42  Aligned_cols=190  Identities=17%  Similarity=0.124  Sum_probs=133.6

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh--------Hhh----cCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL--------VLS----QGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~--------i~~----~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      ...|+.+|+.  +++-..+..++.-+..|++.++..        +.+    ..++|.++..+ ...+...+.+...+|++
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence            3456666654  456666777777777666543221        111    24678888887 35566777788888888


Q ss_pred             hccCCCCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---chhHHH
Q 009622          229 FCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIP  304 (530)
Q Consensus       229 L~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~~~~~  304 (530)
                      +..+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ -+++.++.+-.+.+   ..+|..
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence            877655432 2345778899999999999999999999988777555443333333 46777777766554   568999


Q ss_pred             HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       305 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                      |+.+|+.+.+..|...-......++..|.+.|.+. ..-||++|..+=.+.
T Consensus       973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence            99999999986665554555667899999999988 888999998775544

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.31  E-value=0.047  Score=55.39  Aligned_cols=295  Identities=13%  Similarity=0.094  Sum_probs=147.2

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh
Q 009622          120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (530)
Q Consensus       120 ~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~  199 (530)
                      .++...+ ++ +..+..|+..+.......|+....     ++..++.++.+.+..||.+|+..|..+|.+.+.....   
T Consensus        27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k---   96 (556)
T PF05918_consen   27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK---   96 (556)
T ss_dssp             HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred             HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence            3445444 34 788999999999999877877665     4678999999999999999999999999988765444   


Q ss_pred             cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc---CCChhHHHHHHHHHHH-hccCCh
Q 009622          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSY-LSDGTN  275 (530)
Q Consensus       200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~l~~-l~~~~~  275 (530)
                        +...|+++| ...++.-...+-++|..|...++       .+.+..+...+.   +.|+.+++.++..|.. +..-..
T Consensus        97 --vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~  166 (556)
T PF05918_consen   97 --VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP  166 (556)
T ss_dssp             --HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred             --HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence              466788888 66666666667777777665543       344555555444   5678889988876643 221111


Q ss_pred             HHHH--HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----CchhhHHHhhcCchHHHHHhh------cCCCchh
Q 009622          276 DKIQ--AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQCVIEYQALPCLLNLL------SGNYKKS  343 (530)
Q Consensus       276 ~~~~--~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~~  343 (530)
                      +...  .-.+.-++..+.++|.+-...-......+|..+-..    .....+.+     ++.+....      ... +++
T Consensus       167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e  240 (556)
T PF05918_consen  167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPE  240 (556)
T ss_dssp             TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHH
T ss_pred             HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHH
Confidence            1111  112223445556666553333333444455544431    12222222     23333222      112 333


Q ss_pred             HHHHHHHHHHH----Hhc--CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH
Q 009622          344 IKKEACWTVSN----ITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP  417 (530)
Q Consensus       344 v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~  417 (530)
                      .......++..    +..  .+.....++.+ .++|.+-.+    +...+...+.++..++..+.......++ .-++..
T Consensus       241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~  314 (556)
T PF05918_consen  241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQL  314 (556)
T ss_dssp             HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHH
Confidence            33222222222    122  23333333333 466655554    4577888889999888766433233322 122333


Q ss_pred             HHhccC--CCChH----HHHHHHHHHHHHHhhhhh
Q 009622          418 LCDLLV--CPDPR----IVTVCLEGLENILKVGEA  446 (530)
Q Consensus       418 L~~lL~--~~~~~----v~~~al~~l~~ll~~~~~  446 (530)
                      |..++-  ...++    .++..+.++..|....+.
T Consensus       315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            333332  22333    556666666666655443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.045  Score=59.08  Aligned_cols=243  Identities=13%  Similarity=0.102  Sum_probs=149.7

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhH
Q 009622          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLV  197 (530)
Q Consensus       121 Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i  197 (530)
                      +.....+.++..+|..+..+|..++.. +.......+  ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            344444443489999999999999985 222211111  1233455555566666677777777777765444 222332


Q ss_pred             hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc--CC----CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR--GK----PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~--~~----~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      ..  .++.++-.+ +..+...++++..+|..++.  ..    ..+....+...++.+...+-.+...+....+.++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  344444444 67788899999998888882  11    12223445555665555543333333333355555554


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009622          272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (530)
                      .........-.-.++++.+..+|.+++..++..|+..+..++..-+...-......+++.+..+++.. ...+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            33222222222336778888889999999999999999999987775543333445788888888877 78888888888


Q ss_pred             HHHHhc-CCHHHHHHHHH
Q 009622          352 VSNITA-GNREQIQAVIE  368 (530)
Q Consensus       352 L~nl~~-~~~~~~~~l~~  368 (530)
                      +-.++. ...+.+..++.
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888876 33444444444

>PRK14707 hypothetical protein; Provisional

Probab=97.28  E-value=0.46  Score=54.78  Aligned_cols=401  Identities=16%  Similarity=0.107  Sum_probs=217.9

Q ss_pred             CHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      .+..+++.+..  ++.+-+. ++..|...++.+ ....+.+-..|+...|-.+-+-++++..+..+...-..++. .+..
T Consensus       164 ~~~lllNafSKw~~~~~c~~-aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l  240 (2710)
T PRK14707        164 NISLALNAFSKWSDNPDCQA-VAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL  240 (2710)
T ss_pred             cHHHHHHHhhcCCCCchHHH-HHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence            34556665553  4444444 444444444442 23334443445444444455556656666655554445554 4444


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh-h
Q 009622          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWAL-GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS-N  228 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L-~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~-~  228 (530)
                      +..+ +...+...+..|+. ++.....+++..| ..++ +.+..++.+-.. .+.-.++-|.+-++..+...+...|. .
T Consensus       241 ~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~r  317 (2710)
T PRK14707        241 RNEL-KPQELGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAER  317 (2710)
T ss_pred             HHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence            4443 33445566666665 5554555555544 4554 444455554333 34445555556677776666655554 4


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009622          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~  308 (530)
                      |..+..........++-..|..+-+-+|..+...+..+|..=...+++..+.+-..|+-..|-.+-+.++......+...
T Consensus       318 l~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        318 LADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             HhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            44432222222233444445555556777777777776655444444444434333443333333444565666666666


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      |..-..+..+..+.+-..|+-..|-.+-+-+ +..+...++..|.--..++.+..+.+--.++...|-.+-+-+|..+..
T Consensus       398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            6555555666655444445555555555566 777777777777766667677666555556666666666777888888


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHH-HHHHHhhhhhhhhcCCCCchhhHHHhhhhcc
Q 009622          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG-LENILKVGEAEKNLGNTDVNVFTQMIDDAEG  467 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~-l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (530)
                      .|+.+|.-=... +++.++.|--.++...|..+-+.++......++.. -..+. ....           ....|...+.
T Consensus       477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~-~~~~-----------l~~~~~~~~~  543 (2710)
T PRK14707        477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV-DELQ-----------LRKAFDAHQV  543 (2710)
T ss_pred             HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc-cchh-----------hhhhhhhHHH
Confidence            787777765554 44566666666677777777777776543333322 22222 1111           2333344444


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          468 LEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       468 ~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ...+.-|..+++.+....+..-|-..+
T Consensus       544 ~~~lnalSKwp~s~~C~~A~~~iA~~l  570 (2710)
T PRK14707        544 VNTLKALSKWPDKQLCAVAASGLAERL  570 (2710)
T ss_pred             HHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence            455566666666666655555444443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=0.018  Score=58.93  Aligned_cols=333  Identities=13%  Similarity=0.138  Sum_probs=165.9

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---hhhH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---SEHT  152 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~---~~~~  152 (530)
                      ..+.+.|.+++...+..|+..+..+...+ .+ .     .+++..++++.-...+.+++.. +.....++-..   ....
T Consensus        23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnG-e~-~-----p~Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~   94 (948)
T KOG1058|consen   23 DEIKEKLEKGDDEVKIEAMKKIIALMLNG-ED-L-----PSLLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLL   94 (948)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHcC-CC-c-----hHHHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccH
Confidence            46778889999999999998887776654 22 1     1234445554433332555543 33333443321   2222


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..++  =+-..+-+=|+++++-+|-..++.|+.+  ..++    ++ ...+|.+...+ .+.+.-++++|..|+..+...
T Consensus        95 ~EMI--Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~E----Ll-epl~p~Iracl-eHrhsYVRrNAilaifsIyk~  164 (948)
T KOG1058|consen   95 HEMI--LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPE----LL-EPLMPSIRACL-EHRHSYVRRNAILAIFSIYKN  164 (948)
T ss_pred             HHHH--HHHHHHhhhccCchHhhcchhhhhhhhc--CcHH----Hh-hhhHHHHHHHH-hCcchhhhhhhheeehhHHhh
Confidence            2222  1124455567789999999999999887  2222    12 22566677777 888999999999999888765


Q ss_pred             CCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHh----------------ccCChHHHHHH-------------H
Q 009622          233 KPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYL----------------SDGTNDKIQAV-------------I  282 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l----------------~~~~~~~~~~~-------------~  282 (530)
                      ..    .....+-..+-++|.. .|+....+|...|...                ..-++...-.+             .
T Consensus       165 ~~----~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~  240 (948)
T KOG1058|consen  165 FE----HLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE  240 (948)
T ss_pred             hh----hhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH
Confidence            21    1111222223333332 2444444433322221                11111000000             0


Q ss_pred             HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 009622          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ  362 (530)
Q Consensus       283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  362 (530)
                      +...+..+..+|.+.++.++..|..++..++.... ...     -....++.++....+-.++--...-|..+...+...
T Consensus       241 ~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk-----~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~i  314 (948)
T KOG1058|consen  241 KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALK-----AAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKI  314 (948)
T ss_pred             hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHH-----HHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHH
Confidence            11233444444444444444444444444432111 100     012223333322212233333333333332211111


Q ss_pred             HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622          363 IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       363 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~  442 (530)
                           -.|++--++++|.++|.+++..++.....++...+.+....+....+.+.--. =...+.+.++..+.++.....
T Consensus       315 -----l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav  388 (948)
T KOG1058|consen  315 -----LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAV  388 (948)
T ss_pred             -----HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhh
Confidence                 12455667778899999999999999999988766665555444333332222 112233455555566555543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.26  E-value=0.043  Score=52.60  Aligned_cols=203  Identities=11%  Similarity=0.079  Sum_probs=146.8

Q ss_pred             HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh-----hHHHhh--cCchHHHHHhhcCCCchhHHHHHHHH
Q 009622          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ-----TQCVIE--YQALPCLLNLLSGNYKKSIKKEACWT  351 (530)
Q Consensus       279 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-----~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (530)
                      +.+...+++..|+..|..-+.+.+..+..+++++.......     .+.+..  ..++..|+.-..   ++++--.+...
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence            44666799999999999999999999999999998764333     223332  234444444443   45555566666


Q ss_pred             HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhccCCCChH
Q 009622          352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---GCIKPLCDLLVCPDPR  428 (530)
Q Consensus       352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~l~~L~~lL~~~~~~  428 (530)
                      |..++.. +...+.++....+..+.+.+..++.+|...|..++..+.... +.....++..   .....+..+|.+++.-
T Consensus       147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYv  224 (335)
T PF08569_consen  147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYV  224 (335)
T ss_dssp             HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred             HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence            6666554 566778888889999999999999999999999999987764 3444444443   3467888899999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       429 v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ++..++..|+.++.......-        ....+.+..-+..+..|..++...|+-.|..+..=|.
T Consensus       225 tkrqslkLL~ellldr~n~~v--------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV  282 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFNV--------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV  282 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHH--------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             eehhhHHHHHHHHHchhHHHH--------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence            999999999999976655332        3567777778899999999999999999998887443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.24  E-value=0.018  Score=48.01  Aligned_cols=130  Identities=13%  Similarity=0.109  Sum_probs=103.2

Q ss_pred             HHHHHhCcHHHHHHhhCCCC------chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHH
Q 009622          279 QAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWT  351 (530)
Q Consensus       279 ~~~~~~~~i~~L~~lL~~~~------~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~  351 (530)
                      ..++..+++..|++++.++.      ..+...++.++..+..+. ......+...++..+........ +..+...|...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45777899999999998866      367777888888887653 33345666778888888887664 67899999999


Q ss_pred             HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009622          352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL  409 (530)
Q Consensus       352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  409 (530)
                      |-+++..++.....+.+.=-++.|+..|+..+++++.+|...+..+...++...++.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9999998777666666655699999999999999999999999999888776655543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.23  E-value=0.017  Score=50.41  Aligned_cols=93  Identities=23%  Similarity=0.241  Sum_probs=74.7

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh
Q 009622          256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (530)
Q Consensus       256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  335 (530)
                      ++.++.+++.+++.++...+....     ..++.+...|.++++.+|..|+.+|..+.....-.    .+..++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence            567899999999999876654433     56789999999999999999999999998643211    123344778888


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcC
Q 009622          336 LSGNYKKSIKKEACWTVSNITAG  358 (530)
Q Consensus       336 L~~~~~~~v~~~a~~~L~nl~~~  358 (530)
                      +.++ ++.|+..|..++..+...
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8888 999999999999999764

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.13  E-value=0.022  Score=54.62  Aligned_cols=202  Identities=14%  Similarity=0.132  Sum_probs=138.1

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh-----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      .+...+.+..|+..|..-+-+.+..+..+++++.......+     +.+... .-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            45556888899999988889999999999999986554332     223221 122222333334466676677777777


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCCchhHHHH
Q 009622          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~~~~~a  305 (530)
                      .++.............+-.+...+..++=++..+|..++..+...........+..   .++.....+|.+++.-++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            76664333334445556667777888888999999999988776665555555544   456788889999999999999


Q ss_pred             HHHHhHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       306 ~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      +..||.+.......   ...+-+..-+..++.+|.+. +..++.+|..+.--+.+
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence            99999998643322   23333556789999999998 99999999999888777

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.095  Score=53.77  Aligned_cols=167  Identities=18%  Similarity=0.186  Sum_probs=108.1

Q ss_pred             HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009622          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI  367 (530)
Q Consensus       288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (530)
                      +.+-+++.+.++-+|.....+++---.+..       +.+++..|+..-.++.+.+||+.|.-+|+-++..+++++    
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~----  590 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL----  590 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc----
Confidence            455566777777777776666543222222       235677788775555489999999999999999888753    


Q ss_pred             HhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          368 EANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       368 ~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                           |..+.+|.. .++.||.-++.||+-.+.+.....        ++..|-.+.+++..-|++.|+-++..|+.....
T Consensus       591 -----~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~  657 (929)
T KOG2062|consen  591 -----PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE  657 (929)
T ss_pred             -----hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence                 455566654 489999999999998887643221        244444455566666899999998888754322


Q ss_pred             hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009622          447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL  490 (530)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il  490 (530)
                      .       .++-.     .|..+.++.+....+++.-.+--.|+
T Consensus       658 ~-------~~pkv-----~~frk~l~kvI~dKhEd~~aK~GAil  689 (929)
T KOG2062|consen  658 Q-------LCPKV-----NGFRKQLEKVINDKHEDGMAKFGAIL  689 (929)
T ss_pred             c-------cCchH-----HHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            1       11112     23345667777777777654444444

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.09  E-value=0.027  Score=53.65  Aligned_cols=192  Identities=19%  Similarity=0.192  Sum_probs=123.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--Ch
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS  149 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~--~~  149 (530)
                      .+...+..+.......+..++..+.+++...  ...+.+.  ...++..+.+.++.+. .+-+..|+.+++-++-.  ..
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence            3677888888888999999999999998763  3333332  2446788888888887 56666777766666552  22


Q ss_pred             hhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhC---CCchhhhhHhhcCChHHHHH--hhc---------CC
Q 009622          150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAG---DSPRCRDLVLSQGGLVPLLA--QLN---------GQ  213 (530)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~---~~~~~~~~i~~~~~i~~Ll~--ll~---------~~  213 (530)
                      .....+++ .+.|.|.+.+...  ...++..|+.+|+-++.   ..+......++  .+..+..  ...         ..
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            33444443 4578888888763  45677777777776653   22221111111  2221111  111         12


Q ss_pred             CchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622          214 PKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       214 ~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      +++.+...|+.+++-|...-+... .......+|.|..+|.++|.+|+..|..+|.-+.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            245688888888877776544322 2345778999999999999999999988887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.07  E-value=0.0017  Score=51.12  Aligned_cols=70  Identities=17%  Similarity=0.291  Sum_probs=59.5

Q ss_pred             ChHHHHhcc-CCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009622          414 CIKPLCDLL-VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~l~~L~~lL-~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~  492 (530)
                      ++..|+.+| .+.|+.++..|+.-|+.+++..+.           .+..+++.|+.+.+.+|++|+|++|+..|...+++
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-----------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk  112 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-----------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK  112 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-----------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-----------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            478888989 456888999999999999988765           37788999999999999999999999999999988


Q ss_pred             hC
Q 009622          493 YW  494 (530)
Q Consensus       493 ~~  494 (530)
                      +.
T Consensus       113 lm  114 (119)
T PF11698_consen  113 LM  114 (119)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.01  E-value=0.005  Score=47.16  Aligned_cols=67  Identities=18%  Similarity=0.240  Sum_probs=56.8

Q ss_pred             hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009622          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVI  367 (530)
Q Consensus       301 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (530)
                      ++...+++++|++..++.....+.+.|.++.++.....+ .+|-+|+.|.|++.|++.++++....+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            466789999999999998888999999999999887543 2799999999999999999888765444

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.34  Score=50.32  Aligned_cols=368  Identities=15%  Similarity=0.135  Sum_probs=174.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+=.+.++.++.|+..+...-..+..+....  +..-.     +...+..-+.... +..+..|++.|+.+..++.-.  
T Consensus        65 ~ff~~tKlfQskd~~LRr~vYl~Ikels~is--edvii-----vtsslmkD~t~~~-d~yr~~AiR~L~~I~d~~m~~--  134 (865)
T KOG1078|consen   65 LFFAITKLFQSKDVSLRRMVYLAIKELSKIS--EDVII-----VTSSLMKDMTGKE-DLYRAAAIRALCSIIDGTMLQ--  134 (865)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHhhccccc--hhhhh-----hhHHHHhhccCCC-cchhHHHHHHHHhhcCcchhH--
Confidence            4455666677777777666555555553321  11110     1223333333334 678889999999888743211  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                           ++=.++-+.+-+.++.+...++-.=..+..-+.. .+..      ......-. .+.+.-++..++..|..+-..
T Consensus       135 -----~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw------~neiqea~-~s~~~m~QyHalglLyqirk~  202 (865)
T KOG1078|consen  135 -----AIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRW------ANEVQEAV-NSDNIMVQYHALGLLYQIRKN  202 (865)
T ss_pred             -----HHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHH------HHhhhhcc-CcHHHHHHHHHHHHHHHHHhh
Confidence                 1112233333334444443333222222111111 1111      11111111 333445667777777776543


Q ss_pred             CCCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622          233 KPQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L  309 (530)
                      +        .-++..++..+...   ++-...-..+....+.....     ....-+.+.+-.++.+....+...|.+++
T Consensus       203 d--------rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~-----~~~s~~~~fl~s~l~~K~emV~~EaArai  269 (865)
T KOG1078|consen  203 D--------RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQ-----QADSPLFPFLESCLRHKSEMVIYEAARAI  269 (865)
T ss_pred             h--------HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcc-----cchhhHHHHHHHHHhchhHHHHHHHHHHH
Confidence            2        11222222222221   11111111111122222111     11123456666778888888999999999


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHH
Q 009622          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE  389 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  389 (530)
                      .++.........     ..+..|..+++++ ...+|..|..+|..++...|.....     .=..|-.++.+.+   |.-
T Consensus       270 ~~l~~~~~r~l~-----pavs~Lq~flssp-~~~lRfaAvRtLnkvAm~~P~~v~~-----cN~elE~lItd~N---rsI  335 (865)
T KOG1078|consen  270 VSLPNTNSRELA-----PAVSVLQLFLSSP-KVALRFAAVRTLNKVAMKHPQAVTV-----CNLDLESLITDSN---RSI  335 (865)
T ss_pred             hhccccCHhhcc-----hHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHhCCccccc-----cchhHHhhhcccc---cch
Confidence            888765554332     2677788888888 8899999999999998754432211     1112223333332   333


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHH
Q 009622          390 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE  469 (530)
Q Consensus       390 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (530)
                      |..|+..+...|+......|..  -+..++.=++++..-++..++.+|......  +...    -.+-+..++.+.||++
T Consensus       336 at~AITtLLKTG~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~fp~--k~~~----~m~FL~~~Lr~eGg~e  407 (865)
T KOG1078|consen  336 ATLAITTLLKTGTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLKFPR--KHTV----MMNFLSNMLREEGGFE  407 (865)
T ss_pred             hHHHHHHHHHhcchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhhccH--HHHH----HHHHHHHHHHhccCch
Confidence            4555555655555555555442  223333333333333333333333333211  1110    1222445555566654


Q ss_pred             HHHHH------hcCCCHHHHHHHHHHHHHhCCCCC
Q 009622          470 KIESL------QTHDNAEIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       470 ~l~~l------~~~~~~~v~~~a~~il~~~~~~~~  498 (530)
                      .....      +-..+++-++.+..-+=.|+++-+
T Consensus       408 ~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce  442 (865)
T KOG1078|consen  408 FKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE  442 (865)
T ss_pred             HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc
Confidence            43332      234566666666666666665433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.94  E-value=0.051  Score=58.58  Aligned_cols=147  Identities=18%  Similarity=0.184  Sum_probs=115.9

Q ss_pred             hhhchHHHHHHhhc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhc
Q 009622          240 QVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       240 ~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~  314 (530)
                      ....+.|.++.+.+    ..||+++..|.-+|+.+..-+..    +.+ .-++.|+..+. ++++.+|.+++-++|.++.
T Consensus       916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDlav  990 (1251)
T KOG0414|consen  916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV  990 (1251)
T ss_pred             HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence            34567788888874    45799999999999988754432    222 45688888887 6889999999999999987


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009622          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                      ..+...+     ..-+.|...|.+. ++.+|+.|..+|++|...+.     +--.|.+..+..++.+++.+++.-|-..+
T Consensus       991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen  991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred             hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence            6665442     3456788889988 99999999999999976532     22368999999999999999999999888


Q ss_pred             HHhhcCCC
Q 009622          395 SNATSGGT  402 (530)
Q Consensus       395 ~nl~~~~~  402 (530)
                      ..++..++
T Consensus      1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred             HHhhhccc
Confidence            88887764

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.86  E-value=1.2  Score=50.06  Aligned_cols=146  Identities=10%  Similarity=0.080  Sum_probs=100.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..++..+..+-..++-.|+++|..+....+.--....++.|+.    .-+.++. ..+|..|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            456666677777889999999999999876422222233333333    3333344 78999999999988876676655


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      ...     ..+..-+.++...+|..++.++..+|...|.+-...   .+...++.-. .+....+..-++.++..+-..+
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~---~~cakmlrRv-~DEEg~I~kLv~etf~klWF~p  962 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV---DMCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP  962 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH---HHHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence            554     345666667888999999999999998888654331   1233344444 4445558999999999888776

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.82  E-value=0.0034  Score=49.43  Aligned_cols=73  Identities=14%  Similarity=0.202  Sum_probs=61.9

Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.++|++||.+|+.|+..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4688999999655488889999999999999878888777788999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.82  E-value=0.013  Score=61.36  Aligned_cols=193  Identities=18%  Similarity=0.121  Sum_probs=131.4

Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-------------ChhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 009622          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-------------PFDQVSPALPALAHLIHSNDDEVLTDACWALS  268 (530)
Q Consensus       202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-------------~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~  268 (530)
                      +...++.+|.   ++++-..+..+++-+..+.+..             .......++|.++..+.+.+......-+.+|+
T Consensus       816 ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  816 IAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence            3455666662   2444455555666555543210             11234678999999998778888888888888


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc--hhHHH
Q 009622          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSIKK  346 (530)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~~v~~  346 (530)
                      ++..+-+..+-.---..++|.|++.|+-++..++..++.++.-+....+.....-+ ..++|.++.+-.+..+  ..||.
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHH
Confidence            88776554221111236788888999999999999999999888765554332222 3567777777766622  57899


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622          347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                      .|..+|..++...|...-......++..|+..|+++..-||++|..+=.+..
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            9999999999844443333445568889999999888899999987755543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.78  E-value=0.064  Score=55.60  Aligned_cols=243  Identities=14%  Similarity=0.063  Sum_probs=155.5

Q ss_pred             cCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-hhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHH
Q 009622          146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW  224 (530)
Q Consensus       146 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~  224 (530)
                      ......+...++.|+...|+.+.....+..+-....+|. .+...+.  +    ....++++.+.+.......-.--++.
T Consensus       491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~en~E~L~  564 (748)
T KOG4151|consen  491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGLENFEALE  564 (748)
T ss_pred             hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHHHHHHHHH
Confidence            334556666778899999999998877777777777776 3322211  1    12356666666633332222334677


Q ss_pred             HhhhhccCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhhCCCCchhH
Q 009622          225 TLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEFLMHPSPSVL  302 (530)
Q Consensus       225 ~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~~~  302 (530)
                      ++.||+........ ..-...++.+-.++..+++..+..++.++.||...+.-....+.+ ..-++.....+........
T Consensus       565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~  644 (748)
T KOG4151|consen  565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE  644 (748)
T ss_pred             HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence            88888877633332 333444555666677778889999999999998776544444444 2345555555655666667


Q ss_pred             HHHHHHHhHhhcCCchhhH-HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009622          303 IPALRTVGNIVTGDDMQTQ-CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (530)
Q Consensus       303 ~~a~~~L~nl~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  381 (530)
                      ..++.++..|+......+. ..-.......+..++.++ +..++......+.|+.....+....++....++.+..+-..
T Consensus       645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~  723 (748)
T KOG4151|consen  645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKL  723 (748)
T ss_pred             hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            7777777766655444443 222345677888888888 99999999999999777767777777777777776665443


Q ss_pred             CchhHHHHHHHHHH
Q 009622          382 AEFDIKKEAAWAIS  395 (530)
Q Consensus       382 ~~~~v~~~a~~aL~  395 (530)
                      .....++.+..+|.
T Consensus       724 ~~a~~~~~~~~~l~  737 (748)
T KOG4151|consen  724 NRAPKREDAAPCLS  737 (748)
T ss_pred             hhhhhhhhhhhHHH
Confidence            33334444444433

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.77  E-value=0.17  Score=45.78  Aligned_cols=187  Identities=13%  Similarity=0.149  Sum_probs=118.2

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------hCCCC--c---hhHHHHHHHHhHhhcCCchhhHH
Q 009622          256 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEF-------LMHPS--P---SVLIPALRTVGNIVTGDDMQTQC  322 (530)
Q Consensus       256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~l-------L~~~~--~---~~~~~a~~~L~nl~~~~~~~~~~  322 (530)
                      +++.++.|+.-|+.--+..++..-.+.. .|.+..|++=       +..++  .   .-...|+..+-.++. .++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            5666777776666654444443333332 2544444332       33222  1   223445555566666 6666678


Q ss_pred             HhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      ++++.+.-.|.+.|....    -+.+|-.+..+++.+.. ++++.+..+.+.+++|..++.++.++.-.|..|...+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            889998888888886542    24688899999999987 6788899999999999999999999988999999999988


Q ss_pred             hcCCCHHHHHHHHHc--------CChHHHHh-ccCCCChHHHHHHHHHHHHHHhhhh
Q 009622          398 TSGGTHEQIKFLVIQ--------GCIKPLCD-LLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       398 ~~~~~~~~~~~l~~~--------~~l~~L~~-lL~~~~~~v~~~al~~l~~ll~~~~  445 (530)
                      ...  .....++.+.        .++..++. +.+.+++.+...++.+..++.....
T Consensus       167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            873  3444443321        12333332 3456788888888888877775543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.72  E-value=0.11  Score=46.16  Aligned_cols=144  Identities=13%  Similarity=0.153  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChH
Q 009622           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVP  162 (530)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~  162 (530)
                      .-...|+..+.-++|.  .+....+.+..+--.|..+|...+    ..-+|..++.+++.+...+ .+....+...++||
T Consensus        94 nRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   94 NRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             chHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            3445677777777776  566677777775556667776432    4678999999999999844 55666677899999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-------CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-------~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      ..++.+...++.-+..|..++..|..++......+...       ..+..++..+.+.++..+.+.++.+..+|+.+.
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999999988776543322211       133344444446778899999999999998874

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.69  E-value=0.1  Score=53.03  Aligned_cols=157  Identities=15%  Similarity=0.128  Sum_probs=97.1

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009622          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (530)
Q Consensus       163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  242 (530)
                      .++...+ .+...+..|+..|.....+-|...+.     ++..+++++ .+.+..++..|+..|..+|.+.+    ..+.
T Consensus        27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~   95 (556)
T PF05918_consen   27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVS   95 (556)
T ss_dssp             HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred             HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHh
Confidence            3444554 56889999999999999998887666     688899999 88899999999999999998743    3457


Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC---CCCchhHHHHHHHHhHhhc-CCch
Q 009622          243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVT-GDDM  318 (530)
Q Consensus       243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~~~~~a~~~L~nl~~-~~~~  318 (530)
                      .+...|+++|.++++.....+=.+|..+...++.        +.+..+...+.   .++..+|+.++..|..-.. -..+
T Consensus        96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~  167 (556)
T PF05918_consen   96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE  167 (556)
T ss_dssp             HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence            7888999999998877666666667666544432        22233333333   4677789998887754332 1111


Q ss_pred             hhH--HHhhcCchHHHHHhhcC
Q 009622          319 QTQ--CVIEYQALPCLLNLLSG  338 (530)
Q Consensus       319 ~~~--~~~~~~~l~~L~~lL~~  338 (530)
                      ...  .-++.-++..+.++|.+
T Consensus       168 ~~~p~~E~e~~i~~~ikkvL~D  189 (556)
T PF05918_consen  168 LLTPQKEMEEFIVDEIKKVLQD  189 (556)
T ss_dssp             TS---HHHHHHHHHHHHHHCTT
T ss_pred             HhhchHHHHHHHHHHHHHHHHh
Confidence            111  12223345556666654

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.69  E-value=0.89  Score=46.35  Aligned_cols=287  Identities=13%  Similarity=0.097  Sum_probs=160.7

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009622           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (530)
Q Consensus        87 ~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  166 (530)
                      -..+..|+..++..+...+-.++..+     ....-+++.....++.|..+...|..++...........     ..+.+
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence            34677788888887766433333332     333345666655578899999999988885443111111     12222


Q ss_pred             hhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--------------------------CCchhHH
Q 009622          167 LLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------------------QPKLSML  219 (530)
Q Consensus       167 lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--------------------------~~~~~~~  219 (530)
                      .+.. ..++....-+.+|..|+.++...  ...+.+..+.|...+..                          +.+....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            3332 33444445566666666665544  12455566666655510                          0133344


Q ss_pred             HHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhh
Q 009622          220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFL  294 (530)
Q Consensus       220 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL  294 (530)
                      ...+..+.++.... .........+++..+..+.. +..+.....++..+-.+...   +.+...     .++..|....
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~  226 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV  226 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence            55555666666655 33344555666666555533 33444445555555444322   222222     2334444443


Q ss_pred             CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 009622          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQIQAVIE-  368 (530)
Q Consensus       295 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-  368 (530)
                      ...  .....+-.++.||+...-.+       ..+..|..+|..+     .+..+.+-|...+..+..+..+....-+. 
T Consensus       227 ~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~  297 (464)
T PF11864_consen  227 NSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF  297 (464)
T ss_pred             ccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence            323  56777888888988643322       2356677777322     14556678888888887755222221121 


Q ss_pred             h--CcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          369 A--NIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       369 ~--~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .  -+++.+...++.+++.|-.+++..+.++..
T Consensus       298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            2  278889999998888888888888888884

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.66  E-value=0.074  Score=44.40  Aligned_cols=127  Identities=13%  Similarity=0.103  Sum_probs=96.4

Q ss_pred             hhhhHhhcCChHHHHHhhcCCCc-----hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHH
Q 009622          193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACW  265 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~  265 (530)
                      +...++..+++..|++++.....     .++...++.++..|-...--.-.......+..++..+...  |..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            44567788899999999965442     5788889999999888742222233355666666666643  7889999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       266 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  319 (530)
                      .|-+++.+++.....+.+.=-++.|+..|...+..++..++..+..+....++.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            999999888876676666566899999999999999999999888887655433

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.31  Score=50.31  Aligned_cols=279  Identities=16%  Similarity=0.112  Sum_probs=157.1

Q ss_pred             cCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHh
Q 009622          115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN  185 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~n  185 (530)
                      .|+++.++..+...       +++.-.+.|++.+.++.+  ....-...+.+.-+++.++..++++.--++..++..++.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            58899999998421       123445667777777765  223333344444566777777888888899999999999


Q ss_pred             hhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh---hchHHHHHHhhcCCChhHHHH
Q 009622          186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV---SPALPALAHLIHSNDDEVLTD  262 (530)
Q Consensus       186 l~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~---~~~l~~L~~ll~~~d~~v~~~  262 (530)
                      +..+   +++...-..+.+...+++ .+.+-.++-.|+-|+..+..+. .......   .+.++.|+.+-+.-+.++...
T Consensus       487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence            9544   334444444667777888 5577788888888888888775 2222222   333444444444445555555


Q ss_pred             HHHHH-HHhccC----ChHHHHHHHHhCcHHHHHHhhCCCC------chhHHHHHHHHhHhhc---CCc--hhhHHHhhc
Q 009622          263 ACWAL-SYLSDG----TNDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT---GDD--MQTQCVIEY  326 (530)
Q Consensus       263 a~~~l-~~l~~~----~~~~~~~~~~~~~i~~L~~lL~~~~------~~~~~~a~~~L~nl~~---~~~--~~~~~~~~~  326 (530)
                      ++..+ .+.++.    ..+....+++ .++.....++.+++      .+-+..|.++|..+.+   .-+  ...-.-+..
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~  640 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV  640 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            55444 222221    1111111111 22223333333321      1223344444444322   111  111111234


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCc-hhHHHHHHHHHHHhhcCCC
Q 009622          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~nl~~~~~  402 (530)
                      ...|.+--++.+. -.++-.+|+-.+-+.+-...+.- . +--|+.+.+.+++.+.. ...-.++.-++.|+...|.
T Consensus       641 slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~-p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         641 SLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE-P-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             HHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh-h-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence            5666666677777 77788888888877765332221 1 11245666666666655 3677888999999988763

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.60  E-value=0.095  Score=49.99  Aligned_cols=191  Identities=18%  Similarity=0.201  Sum_probs=113.0

Q ss_pred             HHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh--hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--ChHHHHH
Q 009622          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQA  280 (530)
Q Consensus       205 ~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~--~~~~~~~  280 (530)
                      ..+..+ .+.....+..++..+.++........+.  ....++..+.+.++....+-+..++.+++-++-.  .......
T Consensus        47 ~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            334444 4556778888888888887665333222  2355677888888877665556666666655433  1222333


Q ss_pred             HHHhCcHHHHHHhhCCCC--chhHHHHHHHHhHhhcC---CchhhHHHhhcCchHHH--HHhhcCC---------CchhH
Q 009622          281 VIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVTG---DDMQTQCVIEYQALPCL--LNLLSGN---------YKKSI  344 (530)
Q Consensus       281 ~~~~~~i~~L~~lL~~~~--~~~~~~a~~~L~nl~~~---~~~~~~~~~~~~~l~~L--~~lL~~~---------~~~~v  344 (530)
                      +++ .+.+.|..++.++.  ..++..++.+|+-++..   ........+  ..+..+  ....+.+         .++.+
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            444 56788888887654  35666777777766542   222222111  123311  1222221         12457


Q ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          345 KKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       345 ~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      ...|+.+-+-|... +...+.... ...+|.|..+|++.+.+||..|..+|.-+...
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            77776555555553 332333333 34689999999999999999999999887653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.13  Score=50.46  Aligned_cols=149  Identities=12%  Similarity=0.195  Sum_probs=96.7

Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH-hcCchhHHHHHHHHHHHhhcCCCHHHHH-HHHHc
Q 009622          335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL-ENAEFDIKKEAAWAISNATSGGTHEQIK-FLVIQ  412 (530)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~-~l~~~  412 (530)
                      -..++ +..+|.-|+..|+|.+.+.|+.+...... ++..++.-| +..+.+|..++..+|..+.......... +++  
T Consensus       266 ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l--  341 (533)
T KOG2032|consen  266 KATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL--  341 (533)
T ss_pred             hccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--
Confidence            33445 67899999999999999877766555443 344444444 4447899999999999887754333222 221  


Q ss_pred             CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009622          413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET  492 (530)
Q Consensus       413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~  492 (530)
                      .+...+..+.++++++++..+..++..+.+.......      ..|.+.+  .++...+.--.+.+++.+...+...+..
T Consensus       342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e------~~Fte~v--~k~~~~lllhl~d~~p~va~ACr~~~~~  413 (533)
T KOG2032|consen  342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE------EFFTEQV--KKRLAPLLLHLQDPNPYVARACRSELRT  413 (533)
T ss_pred             hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch------hhhHHHH--HhccccceeeeCCCChHHHHHHHHHHHh
Confidence            2344577788999999999999999988876543221      1133322  2223333333577888887777777665


Q ss_pred             hCC
Q 009622          493 YWL  495 (530)
Q Consensus       493 ~~~  495 (530)
                      .++
T Consensus       414 c~p  416 (533)
T KOG2032|consen  414 CYP  416 (533)
T ss_pred             cCc
Confidence            544

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.52  E-value=0.19  Score=51.56  Aligned_cols=193  Identities=13%  Similarity=0.172  Sum_probs=138.8

Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  319 (530)
                      ....++|.|++++...|..++...+.-+-.....-   .+..++..+++.+..-+.+.++.++...+.++..++..-.  
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--  401 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence            55789999999999999999887666655544332   2345667889999999999999999999999988875322  


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCc-HHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI-IGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                       ...++..++..+..+-.++ +..+|-...-+++.++.......    ..++ ...+.+-+.++-..-|..+.+++....
T Consensus       402 -~~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  402 -KRNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             -hhhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence             1234445566666555544 78899999999998876532222    2232 345555567776778888888887766


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhh
Q 009622          399 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE  447 (530)
Q Consensus       399 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~  447 (530)
                      ..-....    +...+++.++.+.-+++..++..+..++...+...++.
T Consensus       476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            5332222    34467888888888999999999999999888776654

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.093  Score=54.79  Aligned_cols=223  Identities=12%  Similarity=0.151  Sum_probs=137.4

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009622          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (530)
Q Consensus       164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  243 (530)
                      .+..+.++-+.++-.++..|..++.... -...+...+++...+..+ .+.|.-+.-+|...+..||...|       ..
T Consensus       732 ai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~  802 (982)
T KOG4653|consen  732 AISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------ED  802 (982)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hh
Confidence            3344455667788899999999987543 345566777888889999 88888999999998888887643       55


Q ss_pred             hHHHHHHhh-cCCC---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622          244 ALPALAHLI-HSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       244 ~l~~L~~ll-~~~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  319 (530)
                      ++|.+...- ...+   .+.+-.+-.++.++...-.+....... -++..++..+.+++...|..++.++|+++.-....
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            677666633 2211   233333345555555433332222222 45677777788788888999999999998654433


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhcC-chhHHHHHHHHHH
Q 009622          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLENA-EFDIKKEAAWAIS  395 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~~-~~~v~~~a~~aL~  395 (530)
                      ....+ ..++..++.+...+...-+|+.|+..+..+..+.....-.+..   ......+....... +..++..|+.++-
T Consensus       882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            22211 2345556666666557889999999999988765432222211   12222333333222 4456666665554


Q ss_pred             Hh
Q 009622          396 NA  397 (530)
Q Consensus       396 nl  397 (530)
                      .+
T Consensus       961 ei  962 (982)
T KOG4653|consen  961 EI  962 (982)
T ss_pred             HH
Confidence            43

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=1.4  Score=45.86  Aligned_cols=299  Identities=15%  Similarity=0.098  Sum_probs=166.0

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHhhhC--CCchhhhhHhhcCChHH
Q 009622          136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAG--DSPRCRDLVLSQGGLVP  205 (530)
Q Consensus       136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~~~~~a~~~L~nl~~--~~~~~~~~i~~~~~i~~  205 (530)
                      .|+.++..+.+..++.+  +  .|+++.+...|..        ++..-.+.|++.++++..  ..+..-.-+++.-+++.
T Consensus       389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h  464 (970)
T COG5656         389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH  464 (970)
T ss_pred             HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            35555555554333221  2  4889999999832        345567788888888865  22222223334334555


Q ss_pred             HHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009622          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (530)
Q Consensus       206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (530)
                      ++..+ +++..-++..+|..++.+..+  -........+......++.+++-.++..|+-++..+..+.  .....+.+.
T Consensus       465 v~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sah  539 (970)
T COG5656         465 VIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAH  539 (970)
T ss_pred             hhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhh
Confidence            55555 677777888999999999444  3334445666777777888888888888888888877554  234444444


Q ss_pred             cHHHHHHhhCCC---CchhHHHHHHHH-hHhhcCCchhhHHHh---hcCchHHHHHhhcCCCc-----hhHHHHHHHHHH
Q 009622          286 VFPRLAEFLMHP---SPSVLIPALRTV-GNIVTGDDMQTQCVI---EYQALPCLLNLLSGNYK-----KSIKKEACWTVS  353 (530)
Q Consensus       286 ~i~~L~~lL~~~---~~~~~~~a~~~L-~nl~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~-----~~v~~~a~~~L~  353 (530)
                      +.+.+-++|.-.   +.+....+...+ +..+..-......+.   -...+.....++..+.+     .+-+..|...|.
T Consensus       540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~  619 (970)
T COG5656         540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR  619 (970)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence            444444444333   333333333222 111111000111111   11233333344433311     122344555555


Q ss_pred             HHhc------CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh
Q 009622          354 NITA------GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP  427 (530)
Q Consensus       354 nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~  427 (530)
                      .+.+      ..+...+.+ .....|..--++++.-.++-.+|+..+-+.+...  ..+.. +-=|+.+.+.+++.++.+
T Consensus       620 T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~s--keI~p-imwgi~Ell~~~l~~~~t  695 (970)
T COG5656         620 TIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFMS--KEIEP-IMWGIFELLLNLLIDEIT  695 (970)
T ss_pred             HHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH--HHhhh-hhhHHHHHHHhcccccch
Confidence            4433      233333332 2345555555667666788888888887776531  11111 223778888888888875


Q ss_pred             -HHHHHHHHHHHHHHhhhhhh
Q 009622          428 -RIVTVCLEGLENILKVGEAE  447 (530)
Q Consensus       428 -~v~~~al~~l~~ll~~~~~~  447 (530)
                       .....+..++.+++.+|.+.
T Consensus       696 ~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         696 AVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             hhhHHHHHHHHHHHHHhCccc
Confidence             66778888999999988543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.47  E-value=0.35  Score=46.17  Aligned_cols=171  Identities=16%  Similarity=0.118  Sum_probs=109.7

Q ss_pred             CCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhC-CCchh
Q 009622          116 GVVPRFV-EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG-DSPRC  193 (530)
Q Consensus       116 g~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~-~~~~~  193 (530)
                      +++..|+ ..+.+.+ +.+|..|+.||+-.+--+.+....     .++.+.+.++..+..++..|+.++..+.. ++...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3455554 6777887 899999999999999866644433     35678888877789999999999998873 22211


Q ss_pred             hhhH-------hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcC----CChhHHHH
Q 009622          194 RDLV-------LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTD  262 (530)
Q Consensus       194 ~~~i-------~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~----~d~~v~~~  262 (530)
                      -+..       .....+..+.+.+ .+.+++++..++..++.|........   ...++..|+-+--+    ++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            1111       1233555666666 56688999999999999887663333   23334433333222    24566665


Q ss_pred             HHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC
Q 009622          263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP  297 (530)
Q Consensus       263 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  297 (530)
                      ....+-..+.....+ +..+...+++.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            555665566555544 4455557777777766553

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.18  Score=52.73  Aligned_cols=220  Identities=10%  Similarity=0.105  Sum_probs=135.9

Q ss_pred             CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009622          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA  291 (530)
Q Consensus       212 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~  291 (530)
                      .++.+.++.+++..+..+.+...........+++......+++.|+-+--+++..+..+++-.++        .+++.+.
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~  808 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS  808 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence            45567788999999999998765666677788999999999999999888888888777765433        4556666


Q ss_pred             H-hhCCCC---chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009622          292 E-FLMHPS---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI  367 (530)
Q Consensus       292 ~-lL~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (530)
                      + ..+..+   .+.+...-.++++++..-.+....... -++..++...+++ +...|..++..++++|....-.....+
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            6 333221   233333345555555433322222222 4566677777766 788899999999999874332222222


Q ss_pred             HhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHH--HHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHh
Q 009622          368 EANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFL--VIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILK  442 (530)
Q Consensus       368 ~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~  442 (530)
                      . .++..++.+...+ .+-+|+.|+..+..+..+...+....+  .-.+....+..+.... +..+...+..++..+-.
T Consensus       887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a  964 (982)
T KOG4653|consen  887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA  964 (982)
T ss_pred             H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            1 2455555555444 688999999999999886554443322  1123333444444333 33344444445544433

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.46  E-value=0.35  Score=46.14  Aligned_cols=172  Identities=16%  Similarity=0.126  Sum_probs=114.9

Q ss_pred             hchHHHHH-HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc-hh
Q 009622          242 SPALPALA-HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQ  319 (530)
Q Consensus       242 ~~~l~~L~-~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~  319 (530)
                      .+++..++ +.+.+.++.++..++.+++-.+--+.....     ..++.+...+..++..++..|+.++..+....+ ..
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            36665544 788899999999999999988755543222     345667777777788999999999998864322 11


Q ss_pred             hHH-------HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC----chhHHH
Q 009622          320 TQC-------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA----EFDIKK  388 (530)
Q Consensus       320 ~~~-------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~~v~~  388 (530)
                      ...       .-...++..+.+.+.+. +++++..|+-.++.+.....-.-    ...++..|+-+.-++    +.++|+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ  174 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ  174 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence            111       11246788899999998 99999999999999876321110    123444454444332    467888


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP  425 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~  425 (530)
                      --...+-..+.. .+++ +..+...+++.+..+.+..
T Consensus       175 ~L~~Ffp~y~~s-~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  175 CLSVFFPVYASS-SPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHcC-CHHH-HHHHHHHHHHHHHHHHhCc
Confidence            777777777775 3344 3445566777777766543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.44  E-value=0.86  Score=44.84  Aligned_cols=222  Identities=13%  Similarity=0.133  Sum_probs=131.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCC
Q 009622          136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP  214 (530)
Q Consensus       136 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~  214 (530)
                      .|++.|-.+....+.....+.+.+++..++..++..-....+.  .-...-.... +..+.....       ...+ ...
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~   72 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ   72 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence            4677888888877788888899999999999885421111110  0000000010 111111110       0000 111


Q ss_pred             chhHHHHHHHHhhhhcc-CCC--CCCh-hhh-hchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009622          215 KLSMLRNATWTLSNFCR-GKP--QPPF-DQV-SPALPALAHLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (530)
Q Consensus       215 ~~~~~~~a~~~L~~L~~-~~~--~~~~-~~~-~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  286 (530)
                      ...+.+..+.++..+.. ...  .... ... ..++..|...+++.   .+.+...++..+..+..+.+.....+.+.|+
T Consensus        73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            23444555555555555 221  1111 222 44555677777655   5788899999999999998888899999999


Q ss_pred             HHHHHHhhC-CC---CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHH-HHHHHHHH----Hh
Q 009622          287 FPRLAEFLM-HP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKK-EACWTVSN----IT  356 (530)
Q Consensus       287 i~~L~~lL~-~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~-~a~~~L~n----l~  356 (530)
                      ++.+++.+. ..   +.++....-.+++.||- +....+.+.+.+.++.+++++.+.... ..+. ..+..+++    |.
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~  231 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM  231 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence            999999988 43   45566666677888876 445556788889999999999876211 1222 34444443    44


Q ss_pred             cCCHHHHHHHHH
Q 009622          357 AGNREQIQAVIE  368 (530)
Q Consensus       357 ~~~~~~~~~l~~  368 (530)
                      ++.|.....+++
T Consensus       232 RH~p~Lk~~i~~  243 (379)
T PF06025_consen  232 RHHPSLKPDIID  243 (379)
T ss_pred             ccCHHHHHHHHH
Confidence            555554444443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.37  E-value=0.53  Score=41.98  Aligned_cols=146  Identities=16%  Similarity=0.202  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-----CchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHH
Q 009622          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-----SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCL  332 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L  332 (530)
                      -..+++..+..++++++. ...++++.+--.+..+|...     .+-.|..+++.+|.++..++ +....++..+++|..
T Consensus        95 RVcnaL~LlQcvASHpdT-r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   95 RVCNALALLQCVASHPDT-RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             hHHHHHHHHHHHhcCcch-HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            345666667777776654 45688888877888888654     35688999999999997655 455666789999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------hCcHHHHH-HHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009622          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------ANIIGPLV-ALLENAEFDIKKEAAWAISNATSGGTH  403 (530)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~i~~L~-~ll~~~~~~v~~~a~~aL~nl~~~~~~  403 (530)
                      ++.+..+ +..-+..|..++..+...+ ....++.+        ..++..++ .+.+.+++++-+.++.+..+++.  ++
T Consensus       174 Lrime~G-SelSKtvA~fIlqKIlldD-~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd--np  249 (293)
T KOG3036|consen  174 LRIMESG-SELSKTVATFILQKILLDD-VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD--NP  249 (293)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHHHhhcc-ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CH
Confidence            9999999 8889999999999987643 22222221        12233333 34456689999999999999988  44


Q ss_pred             HHHHHH
Q 009622          404 EQIKFL  409 (530)
Q Consensus       404 ~~~~~l  409 (530)
                      ..+..+
T Consensus       250 rar~aL  255 (293)
T KOG3036|consen  250 RARAAL  255 (293)
T ss_pred             HHHHHH
Confidence            544443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.28  Score=48.23  Aligned_cols=267  Identities=15%  Similarity=0.124  Sum_probs=142.4

Q ss_pred             CChHHHHHhh----CCCCHHHHHHHHHHHHhhhCCCch-hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          159 GAVPIFVKLL----YSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       159 g~i~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      |.+..++..+    .+++..++..|+..|+|.+...|. ++..  ..-.+..++.-|.++.+.++...++.+|..+....
T Consensus       254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~  331 (533)
T KOG2032|consen  254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA  331 (533)
T ss_pred             ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence            4454444444    347778999999999999988553 2222  22345566666646667899998988888877654


Q ss_pred             CCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHHH---HHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009622          234 PQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAV---IEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       234 ~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~---~~~~~i~~L~~lL~~~~~~~~~~a~~~  308 (530)
                      ..... ...-.+.-.+..+..+.+++++..+...++.++...... ...+   +..+ ...++-.+.+.++.+ ..||+.
T Consensus       332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~-~~~lllhl~d~~p~v-a~ACr~  409 (533)
T KOG2032|consen  332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKR-LAPLLLHLQDPNPYV-ARACRS  409 (533)
T ss_pred             hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhc-cccceeeeCCCChHH-HHHHHH
Confidence            32222 222334445667788899999999998888876322111 1111   2212 233444455555543 455666


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK-EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      ....+..+- ..+..  .++++.   .+ ...-+..+. ..-|+ ..+....++....+..     ....++++.=+.+|
T Consensus       410 ~~~~c~p~l-~rke~--~~~~q~---~l-d~~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr  476 (533)
T KOG2032|consen  410 ELRTCYPNL-VRKEL--YHLFQE---SL-DTDMARFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQVR  476 (533)
T ss_pred             HHHhcCchh-HHHHH--HHHHhh---hh-HHhHHHHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHHHH
Confidence            555543211 11111  112221   11 110111111 12231 1222223333222221     12223333333555


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622          388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~  442 (530)
                      ..|...-.++..+-.+..+.+.-...+...+..+...+-+++...+..++..+..
T Consensus       477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            5555555555554444555444334456678888888999999999999887764

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.24  E-value=2.9  Score=47.18  Aligned_cols=258  Identities=14%  Similarity=0.115  Sum_probs=137.8

Q ss_pred             hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHH
Q 009622          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAE  292 (530)
Q Consensus       216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~  292 (530)
                      ..+..+.+.++....---+.+...+...+=..|.+++-..+......|..|++.++..   .-.....++.  ..-..++
T Consensus      1094 ~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~--~~~k~le 1171 (1692)
T KOG1020|consen 1094 AQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFS--CYLKLLE 1171 (1692)
T ss_pred             HHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHH--HHHHHHH
Confidence            3444444444444333333444444455555555555555555566677777777653   2222222221  1112222


Q ss_pred             hhCCC--------CchhHHHHHHHHhHhhcCCch-----------hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622          293 FLMHP--------SPSVLIPALRTVGNIVTGDDM-----------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       293 lL~~~--------~~~~~~~a~~~L~nl~~~~~~-----------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      .+++.        ........+.++|-++++.+.           +....+..+++..|.-..++. +..+|..|...++
T Consensus      1172 ~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg 1250 (1692)
T KOG1020|consen 1172 VIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLG 1250 (1692)
T ss_pred             HHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHH
Confidence            22332        224566788889988873220           111234556777777777777 8999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH--HHHHHHHHHHhhcCC---------------CHHHHHHHH------
Q 009622          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDI--KKEAAWAISNATSGG---------------THEQIKFLV------  410 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v--~~~a~~aL~nl~~~~---------------~~~~~~~l~------  410 (530)
                      .+|...+..   +....+...+...+.+.+...  +..++..+.-+....               ..+..+.+.      
T Consensus      1251 ~~ci~hp~l---~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~ 1327 (1692)
T KOG1020|consen 1251 FICIQHPSL---FTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGM 1327 (1692)
T ss_pred             HHHhhCchh---hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhccccccc
Confidence            999855442   333334444455554442221  333333333222110               112222221      


Q ss_pred             -HcCC--------hHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHH
Q 009622          411 -IQGC--------IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAE  481 (530)
Q Consensus       411 -~~~~--------l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  481 (530)
                       ..|+        ++.+++..-+.|..++..|+..+..++..|--.         +       -..+..|-.|-.++.+.
T Consensus      1328 ~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVh---------P-------~~cvPtLIAL~Tdp~~~ 1391 (1692)
T KOG1020|consen 1328 GSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVH---------P-------VHCVPTLIALETDPSQA 1391 (1692)
T ss_pred             ccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCC---------c-------cchhhhheeecCChHHH
Confidence             1111        222333223577888999999998888776321         1       12356777777788888


Q ss_pred             HHHHHHHHHHHhCC
Q 009622          482 IYEKSVKLLETYWL  495 (530)
Q Consensus       482 v~~~a~~il~~~~~  495 (530)
                      +++.|..++...+.
T Consensus      1392 ~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1392 IRHVADELLKEIDE 1405 (1692)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888876544

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.24  E-value=0.22  Score=48.51  Aligned_cols=175  Identities=14%  Similarity=0.187  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHH-HhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHh
Q 009622          173 DDVREQAVWAL-GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL  251 (530)
Q Consensus       173 ~~~~~~a~~~L-~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l  251 (530)
                      .+-+..|+.-| .-+|.++...-.... ..++..+++.+.++.+...+.-|+..|..+|+..+..-+....-++..+++.
T Consensus       301 a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea  379 (516)
T KOG2956|consen  301 ASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA  379 (516)
T ss_pred             hhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence            34455555534 344444322211111 1245667777856688999999999999999998766555555566666666


Q ss_pred             hcCCChhHHHHHHH-HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchH
Q 009622          252 IHSNDDEVLTDACW-ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (530)
Q Consensus       252 l~~~d~~v~~~a~~-~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~  330 (530)
                      -.+.++++...|.. ++.-++...+..        .+..+..++...+......++.++..++..-....-..+-..+.|
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP  451 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP  451 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence            66665555444433 333444444422        123355555557777777888888888765443222233457899


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          331 CLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       331 ~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      .+++-..+. +..||+.|.++|..+..
T Consensus       452 ~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  452 CVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence            999999998 99999999999988864

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.23  E-value=0.18  Score=45.68  Aligned_cols=139  Identities=14%  Similarity=0.191  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-----chhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHH
Q 009622          260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLL  333 (530)
Q Consensus       260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~  333 (530)
                      ..+++..+..++.+++. ...++++.+.-.|.++|+..+     +.+|..+++++|.++..++ +....+++.+++|..+
T Consensus        67 VcnaLaLlQ~vAshpet-r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   67 VCNALALLQCVASHPET-RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHHH-TTT-HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcChHH-HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            34566666677776654 466889999888999987653     4578899999999997544 5667778999999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------hCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCC
Q 009622          334 NLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------ANIIGPLVAL-LENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       334 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      ..+..+ +.-.|..|..++..+..++ ....++.+        ..++..++.. ...+++++-+.++.+...++.+.
T Consensus       146 r~me~G-selSKtvAtfIlqKIL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  146 RIMEFG-SELSKTVATFILQKILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHHHS--HHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHHHhc-cHHHHHHHHHHHHHHHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            999998 8888889999998887642 22222221        1244444443 45558899999999999999853

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.22  E-value=0.51  Score=50.34  Aligned_cols=197  Identities=20%  Similarity=0.222  Sum_probs=119.9

Q ss_pred             HHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHH--HHHHhhcCCCh-h
Q 009622          182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDD-E  258 (530)
Q Consensus       182 ~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~--~L~~ll~~~d~-~  258 (530)
                      +|+++....+.....+.+.+++..+...+......++...++..+.+++...+..........+.  .+-.++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45577777787888889999999999999766788999999999999998764433332222222  33333333333 6


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009622          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG  338 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~  338 (530)
                      .-..++..++.+....++........               .+......++..+.....   ......-+.+.+..++..
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~---------------~~~~~l~e~i~~~~~~~~---~~~~~~~f~~~~~~il~~  635 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRN---------------SVNELLVEAISRWLTSEI---RVINDRSFFPRILRILRL  635 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchH---------------HHHHHHHHHhhccCccce---eehhhhhcchhHHHHhcc
Confidence            66677777777665543311111111               111222222222222111   111121222225566665


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHH
Q 009622          339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISN  396 (530)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~n  396 (530)
                      +..+..+..|.|++.+++..+++..+.+.+.++++.+.+.-... ...++.++...+.+
T Consensus       636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  694 (699)
T KOG3665|consen  636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES  694 (699)
T ss_pred             cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence            55788999999999999998888888888889988887764333 45566665555443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.17  E-value=1.4  Score=47.45  Aligned_cols=239  Identities=17%  Similarity=0.179  Sum_probs=136.1

Q ss_pred             hchHHHHHHhhcC-----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC----CCC----chhHHHHHHH
Q 009622          242 SPALPALAHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM----HPS----PSVLIPALRT  308 (530)
Q Consensus       242 ~~~l~~L~~ll~~-----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~----~~~~~~a~~~  308 (530)
                      .+.+..++.++.+     .+.+....++..|.+++.- ..+.+.+++.+.++.|+..+.    .+.    ..+.+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            3445555555543     2345666667777776655 455677888999999888874    333    5666777777


Q ss_pred             HhHhhcCCchhhHHH----h--------hcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009622          309 VGNIVTGDDMQTQCV----I--------EYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (530)
Q Consensus       309 L~nl~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (530)
                      +..+...........    .        ....+..|++.+.+..   ++.+....+.+|.+++.++++..+.+++  .+.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence            666654322111000    0        1123666666666542   5788999999999999999998888876  233


Q ss_pred             HHHHHHhcC--chhHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhccCCCC--------hH--------HH
Q 009622          374 PLVALLENA--EFDIKKEAAWAISNATSGG-----THEQIKFLVIQGCIKPLCDLLVCPD--------PR--------IV  430 (530)
Q Consensus       374 ~L~~ll~~~--~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~~--------~~--------v~  430 (530)
                      ..+++=.-+  ...--...+..++.++.+-     .......+++.|++...+++|...-        ++        -+
T Consensus       273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            333322111  0000122255555555422     2356677788899888877774322        11        12


Q ss_pred             HHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-hcCCCHHHHHHHHHHHHHhCC
Q 009622          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ..+|..|.-+....+.            ...+...+++..+..| +.+....|-..|..+|+.+-+
T Consensus       353 p~iL~lL~GLa~gh~~------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  353 PYILRLLRGLARGHEP------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHHhcCHH------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            2334444433333222            1222335566666666 344577788888888876654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.15  E-value=1.9  Score=46.48  Aligned_cols=206  Identities=15%  Similarity=0.174  Sum_probs=124.6

Q ss_pred             hCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCc----hhHHHHHHH
Q 009622          157 DHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATW  224 (530)
Q Consensus       157 ~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~----~~~~~~a~~  224 (530)
                      +.|++..++.++.+     ....+....+..|...+.- +.+|+.+++.++++.|+..+.   ....    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            45788888888865     2345556666666655544 568999999999999999884   2322    566666666


Q ss_pred             HhhhhccCCCCCChh-------------hhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 009622          225 TLSNFCRGKPQPPFD-------------QVSPALPALAHLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVF  287 (530)
Q Consensus       225 ~L~~L~~~~~~~~~~-------------~~~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i  287 (530)
                      ++-.+..........             ....-+..++..+.+.    ++.+....++.|.+|+.+.++..+.+++    
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~----  269 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE----  269 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH----
Confidence            655554432111100             1223355666666543    6889999999999999998887776654    


Q ss_pred             HHHHHhhCCC-----CchhHHHHHHHHhHhhcCCc------hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622          288 PRLAEFLMHP-----SPSVLIPALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       288 ~~L~~lL~~~-----~~~~~~~a~~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                       .+-+.++-+     ...--...+.+++.++.+-+      ...+.+++.|++...+..|... -|...           
T Consensus       270 -~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~~-----------  336 (802)
T PF13764_consen  270 -HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSLK-----------  336 (802)
T ss_pred             -HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Ccccc-----------
Confidence             223333211     11111233666666665432      4566778889999888888765 44331           


Q ss_pred             cCCHHHHHHHHHhCcHHHHHHHHh
Q 009622          357 AGNREQIQAVIEANIIGPLVALLE  380 (530)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~ll~  380 (530)
                      ....+.....+....+|..+.+|.
T Consensus       337 ~~~s~eWk~~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  337 NTDSPEWKEFLSRPSLPYILRLLR  360 (802)
T ss_pred             cCCCHHHHHHhcCCcHHHHHHHHH
Confidence            112333444555566666666554

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.06  E-value=0.39  Score=46.95  Aligned_cols=175  Identities=11%  Similarity=0.120  Sum_probs=106.7

Q ss_pred             chhHHHHHHHHhh-hhccCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009622          215 KLSMLRNATWTLS-NFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (530)
Q Consensus       215 ~~~~~~~a~~~L~-~L~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~  292 (530)
                      ..+-+..|+.-|. -+|.+.-..-......++..++..|.. .+..+..-|++.|..++.+.+.....-.+ -.+..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence            3444455555333 334432222223446677778888876 67788889999999999876644321111 23445555


Q ss_pred             hhCCCCchhHHHHHHH-HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhC
Q 009622          293 FLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEAN  370 (530)
Q Consensus       293 lL~~~~~~~~~~a~~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~  370 (530)
                      .-.+....+...|... +.-+++..+...        +..+..++... +...-..+...+..++.. +.+....++ ..
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~d  448 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PD  448 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hh
Confidence            5555555555555444 334444444333        34455555555 555555666677777763 334333333 36


Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      +.|.+++..++.+..||+.|+++|..+...
T Consensus       449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             hhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            899999999999999999999999988763

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.04  E-value=0.6  Score=47.91  Aligned_cols=176  Identities=18%  Similarity=0.147  Sum_probs=121.1

Q ss_pred             HhhcCCChHHHHHHHHHHH--HhhcCCCCCcHHHHHHcCCHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622           80 AGVWSNDSGVQYECTTQFR--KLLSIERSPPIEEVIRSGVVPRFVEFLLRE---DYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        80 ~~l~s~~~~~~~~a~~~l~--~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~---~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      ..+...+.+....|...++  .++-++      .-+-+..-|.+.+...++   +++.++..|.-+|..+..-+.+.+. 
T Consensus       860 ~~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-  932 (1128)
T COG5098         860 SRIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-  932 (1128)
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-
Confidence            3445455555556665554  333332      112234456666666552   2489999999999988775555443 


Q ss_pred             HHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          155 VIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       155 ~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                          ..+|.|+..+. +++|.+|.+++-.++.++..-....+.     ....|.+-| .+.+..+++.++.++.+|.-..
T Consensus       933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag 1002 (1128)
T COG5098         933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred             ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc
Confidence                34799999997 699999999999999886433222222     355677777 7788999999999999987653


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                          ...+.|-++.+..+|.++|.++..-|-..+..++..+..
T Consensus      1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098        1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred             ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence                244578889999999999998877777777777765443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.99  E-value=0.087  Score=44.73  Aligned_cols=144  Identities=15%  Similarity=0.133  Sum_probs=99.8

Q ss_pred             HHHHHhhC--CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622          288 PRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       288 ~~L~~lL~--~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                      +.++..|.  ...+.++..+.-++..+..    ....-....+-+.+..++... +.+-...+..+++.+.-+.++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34444444  3566788888888888842    112222333445555666655 6667888899999998888888777


Q ss_pred             HH-HhCcHHHHHHHHh--cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChH-HHHHHHHHHHH
Q 009622          366 VI-EANIIGPLVALLE--NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPR-IVTVCLEGLEN  439 (530)
Q Consensus       366 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~-v~~~al~~l~~  439 (530)
                      ++ ..|+++.+..++.  ..+..++..++.+|..-+..   +.+...+...+++.|-..++ +++.. ++..++-+|.+
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            76 6789999999998  67889999999999887773   44555566677999999996 44555 66666666544

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.90  E-value=0.014  Score=34.10  Aligned_cols=30  Identities=17%  Similarity=0.305  Sum_probs=26.2

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      ++|.+++++.+++++||..|+++|+.++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.83  E-value=0.32  Score=44.38  Aligned_cols=104  Identities=20%  Similarity=0.243  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhh
Q 009622          386 IKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD  464 (530)
Q Consensus       386 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~  464 (530)
                      ....|+.+|.-++.- .+.....+.+...+..|+++|+ ...+.+...++.+|..++-..+.           ..+.|++
T Consensus       107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~-----------N~r~FE~  174 (257)
T PF08045_consen  107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE-----------NQRDFEE  174 (257)
T ss_pred             HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH-----------HHHHHHH
Confidence            344556666666654 3456667778899999999994 56788999999999999877665           3678999


Q ss_pred             hccHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCCCCCC
Q 009622          465 AEGLEKIESLQT--HDNAEIYEKSVKLLETYWLDDEDET  501 (530)
Q Consensus       465 ~~~~~~l~~l~~--~~~~~v~~~a~~il~~~~~~~~~~~  501 (530)
                      .+|+..+..+..  +.+.++.-++.+.+--|...+....
T Consensus       175 ~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~  213 (257)
T PF08045_consen  175 LNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSI  213 (257)
T ss_pred             hCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCC
Confidence            999999999864  4678899999999988887666543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.75  E-value=0.071  Score=45.34  Aligned_cols=147  Identities=11%  Similarity=0.057  Sum_probs=91.7

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      .+++.|+++|+.+.+..+|.+++++|+.|..-+|...+.+...  .+.-.  -...+........... .+...    .+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~----~e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPS----SE   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCc----hH
Confidence            4678899999888769999999999999999777665533221  11000  0111112222222111 11111    12


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      ...-..++..|++.+.+..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2233346778888885544455555677777777755555557778899999999999887788887777776653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.75  E-value=0.099  Score=37.42  Aligned_cols=66  Identities=26%  Similarity=0.380  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009622          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQG  413 (530)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  413 (530)
                      .+.|.|+++++++. +..+..+.+.++++.++++.... ...+|-.|.++|+-++.  +.+..+.|-+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999874 56666677789999999998755 58899999999999988  556666665544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.67  E-value=1.8  Score=46.37  Aligned_cols=174  Identities=13%  Similarity=0.194  Sum_probs=111.9

Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--HHHHHHHhCcHHHHHHHHhcCc-h
Q 009622          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--QIQAVIEANIIGPLVALLENAE-F  384 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--~~~~l~~~~~i~~L~~ll~~~~-~  384 (530)
                      ++.++...++.....+++.+++..+...+..-....++..+...++|++...+.  .......... ..+..++...+ .
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence            788899889999999999999999999998765778999999999999873221  1111111111 12222333333 3


Q ss_pred             hHHHHHHHHHHHhhcCCCH--------HHHHHH--------------HHcCChHH-HHhccC-CCChHHHHHHHHHHHHH
Q 009622          385 DIKKEAAWAISNATSGGTH--------EQIKFL--------------VIQGCIKP-LCDLLV-CPDPRIVTVCLEGLENI  440 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~~~~--------~~~~~l--------------~~~~~l~~-L~~lL~-~~~~~v~~~al~~l~~l  440 (530)
                      +.-..|+..|..+...++.        ...+.+              .....+.+ +..++. +..+..+..|++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            7777788888887765320        111111              11112223 444443 44556778888888888


Q ss_pred             HhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 009622          441 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKLLETY  493 (530)
Q Consensus       441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~il~~~  493 (530)
                      +...+.           ++..+.+.|++..+.++.. ....++...+..+++..
T Consensus       653 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  653 LEQNKE-----------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             HHcChh-----------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            876544           5777888999999888732 23666777777777654

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.67  E-value=0.68  Score=45.40  Aligned_cols=275  Identities=16%  Similarity=0.134  Sum_probs=142.1

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh-hccCCCCCCh
Q 009622          161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPPF  238 (530)
Q Consensus       161 i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~-L~~~~~~~~~  238 (530)
                      +.+++.-+.+ .+..+|..++--|+.-+.+.. ++..+...|....+++.+...++..+...++.++.. ++.+......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~-Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQ-FRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHH-HHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            4566666663 456788888888888887654 899999999999999999655554355555444444 4444444444


Q ss_pred             hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC---------CCCchhHHHHHHH
Q 009622          239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM---------HPSPSVLIPALRT  308 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~~~~~a~~~  308 (530)
                      ......+..+..++... ...+......       .......... ...+..+.+.+.         +....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~-------~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSDS-------SRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchhh-------hhhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            34455666667776611 0000000000       0000001010 012222222221         1222345556666


Q ss_pred             HhHhhc--------------CCchhhHHHhhcCchHHHHHhhcC----C------Cc-----hhHHHHHHHHHHHHhcCC
Q 009622          309 VGNIVT--------------GDDMQTQCVIEYQALPCLLNLLSG----N------YK-----KSIKKEACWTVSNITAGN  359 (530)
Q Consensus       309 L~nl~~--------------~~~~~~~~~~~~~~l~~L~~lL~~----~------~~-----~~v~~~a~~~L~nl~~~~  359 (530)
                      +-.++.              ..+...+.+...|++..++.++..    .      ..     ...-..+.++|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            555531              011223445567788888888752    1      01     123345677777777655


Q ss_pred             HHHHHHHHH--hCcHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH---HH----hccC---
Q 009622          360 REQIQAVIE--ANIIGPLVA----LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP---LC----DLLV---  423 (530)
Q Consensus       360 ~~~~~~l~~--~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~---L~----~lL~---  423 (530)
                      .++-.+++.  .+.++.+..    ........+...++..+.|++.+ +++.+..+...++...   +.    .++.   
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            444444443  233333332    22223345577889999999886 4344444443322211   11    1111   


Q ss_pred             ----CCChHHHHHHHHHHHHHHhhhh
Q 009622          424 ----CPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       424 ----~~~~~v~~~al~~l~~ll~~~~  445 (530)
                          ...-++...+++++.|+..+.+
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeCc
Confidence                1122466677777777776553

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.67  E-value=1.1  Score=46.13  Aligned_cols=110  Identities=20%  Similarity=0.200  Sum_probs=81.4

Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009622          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~  318 (530)
                      ..+.+.+..+++...+++..|+..+|..|..+...... +...+-.++...+..-+.+..+.+|..|+.+|+.+=.....
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d  159 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD  159 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence            36677788888888899999999999999988864322 22233336777888888889999999999999998632211


Q ss_pred             hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      .     +..+...+..+++++++++||+.|...+.+
T Consensus       160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            1     234677888888887789999987655543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.65  E-value=0.41  Score=49.28  Aligned_cols=258  Identities=14%  Similarity=0.132  Sum_probs=165.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHH
Q 009622           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      +-.+++.++..+.+.+..-...|.+.+..    --+.++..-++|.|+..+..++ ...+. ..+..++..... .+   
T Consensus       256 ~~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~l-tpl~k~~k~ld~-~e---  326 (690)
T KOG1243|consen  256 TLLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFL-TPLFKLGKDLDE-EE---  326 (690)
T ss_pred             HHHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhh-hHHHHhhhhccc-cc---
Confidence            34555666667777776666666664432    2234555667788777766554 11222 222222333221 22   


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                        +..+++|.|+++++.++..+|-.-+.-+-+....   ..+.+++..+++.+..-+ .+++..++...+.++..|+..-
T Consensus       327 --yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL  400 (690)
T KOG1243|consen  327 --YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKL  400 (690)
T ss_pred             --cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhh
Confidence              5568899999999999998887766666555443   334556667888888888 8889999999999998887653


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc-HHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-FPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                      ...  ......+..+..+-...+..++.+..-|++.++......    +..++ ...+...+.++-..-|..++..+...
T Consensus       401 ~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at  474 (690)
T KOG1243|consen  401 SKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAAT  474 (690)
T ss_pred             chh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence            222  233455666666655567888888888888887653221    12233 23344456666667788888877766


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ...-+   +.-+...++|.+..+..+. +..+|..|-.++...-.
T Consensus       475 ~~~~~---~~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  475 QEYFD---QSEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             ccccc---hhhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence            54433   2234567889999988888 88888888777665543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.63  E-value=0.36  Score=51.72  Aligned_cols=188  Identities=14%  Similarity=0.061  Sum_probs=133.8

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009622          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (530)
Q Consensus       161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  240 (530)
                      .+.+..-+.++++.-+..++..+..+..... ........+.+..+++....+.+..+...++.+|..++..-.......
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            3445555566788888888888888776654 112222345566667776678899999999999999998775556666


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch-h
Q 009622          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-Q  319 (530)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~  319 (530)
                      ...+.|.+++-+......++..+..++-.++....       -....+.+...+.+.++.++..+...+.......+. .
T Consensus       334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~  406 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT  406 (815)
T ss_pred             HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence            78888999998888777777766666544443211       114567788899999999999988888777765442 1


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ...-.-.++++.++....+. +.+||..|..+++-+..
T Consensus       407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            11112246788888888888 99999999999888766

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.63  E-value=0.071  Score=54.23  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=105.8

Q ss_pred             cHHHHHHhhCC----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009622          286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       286 ~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      +.|.+.+...+    +++.++..|.-+|..+.+-+.+..     ..-+|.++..+...++|.+|.+|...++.++.....
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            44555555554    577888888888888766444333     245788999998444999999999999998764333


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622          362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll  441 (530)
                      .+.     ..-..|.+-|.+.+..||+.+..++.++...+-      +.-.|-+..+..+|.++|..+...|-..+..+.
T Consensus       968 ~~d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         968 TAD-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             hhH-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence            222     234577888888899999999999999988652      234588889999999999998888777776666


Q ss_pred             hhhh
Q 009622          442 KVGE  445 (530)
Q Consensus       442 ~~~~  445 (530)
                      +...
T Consensus      1037 ~KdN 1040 (1128)
T COG5098        1037 KKDN 1040 (1128)
T ss_pred             hccc
Confidence            5543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.60  E-value=0.25  Score=41.93  Aligned_cols=137  Identities=20%  Similarity=0.181  Sum_probs=94.4

Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHH
Q 009622          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCL  332 (530)
Q Consensus       254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L  332 (530)
                      ...++++..+.-++..+.+.    ...-....+-+.+-..+...+..-...++.++..+..+.++....++ ..|+++.+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            35677888888888777421    12122223334555556666666788889999999888887766666 77999999


Q ss_pred             HHhhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc-Cchh-HHHHHHHHHHHh
Q 009622          333 LNLLS--GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFD-IKKEAAWAISNA  397 (530)
Q Consensus       333 ~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~a~~aL~nl  397 (530)
                      ..++.  .. +..++..++.+|+.-|..  +.++..+...+++.|-++++. ++.. +|..|+-+|+.+
T Consensus        92 ~~~~~~~~~-~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   92 LPLASRKSK-DRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HHHHH-CTS--HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHHhcccC-CHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            99998  55 778888888888766543  445555556788999999954 4555 888888888753

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.58  E-value=0.13  Score=45.35  Aligned_cols=111  Identities=16%  Similarity=0.165  Sum_probs=79.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC--------CCHHHHHHHHHHHHHHh
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIA  145 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~--------~~~~i~~~a~~~L~~l~  145 (530)
                      ....+++.+.+.....  ..+..|+..+...+..-++.+++.|++..|+++|..-        .+..+..+++.||..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4466777787655443  5566666666553233467778888899999887631        23578999999999999


Q ss_pred             cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009622          146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (530)
Q Consensus       146 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~  187 (530)
                      . +......++. .+++..++..|.+++..++..++.+|+.+|
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8 5566666665 688999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.57  E-value=0.02  Score=33.37  Aligned_cols=29  Identities=28%  Similarity=0.434  Sum_probs=25.6

Q ss_pred             chHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ++|.+++++.++ ++.||..|+++|+.++.
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            478999999999 99999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.54  E-value=0.33  Score=47.53  Aligned_cols=141  Identities=16%  Similarity=0.153  Sum_probs=83.5

Q ss_pred             hHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCCchhHHHHHHHHhHhhcCC
Q 009622          244 ALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       244 ~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~~~~~a~~~L~nl~~~~  316 (530)
                      -.+.+-.-+...| ..-+..|+..+..++.........++.    ..+..++.      +.+|.-+..|+..++.++...
T Consensus       211 P~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~  286 (370)
T PF08506_consen  211 PEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG  286 (370)
T ss_dssp             HHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred             HHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence            3444444444333 345667777777777553333222222    22333332      357888899999999998654


Q ss_pred             ch------------hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622          317 DM------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       317 ~~------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      ..            ....+....++|-|. --.+. .|-++..|++.+..+-..-+..  .+  .+++|.++..|.+++.
T Consensus       287 ~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~~--~l--~~~~~~l~~~L~~~~~  360 (370)
T PF08506_consen  287 STTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPKE--QL--LQIFPLLVNHLQSSSY  360 (370)
T ss_dssp             --BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-HH--HH--HHHHHHHHHHTTSS-H
T ss_pred             ccccCCcccccccccHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHHHhCCCCc
Confidence            32            123344555666665 11133 7889999999999997643321  22  2489999999999999


Q ss_pred             hHHHHHHHHH
Q 009622          385 DIKKEAAWAI  394 (530)
Q Consensus       385 ~v~~~a~~aL  394 (530)
                      -|...|+.++
T Consensus       361 vv~tyAA~~i  370 (370)
T PF08506_consen  361 VVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHHH
T ss_pred             chhhhhhhhC
Confidence            9999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.13  Score=51.10  Aligned_cols=151  Identities=22%  Similarity=0.316  Sum_probs=99.9

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC
Q 009622          123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG  201 (530)
Q Consensus       123 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~  201 (530)
                      +++.+.+ +-+|...+..++---.++.       ..|++..|+.. .++.+.++++.|+.+|+-+|.+.+.         
T Consensus       523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            3444444 5666665554443222222       23567777777 5668899999999999999877653         


Q ss_pred             ChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 009622          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  281 (530)
Q Consensus       202 ~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~  281 (530)
                      .+...+++|..+.+..++.....+|.-.|.+...      ..++..|-.++.....-++..|+.+++-+.-...+....-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            5667778887788899999999999888877522      3345566677778888899999988887764332222211


Q ss_pred             HHhCcHHHHHHhhCCC
Q 009622          282 IEAGVFPRLAEFLMHP  297 (530)
Q Consensus       282 ~~~~~i~~L~~lL~~~  297 (530)
                      +. +++..+.+.+...
T Consensus       660 v~-~I~k~f~~vI~~K  674 (926)
T COG5116         660 VK-RIIKKFNRVIVDK  674 (926)
T ss_pred             HH-HHHHHHHHHHhhh
Confidence            21 4556666666544

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.47  E-value=3.7  Score=46.46  Aligned_cols=148  Identities=16%  Similarity=0.176  Sum_probs=94.8

Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009622          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (530)
Q Consensus       285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (530)
                      +++|.|..-|.+.+..+|..|+..+|.+......+.. --...+...++.-+.+. +..||.++.....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7889998889999999999999999999875553321 00123555666666666 889999999999988776655433


Q ss_pred             HHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       365 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                      ..   ++...+..  .+.|++++.....++.-+...   +..-.++.. .+..+.+-+.+....|+..|+..|..+.+.
T Consensus       337 ~~---~~~~~l~~--~~~D~~~rir~~v~i~~~~v~---~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AS---TILLALRE--RDLDEDVRVRTQVVIVACDVM---KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HH---HHHHHHHh--hcCChhhhheeeEEEEEeehh---HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            22   12222222  223444444433322222111   111222233 666777777888999999999999998874

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.34  E-value=0.33  Score=44.27  Aligned_cols=101  Identities=14%  Similarity=0.100  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 009622           89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL  168 (530)
Q Consensus        89 ~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL  168 (530)
                      ....|+..|.-++--. ++....+-+...+..|+++|.....+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus       107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            3455777777776653 344445557888999999996554589999999999999999999999999999999999999


Q ss_pred             CC--CCHHHHHHHHHHHHhhhCCC
Q 009622          169 YS--PSDDVREQAVWALGNIAGDS  190 (530)
Q Consensus       169 ~~--~~~~~~~~a~~~L~nl~~~~  190 (530)
                      ++  .+.+++-.++..|.-+..+.
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            87  56778888888877665443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.28  E-value=4.7  Score=42.44  Aligned_cols=281  Identities=11%  Similarity=0.094  Sum_probs=142.3

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       119 ~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      ..+++++++.++.-++..+++++.-...+-.-..+.+..  ......+.+++.. ..-+.+...+.+|+.+.....+...
T Consensus       529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~  608 (978)
T KOG1993|consen  529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA  608 (978)
T ss_pred             HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            345666766644667777777777666633222222221  2233344445544 3445666777777776643322111


Q ss_pred             hHhhcCChHHHHHhhcCCC-chhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh---hHHHHH--HH--HH
Q 009622          196 LVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD---EVLTDA--CW--AL  267 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~---~v~~~a--~~--~l  267 (530)
                      .. ...++..+-.+-..+. .+-++...+.++.++...-.........-++|.+-....-+.+   -..+++  +|  +|
T Consensus       609 P~-~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L  687 (978)
T KOG1993|consen  609 PY-ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTL  687 (978)
T ss_pred             HH-HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHH
Confidence            10 1112222222222333 4455566678888888765444444444445544433332221   233333  22  33


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHH
Q 009622          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (530)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  347 (530)
                      .|...-.++    +.  +++|.+..++....+.+ ..++.++....--.....-.-...|+.+.+..++.+- ..+-...
T Consensus       688 ~n~~~l~p~----ll--~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dv-r~egl~a  759 (978)
T KOG1993|consen  688 MNSQKLTPE----LL--LLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQA  759 (978)
T ss_pred             hcccccCHH----HH--HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence            443222222    22  56777777776554332 3334444332211111111122347778888887755 4444555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009622          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLV  410 (530)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~  410 (530)
                      .+.++..+...++ ........++++.+..-+-.+  .|.+-..-+.+++.++.. +++....++
T Consensus       760 vLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~-n~~~~msvl  822 (978)
T KOG1993|consen  760 VLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR-NPSLFMSVL  822 (978)
T ss_pred             HHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc-ChHHHHHHH
Confidence            5666666655544 455556678888887765333  577888888888888776 344443333

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.25  E-value=1.6  Score=43.71  Aligned_cols=260  Identities=14%  Similarity=0.128  Sum_probs=145.7

Q ss_pred             HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C
Q 009622           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-P  171 (530)
Q Consensus        93 a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~  171 (530)
                      +-..|..++......+.+..++...+..|+.++.++| +.-|.....+|.++-......+..+.. .+...+.+++.. .
T Consensus       110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~  187 (409)
T PF01603_consen  110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE  187 (409)
T ss_dssp             HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence            4444555554432222333455567889999999999 899999999999887755666655543 345666667654 3


Q ss_pred             CHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHH
Q 009622          172 SDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH  250 (530)
Q Consensus       172 ~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~  250 (530)
                      ...-...++.+++.+..+-. ..+..-.. -....++.+.....-.........++..++..++..    ...++..+++
T Consensus       188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk  262 (409)
T PF01603_consen  188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLK  262 (409)
T ss_dssp             --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHH
Confidence            44455668888888876522 22222111 022334444433334455566667777776654322    2223333333


Q ss_pred             hhcCCChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh---c
Q 009622          251 LIHSNDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE---Y  326 (530)
Q Consensus       251 ll~~~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~---~  326 (530)
                      .=-..++.-..-.+.-+..+...- +.....+ ...++..+...+.+.+..+.+.|+..+.|=     ... .++.   .
T Consensus       263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~-~li~~~~~  335 (409)
T PF01603_consen  263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFL-SLISQNSR  335 (409)
T ss_dssp             HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHH-HHHHCTHH
T ss_pred             hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHH-HHHHhChH
Confidence            333344443344444555555432 2333322 235778888889999999988888765432     122 2222   2


Q ss_pred             CchHHHHHhhcCC---C-chhHHHHHHHHHHHHhcCCHHHHHHH
Q 009622          327 QALPCLLNLLSGN---Y-KKSIKKEACWTVSNITAGNREQIQAV  366 (530)
Q Consensus       327 ~~l~~L~~lL~~~---~-~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (530)
                      .++|.+..-+...   + +..+|..|..++.-+..-++.....+
T Consensus       336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~  379 (409)
T PF01603_consen  336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC  379 (409)
T ss_dssp             HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            3677777776441   1 57899999999999988777655443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=95.24  E-value=3.5  Score=40.70  Aligned_cols=267  Identities=13%  Similarity=0.059  Sum_probs=137.5

Q ss_pred             CHHHHHHHHHHHHhhhCCCchhhhhHhhc---CChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009622          172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ---GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (530)
Q Consensus       172 ~~~~~~~a~~~L~nl~~~~~~~~~~i~~~---~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~  247 (530)
                      +.++..+|+.+|+.+..+.. ....+-..   -++...+..+. .+.+..+....+|+|+.=-.............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            67899999999999876543 22221111   13344444442 344677888888887653332211112222223333


Q ss_pred             HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc--CCc-hhhH--
Q 009622          248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT--GDD-MQTQ--  321 (530)
Q Consensus       248 L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~--~~~-~~~~--  321 (530)
                      +..+-+ -+...+....+.++.++....+.....-. ...++.++..+-+....++..|..++..+..  +.. ....  
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~  216 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV  216 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            333332 34567788888899888876654322111 1367888887777777777776655544432  111 1111  


Q ss_pred             -HHhh----cC-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009622          322 -CVIE----YQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       322 -~~~~----~~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                       ..++    .+     +.+.|..++.+. +.....--.|...-+..+++. .....+ ...+...-..+.++++.+|..|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A  294 (372)
T PF12231_consen  217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA  294 (372)
T ss_pred             HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence             1112    12     344466777663 222222234443333333221 101111 2244444556778899999999


Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHcCChHHHHhccCCC-Ch----HHHHHHHHHHHHHHhh
Q 009622          391 AWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVCP-DP----RIVTVCLEGLENILKV  443 (530)
Q Consensus       391 ~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~-~~----~v~~~al~~l~~ll~~  443 (530)
                      ..+-..++...  +.......+.. +..++...++.+ ..    .+...++..+.+++-+
T Consensus       295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            98888777522  11111121111 233444444322 22    5667777777777643

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.10  E-value=1.9  Score=40.13  Aligned_cols=204  Identities=12%  Similarity=0.106  Sum_probs=131.4

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc--CChHHHHHhhcCCC-chhHHHHHHHHhhhh
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQP-KLSMLRNATWTLSNF  229 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~L  229 (530)
                      ..+.++|.+..|++.+..-+.+.+..++.+..|+-...-..|....+.  .-...+-.++.... .+++.-.+...+...
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc  152 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC  152 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            356678999999999988888888888888888864333333222211  01222223332222 244544444444444


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhhCCCCchhHHHH
Q 009622          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----i~~L~~lL~~~~~~~~~~a  305 (530)
                      .+...-.........+......++.+.=++...|..++..+.......+..+.....    .+.--.++.+++.-++..+
T Consensus       153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs  232 (342)
T KOG1566|consen  153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS  232 (342)
T ss_pred             HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence            444333333334555556666666677788888888888877555444444444332    3445667888999999999


Q ss_pred             HHHHhHhhcCCc---hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          306 LRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       306 ~~~L~nl~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      +..+|.+.-+.+   ...+++-...-+..++.+|+.+ ...++-+|..+.--..+
T Consensus       233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA  286 (342)
T KOG1566|consen  233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA  286 (342)
T ss_pred             HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence            999999976543   2344444557788999999998 88999999888777766

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.09  E-value=1.3  Score=43.50  Aligned_cols=275  Identities=18%  Similarity=0.128  Sum_probs=139.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHhhhCCCchhhh
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQA-VWALGNIAGDSPRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a-~~~L~nl~~~~~~~~~  195 (530)
                      +..+++=|.+.....+|..++--|+.-+. +++.+..+..+|.+..+++.+.. ++..+...+ +.++.-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            56667666654456889999988888888 79999999999999999999955 333244334 334444444443 334


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc---------CCChhHHHHHHHH
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---------SNDDEVLTDACWA  266 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~  266 (530)
                      .+...+....+++++.-...........      ....... ..........+...+.         .....-+.-++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~l-sk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNL-SKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hhhhhhh-hHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            4445555555567663000000000000      0000000 0000111111111110         0011112222223


Q ss_pred             HHHhc--------------cCChHHHHHHHHhCcHHHHHHhhCC----C------------CchhHHHHHHHHhHhhcCC
Q 009622          267 LSYLS--------------DGTNDKIQAVIEAGVFPRLAEFLMH----P------------SPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       267 l~~l~--------------~~~~~~~~~~~~~~~i~~L~~lL~~----~------------~~~~~~~a~~~L~nl~~~~  316 (530)
                      +-.++              ...+.....+...|++..++.++..    .            +......++++|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            22221              1111122335556778888888751    1            1124566788888887766


Q ss_pred             chhhHHHhh--cCchHHHHHhh-cCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-----------
Q 009622          317 DMQTQCVIE--YQALPCLLNLL-SGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-----------  380 (530)
Q Consensus       317 ~~~~~~~~~--~~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-----------  380 (530)
                      .......+.  .+.++.+...+ ...  ....+...++.++.|++-+++..+..+...++...+..+..           
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            655545543  23333333332 221  03344567889999999888777766665443322221111           


Q ss_pred             ---cCchhHHHHHHHHHHHhhcCC
Q 009622          381 ---NAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       381 ---~~~~~v~~~a~~aL~nl~~~~  401 (530)
                         ....+...-++.++.|++...
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             ccccccchHHHHHHHhHHHheeeC
Confidence               112456666777777777653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.97  E-value=11  Score=44.85  Aligned_cols=264  Identities=13%  Similarity=0.070  Sum_probs=140.5

Q ss_pred             CCChHHHHHHHHHHHHhhcCCC--CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009622           84 SNDSGVQYECTTQFRKLLSIER--SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~--~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i  161 (530)
                      +.+..+...|+..|++++...-  .+....-.+..++..|..++.+..+.+++...+.|+.++......    -+.+| =
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSG-W 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSG-W 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcC-c
Confidence            3467788899999988765421  111111234456788888777665689999999999998873322    22334 3


Q ss_pred             HHHHHhh----CCCCHHHHHHHHHHHHhhhCCCchh-----hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh---
Q 009622          162 PIFVKLL----YSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF---  229 (530)
Q Consensus       162 ~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~~~~-----~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L---  229 (530)
                      +.+..++    ...++.+.+.|..++..|+.+.-..     ...+  ..++..+........+.++--.|+..|+++   
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            3344444    3467888888998888876542110     0111  113344444443333344444555445433   


Q ss_pred             -ccCC----------C-------------CC------C---hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---
Q 009622          230 -CRGK----------P-------------QP------P---FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---  273 (530)
Q Consensus       230 -~~~~----------~-------------~~------~---~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---  273 (530)
                       +...          .             ..      .   ....-.++..|..+...+..+|+..|+.+|..+...   
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence             1110          0             00      0   011223334445555667899999999988776532   


Q ss_pred             --ChHHHHHHHHhCcHHHHHHhhCCC-------------------C-----c--hhHHHHHHHHhHhhcCCchhhHHHhh
Q 009622          274 --TNDKIQAVIEAGVFPRLAEFLMHP-------------------S-----P--SVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       274 --~~~~~~~~~~~~~i~~L~~lL~~~-------------------~-----~--~~~~~a~~~L~nl~~~~~~~~~~~~~  325 (530)
                        +++.-..++. +++-.++..+++.                   +     |  .....|++.+..+....-..... +-
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L 1458 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LL 1458 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence              2222233333 4555555544321                   0     1  12233444444443321111111 12


Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      .+++..|..++..+ +..+-+.++.+|.++..
T Consensus      1459 ~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1459 KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            35556666666666 77888888888888876

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.85  E-value=1.1  Score=48.29  Aligned_cols=186  Identities=16%  Similarity=0.118  Sum_probs=129.1

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +.+-..+.+.++..+.+|+..+...++...  ........|.+-.++.....+.+-.+...|+.+|..|+..........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            334445668999999999999999987642  111111245555566555444447888999999999998654432222


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-
Q 009622          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-  234 (530)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-  234 (530)
                      . .++.+.|+..+......+++.+..++-.++...+.       ....+.++..+ .+.++.+...+...+........ 
T Consensus       334 ~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  334 A-KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             H-HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence            2 36789999999888888888887777766653321       12456667777 78888888876666665555442 


Q ss_pred             -CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009622          235 -QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       235 -~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                       .........++|.++....+.+.+|+..+..+++-+..
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence             23345568889999999999999999999988877653

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.70  E-value=3.4  Score=37.78  Aligned_cols=202  Identities=21%  Similarity=0.167  Sum_probs=118.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhH
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i  197 (530)
                      ++.|+.-+....++..+...+.+|..++.....+...     ++..|..+...+....+..+...+..+....+..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            4455553444445999999999999999954233222     24566666776767676677777777765554211   


Q ss_pred             hhcCChHHHHHhh---------cCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHH
Q 009622          198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL  267 (530)
Q Consensus       198 ~~~~~i~~Ll~ll---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l  267 (530)
                         +.+..++..+         ..+...+.......++..+|...|.    ....+++.+..++ +..++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               3444444441         1122344555556788888888765    4566778888888 778888899999999


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCc-hhhHHHhhcCchHHHHHhhcCC
Q 009622          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGN  339 (530)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~  339 (530)
                      ..++...--.+.     .....+.+-++.+ .+.+....+..++.+..+.- ..........++..+.++..+.
T Consensus       147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            999843221111     2234444444443 33444444444444333221 1112234556777777777766

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.63  E-value=2.9  Score=41.21  Aligned_cols=145  Identities=13%  Similarity=0.169  Sum_probs=105.3

Q ss_pred             HHHHHHHHhHhhc---CCchhhHHHhh-cCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHH
Q 009622          302 LIPALRTVGNIVT---GDDMQTQCVIE-YQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL  375 (530)
Q Consensus       302 ~~~a~~~L~nl~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  375 (530)
                      .+..++++..+..   +.......+++ ..++..|..++.+..  .+.+-..|+.+++.+....|.....+.+.|+++.+
T Consensus        77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~  156 (379)
T PF06025_consen   77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF  156 (379)
T ss_pred             HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence            3445556666655   33344455667 677888888888763  46788899999999998888888899999999999


Q ss_pred             HHHHh-cC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh-------HHHHHHHHHHHHHHhhh
Q 009622          376 VALLE-NA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP-------RIVTVCLEGLENILKVG  444 (530)
Q Consensus       376 ~~ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~-------~v~~~al~~l~~ll~~~  444 (530)
                      ++.+. .+   +.++-...-.+|..++.  +....+.+.+.+.++.+.+++.+++.       ++....-.++..|+++.
T Consensus       157 L~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~  234 (379)
T PF06025_consen  157 LDAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH  234 (379)
T ss_pred             HHHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence            99988 43   56777777778888888  55888898999999999998876432       23333444566666666


Q ss_pred             hhhh
Q 009622          445 EAEK  448 (530)
Q Consensus       445 ~~~~  448 (530)
                      +..+
T Consensus       235 p~Lk  238 (379)
T PF06025_consen  235 PSLK  238 (379)
T ss_pred             HHHH
Confidence            6543

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.61  E-value=5.1  Score=39.62  Aligned_cols=193  Identities=11%  Similarity=0.047  Sum_probs=113.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC----CH--HHHHHHHHHHHHHh
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED----YP--QLQFEAAWALTNIA  145 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~--~~~~~~~g~v~~Lv~ll~~~~----~~--~i~~~a~~~L~~l~  145 (530)
                      +......+....+.+.++.|+-...++..+.+-..  .+.+.+.-+.+.+-+++.+.+    .|  -.+.-++.+|+..|
T Consensus        12 a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC   91 (698)
T KOG2611|consen   12 ALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC   91 (698)
T ss_pred             chhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh
Confidence            33456667777788899999999999988754222  344677767888888887643    22  23455666777777


Q ss_pred             cCChhh--HHHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCch
Q 009622          146 SGTSEH--TKVVIDHGAVPIFVKLLYS-PS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL  216 (530)
Q Consensus       146 ~~~~~~--~~~~~~~g~i~~L~~lL~~-~~------~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~  216 (530)
                      . .++.  ...++  +.||.|+.+++. .+      ..+.+.+-.+|..+++..+. ...++..|.++.+.++-.-..-.
T Consensus        92 ~-~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~  167 (698)
T KOG2611|consen   92 R-VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGS  167 (698)
T ss_pred             C-ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCc
Confidence            7 3332  22233  458999998865 22      23778888899999988664 45667889999998776322111


Q ss_pred             hHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 009622          217 SMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (530)
Q Consensus       217 ~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l  270 (530)
                      .-..-++.++.-+...-  -.........++..+..=+...+.......|..|..+
T Consensus       168 ~d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  168 HDMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             hhHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            11111222221111111  1111222222344444444445566667777777744

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.21  Score=46.11  Aligned_cols=144  Identities=11%  Similarity=0.190  Sum_probs=98.7

Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009622          287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV  366 (530)
Q Consensus       287 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (530)
                      +...+..|.+.+|.....++..+..++...++.....+. .++-.+++-+++. ...|-+.||.+++.++..-...+...
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677788999999999999999998877654433332 3555666667777 88899999999999987544444442


Q ss_pred             HHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622          367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       367 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll  441 (530)
                      .+ +.+-.|..--..++.-|+..|-.+|..++.+..+..        ++..|...+...++.++..+.-++.+..
T Consensus       168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            22 222222221222245689999999999999876542        5677777788888888777766555444

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.54  E-value=1.2  Score=46.20  Aligned_cols=138  Identities=14%  Similarity=0.175  Sum_probs=95.7

Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCC
Q 009622          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~  316 (530)
                      ......++|.|...+++.+..+++.++..+..+++.-+.   ..++..++|+|..+ +.+.+..++..++-|++.++...
T Consensus       384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l  460 (700)
T KOG2137|consen  384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL  460 (700)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence            344577889888888899999999999999888765442   25566788888776 34567889999999999988322


Q ss_pred             chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      +..  .+  ...+..+....... ++.+......+..++....... ..++...++|.++.+...+..
T Consensus       461 D~~--~v--~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L  522 (700)
T KOG2137|consen  461 DKA--AV--LDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL  522 (700)
T ss_pred             HHH--Hh--HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence            211  11  12344555555566 8888888777777776633222 345566789999888776643

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.53  E-value=0.9  Score=39.86  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=95.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      -++.+++...+++..++..|+..+..++..+=..|.+      .+|.++.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            4688888888999999999999999888764334443      5899999999988 99999999999999886555444


Q ss_pred             HHHhCCChHHHHHh---hCCCCH-HH---HHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC-------CchhHH
Q 009622          154 VVIDHGAVPIFVKL---LYSPSD-DV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-------PKLSML  219 (530)
Q Consensus       154 ~~~~~g~i~~L~~l---L~~~~~-~~---~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~-------~~~~~~  219 (530)
                      .-...| +..-..+   +..+.. ..   ....+..+..+...+...|..     ++..+++.+...       ....-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHH
Confidence            433333 2222222   221111 11   455566666776655555555     455666666322       134445


Q ss_pred             HHHHHHhhhhccCC
Q 009622          220 RNATWTLSNFCRGK  233 (530)
Q Consensus       220 ~~a~~~L~~L~~~~  233 (530)
                      ...+++..||+.-+
T Consensus       156 ~~~~Fla~nLA~l~  169 (187)
T PF12830_consen  156 DFLLFLAENLATLP  169 (187)
T ss_pred             HHHHHHHHHHhcCC
Confidence            56666666666553

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.35  E-value=4.2  Score=48.02  Aligned_cols=270  Identities=10%  Similarity=0.066  Sum_probs=141.5

Q ss_pred             CCHHHHHHHHHHHHhhhCCC---chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009622          171 PSDDVREQAVWALGNIAGDS---PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (530)
Q Consensus       171 ~~~~~~~~a~~~L~nl~~~~---~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~  247 (530)
                      ++..+...|+..|..++..-   ++....-.+..++.++..++....+.++++.++.|+.++.......-..-...++..
T Consensus      1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076       1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred             cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence            45566667777666666321   111111223457788888887777889999999999988765422111222333444


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhccCChHHHH----HHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhc----CCc-
Q 009622          248 LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ----AVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVT----GDD-  317 (530)
Q Consensus       248 L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~----~~~-  317 (530)
                      +.......++.+...+..++..+....-..+.    ..+ ..++..+..+.... +..+-..|+..|.+++.    +.- 
T Consensus      1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~ 1307 (1780)
T PLN03076       1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLG 1307 (1780)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccc
Confidence            44344455677777777777665532111000    000 13344444444433 34455566666654421    000 


Q ss_pred             ----------------------hhhH-----HHhhcCchHHHH---HhhcCCCchhHHHHHHHHHHHHhcC-----CHHH
Q 009622          318 ----------------------MQTQ-----CVIEYQALPCLL---NLLSGNYKKSIKKEACWTVSNITAG-----NREQ  362 (530)
Q Consensus       318 ----------------------~~~~-----~~~~~~~l~~L~---~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~~  362 (530)
                                            ....     .......+|.|.   .+..+. +++||..|..+|-.+...     +++.
T Consensus      1308 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~~~ 1386 (1780)
T PLN03076       1308 SSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSLPL 1386 (1780)
T ss_pred             ccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence                                  0000     000112334333   334555 899999999998887651     2333


Q ss_pred             HHHHHHhCcHHHHHHHHhcC-----------------------chhHHHHHHHHHHHhhcCCCHHHHHHHH--HcCChHH
Q 009622          363 IQAVIEANIIGPLVALLENA-----------------------EFDIKKEAAWAISNATSGGTHEQIKFLV--IQGCIKP  417 (530)
Q Consensus       363 ~~~l~~~~~i~~L~~ll~~~-----------------------~~~v~~~a~~aL~nl~~~~~~~~~~~l~--~~~~l~~  417 (530)
                      ...+++ +++.++++.+...                       +..+...+..||.+++.--. .+...+-  =.+++..
T Consensus      1387 W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft-~fFd~L~~~L~~~l~l 1464 (1780)
T PLN03076       1387 WERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV-KFYPTVNPLLKKVLML 1464 (1780)
T ss_pred             HHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            333333 5666666655321                       01123333334444333110 2222221  2256667


Q ss_pred             HHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          418 LCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       418 L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      |..++..++..+...+..+|.+++..+
T Consensus      1465 l~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1465 LVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            777778888899999999999987544

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.21  E-value=5.7  Score=38.45  Aligned_cols=157  Identities=17%  Similarity=0.138  Sum_probs=110.4

Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHhHhhc-CCchhhHHHhhc-C-chHHHHHhhcCC---Cc---------hhHHHHHHHH
Q 009622          287 FPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEY-Q-ALPCLLNLLSGN---YK---------KSIKKEACWT  351 (530)
Q Consensus       287 i~~L~~lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~---~~---------~~v~~~a~~~  351 (530)
                      +..+...|+.....+..++++.|..++. ........++.. + -.+.+.+++...   ..         +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788889999988899999999999998 444555556532 1 233444444321   01         2788887765


Q ss_pred             HHHHh-cCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---CHHHHHHHHHcCChHHHHhccCCCC
Q 009622          352 VSNIT-AGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGG---THEQIKFLVIQGCIKPLCDLLVCPD  426 (530)
Q Consensus       352 L~nl~-~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~l~~L~~lL~~~~  426 (530)
                      +..+. .+++.....++. .+.+..+.+-|..+++++....+.+|..-+...   .....-.+....++..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            55544 477777766664 567888999898888999999999998644332   2333334456667888999888777


Q ss_pred             h----HHHHHHHHHHHHHHhh
Q 009622          427 P----RIVTVCLEGLENILKV  443 (530)
Q Consensus       427 ~----~v~~~al~~l~~ll~~  443 (530)
                      +    .+...+-+.|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    7888888888888753

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.18  E-value=4.9  Score=37.54  Aligned_cols=209  Identities=14%  Similarity=0.109  Sum_probs=143.2

Q ss_pred             HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc---hhhHHHh--hcCchHHHHHhhcCCCc-hhHHHHHHHH
Q 009622          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD---MQTQCVI--EYQALPCLLNLLSGNYK-KSIKKEACWT  351 (530)
Q Consensus       278 ~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~---~~~~~~~--~~~~l~~L~~lL~~~~~-~~v~~~a~~~  351 (530)
                      .+.+.++|++..++..+...+...+..++.+..++....-   ..+...+  ...++..|+.-   ..+ +++--.+...
T Consensus        72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~m  148 (342)
T KOG1566|consen   72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNM  148 (342)
T ss_pred             HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHH
Confidence            3557788999999999999999999999999999865332   1111122  22344444433   212 3443333333


Q ss_pred             HHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CC-hHHHHhccCCCChH
Q 009622          352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--GC-IKPLCDLLVCPDPR  428 (530)
Q Consensus       352 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~-l~~L~~lL~~~~~~  428 (530)
                      +..+..+ +.....+....-+......++.+..++...|..++..+......-..+.+..+  .. .+....++.+++.-
T Consensus       149 lrEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv  227 (342)
T KOG1566|consen  149 LRECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYV  227 (342)
T ss_pred             HHHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence            4333333 44455666777788888899999999999999999988876543344444432  11 44466788899999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 009622          429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       429 v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~  498 (530)
                      +...++.++..++...++...        -...+.+...+..+..|+..+...++-.|..+...|.....
T Consensus       228 tkrqs~kllg~llldr~N~~~--------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAV--------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHH--------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            999999999999876665443        25556666678888999999999999999998887655433

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.18  E-value=4.5  Score=40.43  Aligned_cols=233  Identities=13%  Similarity=0.073  Sum_probs=130.0

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       155 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      .++...+..|+.++.++++.-|+....+|.++-+.....|..+.. .+...+.+.+...........++..++.+..+-.
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            344456788999999999999999999999987666556655433 3556666777555666777778888888887753


Q ss_pred             CC-ChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          235 QP-PFDQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       235 ~~-~~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                      .+ ......-....++.+..... .........++......++.....+     +..++..=-..+..-...-+.-+..+
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~i  282 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEI  282 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHH
Confidence            22 23333333445556655543 2223334444444444444333322     22233322223333333445555555


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc-----Cch
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN-----AEF  384 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~-----~~~  384 (530)
                      ....+...-.-+...+...+...+.+. +..|-+.|+....|      +.+-.++.   ..++|.++..+..     -+.
T Consensus       283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~  355 (409)
T PF01603_consen  283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN------EYFLSLISQNSRVILPIIFPALYRNSKNHWNQ  355 (409)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence            553332221222335677788888888 88888877765433      22222222   2256666666533     267


Q ss_pred             hHHHHHHHHHHHhhcC
Q 009622          385 DIKKEAAWAISNATSG  400 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~  400 (530)
                      .|+..|..++.-+...
T Consensus       356 ~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  356 TVRNLAQNVLKILMEM  371 (409)
T ss_dssp             THHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8999888888887775

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.14  E-value=3.9  Score=42.44  Aligned_cols=102  Identities=19%  Similarity=0.327  Sum_probs=74.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+.-+++...+++..+++..+..|+.+...  ...++..+-.++...+..-+.+.. |.+|.+|+.+|+.+-.+..+.  
T Consensus        86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   86 TFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC--
Confidence            455666677788999999999999988653  455666666677777777777766 899999999999988533211  


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHH
Q 009622          154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWAL  183 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L  183 (530)
                         +..++..+..+++. +++++|..++..|
T Consensus       161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             ---cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence               12456777888866 7899999866544

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.13  E-value=4.5  Score=36.94  Aligned_cols=202  Identities=18%  Similarity=0.221  Sum_probs=113.5

Q ss_pred             hHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChh
Q 009622          161 VPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD  239 (530)
Q Consensus       161 i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  239 (530)
                      ++.|+. .-+..+++.....+.+|..++.+...+...     ++..+..+. ..+.......+...+..+-... ...+ 
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~-~r~f-   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAN-DRHF-   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhC-chHH-
Confidence            344444 334578899999999999999776212222     344455555 4444444444555555554442 2222 


Q ss_pred             hhhchHHHHHHh--------hc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHH
Q 009622          240 QVSPALPALAHL--------IH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRT  308 (530)
Q Consensus       240 ~~~~~l~~L~~l--------l~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~  308 (530)
                         +.+..++..        ..  +...+.......++..++...++.     ...+++.+..++ .+.++..+..++.+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence               233322222        01  112344455556777777666652     235678888888 78888899999999


Q ss_pred             HhHhhcCCchhhHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHhCcHHHHHHHHhcCch
Q 009622          309 VGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      +..++...      +++ ......+.+-+..+..+.+.+..|..+..+..+.- ..-.......++..+.+...+.+.
T Consensus       146 l~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  146 LAPLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            99998322      121 13345555556555567777766666555554311 111222344567777776666553

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.10  E-value=7.7  Score=39.48  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=79.7

Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009622          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~  317 (530)
                      ...+.+.+..++..+.++|..|+..++..|..++..-.+ +...+-.+++..|.+-+-+.++.+|..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            456678888888888999999999999999888755332 3445555888888888888899999999999988753222


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009622          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      ..-     ..+...|..+++++++.+||+.|..-+
T Consensus       165 nee-----n~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            111     123446777777766788988765443

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.02  E-value=6.3  Score=38.19  Aligned_cols=159  Identities=18%  Similarity=0.161  Sum_probs=116.7

Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHh-Cc-HHHHHHHHhcC-----c--------hhHHHHHHH
Q 009622          329 LPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEA-NI-IGPLVALLENA-----E--------FDIKKEAAW  392 (530)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-i~~L~~ll~~~-----~--------~~v~~~a~~  392 (530)
                      ++.+...|... .+.+...+...|..++. ........+... ++ .+.+-+++...     +        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            77888889888 78888899999999998 666666666642 11 33444444211     1        289999999


Q ss_pred             HHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009622          393 AISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI  471 (530)
Q Consensus       393 aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  471 (530)
                      .+..+...+++.....+++ .+.+..+..-+..++++++..++.++..-+-..+.....       .+..+-....+.+|
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~-------~K~~~fn~~~L~~l  209 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS-------TKCKLFNEWTLSQL  209 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh-------hhhhhcCHHHHHHH
Confidence            9999999888888888775 467888999998988899999999988644333333221       23333345578888


Q ss_pred             HHHhcCCCH----HHHHHHHHHHHHhCC
Q 009622          472 ESLQTHDNA----EIYEKSVKLLETYWL  495 (530)
Q Consensus       472 ~~l~~~~~~----~v~~~a~~il~~~~~  495 (530)
                      ..|-...++    .+.+.+...+..+..
T Consensus       210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  210 ASLYSRDGEDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             HHHhcccCCcccchHHHHHHHHHHHHhc
Confidence            888888888    999999999998875

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.94  E-value=4.8  Score=41.95  Aligned_cols=174  Identities=15%  Similarity=0.116  Sum_probs=106.8

Q ss_pred             hhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009622          240 QVSPALPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~  318 (530)
                      ....++|.|...++..+ .++..-.+.-+..|...-+   ..-+...+++.|...+++.+..++..++..+...+..-+ 
T Consensus       346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-  421 (700)
T KOG2137|consen  346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-  421 (700)
T ss_pred             hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-
Confidence            34566777777776433 2222221111111111111   112334788888888999999999999999999887555 


Q ss_pred             hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                        -..+..-++|.+..+........++..++-+++-+..    .++...-...+..+.+..+..++.+......+..++.
T Consensus       422 --~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~  495 (700)
T KOG2137|consen  422 --VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA  495 (700)
T ss_pred             --HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence              2345667888888886555477899999999888862    1111111124455556666778999888888888877


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622          399 SGGTHEQIKFLVIQGCIKPLCDLLVCP  425 (530)
Q Consensus       399 ~~~~~~~~~~l~~~~~l~~L~~lL~~~  425 (530)
                      ......  +.+....+++.+..+...+
T Consensus       496 ~~~~~g--~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  496 LIIYSG--VEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             hhcccc--eeeehhhhhhhhhhhhhcc
Confidence            643211  2334456677666665544

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.37  E-value=0.57  Score=50.00  Aligned_cols=136  Identities=20%  Similarity=0.238  Sum_probs=81.3

Q ss_pred             chHHHHHHhhcC----CChhHHHHHHHHHHHhccC---Ch------HHHHHHHHhCcHHHHHHhhC----CCCchhHHHH
Q 009622          243 PALPALAHLIHS----NDDEVLTDACWALSYLSDG---TN------DKIQAVIEAGVFPRLAEFLM----HPSPSVLIPA  305 (530)
Q Consensus       243 ~~l~~L~~ll~~----~d~~v~~~a~~~l~~l~~~---~~------~~~~~~~~~~~i~~L~~lL~----~~~~~~~~~a  305 (530)
                      ..+..+..++.+    .++.+...++.+++.+...   ..      ......+...+++.+...+.    ..+...+..+
T Consensus       431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  510 (618)
T PF01347_consen  431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY  510 (618)
T ss_dssp             HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence            344445555543    3456777777777776522   10      00011122245566665554    4566778889


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-
Q 009622          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-  382 (530)
Q Consensus       306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-  382 (530)
                      +++|||+..  +         ..++.|..++...  ....+|..|+|++..++...++.        +.+.|+.++.+. 
T Consensus       511 LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~  571 (618)
T PF01347_consen  511 LKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTT  571 (618)
T ss_dssp             HHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TT
T ss_pred             HHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCC
Confidence            999999974  1         3466777777654  26789999999999997766654        445677777654 


Q ss_pred             -chhHHHHHHHHHHHh
Q 009622          383 -EFDIKKEAAWAISNA  397 (530)
Q Consensus       383 -~~~v~~~a~~aL~nl  397 (530)
                       ++++|..|..+|...
T Consensus       572 e~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  572 EDPEVRIAAYLILMRC  587 (618)
T ss_dssp             S-HHHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHhc
Confidence             688999998777763

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.28  E-value=0.55  Score=33.64  Aligned_cols=67  Identities=16%  Similarity=0.102  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009622           90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (530)
Q Consensus        90 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g  159 (530)
                      ...|++++.++.+.  ..-...+.+.++++.++++....+...+|-.|.++|+-++. +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            45789999999875  45566666789999999999876668999999999999998 677766665544

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.26  E-value=1.2  Score=41.43  Aligned_cols=147  Identities=16%  Similarity=0.162  Sum_probs=103.7

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009622          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  321 (530)
                      ...+...+..|.+.|.....+.+..+..++....+.....+. .++-.+++-+++....+-..||.+++.|.+.-.....
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677788888889999999999998776655554444 5667788888888888999999999999875544333


Q ss_pred             HHhhcCchHHHHHhh-cCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622          322 CVIEYQALPCLLNLL-SGN--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                      ..     +..++..| ...  .+.-++..|-.+|..+..+-..+       .+++.|+..+.+..+.++..++.++.++.
T Consensus       166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            32     22333333 221  14568888889998887643222       36777888888889999999988888776


Q ss_pred             cCC
Q 009622          399 SGG  401 (530)
Q Consensus       399 ~~~  401 (530)
                      ...
T Consensus       234 ~rl  236 (334)
T KOG2933|consen  234 IRL  236 (334)
T ss_pred             eec
Confidence            543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.25  E-value=2.7  Score=43.45  Aligned_cols=231  Identities=13%  Similarity=0.069  Sum_probs=133.1

Q ss_pred             hhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC---CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--
Q 009622          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--  272 (530)
Q Consensus       198 ~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~--  272 (530)
                      ++.|+++.++.....-+...+....=.+|+.+....   .........-.-|.|...|+..+..|+.+|+..+.++--  
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            456677776665433333333333444455554432   111122223344667778888999999999999988752  


Q ss_pred             CCh---HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH----hhcCCCchhHH
Q 009622          273 GTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN----LLSGNYKKSIK  345 (530)
Q Consensus       273 ~~~---~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~----lL~~~~~~~v~  345 (530)
                      +++   +....+++ .-...+.++|.++-+.+|..|..-++.+.+.-    ..++...++..++.    -+..+...+||
T Consensus       206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR  280 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVR  280 (1005)
T ss_pred             CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence            222   22333444 34578999999999999999988888776422    23344333333333    33333256788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009622          346 KEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP  425 (530)
Q Consensus       346 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~  425 (530)
                      ......|..++.....  -.+++ -++|.|-..|.+....||-.+...|..+-..-    ...+..---.+.++.-|..+
T Consensus       281 ~svf~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr----a~~f~~I~~~d~~l~~L~~d  353 (1005)
T KOG1949|consen  281 CSVFKGLPMILDNPLS--HPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR----AAKFWKICPMDHILVRLETD  353 (1005)
T ss_pred             hhHhcCcHHHHcCccc--hhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh----hhhhhccccHHHHHHHHhcc
Confidence            8888888877664221  12222 24567777778888899998888888774421    11112222344555556555


Q ss_pred             ChHHHHHHHHHHHHH
Q 009622          426 DPRIVTVCLEGLENI  440 (530)
Q Consensus       426 ~~~v~~~al~~l~~l  440 (530)
                      +..+....+..|.+.
T Consensus       354 ~~~v~rr~~~li~~s  368 (1005)
T KOG1949|consen  354 SRPVSRRLVSLIFNS  368 (1005)
T ss_pred             ccHHHHHHHHHHHHh
Confidence            555554444444333

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=93.09  E-value=6.8  Score=36.40  Aligned_cols=218  Identities=16%  Similarity=0.140  Sum_probs=121.4

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHh
Q 009622          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVL  198 (530)
Q Consensus       121 Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~  198 (530)
                      |=..|.+++ +.+|..|+.+|+.+...-+...   ....-+..|+.++.+  .+......++.++..|.....-....  
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--   77 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--   77 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence            445677877 8999999999999887544221   112224555555433  45555555677777776332211111  


Q ss_pred             hcCChHHHHHhhc-CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChH
Q 009622          199 SQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       199 ~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~  276 (530)
                      ...++..+.+... +......+..+...+..+...............+..+++.+..+ ||.-+.-+...+..+...-+ 
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-  156 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-  156 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence            1112333333221 12245566677777777766542222223355667777777654 77766666666655543322 


Q ss_pred             HHHHHHHhCcHHHHHHhhCC---------C-Cc--hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhH
Q 009622          277 KIQAVIEAGVFPRLAEFLMH---------P-SP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (530)
Q Consensus       277 ~~~~~~~~~~i~~L~~lL~~---------~-~~--~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  344 (530)
                           . ....+.+.+.+..         + ++  -.+..--..|.+....++...     .-.+|.|++-|.++ .+.+
T Consensus       157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~  224 (262)
T PF14500_consen  157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV  224 (262)
T ss_pred             -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence                 0 1233334444321         1 21  133334444544444444332     34689999999998 8889


Q ss_pred             HHHHHHHHHHHhc
Q 009622          345 KKEACWTVSNITA  357 (530)
Q Consensus       345 ~~~a~~~L~nl~~  357 (530)
                      +..++.+|..++.
T Consensus       225 K~D~L~tL~~c~~  237 (262)
T PF14500_consen  225 KLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988876

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.97  E-value=1.3  Score=38.86  Aligned_cols=124  Identities=13%  Similarity=0.093  Sum_probs=78.8

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHH---------------HHhCcHHHHHHhhCC------CCchhHHHHHHHHhHhhc
Q 009622          256 DDEVLTDACWALSYLSDGTNDKIQAV---------------IEAGVFPRLAEFLMH------PSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       256 d~~v~~~a~~~l~~l~~~~~~~~~~~---------------~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~  314 (530)
                      +......++..|+|++.........+               .+...+..|+..+..      ....-......++.|++.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            33445566777788776544322111               112356677777655      234456677888999987


Q ss_pred             CCchhhHHHhhc--Cc--hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHHHHHHhc
Q 009622          315 GDDMQTQCVIEY--QA--LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPLVALLEN  381 (530)
Q Consensus       315 ~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~  381 (530)
                       .+..++.+++.  +.  +..|+..+.+. +..-|.-++.+|.|+|.....+...+-.  .+++|.|+--+..
T Consensus        88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG  158 (192)
T PF04063_consen   88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG  158 (192)
T ss_pred             -CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence             45556666643  34  78888888888 7777788899999999876665333332  3566666665543

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.88  E-value=7.6  Score=40.12  Aligned_cols=290  Identities=13%  Similarity=0.157  Sum_probs=150.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..+=+.+.++++.+.--|+-.+.-..++-.++ .     .-++..|.+.+.+++ ..++..|+.-|+-.-.++  +++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            3444445556666666655554444222221111 1     113455677777777 677887777776655533  233


Q ss_pred             HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          154 VVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      .+.     ..|..++.+.  ..++.-.+..+|+.+..++-  -.. +...+++.++..-.........+...-.|.-+.-
T Consensus       487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGsc--n~d-vts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSC--NED-VTSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecC--ChH-HHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            332     1455556553  34577777777777764332  111 1122455555543222234444444444544444


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---chhHHHHHHH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIPALRT  308 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~~~~~a~~~  308 (530)
                      +..        ..+...+..+..-...+...+-..+..++.....+.-.+-+    ..+..+.....   ......|+.-
T Consensus       559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg  626 (878)
T KOG2005|consen  559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG  626 (878)
T ss_pred             ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence            332        11222222222222223222222222222111111100000    22222222211   1223355555


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      ++-++.+.+-..+.     .+..+-.+|..+ ++.+|+..-.+++-++..+|..       +++..|-+...+.|.++..
T Consensus       627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~  693 (878)
T KOG2005|consen  627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM  693 (878)
T ss_pred             hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence            66666655543333     356777888888 9999999999999998877653       5788899999999999999


Q ss_pred             HHHHHHHHhhcCCCHHH
Q 009622          389 EAAWAISNATSGGTHEQ  405 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~  405 (530)
                      .++.+++-+-.+.+...
T Consensus       694 naIfamGLiGAGTnNAR  710 (878)
T KOG2005|consen  694 NAIFAMGLIGAGTNNAR  710 (878)
T ss_pred             HHHHHhccccCCcchHH
Confidence            99999998877654433

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.85  E-value=1.5  Score=44.34  Aligned_cols=99  Identities=18%  Similarity=0.151  Sum_probs=72.7

Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 009622          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQ  362 (530)
Q Consensus       285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~  362 (530)
                      |++..++..+.+.+..+|..++.+|+.++..-.+ .+..+-.|++..|.+-+-+. .+.||.+|..+|+.+-.  +++++
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence            7778888888899999999999999988764333 33455567788888877777 89999999999999865  34443


Q ss_pred             HHHHHHhCcHHHHHHHHhcC-chhHHHHHHH
Q 009622          363 IQAVIEANIIGPLVALLENA-EFDIKKEAAW  392 (530)
Q Consensus       363 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~  392 (530)
                      .       +...|..+++.+ +.+||+.|+.
T Consensus       169 ~-------~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         169 R-------IVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             H-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence            2       344566666554 6778876653

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.83  E-value=0.44  Score=36.06  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=58.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      .+...+..+.++.+.+|-.|+..|++++... +...  .--.+++..+...|++++ +-+-..|+.+|..++...++
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~~~~--~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-SEPV--IDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-Ccch--hhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence            5678888899999999999999999999874 3111  112567888889999988 89999999999999985554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.73  E-value=11  Score=37.37  Aligned_cols=192  Identities=19%  Similarity=0.248  Sum_probs=117.6

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCc---hhhhhHhhcCChHHHHHhhc------CCCchhHHHHHHHHhhhhccCC
Q 009622          163 IFVKLLYSPSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGLVPLLAQLN------GQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~---~~~~~i~~~~~i~~Ll~ll~------~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .+..++...+.+-+-.++.....++...+   ..++.+.+.-+.+.+-+++.      ..++.-.+.-++..|..+|+.+
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35566666667777778888888875443   23445666555555555653      1234455667788899999988


Q ss_pred             CCCChhhhhchHHHHHHhhcCC-Chh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchh-HHHH
Q 009622          234 PQPPFDQVSPALPALAHLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV-LIPA  305 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~-d~~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~-~~~a  305 (530)
                      .......+-.-+|.|..++... |++      +..++..+|..++..... .+.++..|.++.+.++-.-.+... ..-+
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            6666666777889998888743 333      778888899888877554 456888899999988755443322 2223


Q ss_pred             HHHHhHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009622          306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (530)
Q Consensus       306 ~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  358 (530)
                      +.++--...+.+..   ...+.  .++..+..=+... +...+.+.|..|+.+...
T Consensus       174 l~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~~  226 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLSS  226 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhC
Confidence            33332222222111   11111  1133333333444 567888999999976653

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.54  E-value=1.8  Score=43.36  Aligned_cols=158  Identities=13%  Similarity=0.089  Sum_probs=111.2

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCChh
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~---~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      ....+.+.+.++++..+..|+..+..+...  ...+..++....+..|..++.++.   ..++...++.++..+-....-
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            567889999999999999999998877433  456788888888999999998876   234555555555554442211


Q ss_pred             hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622          151 HTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      ... .+...+|.....+...  .+..+-..|+..|-++...++..++.+.+.--+..++..+ +..+..++..|...+..
T Consensus       162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            111 1122334444444422  4556778888899888888877888888888899999999 77788888888888877


Q ss_pred             hccCCCC
Q 009622          229 FCRGKPQ  235 (530)
Q Consensus       229 L~~~~~~  235 (530)
                      +....+.
T Consensus       240 l~~~a~~  246 (713)
T KOG2999|consen  240 LFRKAPD  246 (713)
T ss_pred             HHhhCCh
Confidence            7776543

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.51  E-value=1.8  Score=37.98  Aligned_cols=114  Identities=17%  Similarity=0.137  Sum_probs=76.2

Q ss_pred             hCCCCchhHHHHHHHHhHhhcCCchhhHHHh----------------hcCchHHHHHhhcCC-----CchhHHHHHHHHH
Q 009622          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSGN-----YKKSIKKEACWTV  352 (530)
Q Consensus       294 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L  352 (530)
                      +.+.++.....++..|+|++.... ....++                ....+..|+.++..+     ....--...+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            344555677778888888887433 222222                123677777777661     1334556788899


Q ss_pred             HHHhcCCHHHHHHHHH--hCc--HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009622          353 SNITAGNREQIQAVIE--ANI--IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI  411 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  411 (530)
                      +|++.. ++.++.+++  .+.  +..|+..+.+.+..-|.-++.+|.|++...  +.-.+|..
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~  142 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLS  142 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcC
Confidence            999765 677777774  334  778888888887777788899999999953  44455553

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.50  E-value=1.1  Score=38.29  Aligned_cols=112  Identities=18%  Similarity=0.179  Sum_probs=80.0

Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CC
Q 009622          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GN  359 (530)
Q Consensus       285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~  359 (530)
                      .++.++..+|.+.++.-+..++..+..++..++..  .+.+  ...+..++.+|+....+.+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            56678899999999999999999999888765322  2322  24678888899887567889999999999875   45


Q ss_pred             HHHHHHHHH---hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          360 REQIQAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       360 ~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      ++..+.+..   .++++.++.+++.  ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            555555543   2345666666554  46677777777777653

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.38  E-value=5.5  Score=44.67  Aligned_cols=114  Identities=14%  Similarity=0.146  Sum_probs=61.0

Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC----------------CCChHHHHHHHHHH
Q 009622          374 PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV----------------CPDPRIVTVCLEGL  437 (530)
Q Consensus       374 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~----------------~~~~~v~~~al~~l  437 (530)
                      .|.++..+.-++||..|+.++..+............++.-+...+..+|+                ...++.....+.++
T Consensus      1001 ~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgI 1080 (1610)
T KOG1848|consen 1001 HLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGI 1080 (1610)
T ss_pred             HHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHH
Confidence            34444455556677777777666654322222222233333444444444                22234455566777


Q ss_pred             HHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622          438 ENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       438 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      .+++.-..+.-.    ..|.+....++.  ++-+..+..+.++++.-.|..-+++.
T Consensus      1081 aklf~e~fk~ll----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1081 AKLFSENFKLLL----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred             HHHHHHHHHHHH----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHH
Confidence            777654333211    133344444332  56667777889999988888777764

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.37  E-value=0.46  Score=39.50  Aligned_cols=75  Identities=16%  Similarity=0.222  Sum_probs=60.5

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~  492 (530)
                      ++..|..-+.+.++.++..++..|..+++.+...          |...+...+.++.|..+... .++.|++++..+|+.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~----------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~  107 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR----------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ  107 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH----------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence            4666667777899999999999999999876442          56667777888888888766 899999999999999


Q ss_pred             hCCCCC
Q 009622          493 YWLDDE  498 (530)
Q Consensus       493 ~~~~~~  498 (530)
                      |.....
T Consensus       108 W~~~f~  113 (144)
T cd03568         108 WADEFK  113 (144)
T ss_pred             HHHHhC
Confidence            865444

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.19  E-value=3.8  Score=35.51  Aligned_cols=144  Identities=15%  Similarity=0.215  Sum_probs=89.3

Q ss_pred             hHHHHHHHHhHhhcCCchhh-----HHHhh------cCchHHHHHh-hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009622          301 VLIPALRTVGNIVTGDDMQT-----QCVIE------YQALPCLLNL-LSGNYKKSIKKEACWTVSNITAGNREQIQAVIE  368 (530)
Q Consensus       301 ~~~~a~~~L~nl~~~~~~~~-----~~~~~------~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (530)
                      +|..|+.+|..++...+...     ..++.      .+.-+.|+.. +.++ ++.+|..|+.++..+..+........-+
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            56777777777776522110     11111      1233344444 4555 9999999999999999886555433321


Q ss_pred             h-------------------CcHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChH
Q 009622          369 A-------------------NIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR  428 (530)
Q Consensus       369 ~-------------------~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~  428 (530)
                      .                   .+...|+..+..+ +..+....+.++..++.....+..+.=+-..++..+..++.+.|++
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            1                   1234455555555 6778889999999998876433322101112344555666789999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 009622          429 IVTVCLEGLENILKVGE  445 (530)
Q Consensus       429 v~~~al~~l~~ll~~~~  445 (530)
                      ++..++.++..++...+
T Consensus       161 v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999988876543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.13  E-value=2.4  Score=36.80  Aligned_cols=141  Identities=18%  Similarity=0.131  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhcC-Ch----hhHHHHHh------CCCh-HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh-
Q 009622          133 LQFEAAWALTNIASG-TS----EHTKVVID------HGAV-PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-  199 (530)
Q Consensus       133 i~~~a~~~L~~l~~~-~~----~~~~~~~~------~g~i-~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-  199 (530)
                      +|..|+.+|..++.. ++    .....++-      .+.- +.+.-++.++++.+|..|+.++..+..+...+-...-+ 
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777764 11    11122221      1223 33444557789999999999999987654322111110 


Q ss_pred             ------------------cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC--hhhhhchHHHHHHhhcCCChhH
Q 009622          200 ------------------QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEV  259 (530)
Q Consensus       200 ------------------~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~l~~L~~ll~~~d~~v  259 (530)
                                        ...-..|+..+....+..+...++.++..|...-|...  ......++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence                              11233455555566688888999999999998875433  3455666777778888999999


Q ss_pred             HHHHHHHHHHhccC
Q 009622          260 LTDACWALSYLSDG  273 (530)
Q Consensus       260 ~~~a~~~l~~l~~~  273 (530)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999998887654

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.07  E-value=11  Score=38.10  Aligned_cols=165  Identities=12%  Similarity=0.069  Sum_probs=111.0

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhcCCchhh
Q 009622          245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVTGDDMQT  320 (530)
Q Consensus       245 l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nl~~~~~~~~  320 (530)
                      ...+...+.+++..-+..++..+..++... .....++....+..|.+++.++..    .+...++++++.+....- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            344566666777666666777888776543 456778888889999999988643    456666666666654222 11


Q ss_pred             HHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          321 QCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      ...+...++.....+..-. .+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+..
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            1112222333333333211 145667788888888888887777777777789999999999999999998888888887


Q ss_pred             CCCHHHHHHHHH
Q 009622          400 GGTHEQIKFLVI  411 (530)
Q Consensus       400 ~~~~~~~~~l~~  411 (530)
                      .+.++.+..+.+
T Consensus       243 ~a~~~~R~~~~~  254 (713)
T KOG2999|consen  243 KAPDDKRFEMAK  254 (713)
T ss_pred             hCChHHHHHHHH
Confidence            776665555443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=91.92  E-value=16  Score=37.29  Aligned_cols=259  Identities=13%  Similarity=0.078  Sum_probs=135.3

Q ss_pred             HHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009622           79 VAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (530)
Q Consensus        79 ~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  157 (530)
                      -.++..+ ..+.+..++..+..++........  ..    =..+.+.+.....++.-..-+.+|..++.+..+. . .++
T Consensus        34 ~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~--~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~  105 (464)
T PF11864_consen   34 KDLIDPNQPSEARRAALELLIACIKRQDSSSG--LM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D-FFE  105 (464)
T ss_pred             hhhcCCCCCHHHHHHHHHHHHHHHHccccccH--HH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcc
Confidence            3344444 356788888888887766422111  11    1123344443322332233334444444432222 2 245


Q ss_pred             CCChHHHHHhhCCC---------------------------CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh
Q 009622          158 HGAVPIFVKLLYSP---------------------------SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL  210 (530)
Q Consensus       158 ~g~i~~L~~lL~~~---------------------------~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll  210 (530)
                      .++.+.|...+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+.
T Consensus       106 ~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC  185 (464)
T PF11864_consen  106 YEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTIC  185 (464)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            66777777766320                           122333445555566544432222112223455555555


Q ss_pred             cCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009622          211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (530)
Q Consensus       211 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L  290 (530)
                      ....+....+.++.++-.+.... ..+......++..|.......  +....+-.++.||+......       ..+..|
T Consensus       186 ~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L  255 (464)
T PF11864_consen  186 KSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTL  255 (464)
T ss_pred             hccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHH
Confidence            44555555566666666666553 122223334444444443222  45555666777777543321       235667


Q ss_pred             HHhhCC------CCchhHHHHHHHHhHhhcCCchhhHHHhhc---CchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622          291 AEFLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       291 ~~lL~~------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                      ..+|.+      .+..+..-|+..++.+..+..+....-+..   -+++.+...++.. ++.+-.+....+.++.
T Consensus       256 ~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  256 CDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence            777732      244567788999998887763332222222   2788888888877 7777777777777776

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.91  E-value=14  Score=36.40  Aligned_cols=132  Identities=11%  Similarity=0.105  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-Hh--cCchhHHHHHHHHHHHhhcCCCH-----------HHHH
Q 009622          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LE--NAEFDIKKEAAWAISNATSGGTH-----------EQIK  407 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~--~~~~~v~~~a~~aL~nl~~~~~~-----------~~~~  407 (530)
                      ..-|..|+..|..++.........++. +.+..++.- -.  ..+++-+..|+..++.++..+..           -...
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            345677888888888654444333332 123332221 11  23678899999999999876521           1345


Q ss_pred             HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009622          408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  487 (530)
Q Consensus       408 ~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~  487 (530)
                      .+....+++.|. --.+..|-++..|++.+..+-...++             +.+  .+.+..+.....+++.-|+..|.
T Consensus       304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~-------------~~l--~~~~~~l~~~L~~~~~vv~tyAA  367 (370)
T PF08506_consen  304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK-------------EQL--LQIFPLLVNHLQSSSYVVHTYAA  367 (370)
T ss_dssp             HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-------------HHH--HHHHHHHHHHTTSS-HHHHHHHH
T ss_pred             HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-------------HHH--HHHHHHHHHHhCCCCcchhhhhh
Confidence            556666677666 22244555666777766655444332             111  34567888888999999998887


Q ss_pred             HHH
Q 009622          488 KLL  490 (530)
Q Consensus       488 ~il  490 (530)
                      ..|
T Consensus       368 ~~i  370 (370)
T PF08506_consen  368 IAI  370 (370)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.86  E-value=13  Score=39.76  Aligned_cols=196  Identities=18%  Similarity=0.134  Sum_probs=106.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhC----
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG----  188 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~----  188 (530)
                      .+..+.+++....  --..+|++.|..+......-...     .+..+..++.+    .++.++..|+.+++.+..    
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            3556667777644  11233455555554422122222     24556666654    456788888888888763    


Q ss_pred             CC-----chhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC---Ch
Q 009622          189 DS-----PRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DD  257 (530)
Q Consensus       189 ~~-----~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~---d~  257 (530)
                      ..     ............++.+...+.   ...+..-+..++.+|.|+-.          ...++.+..++...   +.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence            21     001111222335666666664   34466778888999999854          34678888887766   67


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh
Q 009622          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (530)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  335 (530)
                      .++..|++++..+....+..+.        +.+++++.+.  +.++|..|+.+|...   ++..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence            8899999999988766654333        5566666553  466888877666432   2222       235566777


Q ss_pred             hcCCCchhHHHH
Q 009622          336 LSGNYKKSIKKE  347 (530)
Q Consensus       336 L~~~~~~~v~~~  347 (530)
                      +..+.+..|...
T Consensus       601 l~~E~~~QV~sf  612 (618)
T PF01347_consen  601 LWNEPSNQVASF  612 (618)
T ss_dssp             HTT-S-HHHHHH
T ss_pred             HhhCchHHHHHH
Confidence            766545555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.78  E-value=1.4  Score=38.63  Aligned_cols=109  Identities=10%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHH-HhcCChhhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHhhh
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTN-IASGTSEHTKVVIDHGAVPIFVKLLYS---------PSDDVREQAVWALGNIA  187 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~~~~~a~~~L~nl~  187 (530)
                      ...+++.+.+.. ...  ..+..|.. +-.....+...+++.|++..|+.+|..         .+..+...++.+|..|.
T Consensus        68 p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   68 PEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            444566665544 111  22222222 223345678888888999999998843         34578888999999998


Q ss_pred             CCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622          188 GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       188 ~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      .........+...+++..++..+ .+++..++..++..|..+|
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            77776666666678898999988 7888999999999998877

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.75  E-value=18  Score=38.23  Aligned_cols=135  Identities=17%  Similarity=0.157  Sum_probs=79.9

Q ss_pred             ChHHHHHhhcC---CCchhHHHHHHHHhhhhccCC----CCCChhhhhchHHHHHHhhc----CCChhHHHHHHHHHHHh
Q 009622          202 GLVPLLAQLNG---QPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYL  270 (530)
Q Consensus       202 ~i~~Ll~ll~~---~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~~l~~L~~ll~----~~d~~v~~~a~~~l~~l  270 (530)
                      .+..+..++..   .....+...++-+++.+....    +.........+++.+...+.    ..+.+.+.-.+.+|+|+
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            45566666632   224556666666666665422    21112233456666665553    34566667788888887


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhhC-C--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHH
Q 009622          271 SDGTNDKIQAVIEAGVFPRLAEFLM-H--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKK  346 (530)
Q Consensus       271 ~~~~~~~~~~~~~~~~i~~L~~lL~-~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~  346 (530)
                      ....           .+..+..++. .  .+..+|..|+++|..++...+...        -+.++.++.+. .++++|.
T Consensus       474 g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      474 GHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             CChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence            5432           2344444444 2  245689999999998876555433        44566666553 2678888


Q ss_pred             HHHHHHHHH
Q 009622          347 EACWTVSNI  355 (530)
Q Consensus       347 ~a~~~L~nl  355 (530)
                      .|+.+|...
T Consensus       535 aA~~~lm~t  543 (574)
T smart00638      535 AAVLVLMET  543 (574)
T ss_pred             HHHHHHHhc
Confidence            888777554

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.51  E-value=8.2  Score=35.81  Aligned_cols=213  Identities=18%  Similarity=0.122  Sum_probs=118.5

Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcCCC--CCc-HHHHH-----------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009622           79 VAGVWSNDSGVQYECTTQFRKLLSIER--SPP-IEEVI-----------RSGVVPRFVEFLLREDYPQLQFEAAWALTNI  144 (530)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~--~~~-~~~~~-----------~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l  144 (530)
                      +.+|.+..+..-..|+..+.+++..-+  .+. .+.+.           -.|+.+.+++=+.++.   ....++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            345666666677777777777765421  111 11111           1244444445444443   344555566665


Q ss_pred             hcCC-------hhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCC
Q 009622          145 ASGT-------SEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ  213 (530)
Q Consensus       145 ~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~  213 (530)
                      +.-.       .+.+-.+.=.+.+|.++..+.+++    ......++..|+.+|....        ...+..++....+.
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            5521       112222222345777777777765    2344566778888874322        12344444444322


Q ss_pred             ---CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009622          214 ---PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (530)
Q Consensus       214 ---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L  290 (530)
                         ...+....++..|+.-..  |    .....++-.|..++.++-+.++..++..|..+...-+-...  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence               244555555555543322  1    12345667788889888899999999999888765443222  455788899


Q ss_pred             HHhhCCCCchhHHHHHHHHhHhh
Q 009622          291 AEFLMHPSPSVLIPALRTVGNIV  313 (530)
Q Consensus       291 ~~lL~~~~~~~~~~a~~~L~nl~  313 (530)
                      .+++.++.+   ..|+.++-++.
T Consensus       234 lrlL~t~~~---~eAL~VLd~~v  253 (262)
T PF14225_consen  234 LRLLQTDLW---MEALEVLDEIV  253 (262)
T ss_pred             HHHhCCccH---HHHHHHHHHHH
Confidence            999987754   45555555444

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=91.39  E-value=2.4  Score=36.11  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009622          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (530)
                      .+++.|+.+|+.+.+..+|.++..++|.|.+-+|...+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k   47 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK   47 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence            45778888898886789999999999999986665444

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=91.29  E-value=16  Score=36.78  Aligned_cols=261  Identities=11%  Similarity=0.076  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch-hhh--hHhhcCChHHH
Q 009622          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CRD--LVLSQGGLVPL  206 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~-~~~--~i~~~~~i~~L  206 (530)
                      +.+.....+++..+-.+-......+++. .+..+....++ .++..-.....+++.+...... ...  .-++...++++
T Consensus        44 eylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f  122 (435)
T PF03378_consen   44 EYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF  122 (435)
T ss_dssp             HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence            4455555555544444333333333321 23333333444 4565555555555555432111 111  12344467777


Q ss_pred             HHhhcCCCchhHHHHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009622          207 LAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA  284 (530)
Q Consensus       207 l~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~  284 (530)
                      ...| ...-.+..-++...++.|.+..+ .........++|.|+.-.- .....+ -...+.|..........+   ...
T Consensus       123 ~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i---~~~  197 (435)
T PF03378_consen  123 QEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI---VAN  197 (435)
T ss_dssp             HHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG-------
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh---cch
Confidence            7777 44445666777777777766554 2222233444444432211 111111 122223322222211111   111


Q ss_pred             ----CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh-HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-C
Q 009622          285 ----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-G  358 (530)
Q Consensus       285 ----~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~  358 (530)
                          +++..+-+++.+...  -..+...|..+....+... +..+ ..++..++.-|++.......+.-+..++.++. .
T Consensus       198 ~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~  274 (435)
T PF03378_consen  198 NQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY  274 (435)
T ss_dssp             S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc
Confidence                233334445555432  2456677777766554321 1111 23555566666655456666666666666554 3


Q ss_pred             CHHHHHHHHH---hCcHHHHHHH--H---hc-CchhHHHHHHHHHHHhhcC
Q 009622          359 NREQIQAVIE---ANIIGPLVAL--L---EN-AEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       359 ~~~~~~~l~~---~~~i~~L~~l--l---~~-~~~~v~~~a~~aL~nl~~~  400 (530)
                      +++..-..++   .|+...++.-  +   .. ..+.-|+-++.+++++...
T Consensus       275 g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  275 GPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             -HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            4444433332   4555554442  1   11 1234466667777776654

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.28  E-value=1.1  Score=33.99  Aligned_cols=77  Identities=9%  Similarity=0.095  Sum_probs=57.9

Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009622          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF  408 (530)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  408 (530)
                      +...+..+.++ .+.+|..+...|..+.....  ....--.+++..+...++++|+-|--.|+.+|..++.....+....
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence            45566777777 88899999999999988544  1112224678888889999999999999999999998654333333

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.26  E-value=1.3  Score=38.96  Aligned_cols=141  Identities=13%  Similarity=0.152  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHH
Q 009622           90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVPIF  164 (530)
Q Consensus        90 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L  164 (530)
                      ...|+..|.-++|.  .+....+++..+--.+..+|...+    ..-++..++.+++.+...+ ++....+....++|..
T Consensus       117 vcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         117 VCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            44566666666654  233333334443223344544322    3568889999999999854 5566667778999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhc-------CChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          165 VKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       165 ~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~-------~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ++++...++.-+..++.++..+.+++......+...       ..+..++..+-+.....+.+.++.+-..||..
T Consensus       195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            999999888888999999999988876544332211       12222333332444566667777776666655

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=91.26  E-value=12  Score=34.67  Aligned_cols=221  Identities=14%  Similarity=0.097  Sum_probs=131.1

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009622          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (530)
Q Consensus       163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  241 (530)
                      .|-..|.++++.+|..++.+|+.+...-+..  . +...-+..|+..... -.|......++.++..|..... ......
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPESA   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhhH
Confidence            4556778889999999999999988665521  1 222234445444421 1355555566777777774432 222223


Q ss_pred             hchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCch
Q 009622          242 SPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDM  318 (530)
Q Consensus       242 ~~~l~~L~~ll~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~  318 (530)
                      ..++..+.+-..  +.-...+..+...+..+........+ -...+++..+++.+..+ +|.....+...+..+...-+ 
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-  156 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-  156 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence            334444443222  22355677788888887766443332 22336777888887764 67777777777777765433 


Q ss_pred             hhHHHhhcCchHHHHHhhcC--------CC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          319 QTQCVIEYQALPCLLNLLSG--------NY-KK--SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~--------~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                           + ....+.+...+..        +. ++  -.+..-...|.+....++...     .-.+|.|++-|.++.+.++
T Consensus       157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHH
Confidence                 1 2333444444421        11 22  233444455555555444322     2468999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 009622          388 KEAAWAISNATSG  400 (530)
Q Consensus       388 ~~a~~aL~nl~~~  400 (530)
                      ..++.+|..++..
T Consensus       226 ~D~L~tL~~c~~~  238 (262)
T PF14500_consen  226 LDSLQTLKACIEN  238 (262)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=90.97  E-value=17  Score=35.83  Aligned_cols=306  Identities=14%  Similarity=0.137  Sum_probs=152.1

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCC-CcHHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           84 SNDSGVQYECTTQFRKLLSIERS-PPIEEVIRSGVVPRFVEFLL----R------EDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~-~~~~~~~~~g~v~~Lv~ll~----~------~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.+.+.+..|-..|.+.+....+ +....+.+  -++.+++.+.    +      +.+..+..+|+++|+.+.. +++..
T Consensus         4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~   80 (372)
T PF12231_consen    4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV   80 (372)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence            44555666666666666655332 22332221  1444444332    1      1136788999999999887 44444


Q ss_pred             HHHHhC---CChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---C-CCchhHHHHHH
Q 009622          153 KVVIDH---GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNAT  223 (530)
Q Consensus       153 ~~~~~~---g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~-~~~~~~~~~a~  223 (530)
                      ..+-+.   -++...+..+..  .+..+....+|+|..=-.     ...++....+..++..+.   + -+...+....+
T Consensus        81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f-----~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL  155 (372)
T PF12231_consen   81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF-----SPKIMTSDRVERLLAALHNIKNRFPSKSIISERL  155 (372)
T ss_pred             hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-----CCcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence            333221   134555566644  445677778888765321     122333444555555442   2 34667777788


Q ss_pred             HHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--CChHHH-H---HHHHh----C-----cHH
Q 009622          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--GTNDKI-Q---AVIEA----G-----VFP  288 (530)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~--~~~~~~-~---~~~~~----~-----~i~  288 (530)
                      .++.+|....|..-......=+|.++..+-+....++..|...+..+..  ...... .   ...+.    +     +.+
T Consensus       156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  235 (372)
T PF12231_consen  156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE  235 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence            8888888765433222233345666666666667776665554444321  111111 1   11111    2     334


Q ss_pred             HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CCHHHHHH
Q 009622          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQA  365 (530)
Q Consensus       289 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~  365 (530)
                      .+..++.+.+......-+|..--+.-++.....--.-...+......+.++ ++.+|..|..+=..+..   .+......
T Consensus       236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k  314 (372)
T PF12231_consen  236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK  314 (372)
T ss_pred             HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence            466666663333333333332222222221111111234556666677787 88888877644333332   22222222


Q ss_pred             HHHhCcHHHHHHHHhcC-ch----hHHHHHHHHHHHhhc
Q 009622          366 VIEANIIGPLVALLENA-EF----DIKKEAAWAISNATS  399 (530)
Q Consensus       366 l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~nl~~  399 (530)
                      .+.. +..++...+... ..    .++..+...++++..
T Consensus       315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            2222 223334344433 33    667777777777765

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.93  E-value=1.5  Score=36.14  Aligned_cols=74  Identities=9%  Similarity=-0.054  Sum_probs=60.9

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHhhh
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll~~~  444 (530)
                      .+..+.+-+.++++.++..|+..|-.++.++.......+.+.+++..|+.++..      .++.|+..++..+...-...
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            456677788899999999999999999998888888888888999999999853      46789988888777665433

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.73  E-value=23  Score=37.13  Aligned_cols=185  Identities=15%  Similarity=0.064  Sum_probs=113.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-h----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGT-S----EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~-~----~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~  192 (530)
                      =|.|.+-|+-.+ ..+|..|+..+.++---. +    +..+.+++.. ...|-.+|+++.+.+|..|+..++.+.+.-- 
T Consensus       176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW-  252 (1005)
T KOG1949|consen  176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFW-  252 (1005)
T ss_pred             hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-
Confidence            345556666677 899999999998875422 2    3344444433 5678889999999999999888777653221 


Q ss_pred             hhhhHhhcCC----hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 009622          193 CRDLVLSQGG----LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS  268 (530)
Q Consensus       193 ~~~~i~~~~~----i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~  268 (530)
                         .++...+    +..+..-+..++..+++......|..+..++  ........++|.+-..|......|+..+...|.
T Consensus       253 ---e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll  327 (1005)
T KOG1949|consen  253 ---EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL  327 (1005)
T ss_pred             ---HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence               1111122    3333333334556688888888888887764  233344667777777888888888888877776


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009622          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (530)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~  313 (530)
                      .+-...-   ..+.+---.+.++..|..++..+....+..+-+.+
T Consensus       328 ~ik~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  328 KIKAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             HHHhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            6532221   11222222345555666666555555555554443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=90.09  E-value=6.5  Score=41.50  Aligned_cols=136  Identities=17%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             hchHHHHHHhhcCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhhC----CCCchhHHHHHHHH
Q 009622          242 SPALPALAHLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTV  309 (530)
Q Consensus       242 ~~~l~~L~~ll~~~----d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~lL~----~~~~~~~~~a~~~L  309 (530)
                      ...+..+..++.++    ...+...++-+++.+..    ..+..-. .+-..+++.+...|.    ..+...+..++.+|
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  470 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL  470 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence            34556666666643    45566666767766652    1111001 111234555555443    34555677889999


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhc-CC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chh
Q 009622          310 GNIVTGDDMQTQCVIEYQALPCLLNLLS-GN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFD  385 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~  385 (530)
                      ||+....           .++.+..++. .. ....+|..|+|+|..++...+..        +-+.|+.++.+.  +++
T Consensus       471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E  531 (574)
T smart00638      471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE  531 (574)
T ss_pred             hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence            9987522           2445555554 21 15689999999999998655543        345666666554  688


Q ss_pred             HHHHHHHHHHHh
Q 009622          386 IKKEAAWAISNA  397 (530)
Q Consensus       386 v~~~a~~aL~nl  397 (530)
                      +|..|+.+|...
T Consensus       532 vRiaA~~~lm~t  543 (574)
T smart00638      532 VRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHHhc
Confidence            999988888765

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.04  E-value=31  Score=40.53  Aligned_cols=230  Identities=16%  Similarity=0.073  Sum_probs=118.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      ...++..+...+ |..+..+..+++.++..-++.  .++ .+..+.++.-+.+ .++..|..-..+++.+-.+....-..
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            344455555566 777777777777777622211  111 1233455555544 55555555555666554322111111


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCC---hhHHHHHHHH-------
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND---DEVLTDACWA-------  266 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~-------  266 (530)
                      -.....+..++.+..++..+.++..++.++..+..............-+..+..++.+..   .++....-++       
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            111224556666665666789999999999998877644445555555555555554332   2222221111       


Q ss_pred             ------HHHhccCCh--HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC
Q 009622          267 ------LSYLSDGTN--DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG  338 (530)
Q Consensus       267 ------l~~l~~~~~--~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~  338 (530)
                            ++.=...+.  +.... ...-.+-...-++.++++.++..++.++-++-...+.....   .-+++.+..++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence                  111111111  11111 11122333344456678888889999998887655543211   2345666666665


Q ss_pred             CCchhHHHHHHHHHHHHh
Q 009622          339 NYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~  356 (530)
                      . .--.|+.+.-++..+.
T Consensus      1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             h-hhhhhhhHHhhhhHHh
Confidence            5 3334444444444444

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=89.87  E-value=11  Score=34.56  Aligned_cols=130  Identities=14%  Similarity=0.121  Sum_probs=70.5

Q ss_pred             HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHH
Q 009622          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      +...++.++.+++.++..    .-..+|...+..-...-..+-.|-++.|..++.++. +.-+|..|+.+|..++...+.
T Consensus        71 e~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~  146 (249)
T PF06685_consen   71 EERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI  146 (249)
T ss_pred             hhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence            346778899998766531    111222222111111111223455677777787764 567899999999999986666


Q ss_pred             HHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 009622          362 QIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL  418 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L  418 (530)
                      .+..+++  .+..++.. +...+..+-..-+..++.+-...-...++.+.+.|+++..
T Consensus       147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~  202 (249)
T PF06685_consen  147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS  202 (249)
T ss_pred             CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence            6666654  44445544 3333333333333344444333233455666677777553

The function of this family is unknown.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.79  E-value=4.4  Score=34.69  Aligned_cols=115  Identities=12%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHHHHHHhcC-chhHHHHHHHHHHHhhc--CC
Q 009622          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPLVALLENA-EFDIKKEAAWAISNATS--GG  401 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~--~~  401 (530)
                      .....+..+|.+. ++.-|..++..+.-.+..++.  ..+.+  ...+..++.+++.+ .+.++..++.++..+..  .+
T Consensus        25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4567788899888 888888888888877765422  12222  23678888888877 46788889999988875  22


Q ss_pred             CHHHHHHHHHc---CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          402 THEQIKFLVIQ---GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       402 ~~~~~~~l~~~---~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      .++..+.+...   +++..++.+++.  ......++.+|..++...+.
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            44544444432   335555555554  56777899999999987665

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.50  E-value=51  Score=38.92  Aligned_cols=273  Identities=14%  Similarity=0.131  Sum_probs=141.5

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChh
Q 009622          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFD  239 (530)
Q Consensus       161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~  239 (530)
                      +..+..-+..+++..+..+..+++.++...+.-  . .-.+..+.+++-+....++-.+..-..++..+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~-f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--P-FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--c-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            344555556678888888888888888543321  1 112245566666755666766766777788777765 333344


Q ss_pred             hhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCc---hhHH------------
Q 009622          240 QVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP---SVLI------------  303 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~~~------------  303 (530)
                      .....+..+..+...+ ++.|+..++.++..+.+.........+. -.+..+..+|-+..+   ++..            
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            4556667777776655 5699999999999988654433332332 233344444433221   1111            


Q ss_pred             -HHHHHHhHhhcCCch-hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc
Q 009622          304 -PALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN  381 (530)
Q Consensus       304 -~a~~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  381 (530)
                       ....++|+=..++.. ..-..+..-.+-...-++.++ ++.++.++..++-++-...+.+...   .-+++.|+.++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence             122223322222221 111112222233334445555 8888999999988876543332211   1245666666555


Q ss_pred             CchhHHHHHHHHHHHhhcCCCHHHHH-----------------HHH-HcCChHHHHhccC-CCChHHHHHHHHHHHHHH
Q 009622          382 AEFDIKKEAAWAISNATSGGTHEQIK-----------------FLV-IQGCIKPLCDLLV-CPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       382 ~~~~v~~~a~~aL~nl~~~~~~~~~~-----------------~l~-~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll  441 (530)
                      .-.-.|.....++..+......+.++                 ... +.|.=-.+..+++ ..|.+++..++..+.+++
T Consensus      1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred             hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            43333343333333333321111000                 011 2233334444554 345667777777777644

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.22  E-value=7.5  Score=36.37  Aligned_cols=144  Identities=19%  Similarity=0.176  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHH
Q 009622          134 QFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVP  205 (530)
Q Consensus       134 ~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~  205 (530)
                      +.=++-.+.-++. ++.....+...+  +...+..++.    +..+..+-.++++++|+..+.. .+..+....  .+..
T Consensus        80 ~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~  157 (268)
T PF08324_consen   80 RFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILE  157 (268)
T ss_dssp             -HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHH
T ss_pred             chhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHH
Confidence            4444444444443 444444443322  2333333332    2567788899999999987765 455554432  2333


Q ss_pred             HHHhhcCCC---chhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhhc-C-CChhHHHHHHHHHHHhccCChHHH
Q 009622          206 LLAQLNGQP---KLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH-S-NDDEVLTDACWALSYLSDGTNDKI  278 (530)
Q Consensus       206 Ll~ll~~~~---~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll~-~-~d~~v~~~a~~~l~~l~~~~~~~~  278 (530)
                      .+..+..+.   +..++..++..+.|++...  ..........++..+...+. . .|++....++.+++++...++...
T Consensus       158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~  237 (268)
T PF08324_consen  158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK  237 (268)
T ss_dssp             HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence            333332332   7889999999999987654  11122233445666666333 2 589999999999999996665443


Q ss_pred             H
Q 009622          279 Q  279 (530)
Q Consensus       279 ~  279 (530)
                      .
T Consensus       238 ~  238 (268)
T PF08324_consen  238 Q  238 (268)
T ss_dssp             H
T ss_pred             H
Confidence            3

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=89.00  E-value=8  Score=41.35  Aligned_cols=157  Identities=18%  Similarity=0.194  Sum_probs=109.1

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..++..|.|.+..+...+-..+...+...+.+   +     ++..|+++.-+..+    ..|+.+|..+-.  +..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence            6789999999999988888888888877654222   2     36667776544442    345556654432  3222 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                           .++..|-..+.  .+..|-.++..|+.+....|..-..+.+...+..|+++|..+.+..+...|+.+|..|.-.-
T Consensus        70 -----~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 22345555665  34678889999999998887777888999999999999988889999999999988887655


Q ss_pred             CCCChhhhhchHHHHHHhh
Q 009622          234 PQPPFDQVSPALPALAHLI  252 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll  252 (530)
                      +.........++.....++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            4443344444444444444

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=88.85  E-value=1.4  Score=36.66  Aligned_cols=74  Identities=8%  Similarity=0.030  Sum_probs=60.8

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~  146 (530)
                      +++..+.+.|+++++.++..|+..|.-+..+.+......+.+.+++..|+.++....++.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            47788888999999999999999999888775455556777888999999999754458899999988887765

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=88.67  E-value=41  Score=36.73  Aligned_cols=114  Identities=16%  Similarity=0.171  Sum_probs=68.8

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhc
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL  450 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~  450 (530)
                      +-..+...+..+++.+-...+.++.++..-......+   ...-++.-..-.+..-..+...+..+|.++....+     
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~-----  513 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP-----  513 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----
Confidence            3445566666677778888888888877632111000   00011111111111111233344444555544432     


Q ss_pred             CCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009622          451 GNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD  497 (530)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~  497 (530)
                           +....++.+.+....+-.+.-|+++++|+.|..++...|+.+
T Consensus       514 -----~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~  555 (727)
T PF12726_consen  514 -----SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD  555 (727)
T ss_pred             -----HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence                 336788888899999999999999999999999999999743

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=88.15  E-value=2.5  Score=35.21  Aligned_cols=72  Identities=8%  Similarity=0.058  Sum_probs=61.3

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHHHHHHHHHHh
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILK  442 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~al~~l~~ll~  442 (530)
                      .+..|.+-+.++++.++..|+..|-.++.++.......+.+..++..|..++.. .++.|...++..+.....
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            556777778889999999999999999999988888888899999999999987 678888888877766543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.92  E-value=42  Score=35.98  Aligned_cols=153  Identities=13%  Similarity=0.058  Sum_probs=75.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-CC--CCHHHHHHHHHHHHhhhCCCch
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL-YS--PSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~--~~~~~~~~a~~~L~nl~~~~~~  192 (530)
                      +.+..+-+-|.-+|...-|..|+..+..++.........++. +.+..+++-. .+  .++.-++.++..+..++.....
T Consensus       361 ~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t  439 (960)
T KOG1992|consen  361 NPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQT  439 (960)
T ss_pred             CHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcch
Confidence            333344444443332233566667777777754443333332 2233333322 22  4566777788888777754322


Q ss_pred             hhhhHhhc----CChHH----HHHhhcC---CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHH
Q 009622          193 CRDLVLSQ----GGLVP----LLAQLNG---QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLT  261 (530)
Q Consensus       193 ~~~~i~~~----~~i~~----Ll~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~  261 (530)
                      .+.-+...    +.+..    ++.-|..   ...+-++..++.   .+..............++|.++.+|+++..-+-.
T Consensus       440 ~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIK---y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhs  516 (960)
T KOG1992|consen  440 AKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIK---YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHS  516 (960)
T ss_pred             hhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccc---eeeeecccCChHHHHHHHHHHHHhccCcchHHHH
Confidence            11111111    11111    1112211   112222222222   1222222333445567899999999998888889


Q ss_pred             HHHHHHHHhcc
Q 009622          262 DACWALSYLSD  272 (530)
Q Consensus       262 ~a~~~l~~l~~  272 (530)
                      +|+.++-.+..
T Consensus       517 YAA~aiEkil~  527 (960)
T KOG1992|consen  517 YAAIAIEKLLT  527 (960)
T ss_pred             HHHHHHHhccc
Confidence            99988877653

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=87.75  E-value=2.2  Score=39.97  Aligned_cols=189  Identities=14%  Similarity=0.091  Sum_probs=103.1

Q ss_pred             HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC--chHHHHHhhcCC---CchhHHHHHHHHHHHHhcCCHHH
Q 009622          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN---YKKSIKKEACWTVSNITAGNREQ  362 (530)
Q Consensus       288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~--~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~  362 (530)
                      ..+...+.+-....+-+++..+.-++...+ ....+...+  +...+..++...   ..+..+.-++++++|+..+.. .
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~  143 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-G  143 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-C
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-c
Confidence            445555555555667888888766655333 222222221  234444444332   267788899999999987532 2


Q ss_pred             HHHHHH-hC--cHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh-ccC-CCChHHHHHHH
Q 009622          363 IQAVIE-AN--IIGPLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD-LLV-CPDPRIVTVCL  434 (530)
Q Consensus       363 ~~~l~~-~~--~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~-lL~-~~~~~v~~~al  434 (530)
                      ...+.. .+  ++..+..+..+.   +..++..++..+.|++..........=....++..+.. +.. ..|++....++
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            333332 22  233333333332   67899999999999975210000000001123555666 333 36899999999


Q ss_pred             HHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHH
Q 009622          435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKL  489 (530)
Q Consensus       435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~i  489 (530)
                      -++++++..+..           ........|....+.... ....+.+++-+.+|
T Consensus       224 vAlGtL~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  224 VALGTLLSSSDS-----------AKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HHHHHHHCCSHH-----------HHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHhccChh-----------HHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            999999955443           233344345555555553 55666676666553

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.57  E-value=2.2  Score=34.99  Aligned_cols=74  Identities=9%  Similarity=-0.005  Sum_probs=58.3

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCH-HHHHHHHHHHHHHhc
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYP-QLQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~-~i~~~a~~~L~~l~~  146 (530)
                      +++..+.+.|+++++.++..|+..|-.+..+.+.+....+...+++..|+.++...... .++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            47788888899999999999999999888876445556677788899999998876533 388888887777665

Unpublished observations. Domain of unknown function.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.12  E-value=52  Score=35.19  Aligned_cols=314  Identities=14%  Similarity=0.105  Sum_probs=166.7

Q ss_pred             CHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHH--HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEV--IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        74 ~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~--~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      ....++++++.. |.-++..+++.++-++...+ =.-+.+  .-..+...+..++..-..-+.+...+..|+.+.....+
T Consensus       527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n-F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e  605 (978)
T KOG1993|consen  527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN-FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE  605 (978)
T ss_pred             HHHHHHHhcCccccceeehHHHHHHHHhhhhcc-CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            456677777765 67788888998887765431 111111  11333444555555432235566677777766653333


Q ss_pred             hHHHHHhCCChHHHHHhh------CCCCHHHHHHHHHHHHhhhC---C-CchhhhhHhhcCChHHHHHhhcC---CCchh
Q 009622          151 HTKVVIDHGAVPIFVKLL------YSPSDDVREQAVWALGNIAG---D-SPRCRDLVLSQGGLVPLLAQLNG---QPKLS  217 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL------~~~~~~~~~~a~~~L~nl~~---~-~~~~~~~i~~~~~i~~Ll~ll~~---~~~~~  217 (530)
                      .....     ...+++++      .+..+-++.+.+.+|.|+..   . ++.+.      .++-+++.+..+   .+..-
T Consensus       606 ~I~P~-----~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~  674 (978)
T KOG1993|consen  606 HIAPY-----ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVY  674 (978)
T ss_pred             hhhHH-----HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceee
Confidence            33211     12222222      22456678888888888762   1 22111      123344444321   12334


Q ss_pred             HHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009622          218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  296 (530)
                      +.+.+.........+.+... ...-+++|.+...++...+.+.. ++..+ +++.-......+ ....|++..+..++.+
T Consensus       675 L~EDgmeLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~d  751 (978)
T KOG1993|consen  675 LLEDGMELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDD  751 (978)
T ss_pred             hhhhHHHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHH
Confidence            45555544444444432222 23456778888777655444332 22333 333333333222 3344788888888877


Q ss_pred             CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHH
Q 009622          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGP  374 (530)
Q Consensus       297 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~  374 (530)
                      -..+-....+.++..+...++ ........++++.+..-+-.+ ..|.+...-..+++.+.-.+++....+++. .-...
T Consensus       752 vr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~  830 (978)
T KOG1993|consen  752 VRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDI  830 (978)
T ss_pred             hhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHH
Confidence            666667777777777776554 333445567788777665332 256777777778888877777766555532 11112


Q ss_pred             HH--------HHHhc-CchhHHHHHHHHHHHhhcCCCH
Q 009622          375 LV--------ALLEN-AEFDIKKEAAWAISNATSGGTH  403 (530)
Q Consensus       375 L~--------~ll~~-~~~~v~~~a~~aL~nl~~~~~~  403 (530)
                      ++        .+..+ .+++-|+--+-|+..+...+.+
T Consensus       831 ~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~  868 (978)
T KOG1993|consen  831 LIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNP  868 (978)
T ss_pred             HHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCc
Confidence            22        12221 2456666666666666655443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.06  E-value=4.5  Score=35.73  Aligned_cols=138  Identities=8%  Similarity=0.121  Sum_probs=88.2

Q ss_pred             HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHH
Q 009622          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----NYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLV  376 (530)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~  376 (530)
                      ...|+..+..+++ .++....++++.+--.+...|..    ....-+|-.+..+++.+.. +++..+..+....++|.++
T Consensus       117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            3456666666665 45555556666554444444432    2245688899999999987 6777888888899999999


Q ss_pred             HHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--------CChHHHH-hccCCCChHHHHHHHHHHHHHHh
Q 009622          377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       377 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l~~L~-~lL~~~~~~v~~~al~~l~~ll~  442 (530)
                      ++++.++.--+.-|+..+..+....  ....++++.        .++..++ .+.+.....+...++.+..++..
T Consensus       196 rIme~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            9999998777888888888777643  333333221        1222222 23344566677777666655543

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=86.02  E-value=11  Score=36.65  Aligned_cols=216  Identities=19%  Similarity=0.120  Sum_probs=107.9

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009622          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  193 (530)
                      ..++..|..++..+.++......+.+++.-+..- .+.     ...++..+.+-+.+..+.+|..-+..++.+....+..
T Consensus        21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~   95 (339)
T PF12074_consen   21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS   95 (339)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence            4456677777776554666666666665544311 111     1234567777777776779998888888887511100


Q ss_pred             hhhHhhcCChHHHHHhhc---CCCchhHH---HHHHHHhhhhccCC-CCCCh--hh----hhchHHH-H--HHhhcC-CC
Q 009622          194 RDLVLSQGGLVPLLAQLN---GQPKLSML---RNATWTLSNFCRGK-PQPPF--DQ----VSPALPA-L--AHLIHS-ND  256 (530)
Q Consensus       194 ~~~i~~~~~i~~Ll~ll~---~~~~~~~~---~~a~~~L~~L~~~~-~~~~~--~~----~~~~l~~-L--~~ll~~-~d  256 (530)
                      ...-.-..+++.|++.+.   .++-+...   -.++.++..++... +....  ..    ..+-=|. +  -++... .+
T Consensus        96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~  175 (339)
T PF12074_consen   96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS  175 (339)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC
Confidence            011112236677777663   12211111   01111111111111 00000  00    0000000 0  022222 34


Q ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH
Q 009622          257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (530)
Q Consensus       257 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (530)
                      ++-....+.++..+..........-....+-..++.++-+.  .+.+|..|+.++..+...++..    +...++..+..
T Consensus       176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~  251 (339)
T PF12074_consen  176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWK  251 (339)
T ss_pred             HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHH
Confidence            44455566666665544332211111223456678888777  8999999999999998877753    33445666666


Q ss_pred             hhcCC
Q 009622          335 LLSGN  339 (530)
Q Consensus       335 lL~~~  339 (530)
                      ++...
T Consensus       252 ~l~~~  256 (339)
T PF12074_consen  252 WLSSS  256 (339)
T ss_pred             HHHhc
Confidence            66543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=85.92  E-value=9.9  Score=31.13  Aligned_cols=75  Identities=8%  Similarity=-0.062  Sum_probs=61.3

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC---CChHHHHHHHHHHHHHHhhhh
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~---~~~~v~~~al~~l~~ll~~~~  445 (530)
                      .+..|.+-+.++++.++..|+..|-.++.++.......+.+...+..|..++..   .++.|+..++..+...-....
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            566777888899999999999999999999887777777777888889998875   477899988888877765443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=85.84  E-value=28  Score=35.16  Aligned_cols=262  Identities=10%  Similarity=0.062  Sum_probs=123.6

Q ss_pred             CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC----CCCChhhhhchHH
Q 009622          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP  246 (530)
Q Consensus       171 ~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~~l~  246 (530)
                      +++-+.....+++..+-.+.......++.. .+..+....++..++..-.+...+++.+.+..    +.........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            455566666666665544433333333221 23333333334457777777766666665543    2222345677889


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCCCch---hHHHHHHHHhHhhcCCchhhHH
Q 009622          247 ALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHPSPS---VLIPALRTVGNIVTGDDMQTQC  322 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~---~~~~a~~~L~nl~~~~~~~~~~  322 (530)
                      .+...|..+-.+..-++...++.+.+... ....    .-....+-.++...-|.   -.-...+.|.++....+...  
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i--  194 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI--  194 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh--
Confidence            99999988878888888888888775443 1111    11222222223222222   22344556666554333322  


Q ss_pred             Hhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHhCcHHHHHHHHhcC-chhHHHHHHHHHHH
Q 009622          323 VIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE-QIQAVIEANIIGPLVALLENA-EFDIKKEAAWAISN  396 (530)
Q Consensus       323 ~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~n  396 (530)
                       ...    +++..+-+++.+. ..  -.++...|..+...-+. .....+. .++..++.-|++. ..+..+.-+..++.
T Consensus       195 -~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~  269 (435)
T PF03378_consen  195 -VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSL  269 (435)
T ss_dssp             ----S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred             -cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence             222    3445555666655 22  24566677766653332 3333332 3555555555544 56666666666666


Q ss_pred             hhcCCCHHHHHHHHH---cCChHHHHhcc------CCCChHHHHHHHHHHHHHHhhh
Q 009622          397 ATSGGTHEQIKFLVI---QGCIKPLCDLL------VCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       397 l~~~~~~~~~~~l~~---~~~l~~L~~lL------~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ++...+++..-..++   .|+...+..-+      +-..+.-+..+.-++.+++...
T Consensus       270 ~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es  326 (435)
T PF03378_consen  270 FAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES  326 (435)
T ss_dssp             HHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence            655434444444443   24333332211      1122333444555666666443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=85.71  E-value=4  Score=33.88  Aligned_cols=74  Identities=11%  Similarity=0.023  Sum_probs=61.4

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhh
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~  444 (530)
                      .+..|.+-+.++++.++..|+..|-.++.++.......+.+.+++..|..++. ..++.|+..++..+.......
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            56677778888999999999999999999887777788888899999999887 567788888888877665443

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=85.42  E-value=3.9  Score=33.52  Aligned_cols=74  Identities=14%  Similarity=0.047  Sum_probs=58.5

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhc
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--DYPQLQFEAAWALTNIAS  146 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~--~~~~i~~~a~~~L~~l~~  146 (530)
                      +++..+.+.|+++++.++..|+..|..+..+.+.+....+.....+..|+.++...  .++.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            47788888899999999999999999888776444445555557788899999763  347899999988888776

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=84.98  E-value=15  Score=29.42  Aligned_cols=74  Identities=12%  Similarity=0.257  Sum_probs=52.8

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHh-hhhccHHHHHHHhc--------CCCHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI-DDAEGLEKIESLQT--------HDNAEIYE  484 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~--------~~~~~v~~  484 (530)
                      +++.|..-|+..++.|...+|.+|..++..++..          |...+ .....+..+.+...        ..+..|..
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~----------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~  108 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD----------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVRE  108 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH----------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHH
Confidence            5677888888888999899999999999887542          23332 33334455555443        34567999


Q ss_pred             HHHHHHHHhCCCC
Q 009622          485 KSVKLLETYWLDD  497 (530)
Q Consensus       485 ~a~~il~~~~~~~  497 (530)
                      .|.+++.-.|+++
T Consensus       109 ~A~El~~~if~~~  121 (122)
T cd03572         109 EAQELIKAIFSYS  121 (122)
T ss_pred             HHHHHHHHHhccC
Confidence            9999999998864

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=84.95  E-value=9  Score=46.41  Aligned_cols=263  Identities=15%  Similarity=0.173  Sum_probs=134.3

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCC-----CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009622           84 SNDSGVQYECTTQFRKLLSIERS-----PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~-----~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      ..+++.+..+...+..++.....     +..-.. ...++..+..+-....++.++......+.      ........+.
T Consensus       492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~-v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~  564 (2341)
T KOG0891|consen  492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQV-VKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQP  564 (2341)
T ss_pred             cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHH-HHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCc
Confidence            46677777776666655543211     000000 11223333333222223555554444332      2222233444


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhc-cCCC
Q 009622          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC-RGKP  234 (530)
Q Consensus       159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~-~~~~  234 (530)
                      +.+..+...+....-.+++.+...+++++..+|.+.-.-+..    ..+..+.   .+.-. ....-+......+ ...+
T Consensus       565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~----~~l~~~s~l~~sg~~-r~~~~~a~~~~~~i~~~~  639 (2341)
T KOG0891|consen  565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK----TLLELLTELEFSGMA-RTKEESAKLLCELIISSP  639 (2341)
T ss_pred             hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH----HHHHHhchhhhcchH-HhHHHHHHHhhHHHHHHH
Confidence            555666667777778899999999999998766322111111    1111111   11100 1111111111110 0001


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhHhh
Q 009622          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIV  313 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nl~  313 (530)
                      ..........+..++..+...+..+...+..+++.|+..........++ ..++.+.+.+.. ++..-+..++++++++.
T Consensus       640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~  718 (2341)
T KOG0891|consen  640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE  718 (2341)
T ss_pred             HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence            1111223444566666777777788888888888888655433333444 455555555543 45556788999999998


Q ss_pred             cCCchhhHHHh-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009622          314 TGDDMQTQCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       314 ~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                      ........... -..++..+...+.......+|.++...++++...+
T Consensus       719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d  765 (2341)
T KOG0891|consen  719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD  765 (2341)
T ss_pred             cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence            65443221111 12355666666666656678888888888776543

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=84.78  E-value=67  Score=35.28  Aligned_cols=104  Identities=16%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009622          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK  407 (530)
Q Consensus       328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~  407 (530)
                      .+|.|++-|.......+|.+...+++.+|...-     .+-...+|.+-..|.++++-||+.+...|.++...+-.   +
T Consensus       969 ~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~v---K 1040 (1529)
T KOG0413|consen  969 LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIV---K 1040 (1529)
T ss_pred             HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhh---h
Confidence            345555555444344455555555555543211     12234678888888888888999999999998875321   1


Q ss_pred             HHHHcCC--hHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          408 FLVIQGC--IKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       408 ~l~~~~~--l~~L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                      +   .|.  +..+..++ +.+++++..+--++..++..
T Consensus      1041 w---~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1041 W---NGELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             c---chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence            1   121  33333333 34556666665555555543

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=84.35  E-value=33  Score=31.46  Aligned_cols=89  Identities=16%  Similarity=0.179  Sum_probs=52.5

Q ss_pred             CCChHHHHHhhCCCCHHH--------HHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC-chhHHHHHHHHhhh
Q 009622          158 HGAVPIFVKLLYSPSDDV--------REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWTLSN  228 (530)
Q Consensus       158 ~g~i~~L~~lL~~~~~~~--------~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~-~~~~~~~a~~~L~~  228 (530)
                      ..+++.++++++.++..+        .+....+|..+            -.|-+..|.+++.+.. +.-++.+++.+|..
T Consensus        72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~  139 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALAF  139 (249)
T ss_pred             hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            456889999997654321        11122222222            3456777777775433 67788889999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChh
Q 009622          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDE  258 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~  258 (530)
                      +....+........-.-..+...+...+..
T Consensus       140 l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~  169 (249)
T PF06685_consen  140 LVHEGPISREEVIQYFRELLNYFLERNPSF  169 (249)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence            998876555444444444444445444444

The function of this family is unknown.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.22  E-value=5  Score=36.03  Aligned_cols=84  Identities=20%  Similarity=0.267  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHhHhhcCCchhhHHHhh-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HhCc
Q 009622          300 SVLIPALRTVGNIVTGDDMQTQCVIE-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANI  371 (530)
Q Consensus       300 ~~~~~a~~~L~nl~~~~~~~~~~~~~-------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~  371 (530)
                      +-+..|+.+|+.++.... ..+.++.       ..++..|..++....++..|+-|...|.+++.++......+. +.+.
T Consensus       139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            457889999999986322 2223332       245666777777666889999999999999998776665443 6788


Q ss_pred             HHHHHHHHhcCch
Q 009622          372 IGPLVALLENAEF  384 (530)
Q Consensus       372 i~~L~~ll~~~~~  384 (530)
                      |..|+..++..+.
T Consensus       218 i~~Li~FiE~a~~  230 (257)
T PF12031_consen  218 ISHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=84.08  E-value=6.8  Score=32.34  Aligned_cols=73  Identities=18%  Similarity=0.253  Sum_probs=57.7

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..-|.++++.++..+|.+|..+++.+..          .|...+...++++.+..+..      ..++.|+++..
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~----------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil  108 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE----------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKII  108 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence            566677778899999999999999999886533          25666777777877888764      36789999999


Q ss_pred             HHHHHhCCC
Q 009622          488 KLLETYWLD  496 (530)
Q Consensus       488 ~il~~~~~~  496 (530)
                      .+++.|-..
T Consensus       109 ~li~~W~~~  117 (139)
T cd03567         109 ELLYSWTLE  117 (139)
T ss_pred             HHHHHHHHH
Confidence            999998653

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.89  E-value=14  Score=34.85  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=74.9

Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHhCcHHHHHH----HHh--------cCchhHHHHHHHH
Q 009622          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QAVIEANIIGPLVA----LLE--------NAEFDIKKEAAWA  393 (530)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i~~L~~----ll~--------~~~~~v~~~a~~a  393 (530)
                      -++|.++.++++. ++.+|..++.+|..+....+... ..+.+.|+.+.+.+    .+.        .....+-..|.-+
T Consensus       119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            3689999999998 99999999999999988543332 33556666554444    333        3356677888888


Q ss_pred             HHHhhcC-------CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          394 ISNATSG-------GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       394 L~nl~~~-------~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                      |..++..       ........++..|++..+...-+...+.++...++.+..++..
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~  254 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE  254 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence            8877431       1223344445555555544444444577877777776666644

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []

Probab=83.81  E-value=11  Score=35.20  Aligned_cols=74  Identities=9%  Similarity=0.146  Sum_probs=49.7

Q ss_pred             ChHHHHHHHHHHHHHHhhhhhhhhcCC-----CCchhhHHHhhhhccHHHHHHHhcCCCH-HHHHHHHHHHHHhCCCCCC
Q 009622          426 DPRIVTVCLEGLENILKVGEAEKNLGN-----TDVNVFTQMIDDAEGLEKIESLQTHDNA-EIYEKSVKLLETYWLDDED  499 (530)
Q Consensus       426 ~~~v~~~al~~l~~ll~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~v~~~a~~il~~~~~~~~~  499 (530)
                      |..+++.++..+.|++...+.......     ...+.+...|.+.|+++.|..+..+.++ +-.....+|+--.|-+.+.
T Consensus       133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p  212 (266)
T PF04821_consen  133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP  212 (266)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence            556999999999999987433211110     1345678888999999999999877633 3334556666666655543

This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=83.61  E-value=13  Score=28.52  Aligned_cols=93  Identities=13%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009622           88 GVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (530)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  166 (530)
                      +++..|+..+..-+... --....+. ..+++..|+++++.+. +..+..++..+..++. ++.....+.+.|++..|.+
T Consensus         2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k   78 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK   78 (98)
T ss_pred             hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence            45556665554333221 22223333 4567888999999887 5688899999999888 6777788888898888766


Q ss_pred             hhCCCCHHHHHHHHHHH
Q 009622          167 LLYSPSDDVREQAVWAL  183 (530)
Q Consensus       167 lL~~~~~~~~~~a~~~L  183 (530)
                      +=...++..+..+-.++
T Consensus        79 lr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   79 LRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHhcCCHHHHHHHHHHH
Confidence            66555666655444333

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=83.51  E-value=3.3  Score=37.12  Aligned_cols=82  Identities=15%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHH-------cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCC
Q 009622           88 GVQYECTTQFRKLLSIERSPPIEEVIR-------SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI-DHG  159 (530)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~-------~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~g  159 (530)
                      .-|..|+.+|.|+.-.+  .+++.++.       ..++..|++++....++..++-|+-.|.+++.++......+. +.+
T Consensus       139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            45788999999986543  23322222       235667788887766689999999999999998876665544 578


Q ss_pred             ChHHHHHhhCCC
Q 009622          160 AVPIFVKLLYSP  171 (530)
Q Consensus       160 ~i~~L~~lL~~~  171 (530)
                      .|..|+.++...
T Consensus       217 ~i~~Li~FiE~a  228 (257)
T PF12031_consen  217 CISHLIAFIEDA  228 (257)
T ss_pred             hHHHHHHHHHHH
Confidence            999999999653

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=83.25  E-value=22  Score=28.52  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=58.6

Q ss_pred             HHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhccCCCC---
Q 009622          351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPD---  426 (530)
Q Consensus       351 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~---  426 (530)
                      -|++++..++.....     ++..|.+-|++.++.|+..++.+|.+++..|.+++...+... ..|..+..+-...|   
T Consensus        24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~   98 (122)
T cd03572          24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK   98 (122)
T ss_pred             HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence            344444444444433     456788888888999999999999999999988877776644 34555555444233   


Q ss_pred             -----hHHHHHHHHHHHHHHh
Q 009622          427 -----PRIVTVCLEGLENILK  442 (530)
Q Consensus       427 -----~~v~~~al~~l~~ll~  442 (530)
                           ..|+..|-+++..|+.
T Consensus        99 Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          99 GDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             CcchhHHHHHHHHHHHHHHhc
Confidence                 2477777776666553

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=83.14  E-value=49  Score=32.43  Aligned_cols=157  Identities=11%  Similarity=0.078  Sum_probs=85.6

Q ss_pred             HHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc---CCC------CHHHHHHHHHHHHHH
Q 009622           75 LPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---RED------YPQLQFEAAWALTNI  144 (530)
Q Consensus        75 l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~---~~~------~~~i~~~a~~~L~~l  144 (530)
                      ...+.+.|..+. +..+...+..++ +++.+ ....+-+.....+..|..+-.   .++      +..+..+|+.||+|+
T Consensus        47 ~e~i~~Vle~~~p~t~~v~~Letvr-ILSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl  124 (532)
T KOG4464|consen   47 GERIFEVLENGEPLTHRVVCLETVR-ILSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL  124 (532)
T ss_pred             HHHHHHHHhcCCCchhhhhHHHHHH-HHhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence            345555555554 445555666666 44443 222222222222344444322   111      247889999999999


Q ss_pred             hcCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhhh-HhhcCChHHHHHhhcC-----C
Q 009622          145 ASGTSEHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDL-VLSQGGLVPLLAQLNG-----Q  213 (530)
Q Consensus       145 ~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~-i~~~~~i~~Ll~ll~~-----~  213 (530)
                      ...++..++.......+..+++.+..     ....+...-++.|.-+..-.+..|.. +...++++.+.+.+..     +
T Consensus       125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgids  204 (532)
T KOG4464|consen  125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDS  204 (532)
T ss_pred             HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCC
Confidence            99999999998888777777776632     11122233333333333333334443 4566777777777731     1


Q ss_pred             ---------CchhHHHHHHHHhhhhccCC
Q 009622          214 ---------PKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       214 ---------~~~~~~~~a~~~L~~L~~~~  233 (530)
                               .+.+....++.++.|++...
T Consensus       205 e~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  205 EINVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence                     12233445566667776665

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.00  E-value=84  Score=36.24  Aligned_cols=150  Identities=9%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh
Q 009622          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       240 ~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  319 (530)
                      ...+++|.|..-|.+++..++..|...++.+......... -.........+.-+.+....+|..++....++...++..
T Consensus       256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~  334 (1266)
T KOG1525|consen  256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI  334 (1266)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence            3467788888888899999999999999998866554322 011244556666677788889999999888887666544


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      ....   +....+..  .+. ++.+|.....++.-+..  ....-.++.. ++..+-+.+.+..+.||..|...|..+..
T Consensus       335 ~~~~---~~~~~l~~--~~~-D~~~rir~~v~i~~~~v--~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  335 AKAS---TILLALRE--RDL-DEDVRVRTQVVIVACDV--MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             hhHH---HHHHHHHh--hcC-ChhhhheeeEEEEEeeh--hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            3221   11222222  222 44444433222221111  0111112222 55566666777789999999988887765

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.58  E-value=12  Score=28.60  Aligned_cols=69  Identities=17%  Similarity=0.216  Sum_probs=55.4

Q ss_pred             cCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009622          412 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE  491 (530)
Q Consensus       412 ~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~  491 (530)
                      ...+..|+.-...+++.....++..+..+++....            ...+.+.|+.+-+.++...-+++.+.....|++
T Consensus        29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~   96 (98)
T PF14726_consen   29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD   96 (98)
T ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            35677777777777777788888889888876543            667888999999999999999999999888886


Q ss_pred             H
Q 009622          492 T  492 (530)
Q Consensus       492 ~  492 (530)
                      .
T Consensus        97 ~   97 (98)
T PF14726_consen   97 Q   97 (98)
T ss_pred             c
Confidence            4

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=82.57  E-value=82  Score=34.64  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHh
Q 009622          172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL  251 (530)
Q Consensus       172 ~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l  251 (530)
                      .+.++.++.-+|+++|--.....+     ..+|.|++-|..+....++.+.+-+++-+|...    ..+....+|.+...
T Consensus       944 ~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen  944 SDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence            346788888999999855443322     268889999977888888888888888887653    23456788999999


Q ss_pred             hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009622          252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (530)
Q Consensus       252 l~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~  313 (530)
                      |..+++-|+..++..|.+|....--.    ....++-+++..+-+.++.++..|=.+++.+.
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence            99999999999999999987543211    11122333444444566677777766666664

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=81.64  E-value=35  Score=29.90  Aligned_cols=71  Identities=21%  Similarity=0.263  Sum_probs=55.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  193 (530)
                      .++.++++..+++ ..++..|+.++.-+....--+-.     ..+|.|+.+..++++.++..|...+..+..-.+.+
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            4667777777777 89999999999888774322211     24799999999999999999999999998665544

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=81.60  E-value=19  Score=40.29  Aligned_cols=236  Identities=17%  Similarity=0.174  Sum_probs=129.2

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHH--------HhhcCCCCHHHHHHHHHHHHHHh
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV--------EFLLREDYPQLQFEAAWALTNIA  145 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv--------~ll~~~~~~~i~~~a~~~L~~l~  145 (530)
                      .+..|++.+-++.+++|.-++.+++.++.......-...++.-++..+.        +++...--..+++.++|+|+.+.
T Consensus        78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l  157 (1549)
T KOG0392|consen   78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL  157 (1549)
T ss_pred             HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence            5677778888999999999999999998765322222222222222111        11111112368899999999888


Q ss_pred             cCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh--cCChHHHHHhhcCCCchhHHHHHH
Q 009622          146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNAT  223 (530)
Q Consensus       146 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~--~~~i~~Ll~ll~~~~~~~~~~~a~  223 (530)
                      ..-.....    ...+..+.+++..+..+++...+..+.....   ..++.+..  ..++...+.-+ .+.+..++..|.
T Consensus       158 ~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa  229 (1549)
T KOG0392|consen  158 KHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA  229 (1549)
T ss_pred             HhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence            74322211    1346778888887777777766655543321   11122110  01233344444 566778888888


Q ss_pred             HHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh-h-HHHHHHHHHHHhccCChH---HHHHHHHhCcHHHHHHhhCCCC
Q 009622          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD-E-VLTDACWALSYLSDGTND---KIQAVIEAGVFPRLAEFLMHPS  298 (530)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~-~-v~~~a~~~l~~l~~~~~~---~~~~~~~~~~i~~L~~lL~~~~  298 (530)
                      .++.-...............++..+..++..-|. . -.......+..++...+.   ..+.-...|+++.+..++.+.=
T Consensus       230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i  309 (1549)
T KOG0392|consen  230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI  309 (1549)
T ss_pred             HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence            8777666554333333334444444444332221 0 001111122222222210   0111123488999999998887


Q ss_pred             chhHHHHHHHHhHhhcCCc
Q 009622          299 PSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       299 ~~~~~~a~~~L~nl~~~~~  317 (530)
                      ..++..++..+..+....+
T Consensus       310 ~sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  310 SSVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            7888888888888876443

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=81.40  E-value=70  Score=33.08  Aligned_cols=147  Identities=12%  Similarity=-0.009  Sum_probs=85.4

Q ss_pred             chhHHHHHHHHH---HHHhcC-CHHH---HHHHHHhCcHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009622          341 KKSIKKEACWTV---SNITAG-NREQ---IQAVIEANIIGPLVA----LLENAEFDIKKEAAWAISNATSGGTHEQIKFL  409 (530)
Q Consensus       341 ~~~v~~~a~~~L---~nl~~~-~~~~---~~~l~~~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  409 (530)
                      ...++..+...+   .....+ .+..   +...+..++.|.+-.    -....+...|..+..+|+.++.....-..   
T Consensus       334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~---  410 (501)
T PF13001_consen  334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS---  410 (501)
T ss_pred             ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc---
Confidence            345666665555   444442 2222   233334455554410    01123678999999999999987532211   


Q ss_pred             HHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHH
Q 009622          410 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL  489 (530)
Q Consensus       410 ~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~i  489 (530)
                      -+-+.+..|.+-|+.++++++..+-++|..++.........   ........+     ...+.....+....++..|.+-
T Consensus       411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~---~~~~~~~~~-----~~l~~~~~~~~~~~~R~~avk~  482 (501)
T PF13001_consen  411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD---EDEQKRLLL-----ELLLLSYIQSEVRSCRYAAVKY  482 (501)
T ss_pred             ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc---hhHHHHHHH-----HHHHHhhccchhHHHHHHHHHH
Confidence            13367888888888899999999999999998765442210   000000000     1112222345566678888888


Q ss_pred             HHHhCCCCC
Q 009622          490 LETYWLDDE  498 (530)
Q Consensus       490 l~~~~~~~~  498 (530)
                      .++.|+.++
T Consensus       483 an~~fpf~d  491 (501)
T PF13001_consen  483 ANACFPFSD  491 (501)
T ss_pred             HHHhCCccc
Confidence            888888655

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=81.13  E-value=32  Score=37.13  Aligned_cols=90  Identities=21%  Similarity=0.201  Sum_probs=52.7

Q ss_pred             CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHH-----HHHHHHHHHHhcCCHHHHHH-HHHhCc
Q 009622          298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK-----KEACWTVSNITAGNREQIQA-VIEANI  371 (530)
Q Consensus       298 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~-----~~a~~~L~nl~~~~~~~~~~-l~~~~~  371 (530)
                      +++++.+|+.+|-|+++..+......+        ..+...+.++...     +.+  .|-+.    -.+... +...+.
T Consensus       675 Dpei~~~AL~vIincVc~pp~~r~s~i--------~~v~S~~g~~r~~l~~~~ks~--~le~~----l~~mw~~Vr~ndG  740 (1516)
T KOG1832|consen  675 DPEIIQPALNVIINCVCPPPTTRPSTI--------VAVGSQSGDRRIFLGAGTKSA--KLEQV----LRQMWEAVRGNDG  740 (1516)
T ss_pred             CHHHHHHHHhhhheeecCCCCcchhhh--------hhccccCCCccccccCCCchH--HHHHH----HHHHHHHHhcCcc
Confidence            678999999999999988765442222        1222211121110     000  00000    111122 224578


Q ss_pred             HHHHHHHHhcCc-----hhHHHHHHHHHHHhhcCC
Q 009622          372 IGPLVALLENAE-----FDIKKEAAWAISNATSGG  401 (530)
Q Consensus       372 i~~L~~ll~~~~-----~~v~~~a~~aL~nl~~~~  401 (530)
                      |..|+.+|+...     ..+|.-|+.+|.-|+...
T Consensus       741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~  775 (1516)
T KOG1832|consen  741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDD  775 (1516)
T ss_pred             HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc
Confidence            999999998653     469999999999999864

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=81.12  E-value=31  Score=35.69  Aligned_cols=174  Identities=13%  Similarity=0.024  Sum_probs=99.6

Q ss_pred             CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--C---------CChhHHHHHHHHHHHhccCChHHHHHH
Q 009622          213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--S---------NDDEVLTDACWALSYLSDGTNDKIQAV  281 (530)
Q Consensus       213 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--~---------~d~~v~~~a~~~l~~l~~~~~~~~~~~  281 (530)
                      +++.++...+-..|-.+...      .....++..|..+..  .         -++.++..++..|+.-..      ...
T Consensus       248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa~  315 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AAT  315 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HHh
Confidence            44555666666666555544      112344555555444  1         245566665555544210      001


Q ss_pred             HHhCcHHHHHHhhCCC--CchhHHHHHHHH---hHhhcCCchhhHHHhhcCchHHHHHhhc-------CCCchhHHHHHH
Q 009622          282 IEAGVFPRLAEFLMHP--SPSVLIPALRTV---GNIVTGDDMQTQCVIEYQALPCLLNLLS-------GNYKKSIKKEAC  349 (530)
Q Consensus       282 ~~~~~i~~L~~lL~~~--~~~~~~~a~~~L---~nl~~~~~~~~~~~~~~~~l~~L~~lL~-------~~~~~~v~~~a~  349 (530)
                      .-..++..+..-+.+.  +..++..++..+   ...........-..+...+...+.+.+.       ...+...|..+.
T Consensus       316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY  395 (501)
T PF13001_consen  316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY  395 (501)
T ss_pred             CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence            1113333344445555  566777777777   5555544433223333334444444442       111668899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      .+||.++...+....  -+-+++..|++-|..++++++..+-.||..++..
T Consensus       396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a  444 (501)
T PF13001_consen  396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA  444 (501)
T ss_pred             HHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence            999999987665431  1345788888888888899999999999988763

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=81.08  E-value=15  Score=34.61  Aligned_cols=74  Identities=19%  Similarity=0.227  Sum_probs=55.6

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh----ccC--------CCChHHHHHHHHHHH
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD----LLV--------CPDPRIVTVCLEGLE  438 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~----lL~--------~~~~~v~~~al~~l~  438 (530)
                      ++|.++.++++.++.+|..++.+|..+...........+.+.|..+.+.+    ++.        .+...+...+..++.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            78999999999999999999999999998765444334566776554433    333        345568888888888


Q ss_pred             HHHhhh
Q 009622          439 NILKVG  444 (530)
Q Consensus       439 ~ll~~~  444 (530)
                      .++...
T Consensus       200 ~L~~~~  205 (282)
T PF10521_consen  200 SLLKTQ  205 (282)
T ss_pred             HHHHhh
Confidence            887654

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=80.78  E-value=58  Score=31.72  Aligned_cols=255  Identities=14%  Similarity=0.141  Sum_probs=129.4

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhc
Q 009622          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (530)
Q Consensus       164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  243 (530)
                      ++...+ ....-++.|...|.+...+-|...+.     ++..-+.++ .+.+..+++.|+.-|-.+|.++      ....
T Consensus        30 il~~~k-~~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~r   96 (460)
T KOG2213|consen   30 ILKAVK-GTSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSR   96 (460)
T ss_pred             HHHHhh-cchHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhh
Confidence            344443 34556777888888887777765444     666777888 7889999999999999999883      2223


Q ss_pred             hHHHHHHhhc------------CCChhHHHHHHHHHHH-hccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622          244 ALPALAHLIH------------SNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       244 ~l~~L~~ll~------------~~d~~v~~~a~~~l~~-l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~  310 (530)
                      +.+.|+++|.            ..|..+++.++..|.. +..-..+....-++..++..+...|.+-...-....+..|+
T Consensus        97 v~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~  176 (460)
T KOG2213|consen   97 VNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILA  176 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3344444432            2356666666555532 22333333333344445555555555544444444555566


Q ss_pred             HhhcCC----chhhHHHhhcCchHHHHHh--hcCCCchhHHHHHH----HHHHHHhcCCHHH-HHHHHHhCcHHHHHHHH
Q 009622          311 NIVTGD----DMQTQCVIEYQALPCLLNL--LSGNYKKSIKKEAC----WTVSNITAGNREQ-IQAVIEANIIGPLVALL  379 (530)
Q Consensus       311 nl~~~~----~~~~~~~~~~~~l~~L~~l--L~~~~~~~v~~~a~----~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll  379 (530)
                      ++....    ....+.+.+  ...-+..+  +.-+ +++....-.    .++--++.+-+.. .-..+...++|.-   .
T Consensus       177 ~lk~~~~k~~~a~lqeLa~--~~e~~a~ldaf~~s-D~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~---f  250 (460)
T KOG2213|consen  177 SLKSLQTKAGEARLQELAE--EQEGLADLDAFNVS-DADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHH---F  250 (460)
T ss_pred             hhhcccCCCCHHHHHHHHH--HHhhhhccCcccCC-ChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccc---c
Confidence            554432    111122211  01111111  2222 333332222    2222233332221 1122233444440   1


Q ss_pred             hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC------CCChHHHHHHHHHHHHHHh
Q 009622          380 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV------CPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       380 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~------~~~~~v~~~al~~l~~ll~  442 (530)
                      .-...+.+...+.+|..|+...+.+....     .++.++++|.      ..-++....-++++.+++.
T Consensus       251 dkl~e~rkL~lLK~lAEMss~ttaq~a~q-----~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h  314 (460)
T KOG2213|consen  251 DKLTEERKLDLLKALAEMSSYTTAQAARQ-----MLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALH  314 (460)
T ss_pred             ccchHHHHHHHHHHHHHhCccchHHHHHH-----HHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHH
Confidence            11125788888999999988765544444     3555555553      2233455555555555543

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=80.31  E-value=38  Score=29.39  Aligned_cols=84  Identities=19%  Similarity=0.217  Sum_probs=60.9

Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009622          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~  317 (530)
                      ......+|.+..-+...+.....-|...+..+... ..+.+-.++. .++..+-..|.+.++.+...++.+|..++...+
T Consensus        34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~  112 (183)
T PF10274_consen   34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSD  112 (183)
T ss_pred             cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            33467899999988887777666777777777655 4444443333 567778888999999999999999999977665


Q ss_pred             hhhHHH
Q 009622          318 MQTQCV  323 (530)
Q Consensus       318 ~~~~~~  323 (530)
                      ..-..+
T Consensus       113 ~vG~aL  118 (183)
T PF10274_consen  113 MVGEAL  118 (183)
T ss_pred             hhhHHH
Confidence            444443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)

Probab=80.29  E-value=7.4  Score=28.15  Aligned_cols=52  Identities=23%  Similarity=0.416  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ..++++|..|-....            -.+.+...+....+..|..|++++|...|..++..|-
T Consensus        19 ~~~l~~L~~L~~~~~------------t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK   70 (75)
T smart00509       19 SRCLDILKKLKKLPI------------TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK   70 (75)
T ss_pred             HHHHHHHHHHhcCCC------------CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            345666665554332            2677778888888999999999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	530
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-139
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-132
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-132
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-130
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-130
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-129
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-128
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-128
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-128
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-119
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-114
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-114
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-114
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-114
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-114
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-114
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-113
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-113
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-113
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-113
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-113
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-113
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-113
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-113
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-112
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-36
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-29
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-29
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-28
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		9e-27
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-25
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-22
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-20
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		3e-04
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		3e-04
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		3e-04
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		3e-04
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		4e-04
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		4e-04
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		4e-04
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		4e-04
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		4e-04
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		4e-04
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		4e-04
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		5e-04
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		5e-04
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		8e-04

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/502 (80%), Positives = 452/502 (90%), Gaps = 1/502 (0%)
Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 63  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 181
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241
Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301
Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361
Query: 361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 420
           +QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIK+LV +GCIKPLCD
Sbjct: 362 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 421
Query: 421 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 480
           LL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+QMID+AEGLEKIE+LQ+HDN 
Sbjct: 422 LLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN 481
Query: 481 EIYEKSVKLLETYWLDDEDETM 502
           EIYEK+VK+LE YW+D+ED+TM
Sbjct: 482 EIYEKAVKILEAYWMDEEDDTM 503

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/462 (77%), Positives = 405/462 (87%), Gaps = 1/462 (0%)
Query: 41  REESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKL 100
           +E +  K  R+ + +   L  D +    A    +LP M+ GV+S+D+ +Q E TTQFRKL
Sbjct: 5   KETAAAKFERQHMDSPD-LGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKL 63
Query: 101 LSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160
           LSIERSPPIEEVI+SGVVPRFV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGA
Sbjct: 64  LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
           VPIFVKLL S SDDVREQAVWALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLR
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280
           NATWTLSNFCRGKPQP F+Q  PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQA
Sbjct: 184 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 243
Query: 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340
           VIEAGV PRL E L+HPSPSVLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N 
Sbjct: 244 VIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL 303
Query: 341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400
           KKSIKKEACWT+SNITAGN++QIQAVI A IIGPLV LL+ AEFDIKKEAAWAISNATSG
Sbjct: 304 KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 363
Query: 401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQ 460
           G+H+QIK+LV +GCIKPLCDLL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+Q
Sbjct: 364 GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQ 423
Query: 461 MIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETM 502
           MID+AEGLEKIE+LQ+HDN EIYEK+VK+LE YW+D+ED+TM
Sbjct: 424 MIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM 465

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  492 bits (1266), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/517 (53%), Positives = 355/517 (68%), Gaps = 19/517 (3%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRR-----EGLQNQQPL 59
           P  +  + +NK + +  ADE RRRR+   VE+RK KR+E+L K+R      +G  + +  
Sbjct: 14  PEYRRTNFKNKGRFS--ADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71
Query: 60  ANDVNAPGT--AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
            + V+A     ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131
Query: 118 VPRFVEFLLREDYPQ-LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           VPR VEF+ RE+ P+ LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+
Sbjct: 132 VPRLVEFM-RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQ 235
           EQA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRG KPQ
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQ 249
Query: 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
           P +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L 
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309
Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           H S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNI
Sbjct: 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNI 368
Query: 356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQG 413
           TAGN EQIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QG
Sbjct: 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428
Query: 414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES 473
           CIKPLCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI +
Sbjct: 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488
Query: 474 LQTHDNAEIYEKSVKLLETYWLDDE---DETMPPGDA 507
            Q ++N +IYEK+ K++ETY+ ++E   DETM P +A
Sbjct: 489 CQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNA 525

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/427 (58%), Positives = 309/427 (72%), Gaps = 4/427 (0%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435
           +++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 436 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 494
           GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 381 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 440
Query: 495 LDDEDET 501
            +DED +
Sbjct: 441 TEDEDSS 447

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/427 (58%), Positives = 309/427 (72%), Gaps = 4/427 (0%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ VI+ANI   L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 376 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 435
           +++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 436 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 494
           GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 384 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443
Query: 495 LDDEDET 501
            +DED +
Sbjct: 444 TEDEDSS 450

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/440 (57%), Positives = 314/440 (71%), Gaps = 10/440 (2%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 359 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 491 ETYWLDDE---DETMPPGDA 507
           ETY+ ++E   DETM P +A
Sbjct: 419 ETYFGEEEDAVDETMAPQNA 438

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/440 (57%), Positives = 314/440 (71%), Gaps = 10/440 (2%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 359 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 491 ETYWLDDE---DETMPPGDA 507
           ETY+ ++E   DETM P +A
Sbjct: 419 ETYFGEEEDAVDETMAPQNA 438

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  457 bits (1177), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/424 (58%), Positives = 304/424 (71%), Gaps = 7/424 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 358 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 491 ETYW 494
           ETY+
Sbjct: 418 ETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/424 (57%), Positives = 304/424 (71%), Gaps = 7/424 (1%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN+I
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
            V L+ LENI+K+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K++
Sbjct: 358 EVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 491 ETYW 494
           ETY+
Sbjct: 418 ETYF 421

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/426 (57%), Positives = 304/426 (71%), Gaps = 7/426 (1%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPR 428
           +I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357
Query: 429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK 488
           I+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K
Sbjct: 358 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 489 LLETYW 494
           ++ETY+
Sbjct: 418 IIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/426 (57%), Positives = 304/426 (71%), Gaps = 7/426 (1%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEAN 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQAVI+AN
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPR 428
           +I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLCDLL   D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357
Query: 429 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK 488
           I+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N +IYEK+ K
Sbjct: 358 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 489 LLETYW 494
           ++ETY+
Sbjct: 418 IIETYF 423

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  426 bits (1096), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/517 (46%), Positives = 329/517 (63%), Gaps = 25/517 (4%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL---QNQQPLAN 61
           P ++ +  +NK K   D+ E RRRR +  VE+RK K++E + K+R           PL  
Sbjct: 10  PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62  DVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+
Sbjct: 67  NRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 123
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAV
Sbjct: 124 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 183
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-P 234
           WALGNIAG     RDLV+  G + PLLA L   P LS      LRN TWTLSN CR K P
Sbjct: 184 WALGNIAGAGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNP 242
Query: 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
            PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L
Sbjct: 243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302
Query: 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
                 ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SN
Sbjct: 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSN 361
Query: 355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC 414
           ITAG ++QIQ V+   ++  LV +L  A+F  +K AAWAI+N TSGGT EQI +LV  G 
Sbjct: 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421
Query: 415 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL 474
           I+PL +LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+L
Sbjct: 422 IEPLMNLLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEAL 476
Query: 475 QTHDNAEIYEKSVKLLETYWL--DDEDETMPPGDASQ 509
           Q H+N  +Y+ S+ L+E Y+   ++ED+ + P   S+
Sbjct: 477 QRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE 513

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 420 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 475 KYFSVEEEE 483

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 168 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 226
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 345
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 346 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 405
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 406 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 460
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 461 KYFSVEEEE 469

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 420 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 475 KYFSVEEEE 483

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 420 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 475 KYFSVEEEE 483

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/440 (49%), Positives = 293/440 (66%), Gaps = 15/440 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 370 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 492 TYWL--DDEDETMPPGDASQ 509
            Y+   ++ED+ + P   S+
Sbjct: 425 KYFSVEEEEDQNVVPETTSE 444

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 288/429 (67%), Gaps = 13/429 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 138 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 376 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430
Query: 492 TYWLDDEDE 500
            Y+  +E+E
Sbjct: 431 KYFSVEEEE 439

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/444 (49%), Positives = 293/444 (65%), Gaps = 17/444 (3%)
Query: 58  PLANDVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
           PL  + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G
Sbjct: 20  PLQENRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 76
Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++P+FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + 
Sbjct: 77  LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 136
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCR 231
           EQAVWALGNIAGD    RDLV+  G + PLLA L   P LS      LRN TWTLSN CR
Sbjct: 137 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCR 195
Query: 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290
            K P PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L
Sbjct: 196 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 255
Query: 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350
            + L      ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA W
Sbjct: 256 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATW 314
Query: 351 TVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV 410
           T+SNITAG ++QIQ V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV
Sbjct: 315 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 374
Query: 411 IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK 470
             G I+PL +LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+K
Sbjct: 375 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDK 429
Query: 471 IESLQTHDNAEIYEKSVKLLETYW 494
           IE+LQ H+N  +Y+ S+ L+E Y+
Sbjct: 430 IEALQRHENESVYKASLNLIEKYF 453

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 166 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 224
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 343
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 344 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 403
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 404 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 458
Query: 492 TYW 494
            Y+
Sbjct: 459 KYF 461

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  406 bits (1043), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 365 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419
Query: 492 TYW 494
            Y+
Sbjct: 420 KYF 422

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 365 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419
Query: 492 TYW 494
            Y+
Sbjct: 420 KYF 422

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 370 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 492 TYW 494
            Y+
Sbjct: 425 KYF 427

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 369 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423
Query: 492 TYW 494
            Y+
Sbjct: 424 KYF 426

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 369 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423
Query: 492 TYW 494
            Y+
Sbjct: 424 KYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 284/423 (67%), Gaps = 13/423 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 491
           V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E
Sbjct: 370 VILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 492 TYW 494
            Y+
Sbjct: 425 KYF 427

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/433 (49%), Positives = 286/433 (66%), Gaps = 21/433 (4%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ S++   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P +S      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 133 IKYGAVDPLLALL-AVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRL 191
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H +D EVL D CWA+SYL+DG N++I  V++ GV P+L + L      ++ PALR +GN
Sbjct: 192 LHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGN 251
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   +
Sbjct: 252 IVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 310
Query: 372 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 431
           +  LV++L  A+F  +KEA WA++N TSGGT EQI +LV  G I+PL +LL   D +I+ 
Sbjct: 311 VPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIIL 370
Query: 432 VCLEGLENIL----KVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 487
           V L+ + NI     K+GE EK          + MI++  GL+KIE+LQ H+N  +Y+ S+
Sbjct: 371 VILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQNHENESVYKASL 421
Query: 488 KLLETYWLDDEDE 500
            L+E Y+  +E+E
Sbjct: 422 SLIEKYFSVEEEE 434

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/248 (39%), Positives = 142/248 (57%), Gaps = 15/248 (6%)
Query: 245 LPALAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
           LP +   ++S+D +    A    S  LSDG N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           QAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483
            P+ +I+   L  L NI   G  +K           Q + +A  LEK+E LQ+H+N +I 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK-----------QAVKEAGALEKLEQLQSHENEKIQ 239
Query: 484 EKSVKLLE 491
           +++ + LE
Sbjct: 240 KEAQEALE 247

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 2/196 (1%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424
           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G    L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGAEPALEQLQSS 191
Query: 425 PDPRIVTVCLEGLENI 440
           P+ +I     E LE I
Sbjct: 192 PNEKIQKEAQEALEKI 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 112/196 (57%), Gaps = 2/196 (1%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 424
           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 425 PDPRIVTVCLEGLENI 440
            + +I     E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 115/205 (56%), Gaps = 13/205 (6%)
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P++ + L  P    L  ALR +  I +G + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
           EA W +SNI +G  EQIQAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE 466
           + ++  G +  L  LL  P+ +I+   L  L NI   G  +K           Q + +A 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-----------QAVKEAG 180
Query: 467 GLEKIESLQTHDNAEIYEKSVKLLE 491
            LEK+E LQ+H+N +I +++ + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  118 bits (295), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 4/197 (2%)
Query: 245 LPALAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
           LP +   ++S+D +    A    S  LSDG N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           QAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 424 CPDPRIVTVCLEGLENI 440
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 13/205 (6%)
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P++ + L        + A R    I++  + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
           EA W +SNI +G  EQIQAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 407 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE 466
           + ++  G +  L  LL  P+ +I+   L  L NI   G  +K           Q + +A 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-----------QAVKEAG 180
Query: 467 GLEKIESLQTHDNAEIYEKSVKLLE 491
            LEK+E LQ+H+N +I +++ + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 44/284 (15%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V + V+ L   D  + Q EAA  L  IASG +   K ++D G V + VKLL S   +V++
Sbjct: 4   VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +A  AL NIA         ++  GG V +L +L                           
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGG-VEVLVKL--------------------------- 94
Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                         + S D EV  +A  AL+ ++ G ++ I+A+++AG    L + L   
Sbjct: 95  --------------LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 140
Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A R + NI +G D   + +++   +  L+ LL+ +    ++KEA   ++NI +
Sbjct: 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIAS 199
Query: 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG 401
           G    I+A+++A  +  L  LL + + +++KEA  A+ N  SGG
Sbjct: 200 GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 9/240 (3%)
Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHSNDDEVL 260
           LV LL   + + +    + A   L+    G P      +  A  +  L  L+ S D EV 
Sbjct: 7   LVKLLTSTDSETQ----KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
            +A  AL+ ++ G ++ I+A+++AG    L + L      V   A R + NI +G D   
Sbjct: 62  KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380
           + +++   +  L+ LL+ +    ++KEA   ++NI +G  E I+A+++A  +  LV LL 
Sbjct: 122 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 381 NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
           + + +++KEAA A++N  SG T   IK +V  G ++ L  LL   D  +       LENI
Sbjct: 181 STDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 51  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 107
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 166
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 225
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 281
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 55  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 111
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 112 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 170
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 171 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 229
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 230 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 285
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 286 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 340

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 57  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 113
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 114 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 172
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 173 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 231
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 232 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 287
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 288 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 342

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 52  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 108
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 109 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 167
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 168 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 226
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 227 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 282
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 283 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 337

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 58  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 114
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 115 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 173
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 174 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 232
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 233 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 288
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 289 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 343

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 56  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 112
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 113 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 171
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 172 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 230
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 231 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 286
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 287 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 341

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 56  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 112
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 113 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 171
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 172 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 230
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 231 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 286
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 287 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 341

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 52  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 108
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 109 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 167
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 168 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 226
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 227 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 282
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 283 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 337

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 54  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 110
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 169
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 228
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 284
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 41  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 97
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 98  GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 156
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 157 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 215
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 216 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 271
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 272 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 326

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 39  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 95
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 96  GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 154
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 155 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 213
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 214 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 269
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 270 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 324

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 39  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 95
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 96  GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 154
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 155 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 213
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 214 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 269
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 270 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 324

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A          S H +    +   G +P  VK+L
Sbjct: 43  IMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML 99
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 100 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 158
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 159 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 217
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 218 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 273
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 274 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 328

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 16/295 (5%)
Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK---VVIDHGAVPIFVKLL 168
           ++RS   P+ V  ++R        E A   +      S H +    +   G +P  V +L
Sbjct: 187 IMRS---PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243
Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
            SP D V   A+  L N+       +  V   GGL  ++A LN +  +  L   T  L  
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQI 302
Query: 229 FCRGKPQPPFDQVSPALP-ALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGV 286
              G  +     ++   P AL +++ +   E +L      L  LS  +++K  A++EAG 
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGG 361
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   L  PS  ++   L T+ N+    D  T+       L  L+ LL G+   ++  
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLL-GSDDINVVT 417
Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS 399
            A   +SN+T  N +    V +   I  LV  +  A    DI + A  A+ + TS
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	530
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	0.0
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-53
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-114
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-68
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-61
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-54
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-25
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-112
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-83
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-75
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-69
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-61
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-57
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-89
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-11
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-85
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-55
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-50
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-78
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-66
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-75
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-28
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-64
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-27
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-26
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-60
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-55
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-53
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-32
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-59
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-29
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-25
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-23
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-47
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	9e-40
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-41
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-40
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-19
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-38
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-20
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	6e-07
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	4e-13
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-13
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-11
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-10
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	8e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	9e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	9e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	7e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	9e-09
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	7e-08
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  603 bits (1555), Expect = 0.0
 Identities = 268/521 (51%), Positives = 340/521 (65%), Gaps = 14/521 (2%)

Query: 7   SKADSRRNKYK--VAVDADEGRRRREDNMVEIRKNKREESLQKKRR-------EGLQNQQ 57
              + RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             + 
Sbjct: 12  FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71

Query: 58  PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             +   +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           VPR VEF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRGK PQP
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQP 250

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
            S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNIT
Sbjct: 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNIT 369

Query: 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGC 414
           AGN EQIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGC
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429

Query: 415 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL 474
           IKPLCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + 
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC 489

Query: 475 QTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFG 515
           Q ++N +IYEK+ K++ETY+ ++ED           G  FG
Sbjct: 490 QQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNAGNTFG 530

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  573 bits (1479), Expect = 0.0
 Identities = 228/514 (44%), Positives = 307/514 (59%), Gaps = 18/514 (3%)

Query: 23  DEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV 82
             G   R   M E    K E         G  +      D+ +        ++  +V G+
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSN-QGTVNWSVEDIVKGI 66

Query: 83  WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT 142
            SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+AWALT
Sbjct: 67  NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 126

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202
           NIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV+  G 
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186

Query: 203 LVPLLAQLNG----QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDD 257
           + PLLA L            LRN TWTLSN CR K P PP D V   LP L  L+H ND 
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GNIVTG D
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377
            QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+   ++  LV 
Sbjct: 307 EQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365

Query: 378 LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGL 437
           +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I+ V L+ +
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425

Query: 438 ENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW--L 495
            NI +  E        +    + MI++  GL+KIE+LQ H+N  +Y+ S+ L+E Y+   
Sbjct: 426 SNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480

Query: 496 DDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 529
           ++ED+ + P   S+ GF F          G FNF
Sbjct: 481 EEEDQNVVPETTSE-GFAFQV---QDGAPGTFNF 510

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  563 bits (1452), Expect = 0.0
 Identities = 253/445 (56%), Positives = 316/445 (71%), Gaps = 3/445 (0%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GV 117
               +N    A        M+  ++S     Q   T +FRKLLS E +PPI+EVI + GV
Sbjct: 6   HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V RFVEFL R++   LQFE+AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+E
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QAVWALGNIAGDS  CRD VL    L PLL   + Q +L+M RNA W LSN CRGK P P
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F +VSP L  L+ L+  +D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
               V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS + K+SIKKEACWT+SNIT
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIKKEACWTISNIT 304

Query: 357 AGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK 416
           AGNR QIQ VI+ANI   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIK
Sbjct: 305 AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364

Query: 417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 476
           PLCDLL   D +IV V L GLENIL++GE E     T +N +  +I++A GL+KIE LQ+
Sbjct: 365 PLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQS 424

Query: 477 HDNAEIYEKSVKLLETYWLDDEDET 501
           H+N EIY+K+  L+E Y+  +++++
Sbjct: 425 HENQEIYQKAFDLIEHYFGTEDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  185 bits (470), Expect = 5e-53
 Identities = 61/354 (17%), Positives = 134/354 (37%), Gaps = 19/354 (5%)

Query: 143 NIASGTSEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIA--GDSPRCRDLVL 198
            +    ++   + +          +++++S S + +  A      +     +P   +++ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDD 257
           + G +   +  L  +   ++   + W L+N   G          + A+P    L+ S  +
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGD 316
           +V   A WAL  ++  +      V++  + P L +     +  ++   A+  + N+  G 
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLV 376
               +       L  L  LL       +  +ACW +S ++ G  ++IQAVI+A +   LV
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240

Query: 377 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG 436
            LL + ++ +   A  A+ N  + G   Q + ++    ++ L  LL  P   I       
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299

Query: 437 LENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
           + NI     A+            Q + DA     + S+         +++   +
Sbjct: 300 ISNITAGNRAQI-----------QTVIDANIFPALISILQTAEFRTRKEAAWAI 342

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  350 bits (899), Expect = e-114
 Identities = 72/440 (16%), Positives = 132/440 (30%), Gaps = 24/440 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 115

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNRE---QIQAVIEAN 370
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E      AV    
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352

Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            +  +V LL         +A   +    +         L  QG I  L  LLV       
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQ 411

Query: 431 TVCLEGLENILKVGEAEK------------NLGNTDVNVFTQMIDDAEGLEKIESLQTHD 478
                G      V                  L     N    +I     +     L    
Sbjct: 412 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSP 469

Query: 479 NAEIYEKSVKLLETYWLDDE 498
              I   +  +L     D E
Sbjct: 470 IENIQRVAAGVLCELAQDKE 489

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  230 bits (589), Expect = 3e-68
 Identities = 58/383 (15%), Positives = 133/383 (34%), Gaps = 20/383 (5%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 123

Query: 228 NFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +         +  L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 242

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
              WT+ N++    +Q        ++G LV LL + + ++   AA  +SN T     +  
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 298

Query: 407 KFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 464
             +   G I+ L   ++       I    +  L ++           + +  +    +  
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS--------RHQEAEMAQNAVRL 350

Query: 465 AEGLEKIESLQTHDNAEIYEKSV 487
             GL  +  L    +     K+ 
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  212 bits (541), Expect = 2e-61
 Identities = 58/343 (16%), Positives = 112/343 (32%), Gaps = 18/343 (5%)

Query: 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209
                 +   A+P   KLL      V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269
           +     +   R    TL N    +        S  +PAL  ++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
           L         AV  AG   ++   L   +   L      +  +  G+      ++     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389
             L+N++     + +       +  + +       A++EA  +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 390 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 449
             W + N +   T +      ++G +  L  LL   D  +VT     L N+       K 
Sbjct: 244 CLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK- 298

Query: 450 LGNTDVNVFTQMIDDAEGLEKI--ESLQTHDNAEIYEKSVKLL 490
                      M+    G+E +    L+  D  +I E ++  L
Sbjct: 299 ----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  193 bits (491), Expect = 2e-54
 Identities = 60/364 (16%), Positives = 123/364 (33%), Gaps = 33/364 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL-HLTDPSQRLV 241

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP----ALPALA 249
            +V   GG+  L+  +     +  +   A   L +      +    Q +      LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 310 GNIVTGDDMQTQCVIEY---------------------QALPCLLNLLSGNYKKSIKKEA 348
                 + ++ + ++E                        +P  + LL  +  ++I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVA 477

Query: 349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 408
              +  + A ++E  +A+       PL  LL +    +   AA  +   +     +  K 
Sbjct: 478 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 536

Query: 409 LVIQ 412
           L ++
Sbjct: 537 LSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  108 bits (270), Expect = 5e-25
 Identities = 32/218 (14%), Positives = 80/218 (36%), Gaps = 16/218 (7%)

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N +  A +     P L + L      V+  A   V  +   +  +   +   Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
            +         +    T+ N+ + +RE + A+ ++  I  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 395 SNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT 453
            N       E  K  V   G ++ +  LL   + + + +  + L+ +    +  K     
Sbjct: 123 HNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK----- 175

Query: 454 DVNVFTQMIDDAEGLEK-IESLQTHDNAEIYEKSVKLL 490
                  +I  + G +  +  ++T+   ++   + ++L
Sbjct: 176 ------LIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  342 bits (880), Expect = e-112
 Identities = 72/440 (16%), Positives = 132/440 (30%), Gaps = 24/440 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 118

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNRE---QIQAVIEAN 370
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E      AV    
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430
            +  +V LL         +A   +    +         L  QG I  L  LLV       
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQ 414

Query: 431 TVCLEGLENILKVGEAEK------------NLGNTDVNVFTQMIDDAEGLEKIESLQTHD 478
                G      V                  L     N    +I     +     L    
Sbjct: 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSP 472

Query: 479 NAEIYEKSVKLLETYWLDDE 498
              I   +  +L     D E
Sbjct: 473 IENIQRVAAGVLCELAQDKE 492

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  266 bits (681), Expect = 7e-83
 Identities = 82/432 (18%), Positives = 147/432 (34%), Gaps = 23/432 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +   +   D  V  +      +L   E S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V   GGL  ++A LN +  +  L   T  L     G  +     + S    AL +++ 
Sbjct: 137 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373
              D  T+       L  L+ LL  +   ++   A   +SN+T  N +    V +   I 
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 374 PLVALLENA--EFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRI 429
            LV  +  A    DI + A  A+ + TS           + +   +  +  LL  P    
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371

Query: 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL 489
           +     GL   L +  A               + +   + ++  L    + +   ++   
Sbjct: 372 LIKATVGLIRNLALCPANH-----------APLREQGAIPRLVQLLVRAHQDTQRRTSMG 420

Query: 490 LETYWLDDEDET 501
                  +    
Sbjct: 421 GTQQQFVEGVRM 432

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  246 bits (629), Expect = 3e-75
 Identities = 74/443 (16%), Positives = 139/443 (31%), Gaps = 47/443 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +V  + S    V +   T    L  + +      V  +G + + V  LL +   +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFL 160

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRC 193
                 L  +A G  E   +++  G     V ++ + +   +       L  ++      
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH 253
           +  ++  GG+  L   L   P   +++N  WTL N      +   + +   L  L  L+ 
Sbjct: 220 KPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG 276

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI--PALRTVGN 311
           S+D  V+T A   LS L+         V + G    L   ++       I  PA+  + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 312 IVTGDD---MQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQAVI 367
           + +      M    V  +  LP ++ LL   ++      +A   +    A        + 
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW--PLIKATVGLIRNLALCPANHAPLR 394

Query: 368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGG--------------------THEQIK 407
           E   I  LV LL  A  D ++  +   +                                
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454

Query: 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 467
            +     I     LL  P   I  V    L  + +  EA             + I+    
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA------------AEAIEAEGA 502

Query: 468 LEKIESLQTHDNAEIYEKSVKLL 490
              +  L    N  +   +  +L
Sbjct: 503 TAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  230 bits (588), Expect = 4e-69
 Identities = 59/353 (16%), Positives = 116/353 (32%), Gaps = 21/353 (5%)

Query: 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199
           A+ N+ +         +   A+P   KLL      V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV 259
              +  ++  +     +   R    TL N    +        S  +PAL  ++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
           L  A   L  L         AV  AG   ++   L   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL 379
              ++       L+N++     + +       +  + +       A++EA  +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 380 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN 439
            +    + +   W + N +   T +      ++G +  L  LL   D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL--QTHDNAEIYEKSVKLL 490
           +       K            M+    G+E +     +  D  +I E ++  L
Sbjct: 293 LTCNNYKNK-----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  208 bits (531), Expect = 6e-61
 Identities = 58/387 (14%), Positives = 138/387 (35%), Gaps = 21/387 (5%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + LL ++   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTK-LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 126

Query: 228 NFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 245

Query: 347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 406
              WT+ N++    +Q        ++G LV LL + + ++   AA  +SN T     +  
Sbjct: 246 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 301

Query: 407 KFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 464
             +   G I+ L   ++       I    +  L ++           + +  +    +  
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT--------SRHQEAEMAQNAVRL 353

Query: 465 AEGLEK-IESLQTHDNAEIYEKSVKLL 490
             GL   ++ L    +  + + +V L+
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLI 380

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  198 bits (504), Expect = 5e-57
 Identities = 63/371 (16%), Positives = 120/371 (32%), Gaps = 34/371 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 244

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +      +    Q        LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369
                 + ++ + ++E                       C    +I A +      +   
Sbjct: 422 TQQQFVEGVRMEEIVE----------------------GCTGALHILARDVHNRIVIRGL 459

Query: 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 429
           N I   V LL +   +I++ AA  +         E  + +  +G   PL +LL   +  +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 430 VTVCLEGLENI 440
            T     L  +
Sbjct: 518 ATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  121 bits (306), Expect = 9e-30
 Identities = 49/287 (17%), Positives = 86/287 (29%), Gaps = 30/287 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQL 133
           L  +V  + S+D  V          L +         V + G +   V  +LR  D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 134 QFEAAWALTNIASGTSEHTKV---VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              A  AL ++ S   E       V  H  +P+ VKLL+ PS     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
           P     +  QG +  L+  L  +      R  +   +     +     + V     AL  
Sbjct: 387 PANHAPLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           L     + +                     +      P   + L  P  ++   A   + 
Sbjct: 446 LARDVHNRI--------------------VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNIT 356
            +    +   + +    A   L  LL S N    +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG--VATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  283 bits (727), Expect = 3e-93
 Identities = 93/248 (37%), Positives = 139/248 (56%), Gaps = 13/248 (5%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
            LP +   ++S+D +    A    S +    N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
           QAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190

Query: 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483
            P+ +I+   L  L NI   G  +K           Q + +A  LEK+E LQ+H+N +I 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK-----------QAVKEAGALEKLEQLQSHENEKIQ 239

Query: 484 EKSVKLLE 491
           +++ + LE
Sbjct: 240 KEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  272 bits (698), Expect = 7e-89
 Identities = 84/241 (34%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +  Q+ 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQIL 71

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V+  G L  L+  L+  P   +L+ A W LSN   G  +     + + ALPAL  L+ 
Sbjct: 132 QAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           S ++++L +A WALS ++ G N++ QAV EAG   +L +   H +  +   A   +  + 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

Query: 314 T 314
           +
Sbjct: 251 S 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
           R         + +  +   L + +   +  A    S   S G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALV 60

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479
            LL  P+ +I+   L  L NI             +     Q + DA  L  +  L +  N
Sbjct: 61  QLLSSPNEQILQEALWALSNIAS---------GGNEQ--IQAVIDAGALPALVQLLSSPN 109

Query: 480 AEIYEKSVKLL 490
            +I ++++  L
Sbjct: 110 EQILQEALWAL 120

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  260 bits (667), Expect = 9e-85
 Identities = 77/201 (38%), Positives = 112/201 (55%), Gaps = 2/201 (0%)

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
                LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+ 
Sbjct: 9   HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE 68

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
            +L  AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G 
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGG 127

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
            EQIQAVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L 
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLE 186

Query: 420 DLLVCPDPRIVTVCLEGLENI 440
            L    + +I     E LE +
Sbjct: 187 QLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  182 bits (464), Expect = 9e-55
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VID GA+P  V+LL 
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           SP++ + ++A+WAL NIA         V+  G L  L+  L+  P   +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNI 123

Query: 230 CRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288
             G  +     +   ALPAL  L+ S ++++L +A WALS ++ G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 289 RLAEFLMHPSPSVLIPALRTVGNIVT 314
           +L +   H +  +   A   +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  171 bits (436), Expect = 1e-50
 Identities = 77/245 (31%), Positives = 110/245 (44%), Gaps = 43/245 (17%)

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                 +P  V+ L SP     + A+  L  IA         V+  G             
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG------------- 54

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274
                                        ALPAL  L+ S ++++L +A WALS ++ G 
Sbjct: 55  -----------------------------ALPALVQLLSSPNEQILQEALWALSNIASGG 85

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L+ 
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
           LLS +  + I +EA W +SNI +G  EQ QAV EA  +  L  L  +    I+KEA  A+
Sbjct: 146 LLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204

Query: 395 SNATS 399
               S
Sbjct: 205 EKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
           R         + +  +V  L + +    + A   +S   S G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALV 60

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479
            LL  P+ +I+   L  L NI             +     Q + DA  L  +  L +  N
Sbjct: 61  QLLSSPNEQILQEALWALSNI---------ASGGNEQ--IQAVIDAGALPALVQLLSSPN 109

Query: 480 AEI 482
            +I
Sbjct: 110 EQI 112

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  259 bits (663), Expect = 7e-78
 Identities = 73/434 (16%), Positives = 137/434 (31%), Gaps = 25/434 (5%)

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +DV+     +  +            D   QY  T   R      R+    E +  G+   
Sbjct: 55  DDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIP 109

Query: 121 FVEFLLREDYP-QLQFEAAWALTNIASGTSEH-TKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             +F        Q   E +  L +       +     +   A+P   KLL      V  +
Sbjct: 110 STQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNK 169

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   +  ++        ++ S   +  ++  +     +   R  + TL N    +     
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
              S  +PAL +++ S  D VL  A   L  L         AV  AG   ++   L   +
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 289

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              L      +  +  G+      ++       L+N++   Y           V  + + 
Sbjct: 290 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR-TYTYEKLLWTTSRVLKVLSV 348

Query: 359 NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 418
                 A++EA  +  L   L +    + +   W + N +   T +      ++G +  L
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTL 404

Query: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL--QT 476
             LL   D  +VT     L N+       K            M+    G+E +     + 
Sbjct: 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNK-----------MMVCQVGGIEALVRTVLRA 453

Query: 477 HDNAEIYEKSVKLL 490
            D  +I E ++  L
Sbjct: 454 GDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  226 bits (578), Expect = 8e-66
 Identities = 70/449 (15%), Positives = 138/449 (30%), Gaps = 42/449 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 377

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +           Q        LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369
                 + ++ + ++                      EAC    +I A +      +   
Sbjct: 555 TQQQFVEGVRMEEIV----------------------EACTGALHILARDIHNRIVIRGL 592

Query: 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 429
           N I   V LL +   +I++ AA  +         E  + +  +G   PL +LL   +  +
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 650

Query: 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL 489
            T     L  + +    +     +              L + E +  ++  ++       
Sbjct: 651 ATYAAAVLFRMSEDKPQDYKKRLSVELT--------SSLFRTEPMTWNETGDLGLDIGAQ 702

Query: 490 LETYWLDDEDETMPPGDASQPGFGFGGNG 518
            E      +D +     +   G    G  
Sbjct: 703 GEPLGYRQDDPSYRSFHSGGYGQDAMGMD 731

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  240 bits (613), Expect = 6e-75
 Identities = 55/339 (16%), Positives = 107/339 (31%), Gaps = 34/339 (10%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
            +          P +++              +          A   L  + S   EH   
Sbjct: 20  CETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDEEHRHA 68

Query: 155 VIDHGAVPIFVKLLYSPSD-----------DVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           + + G +    +LL    +            +R  A  AL N+       +  + S  G 
Sbjct: 69  MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHL-IHSNDDEVL 260
           +  L          + +     L N            +    ++ AL    +    +  L
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 261 TDACWALSYLS-DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP-------ALRTVGNI 312
                AL  LS   T +K       G    L   L + S +  +         LR V ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII 372
           +  ++   Q + E   L  LL  L  ++  +I   AC T+ N++A N +  +A+ +   +
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307

Query: 373 GPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 411
             L  L+ +    I   +A A+ N  +    +     ++
Sbjct: 308 SMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIM 346

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  113 bits (284), Expect = 8e-28
 Identities = 46/223 (20%), Positives = 76/223 (34%), Gaps = 14/223 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +VA + S    +Q    +  R L         + +   G V   +E  L        
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 135 FEAAWALTNIASGTSE-HTKVVIDHGAVPIFVKLLYSPSDD----VREQAVWALGNIAG- 188
                AL N+++  +E    +    GA+   V  L   S      + E     L N++  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 189 --DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPA 244
              +   R ++     L  LL  L     L+++ NA  TL N     P  Q     +  A
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 306

Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAG 285
           +  L +LIHS    +   +  AL  L        K   ++  G
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPG 349

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  101 bits (254), Expect = 8e-24
 Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 42/296 (14%)

Query: 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
           L  +R    T   +             P +    + + +  +  +  A   L  LS    
Sbjct: 13  LEQIRAYCETCWEWQEAH--------EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 276 DKIQAVIEAGVFPRLAEFL-----------MHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324
            +  A+ E G    +AE L            H S ++   A   + N+  GD      + 
Sbjct: 65  HR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 325 EYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENA 382
             +  +  L+  L     + +++     + N++       +  + E   +  L+      
Sbjct: 124 SMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182

Query: 383 EF-DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP-------RIVTVCL 434
           +     K    A+ N ++  T  +     + G +  L   L                  L
Sbjct: 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL 242

Query: 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
             + +++   E  +           Q++ +   L+ +       +  I   +   L
Sbjct: 243 RNVSSLIATNEDHR-----------QILRENNCLQTLLQHLKSHSLTIVSNACGTL 287

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  215 bits (548), Expect = 3e-64
 Identities = 60/387 (15%), Positives = 123/387 (31%), Gaps = 36/387 (9%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V+  L     + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQ-YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + ++ ALP LA  +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341
             +G+   L  ++ +   +           +    ++  +   E       L   + N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 342 KSIKKEACWTVSNITAGNREQIQA-------------VIEANIIGPLVALLENAEFDIKK 388
                  C++  +    N                   +  ++ I   + L+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 389 EAA-WAISNATSG----GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443
           EA   A+ N T+      +       + +  +  +  LL   +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 444 GEAEKNLGNTDVNVFTQMIDDAEGLEK 470
               + +GN      T+++    G   
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTS 388

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  113 bits (284), Expect = 2e-27
 Identities = 46/308 (14%), Positives = 89/308 (28%), Gaps = 28/308 (9%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL------ 168
           SG              P++ F A   L N++S  +    +    G +   +  +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQPKLSMLR 220
               D   E  +  L N++            Q       A            +    M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 221 NATWTLSNFCRG-KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-- 277
           N    L       K              L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 278 ---IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
                  ++    P++A  L   +  V+      + N+          V+  Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 335 LLSGNYKKSIKKE-----ACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD-IKK 388
           LL+ +   +   E     AC+TV N+ A   +  +    ++++  ++ L  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 389 EAAWAISN 396
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  111 bits (278), Expect = 1e-26
 Identities = 65/452 (14%), Positives = 133/452 (29%), Gaps = 73/452 (16%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + S +  VQ       R  L    +    E  R   +   V  L R    ++Q
Sbjct: 46  ICKLVDLLRSPNQNVQQAAAGALR-NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----------------SDDVREQ 178
            +    L N++S   +  K  +   A+P+    +  P                  +V   
Sbjct: 105 KQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNFCRG 232
           A   L N++      R  + +  GL+  L           +     + N    L N    
Sbjct: 163 ATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221

Query: 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
                  +V      L +   +   E  +  C++        N+    + E    P+   
Sbjct: 222 LDA----EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK--- 274

Query: 293 FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV 352
                                      +  +    A+   LNL+  + K +  +     +
Sbjct: 275 --------------------------GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL 308

Query: 353 SNITAGNRE-----QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 407
            N+TA              ++   +  +  LL++   D+ +  A  +SN +    H  + 
Sbjct: 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR---HPLLH 365

Query: 408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 467
            ++       +  LL            + L +        +NL  +      +    +  
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSE-DILSSACY---TVRNLMASQPQ-LAKQYFSSSM 420

Query: 468 LEKIESL-QTHDNAEIYEKSVKLLETYWLDDE 498
           L  I +L ++  + +  E +  LL   W   E
Sbjct: 421 LNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 85.7 bits (211), Expect = 5e-18
 Identities = 34/227 (14%), Positives = 76/227 (33%), Gaps = 25/227 (11%)

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
             +P     + S D++      + + +         Q V + G   +L + L  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
             A   + N+V               +   ++LL       I+K+    + N+++ +  +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--E 119

Query: 363 IQAVIEANIIGPLVALL----------------ENAEFDIKKEAAWAISNATSGGTHEQI 406
           ++  + A+ +  L   +                E  + ++   A   + N +S     + 
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD-AGRQ 178

Query: 407 KFLVIQGCIKPLCDLL------VCPDPRIVTVCLEGLENILKVGEAE 447
                 G I  L   +         D + V  C+  L N+    +AE
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE 225

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 78.7 bits (193), Expect = 8e-16
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 35/326 (10%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
             LA+ V  P +     N  +        D  V +  T   R L S   +        SG
Sbjct: 130 PVLADRVIIPFSGWCDGNSNMSRE---VVDPEVFFNATGCLRNL-SSADAGRQTMRNYSG 185

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++   +   ++      + +       +    +   ++  +       +    + +    
Sbjct: 186 LIDSLMA-YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL-EYNARNAYTE 243

Query: 177 EQAVWALGNIAGD---------------SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           + +     N +                 +P+    +     +   L  +    K + L  
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 222 ATWTLSNFCRGKPQPPFD------QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
               L N    K                 LP +A L+ S + +V+      LS +S   +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RH 361

Query: 276 DKIQAVIEAGVFPRLAEFL------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
             +  V+   VFP +   L         S  +L  A  TV N++       +       L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNI 355
             ++NL   +      + A   +S++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 75.6 bits (185), Expect = 9e-15
 Identities = 30/274 (10%), Positives = 71/274 (25%), Gaps = 20/274 (7%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM 318
              A  AL  L   +                   L    +  +       + N+ + D++
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 319 QTQCVIEYQALPCLLNLLSGNYK---------------KSIKKEACWTVSNITAGNREQI 363
           +    +   ALP L + +   +                  +   A   + N+++ +  + 
Sbjct: 121 KE--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV 423
                + +I  L+A ++N     + +     +               +    + L     
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 424 CPDPRI-VTVCLEGLENILKVGEAEKNLGNTDVN 456
                   T C     + +     +  L   + N
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  205 bits (523), Expect = 2e-60
 Identities = 60/298 (20%), Positives = 104/298 (34%), Gaps = 26/298 (8%)

Query: 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDD 174
           +          A   L  + S   EH   + + G +    +LL              S  
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 175 VREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           +R  A  AL N+  GD      L   +G +  L+AQL       + +     L N     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRA 274

Query: 234 PQPPFDQV--SPALPALAHL-IHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVFPR 289
                  +    ++ AL    +    +  L     AL  LS   T +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 290 LAEFLMHPSPSVLIP-------ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342
           L   L + S +  +         LR V +++  ++   Q + E   L  LL  L  ++  
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSL 393

Query: 343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 400
           +I   AC T+ N++A N +  +A+ +   +  L  L+ +    I   +A A+ N  + 
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  190 bits (483), Expect = 9e-55
 Identities = 60/369 (16%), Positives = 112/369 (30%), Gaps = 43/369 (11%)

Query: 18  VAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPV 77
           +    D+ R RRE  ++ + +  R         +                          
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM-----------------DQ 152

Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL----------LR 127
               + +              KL   E       +   G +    E L            
Sbjct: 153 DKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTND 210

Query: 128 EDYPQLQFEAAWALTNIASGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
                L+  A  ALTN+  G   +   +    G +   V  L S S+D+++     L N+
Sbjct: 211 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270

Query: 187 AGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGKPQPPFDQVS 242
           +       +  +   G +  L+       K S L++     W LS  C    +     V 
Sbjct: 271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVD 329

Query: 243 PALPALAHLI----HSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLM 295
            AL  L   +     +N   ++      L  +S       D  Q + E      L + L 
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389

Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
             S +++  A  T+ N+   +    + + +  A+  L NL+     K I   +   + N+
Sbjct: 390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNL 448

Query: 356 TAGNREQIQ 364
            A    + +
Sbjct: 449 MANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  187 bits (476), Expect = 1e-53
 Identities = 71/441 (16%), Positives = 149/441 (33%), Gaps = 65/441 (14%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-S 115
              ++         K+E +  +++ + ++D   + + +   R LL++  S      +R S
Sbjct: 16  PRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQS 69

Query: 116 GVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164
           G +P  ++ L   D             + +  A+ AL NI     +  +   +   + + 
Sbjct: 70  GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLL 129

Query: 165 VKL------------------------LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
            ++                        + +P +     AV  L  ++ D    R  +   
Sbjct: 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNEL 188

Query: 201 GGLVPLLAQL----------NGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPALPAL 248
           GGL  +   L          N    +++ R A   L+N   G    +     +   + AL
Sbjct: 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 248

Query: 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPS-PSVLIPAL 306
              + S  +++       L  LS   +   +  + E G    L E  +     S L   L
Sbjct: 249 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308

Query: 307 RTVGNI-VTGDDMQTQCVIEYQALPCLLNLLSGNYKKS---IKKEACWTVSNIT---AGN 359
             + N+     + +        AL  L+  L+   + +   I +     + N++   A N
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368

Query: 360 REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 419
            +  Q + E N +  L+  L++    I   A   + N ++    +  + L   G +  L 
Sbjct: 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLK 427

Query: 420 DLLVCPDPRIVTVCLEGLENI 440
           +L+      I       L N+
Sbjct: 428 NLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  127 bits (321), Expect = 4e-32
 Identities = 57/394 (14%), Positives = 123/394 (31%), Gaps = 55/394 (13%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP------------S 172
           LL       + + +  L  + S + +    +   G +P+ ++LL+              S
Sbjct: 37  LLSMLGTHDKDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGS 95

Query: 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232
            + R +A  AL NI    P        +  ++ LL Q+                   C  
Sbjct: 96  KEARARASAALHNIIHSQP-DDKRGRREIRVLHLLEQIR-------------AYCETCWE 141

Query: 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
             +       P +    + + +  +  +  A   L  LS     +  A+ E G    +AE
Sbjct: 142 WQE----AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAE 196

Query: 293 FL-----------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNY 340
            L            H S ++   A   + N+  GD      +   +  +  L+  L    
Sbjct: 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256

Query: 341 KKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFD-IKKEAAWAISNAT 398
           +  +++     + N++       +  + E   +  L+      + +   K    A+ N +
Sbjct: 257 ED-LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315

Query: 399 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGN--TDVN 456
           +  T  +     + G +  L   L           +E    IL      +N+ +      
Sbjct: 316 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL------RNVSSLIATNE 369

Query: 457 VFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
              Q++ +   L+ +       +  I   +   L
Sbjct: 370 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  204 bits (520), Expect = 4e-59
 Identities = 73/456 (16%), Positives = 148/456 (32%), Gaps = 65/456 (14%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L S+ +  P     R   +P  +  +L      ++  AA  L ++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIA-MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            +P+ V LL  P  +V   A  AL NI+ G     +  + +  G+  L+  L     + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI------------------HSNDDEVL 260
               T TL N          + V  AL AL   +                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV----------- 309
           T+    L  +S   ++  + + E         F++           + V           
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 310 ---------------------GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348
                                 N  T      + + + + +   ++LL  +   +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 349 CWTVSNITAGNR---EQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE 404
              + N+ AG       I++ + +   +  +  LL N    + K A+ A+ N        
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV---DA 386

Query: 405 QIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD 464
           + K L+ +  I  L   L            E  + ++ +      +   ++    + + +
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSE--DTVISILNTINEVIAENLE-AAKKLRE 443

Query: 465 AEGLEKIESLQTHDNAE--IYEKSVKLLETYWLDDE 498
            +G+EK+  +    N        +  +L+T W   E
Sbjct: 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  121 bits (305), Expect = 1e-29
 Identities = 58/401 (14%), Positives = 122/401 (30%), Gaps = 59/401 (14%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
           P  Q E     +  +               +P  + +L    D V+  A   L ++   +
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP--ALPAL 248
            + +  V    G+  L+  L+  PK  +   A   L N   G+ Q     +     +PAL
Sbjct: 80  DKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 249 AHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL----- 302
             L+  + D ++       L  LS   + K++ V  A     L + ++ P          
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNE 196

Query: 303 ------------------------------IPALRTVGNIV---------TGDDMQTQCV 323
                                            LR    +V               +   
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256

Query: 324 IEYQALPCLLNLLSGNYKKS-----IKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL 378
           +    +  L NL    +++       ++ A    +N         + + +  ++   ++L
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316

Query: 379 LENAE-FDIKKEAAWAISNATSGGTHEQI---KFLVIQGCIKPLCDLLVCPDPRIVTVCL 434
           L+ ++   I + +A AI N  +G           L  +  +  + DLL     R+V    
Sbjct: 317 LKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAAS 376

Query: 435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ 475
             L N+      ++ +G   +    + +   +        +
Sbjct: 377 GALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE 417

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  107 bits (268), Expect = 6e-25
 Identities = 60/387 (15%), Positives = 111/387 (28%), Gaps = 70/387 (18%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQL 133
           +PV+V  +      V        +  +S  R       +     VP  V  L +     L
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALK-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP------------------SDDV 175
                  L N++S   +  K+ I   A+      +  P                   + V
Sbjct: 151 TEVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208

Query: 176 REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNF 229
                  L N++ +    R  +    GLV  L  +             ++ N    L N 
Sbjct: 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268

Query: 230 CR---------------------------GKPQPPFDQVSPALPALAHLIHSNDDEVLTD 262
                                         +      Q       ++ L  S    +L  
Sbjct: 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEA 328

Query: 263 ACWALSYLSDGT----NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM 318
           +  A+  L  G          A+ +      +A+ L +    V+  A   + N+      
Sbjct: 329 SAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-- 386

Query: 319 QTQCVIEYQALPCLLNLLSGNYKKSIKK-------EACWTVSNITAGNREQIQAVIEANI 371
           + + +I   A+P L+  L G  + S              T++ + A N E  + + E   
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446

Query: 372 IGPLVALLENAEFDIK--KEAAWAISN 396
           I  LV + ++     K  + AA  +  
Sbjct: 447 IEKLVLINKSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  101 bits (253), Expect = 5e-23
 Identities = 56/317 (17%), Positives = 105/317 (33%), Gaps = 43/317 (13%)

Query: 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273
           P     R +  +L +  +G P PP  +  P LP +  ++    D V ++A   L +L   
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR 78

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC-VIEYQALPCL 332
            +     V +    P L   L HP   V + A   + NI  G D   +  +     +P L
Sbjct: 79  NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL------------- 379
           + LL       + +    T+ N+++ +  +++ V  A  +  L   +             
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVIIPHSGWEREPNE 196

Query: 380 -----ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL------VCPDPR 428
                      +    A  + N +S  +  + K     G +  L  ++         D +
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256

Query: 429 IVTVCLEGLENILKVGEAEK--------------NLGNTDVNVFTQMIDDAEGLEK-IES 473
           +V  C+  L N+      E               N   T      +++   E +   I  
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316

Query: 474 LQTHDNAEIYEKSVKLL 490
           L+      I E S   +
Sbjct: 317 LKESKTPAILEASAGAI 333

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  165 bits (418), Expect = 4e-47
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 3/236 (1%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
           S  +P       +    Q +  A   L ++              G   +  + L + +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
           +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A + +S   R + 
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 235 QPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                         L   +     ++   + + L  L  G  +    +   G+  +L   
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349
           +           L  + ++VT      +     +    L  LL    +   + E  
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  145 bits (366), Expect = 9e-40
 Identities = 50/303 (16%), Positives = 107/303 (35%), Gaps = 22/303 (7%)

Query: 202 GLVPLLAQLNGQPK-LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVL 260
           GLVP  + + GQ   +  +++    LS               P  P       + D +  
Sbjct: 12  GLVPRGSHMRGQRGEVEQMKSCLRVLSQ--------------PMPPTAGEAEQAADQQER 57

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
             A   L+ L +  ++       +G+   +  +L   +  +   A + +G          
Sbjct: 58  EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 117

Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE 380
           + V+   AL  LL LL  +   +++ +A + +S +       +   +  +    L+  ++
Sbjct: 118 EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 177

Query: 381 NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
                +K ++A+ + N   G   E    L   G ++ L  L+           L  L ++
Sbjct: 178 QQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236

Query: 441 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWLDDED 499
           +                  +++       + + LQ H+   E  E   KLL+T +    D
Sbjct: 237 VTDFPQGVRECREPELGLEELLR-----HRCQLLQQHEEYQEELEFCEKLLQTCFSSPAD 291

Query: 500 ETM 502
           ++M
Sbjct: 292 DSM 294

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.5 bits (224), Expect = 2e-20
 Identities = 31/237 (13%), Positives = 79/237 (33%), Gaps = 5/237 (2%)

Query: 30  EDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV-WSNDSG 88
              M        + + Q++R   L+    L  +++      +L  + ++V     +  +G
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 89  VQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +++                 I E+V+  G + + +  L R+    ++ +A +A++ +   
Sbjct: 98  LRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
                   +      + ++ +      ++ ++ + L N+    P  +  + S  G+V  L
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM-GMVQQL 214

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264
             L          +    L +     PQ   +   P L     L H        +  
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEY 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  158 bits (400), Expect = 2e-41
 Identities = 59/397 (14%), Positives = 123/397 (30%), Gaps = 31/397 (7%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-TKVV 155
             ++         +       +  +++  L     + +     A+T + +G  +   +VV
Sbjct: 228 LARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVV 286

Query: 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK 215
              G + + + +  +  +  +  A   L   +         +  QG  V +L +L     
Sbjct: 287 AREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VDILKRLYHSKN 343

Query: 216 LSMLRNATWTLSNFC-----RGKPQPPFDQVSPALPALAH---LIHSNDDEVLTDACWAL 267
             +   A   L             +P  D  +  L        +    D ++   A   L
Sbjct: 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGL 403

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327
           +YL+     K + + +      L +     + S L   + T  N+    + Q        
Sbjct: 404 AYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM------ 457

Query: 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387
            LP ++ L     K+ I +E      +      ++I  +    I   L AL +    + +
Sbjct: 458 -LPEMIELAKFA-KQHIPEEHEL---DDVDFINKRITVLANEGITTALCALAKTESHNSQ 512

Query: 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE 447
           +  A  ++     G  E    +V +G +K L  + +    +      + L  I      E
Sbjct: 513 ELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570

Query: 448 KNLGNTDVNV-----FTQMIDDAEGLEKIESLQTHDN 479
            +                +  D   LE  ESL    N
Sbjct: 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  154 bits (390), Expect = 3e-40
 Identities = 61/465 (13%), Positives = 130/465 (27%), Gaps = 88/465 (18%)

Query: 65  APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
             G A KL             D  ++          L+++     + +     +   ++ 
Sbjct: 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMD- 428

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHT-------------------------------- 152
           L R       +       N+ +   +                                  
Sbjct: 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488

Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212
            V+ + G       L  + S + +E     L  + G     R  V+ +GG+  LL     
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALE 547

Query: 213 QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSP--ALPALAHLIHSNDDEVLT-DACWALS 268
             +    R+AT  L+       P+  F        +  L +L+  +   +   ++  AL+
Sbjct: 548 GTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606

Query: 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328
            L+       Q +I+     ++  +LM     +                           
Sbjct: 607 NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYL--------------------------- 639

Query: 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK 388
                            + A   + N+              + +  L  L E+ + +   
Sbjct: 640 ----------------TRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETAT 683

Query: 389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK 448
             A A++  TS       K L I   +  L  L+  P P +    +  + N++    A +
Sbjct: 684 ACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI---NAGE 740

Query: 449 NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 493
            +        T +++   GL ++         E+  + +   E Y
Sbjct: 741 EIAKKLFE--TDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 92.2 bits (228), Expect = 1e-19
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              +   +E       L S+  +  + + I        +E+ L ED+  L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASM--NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           +            ++  V     L     ++       AL  I   S +C + +L+    
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTD 262
           + +L  L   P  ++       + N      +          +  L+ L    DD     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  140 bits (354), Expect = 1e-38
 Identities = 39/214 (18%), Positives = 66/214 (30%), Gaps = 20/214 (9%)

Query: 118 VPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           + R V  L  +   P     AA  + +     SE  K V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
                AL N+  +    +  V    G+  LL  L     L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 237 PFDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 280
               ++ AL  L   I                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 281 VIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +    G+   L  ++            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 87.3 bits (216), Expect = 9e-20
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 22/222 (9%)

Query: 240 QVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
            +   L     ++ ++      ++ A   + +     ++  + V +     +L + L   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  V       + N+V  D+     V E   +P LL +L        KK+    + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 358 GNREQIQAVIEA------NIIGPLVALLEN--------AEFDIKKEAAWAISNATSGGTH 403
            ++ +   + EA      NII P     E          +FDI       + N +S G  
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

Query: 404 EQIKFLVIQGCIKPLCDLL------VCPDPRIVTVCLEGLEN 439
            +       G I  L   +        PD +    C+  L N
Sbjct: 185 GRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 62.3 bits (151), Expect = 4e-11
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  ++  +   +  VQ       R  L  E +    EV     VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----------------SDDVREQ 178
            +    L N++S   +  K ++   A+    + +  P                  D+   
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNFC 230
               L N++      R  +    GL+  L         + QP      N    L N  
Sbjct: 171 VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 89.4 bits (221), Expect = 3e-20
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 21/197 (10%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++ +    L + +   L  E A A   +A    E  K +I     P+         +  +
Sbjct: 70  MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTK 124

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
               +AL  IA  +P     ++     + +L+  N + KL+ L        NF     + 
Sbjct: 125 INVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGEN 174

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F  V+P LP + +L+H  D+ V   A  AL +L+   +   + VI      +  E L  
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND 228

Query: 297 PSPSVLIPALRTVGNIV 313
            S  V       +  ++
Sbjct: 229 TSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 32/209 (15%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           V+ + +E LL +D   +   A   +  IA    +  + ++      +F  L  S +  + 
Sbjct: 33  VLKKLIE-LLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
           ++   A G +A + P           ++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
               ++  +     ++ S + E    A   +  + + +   +   +     PR+   L  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIE 325
               V   A+  + ++ T +D   + VI+
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVIK 221

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 28/282 (9%), Positives = 77/282 (27%), Gaps = 69/282 (24%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +   ++LL      V + A+  +  IA       + +L +     L + L     + + 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKK-----LFSLLKKSEAIPLT 87

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
           +          + KP    + V   +P L       D++   +  +AL  ++      + 
Sbjct: 88  QEIAKAFGQMAKEKP----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
           +++           L   +                                         
Sbjct: 144 SIVRD-----FMSMLSSKNRED-------------------------------------- 160

Query: 340 YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 399
                K  A   +  +   + + +   +       ++ LL + +  ++  A  A+ +  +
Sbjct: 161 -----KLTALNFIEAMGENSFKYVNPFLPR-----IINLLHDGDEIVRASAVEALVHLAT 210

Query: 400 GGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441
                      ++  +    + L      +     EG+  +L
Sbjct: 211 LNDK-------LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 73.7 bits (181), Expect = 9e-15
 Identities = 39/317 (12%), Positives = 83/317 (26%), Gaps = 75/317 (23%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L +  +    +E+ R          LL +     +  +A  L                  
Sbjct: 16  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG-----------GQD 54

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
           AV + ++     +   R+   + LG I     +C D V +      L           + 
Sbjct: 55  AVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVR 108

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A  + +  C+  P          +             V     +A+S ++D       
Sbjct: 109 ATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
                   P L   L  P+  V   A   +      +              C + +L   
Sbjct: 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK 204

Query: 340 YKKSIKKEACWTVSNITAGNREQIQAVIEA--------------------NIIGPLVALL 379
             + ++ EA   +S     ++  +  + +                      ++  L  +L
Sbjct: 205 N-EEVRIEAIIGLSYR--KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTML 261

Query: 380 ENAE-FDIKKEAAWAIS 395
              +  +I   A   + 
Sbjct: 262 YKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 28/267 (10%), Positives = 70/267 (26%), Gaps = 52/267 (19%)

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
             + +A    G                      L +L          ++   L    RG 
Sbjct: 5   YQKRKASKEYGLYNQCKKLN----------DDELFRLLDDHNSLKRISSARVLQL--RGG 52

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                     A+          +        + L  +        +   +          
Sbjct: 53  QD--------AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMA 99

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L   S  V   A+ +       + + +  ++E         + + +   ++++   + +S
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVE------QSQITAFDKSTNVRRATAFAIS 153

Query: 354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG 413
            I   ++  I           L+ LL++   D++  AA+AI+      +           
Sbjct: 154 VI--NDKATIP---------LLINLLKDPNGDVRNWAAFAININKYDNSD---------- 192

Query: 414 CIKPLCDLLVCPDPRIVTVCLEGLENI 440
                 ++L   +  +    + GL   
Sbjct: 193 IRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 62.8 bits (153), Expect = 4e-13
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 11 SRRNKYK-VAVDADEGRRRREDNMVEIRKNKREESLQKKRR 50
          +R +++K    D+ E RRRR +  VE+RK K+++ + K+R 
Sbjct: 2  ARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 71.0 bits (173), Expect = 4e-13
 Identities = 50/361 (13%), Positives = 119/361 (32%), Gaps = 62/361 (17%)

Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212
           K ++    +    + +++ S + ++Q V  + NI          +  QG +  +L  L  
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLAN 509

Query: 213 QPKLS--MLRNATWTLSNFCRG-KPQPPFDQVSP--ALPALAHLIHSNDDEVLT------ 261
           +  +   +       L+       P   F + S   A+P L  L+  +            
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569

Query: 262 --------DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
                   +A  AL+ L+       + V +  V  ++                 T+ N++
Sbjct: 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY--------------WSTIENLM 615

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG 373
             +++  Q       L  + N++S     + K      + N  +     I          
Sbjct: 616 LDENVPLQR----STLELISNMMSHPLTIAAKFFN---LENPQSLRNFNI---------- 658

Query: 374 PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV--CPDPRIVT 431
            LV LL+ ++ + ++  A   +N  +       + L  +  I+    +      D  +  
Sbjct: 659 -LVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQ 717

Query: 432 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI--ESLQTHDNAEIYEKSVKL 489
             L     +    E   + G  +V     ++ + + L+     SL+  D+   +  ++ +
Sbjct: 718 RLLMLFFGLF---EVIPDNGTNEVY---PLLQENQKLKDALNMSLKRGDSGPEFSAAIPV 771

Query: 490 L 490
           +
Sbjct: 772 I 772

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 55/394 (13%), Positives = 118/394 (29%), Gaps = 51/394 (12%)

Query: 109 IEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           I+E +R+ +   +++ L R  +   +Q  +A  L    S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
           +        E +V AL  ++  +     +  ++     LL  +  Q     L      ++
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402

Query: 228 NFCRGKPQPPFDQVSPALPALAHLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
           N      +                           E             D      + ++
Sbjct: 403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYIL 454

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN- 339
              +   L   + + SP+     +R + NI    +   Q     Q  A+  +L  L+   
Sbjct: 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA---QQGAVKIILEYLANKQ 511

Query: 340 -YKKSIKKEACWTVSN--ITAGNREQIQAVIEANIIGPLVALLENAEFDIKK-------- 388
              + I+   C  ++   I        +     N I  L  LL  +              
Sbjct: 512 DIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571

Query: 389 ------EAAWAISNATSGGTHEQIK----FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 438
                 EA  A++N  S  T +  +     +  +     + +L++  +  +    LE + 
Sbjct: 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELIS 631

Query: 439 NIL--------KVGEAEKNLGNTDVNVFTQMIDD 464
           N++        K    E      + N+  +++  
Sbjct: 632 NMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL 665

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 90  QYECTTQFRKLLSIERSPPIEEVIRSGVVPRF---VEFLLREDYPQLQFEAAWALTNIAS 146
            YE       L S E S   E          +   +E L+ ++   LQ      ++N+ S
Sbjct: 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635

Query: 147 GTSEHTKVVIDHG------AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
                     +           I VKLL     + +        NIA   P     +L++
Sbjct: 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695

Query: 201 GGLVPLLAQL 210
             L+    Q+
Sbjct: 696 KELIENAIQV 705

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 47/249 (18%), Positives = 70/249 (28%), Gaps = 56/249 (22%)

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL 216
           D   V +++K L   S  VR  A +ALG I     R           V  L +       
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERA----------VEPLIKALKDEDA 64

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276
            + R A   L                 A+  L   +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
                        L + L      V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 -------ERAVEPLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 337 SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN 396
                  +++ A   +  I  G            +   +  L E      +K A   +  
Sbjct: 153 KDED-GWVRQSAADALGEI--GGER---------VRAAMEKLAETGTGFARKVAVNYLET 200

Query: 397 ATSGGTHEQ 405
             S   H  
Sbjct: 201 HKSFNHHHH 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 2e-12
 Identities = 68/442 (15%), Positives = 133/442 (30%), Gaps = 132/442 (29%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS---GTSEH 151
           +   +L     S          +V +FVE +LR +Y        + ++ I +     S  
Sbjct: 62  SGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMM 108

Query: 152 TKVVID-----HGAVPIFVKLLYSPSDDV-REQAVWALGN-IAGDSPRCRDLVL-SQGG- 202
           T++ I+     +    +F K       +V R Q    L   +    P  +++++    G 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPA-KNVLIDGVLGS 161

Query: 203 ----LVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
               +   +   + + +  M     W  L N C   P    + V   L  L + I  N  
Sbjct: 162 GKTWVALDVCL-SYKVQCKMDFKIFWLNLKN-CN-SP----ETVLEMLQKLLYQIDPNWT 214

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALRTVGNIVTGD 316
                        SD +   I+  I + +   L   L      + L+        ++   
Sbjct: 215 S-----------RSDHS-SNIKLRIHS-IQAELRRLLKSKPYENCLL--------VL--L 251

Query: 317 DMQTQCVIEYQALPC--LL--------NLLSGNYKKSIKKEACWTVSNITAGNREQIQAV 366
           ++Q         L C  LL        + LS      I  +                  +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-------------HHSMTL 298

Query: 367 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD 426
               +   L+  L+    D+ +E                                    +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREV----------------------------LTT----N 326

Query: 427 PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA-EGLEKIESLQTHDNAEIYEK 485
           PR +++  E + + L   +   N  + + +  T +I+ +   LE  E  +  D   ++  
Sbjct: 327 PRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 486 SVK----LLETYWLD-DEDETM 502
           S      LL   W D  + + M
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVM 405

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 71/406 (17%), Positives = 118/406 (29%), Gaps = 144/406 (35%)

Query: 2   SLRPNSKADSR-RNKYKVAVDADEGRRRREDNMVEIRKN-KREESLQKKRREGLQNQQP- 58
            ++   +  S     Y    D     R   DN V  + N  R +    K R+ L   +P 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPA 150

Query: 59  ---------------LANDVNAPGTAKKLENLPVMVAGV-WSNDSGVQYECTT------Q 96
                          +A DV         +    M   + W N       C +       
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-----CLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEM 201

Query: 97  FRKLLS---------IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
            +KLL           + S  I+  I S +       L  + Y          L      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYEN-------CL------ 247

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPL 206
                 +V+                 +V+    W   N+      C+ L+ ++   +   
Sbjct: 248 ------LVL----------------LNVQNAKAWNAFNL-----SCKILLTTRFKQVTDF 280

Query: 207 LAQLNGQPKLSMLRNATWT-------LSNFCRGKPQ--PP-FDQVSP-ALPALAHLIHSN 255
           L+            + T T       L  +   +PQ  P      +P  L  +A  I   
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-- 338

Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGV-----------FPRLAEFLMHPSPSVLIP 304
            D + T   W          DK+  +IE+ +           F RL+ F   P PS  IP
Sbjct: 339 -DGLAT---W--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---P-PSAHIP 388

Query: 305 A--LRTV-GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS-IKK 346
              L  +  +++  D M             ++N L   +K S ++K
Sbjct: 389 TILLSLIWFDVIKSDVMV------------VVNKL---HKYSLVEK 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 52/314 (16%), Positives = 80/314 (25%), Gaps = 105/314 (33%)

Query: 250 HLIHSNDDEVLTDAC-WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALR 307
           H+I S D    T    W L  LS      +Q  +E  +     +FLM P       P++ 
Sbjct: 53  HIIMSKDAVSGTLRLFWTL--LSKQEE-MVQKFVEEVLRINY-KFLMSPIKTEQRQPSMM 108

Query: 308 TVGNIVTGDDMQT-------------QCVIEYQALPCLLNLLSGNY----------KKSI 344
           T   I   D +               Q  ++ +    LL L               K  +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWV 166

Query: 345 KKEAC--------------WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA 390
             + C              W    +   N    + V+E      L  LL   + D    +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLE-----MLQKLL--YQIDPNWTS 215

Query: 391 AWAISNATSGGTHEQIKFLVIQGCIKPLCD-LL----VCPDPRIVTV----CLEGLENIL 441
               S+      H     L      KP  + LL    V  + +        C        
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSC-------- 266

Query: 442 KVGEAEKNLGNT-DVNVFTQ----------MIDDAEGLEKIESLQTHDNAEIYEKSVKLL 490
                 K L  T    V             +   +  L   E         +  K     
Sbjct: 267 ------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK------SLLLK----- 309

Query: 491 ETYWLDDEDETMPP 504
              +LD   + +P 
Sbjct: 310 ---YLDCRPQDLPR 320

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 66.4 bits (161), Expect = 1e-11
 Identities = 54/320 (16%), Positives = 108/320 (33%), Gaps = 50/320 (15%)

Query: 111 EVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           +   + ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP----LLAQLNGQPKLSMLRNAT 223
           +   S  V+E   W +G IA       + +  Q  L       L  L   PK++   N +
Sbjct: 420 MNDQSLQVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCS 474

Query: 224 WTLSNFCRGKPQPPFDQVSPALPA-LAHLIHS-----NDDEVLTDACWALSYLSDGTNDK 277
           WT+ N      +     +    PA +  LI +     N+      A  AL+ + +   D 
Sbjct: 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534

Query: 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL----- 332
           +     + +   + + L           +    N +T +D Q+   ++   L  L     
Sbjct: 535 VAETSAS-ISTFVMDKLGQ--------TMSVDENQLTLEDAQSLQELQSNILTVLAAVIR 585

Query: 333 -----------------LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPL 375
                              LL       I+ +  + +S + A   +  +  +E      L
Sbjct: 586 KSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYL 644

Query: 376 VALLENAEFDIKKEAAWAIS 395
           +  L   +  +   A   I+
Sbjct: 645 LKALNQVDSPVSITAVGFIA 664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 43/309 (13%), Positives = 91/309 (29%), Gaps = 24/309 (7%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +  V R  ++P  +  L   L      ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225
           + L      VR    W L   A            +  +  LL ++    K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEA 284
            +             ++  L  L         + L     A+  L+D   +   +     
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ 525

Query: 285 GVFPRLAEFL--MHPSPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLSGNY 340
            + P L +    +      L P L  + ++ T         C   YQ    L+       
Sbjct: 526 MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 585

Query: 341 K-------------KSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFDI 386
                         K     A   +S +  G    I+ ++  +NI+  +   +++   ++
Sbjct: 586 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 645

Query: 387 KKEAAWAIS 395
           ++ +   + 
Sbjct: 646 RQSSFALLG 654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 50.9 bits (121), Expect = 8e-07
 Identities = 53/368 (14%), Positives = 101/368 (27%), Gaps = 51/368 (13%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG-LVPLLAQLNGQPKL--- 216
           +P+ V  +     D+        G   GD       +       + +LA +     L   
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI 360

Query: 217 -----SMLRNATW--------TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDA 263
                 +L +  W         L     G  Q     +   +P L   +      V +  
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420

Query: 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323
           CW LS  +     +        +   L + ++  +  V   A      +    +     +
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE---EEACTEL 477

Query: 324 IEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN 381
           + Y    L  L+   S  Y+          +  +       +       ++ P +    N
Sbjct: 478 VPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN 536

Query: 382 AEFDIKKEAAWAISNATSGGTHEQIKFL-----VIQGCIKPLCDLLV------------- 423
              D  K+    +   +S  T  Q  FL     V Q C+  +   L              
Sbjct: 537 MLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE 596

Query: 424 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIY 483
            PD   + V L+ L  + +                 Q++  +  L  +         E+ 
Sbjct: 597 APDKDFMIVALDLLSGLAEGLGGN----------IEQLVARSNILTLMYQCMQDKMPEVR 646

Query: 484 EKSVKLLE 491
           + S  LL 
Sbjct: 647 QSSFALLG 654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 60.9 bits (146), Expect = 7e-10
 Identities = 47/407 (11%), Positives = 129/407 (31%), Gaps = 40/407 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLS----IERSPPIEEVIRSGVVPRFVEFLLREDY 130
           +  +   + S+   ++   +   + ++           +   +   +  R    + +++ 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             +Q EA   + ++ S              +   +  L SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             C ++V     +  LL++L+    +S  R     ++   R       + +   +P +  
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
             + +DDE+      A          ++   +   +             ++ +  L    
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII-------------NICLKYLTYDP 309

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS------IKKEACWTVSNITAGNREQIQ 364
           N    D+ + +  ++              Y         +++ A   +  + +   E + 
Sbjct: 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369

Query: 365 AVIEANIIGPLVALLENAEFDIKKEAAWAI------SNATSGGTHEQIKFLVIQGCIKPL 418
              +  +   L++  +  E ++K +   A       +        +       +  +  L
Sbjct: 370 EFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTML 428

Query: 419 CDLLVCPDPRIVTVCLEGL-ENILKVGEAEKNLGNTDVNVFTQMIDD 464
              +    P IV    + + E  +K  +   N+    VNV    +  
Sbjct: 429 QSQV----PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ 471

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.9 bits (120), Expect = 9e-07
 Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 25/234 (10%)

Query: 123  EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
            +         ++  A  +L  +        ++ +      + ++   SPS++V+  A +A
Sbjct: 824  DVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYA 879

Query: 183  LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSNFCRGKPQPPFDQV 241
            LG+I+  +            L  +L ++  QPK   +L ++   + +        P+  V
Sbjct: 880  LGSISVGNLPEY--------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--V 929

Query: 242  SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
                  L       ++         L         K+  +    + PRL  +L+  S   
Sbjct: 930  ENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYA 981

Query: 302  LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
                +  V   ++ D  Q    +    +   L  L      ++++ A  T ++ 
Sbjct: 982  RSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSA 1033

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.0 bits (145), Expect = 9e-10
 Identities = 62/343 (18%), Positives = 114/343 (33%), Gaps = 32/343 (9%)

Query: 107 PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166
           P +   +++ +   F   L  +D P ++  AA  L   A          +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L     D VR  AV A  NIA   P+     L    ++P L Q        +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEAL----VMPTLRQAAEDKSWRVRYMVADKF 266

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 285
           +     K   P    +  +PA  +L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQ--KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345
           + P + E +   +  V       +  +     +     IE+  LP  L  L         
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLSPI--LGKDNTIEH-LLPLFLAQL--------- 372

Query: 346 KEACWTVSNITAGNREQIQAVIEAN-----IIGPLVALLENAEFDIKKEAAWAISNATSG 400
           K+ C  V      N + +  VI        ++  +V L E+A++ ++      +      
Sbjct: 373 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432

Query: 401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443
              E     +   C+  L D        I       L+ +++ 
Sbjct: 433 LGVEFFDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEK 471

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 29/231 (12%), Positives = 73/231 (31%), Gaps = 20/231 (8%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVK 166
            ++     ++P F+   L+++ P+++      L  +    G  + ++ ++     P  V+
Sbjct: 356 GKDNTIEHLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL-----PAIVE 409

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L       VR   +  +  +A        +      L  L          ++   AT  L
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLA----GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNL 465

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
                   +      +  +P +  +    +        + ++ LS+      Q +    +
Sbjct: 466 KKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHM 520

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
            P +      P  +V     +++  I    D      ++ +  P L  L  
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQ 568

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 53/219 (24%)

Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG---------------- 116
           E + + +  +  +   V+        K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 117 ---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               V   ++  L+++   ++  AA AL  I            D  AV   +K L     
Sbjct: 74  DERAVEPLIK-ALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
            VR  A +ALG I  +              V  L +        + ++A   L       
Sbjct: 122 FVRIAAAFALGEIGDERA------------VEPLIKALKDEDGWVRQSAADALGEI---- 165

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
                        A+  L  +        A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 40/263 (15%), Positives = 71/263 (26%), Gaps = 68/263 (25%)

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +      +     P            V +  +        + R A + L     GK    
Sbjct: 2   RGSHHHHHHT--DPE----------KVEMYIKNLQDDSYYVRRAAAYAL-----GKIGDE 44

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                 A+  L   +   D  V   A  AL  + D                 L + L   
Sbjct: 45  -----RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDE 88

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G I  GD+         +A+  L+  L       ++  A + +  I  
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDW-FVRIAAAFALGEI-- 134

Query: 358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP 417
           G+            + PL+  L++ +  +++ AA A+      G                
Sbjct: 135 GDER---------AVEPLIKALKDEDGWVRQSAADALGEI---GGER---------VRAA 173

Query: 418 LCDLLVCPDPRIVTVCLEGLENI 440
           +  L          V +  LE  
Sbjct: 174 MEKLAETGTGFARKVAVNYLETH 196

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 55.6 bits (133), Expect = 9e-09
 Identities = 45/239 (18%), Positives = 82/239 (34%), Gaps = 26/239 (10%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQG--GLVPLLAQLNGQPKL 216
           A+ + ++L     +  R +A  ALG I   +    R +VL +     +  L+Q N +  +
Sbjct: 34  ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTI 93

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV---LTDACWALSYLSDG 273
             LR   + + +   G           A   L  L+ S DD +     D    L  L D 
Sbjct: 94  KALRALGYLVKDVPMGS-----KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS 148

Query: 274 --TNDKIQAVIEAGV-------FPRLAEFLMHPS-PSVLIPALRTVGNIVTGDDMQTQCV 323
                 I  ++ +         F      L   +    L   L  + +++  D+     +
Sbjct: 149 KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVEL 208

Query: 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA 382
               AL  L   LS    +++K      +S I  G   +  A I       +  L+++ 
Sbjct: 209 ----ALDVLEKALSFPLLENVKI-ELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 34/208 (16%), Positives = 66/208 (31%), Gaps = 13/208 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L +++     +D   +        ++L    S     V+    +  F+   L ++  ++ 
Sbjct: 35  LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALSQENEKVT 92

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG--NIAGDSPR 192
            +A  AL  +       +K  +   A    V LL SP D +R + +  L       DS  
Sbjct: 93  IKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL 150

Query: 193 CRDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFCRGKPQPPFDQVS-PAL 245
            R  +        L  ++ G          S        + +      Q   + +   AL
Sbjct: 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELAL 210

Query: 246 PALAHLIHSNDDEVLTDACWALSYLSDG 273
             L   +     E +      +S + DG
Sbjct: 211 DVLEKALSFPLLENVKIELLKISRIVDG 238

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 34/143 (23%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
            + ++   ++ + + AL+ +               A    ++ L +    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           N      R           V  L +L       +   A  +L     G  +         
Sbjct: 68  NFQ--DERA----------VEPLIKLLEDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 245 LPALAHLIHSNDDEVLTDACWAL 267
             A+  L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS 172
           +        +E  L  +  +++  AAW + N             D  AV   +KLL   S
Sbjct: 39  MGDEAFEPLLE-SLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86

Query: 173 DDVREQAVWALGNIAGDS 190
             VR  A  +L  I G+ 
Sbjct: 87  GFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 34/142 (23%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +      +   +  VR     AL  +  ++              PLL  L+      + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDEA------------FEPLLESLS-NEDWRIR 59

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A W + NF          Q   A+  L  L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 280 AVIEAGVFPRLAEFLMHPSPSV 301
            V  A     + +     +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 11/60 (18%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           LL +D   ++  AA +L  I                     KL  + +   R+ AV  L 
Sbjct: 81  LLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 35/153 (22%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           S  L      +   +  V  D   ALS + D      +A         L E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361
              A   +GN    D+         +A+  L+ LL  +    ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLLEDDS-GFVRSGAARSLEQI--GGER 104

Query: 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAI 394
                    +   +  L E      +K A   +
Sbjct: 105 ---------VRAAMEKLAETGTGFARKVAVNYL 128

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 54.0 bits (129), Expect = 7e-08
 Identities = 43/345 (12%), Positives = 96/345 (27%), Gaps = 34/345 (9%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156
              L+ + ++   +  I    +      +  ++  +++  +     ++ S  +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE--IFIK 119

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPK 215
               V + + LL      VR   V  L ++      + + ++L     V  L  L    +
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 216 LSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYL 270
             +  +    L    R             A   L  +I     S+   V+ D    L  L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV---------------LIPALRTVGNIVTG 315
               N       E     R+  +      +                L+  L +  N    
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299

Query: 316 DDMQTQCVIEYQALPCLLNL-LSGNYKKSIKKEACWTVSNITAGNREQIQAVIE------ 368
                + + +   L  L  + ++      I  E   TVS +  G +              
Sbjct: 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN 359

Query: 369 ----ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 409
               A ++  +  + E   F ++    +            Q + +
Sbjct: 360 PPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 29/177 (16%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
               +  +L  D   L++  A+ +    +GT  ++ V        +    +   +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            AV ALG +                +  ++  L+      +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
                 A+  L  L     D V   A  ALS +     +K+         P++A+  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN--------PQVADIN 690

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 51/334 (15%), Positives = 110/334 (32%), Gaps = 34/334 (10%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +       +VP  + F+   ++    + +  A  A   I  G        +   A+P  +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNAT 223
           +L+  PS  VR+ A W +G I        +  ++   L PLL  L      +  +  N  
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283
           W  S+      +   D          + + S+ + ++              N+   +  E
Sbjct: 472 WAFSSLAEAAYE-AADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530

Query: 284 A-----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
           +         +     +  +  V++  L+ V        +Q +  I+  +     N L  
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQV--------LQMESHIQSTSDRIQFNDLQS 582

Query: 339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAE--FDIKKEAAWAISN 396
                     C T+ N+    + Q    I   ++  L+ + ++      ++++A  A+S 
Sbjct: 583 L--------LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST 634

Query: 397 ATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 430
                  E +K++  +     L   L       V
Sbjct: 635 LVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQV 666

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 52/326 (15%), Positives = 92/326 (28%), Gaps = 37/326 (11%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL---VLSQ 200
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +             Q
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 201 GGLVPLLAQLNGQPKLSML-----------------------RNATWTLSNFCRGKPQPP 237
           G      ++   +  L  L                       + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           S  V   A  TVG I     +       +    L CL+  LS      +    CW  S++
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAE--PRVASNVCWAFSSL 477

Query: 356 TAGNREQIQAVIEANIIGPLVALLEN 381
                E     +  +   P    L +
Sbjct: 478 AEAAYEAAD--VADDQEEPATYCLSS 501

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 47/282 (16%), Positives = 80/282 (28%), Gaps = 33/282 (11%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS---- 199
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +              
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 200 ---------------QGGLVPLLAQLN-------GQPKLSMLRNATWTLSNFCRGKPQPP 237
                             LVP+L Q              +  + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLS 337
           S  V   A  TVG I     +       +    L CL+  LS
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	530
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.85
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.79
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.78
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.76
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.75
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.74
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.7
3grl_A	651	General vesicular transport factor P115; vesicle t	99.7
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.69
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.67
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.67
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.63
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.62
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.6
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.59
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.58
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.58
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.57
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.53
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.45
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.44
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.44
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.43
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.41
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.41
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.28
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.14
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.09
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.07
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.94
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.93
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.86
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.85
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.84
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.84
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.81
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.77
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.75
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.68
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.61
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.54
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.5
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.5
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.48
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.47
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.38
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.36
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.35
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.23
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.22
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.16
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.15
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.15
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.13
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.1
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.08
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.85
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.76
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.7
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.67
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.52
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.49
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.42
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.34
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.32
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.31
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.2
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.18
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.11
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.92
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.78
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.52
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.28
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.28
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.24
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.21
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.05
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.0
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.98
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.45
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.31
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.15
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.05
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.0
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.95
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.86
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.66
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.14
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.81
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.42
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	92.88
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.72
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	91.59
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.54
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	87.62
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	87.01
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	86.66
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	86.64
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	86.57
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	86.32
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	85.08
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	85.03
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	85.0
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	84.8
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	84.73
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	84.29
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	82.81
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	82.65
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	81.4
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	80.16

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=4.4e-76  Score=608.95  Aligned_cols=518  Identities=46%  Similarity=0.748  Sum_probs=404.2

Q ss_pred             CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCC-CCccCCCCCchhhhcCCHHH
Q 009622            1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQ-PLANDVNAPGTAKKLENLPV   77 (530)
Q Consensus         1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~l~~   77 (530)
                      |+++++. .+++|+++||+ +++++|+|+||++++++|||+||++.+.|||+.....+. .++..............++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            7787776 67899999998 899999999999999999999999999999987442222 11221111111222247899


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009622           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (530)
Q Consensus        78 l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  157 (530)
                      +++.++|+|++.++.|+..++++++.+.+++++.+++.|++|.|+++|..++++.++.+|+|+|+|++.++++.+..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999998888999999999999999999987666999999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhhhccCC
Q 009622          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       158 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~L~~~~  233 (530)
                      .|++|.|+.+|.+++..+++.|+|+|+||+.+++.+|+.+...|++++|+.++....    ...+.+.++|++++++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999995322    2457889999999999987


Q ss_pred             -CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       234 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                       +........+++|.|+.++.+++++++..++|+|++++....+..+.++..|+++.|+.+|.+.++.++.+++++|+|+
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             5556667789999999999999999999999999999999988888899999999999999999999999999999999


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHH
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAW  392 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  392 (530)
                      +.+++.....+++.|+++.|..+|.++ ++.++++|+|+|+|++.+++.+...+++.|++|.|+.++.+++++++.+|+|
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence            999999999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHH
Q 009622          393 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE  472 (530)
Q Consensus       393 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  472 (530)
                      +|+|++.+++++++.++++.|++++|+++|.++|++++..++++|.+|+..+++..     ..+.+...|+++||+++|+
T Consensus       400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie  474 (529)
T 3tpo_A          400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIE  474 (529)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTCHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-----ChHHHHHHHHHCCcHHHHH
Confidence            99999998899999999999999999999999999999999999999999887643     3577899999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhCCCCCCCC---CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009622          473 SLQTHDNAEIYEKSVKLLETYWLDDEDET---MPPGDASQPGFGFGGNGNPPAPSGGFNF  529 (530)
Q Consensus       473 ~l~~~~~~~v~~~a~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (530)
                      .||+|+|++||++|..||++||+.+++|+   .|++.+  ++|+|+.++   .++|+|||
T Consensus       475 ~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~f~f  529 (529)
T 3tpo_A          475 ALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS--EGFAFQVQD---GAPGTFNF  529 (529)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHC--------------------------------------
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCC--cccccCCCC---CCCCCCCC
Confidence            99999999999999999999998766554   576553  379998665   46789999

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.4e-65  Score=524.45  Aligned_cols=490  Identities=46%  Similarity=0.753  Sum_probs=393.7

Q ss_pred             hhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCC
Q 009622           28 RREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSP  107 (530)
Q Consensus        28 ~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~  107 (530)
                      .|....++.|+++++....+.++...+.+.....+ ........-..++.+++.++|+|++.|+.|+..+|+++|.+++|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p   91 (510)
T 3ul1_B           13 PRGSGMLETAAALFERNHMDSPDLGTDDDDLAMAD-IGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP   91 (510)
T ss_dssp             -----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred             cCCcccHHHHHHHHHhhccCCccccCCccccchhh-hccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence            34456677888888777777776654333321111 11111111247899999999999999999999999999998899


Q ss_pred             cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhh
Q 009622          108 PIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (530)
Q Consensus       108 ~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~  187 (530)
                      +++.+++.|++|.|+++|+.++++.+|.+|+|+|+||++++++.+..+++.|++|.|+.+|.+++..+++.|+|+|+||+
T Consensus        92 pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa  171 (510)
T 3ul1_B           92 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA  171 (510)
T ss_dssp             CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999987666899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHH
Q 009622          188 GDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTD  262 (530)
Q Consensus       188 ~~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~  262 (530)
                      .+++.+|+.+.+.|++++|+.++....    ...+++.++|++++++.+. +........+++|.|+.++.+++++++..
T Consensus       172 ~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~  251 (510)
T 3ul1_B          172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD  251 (510)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             hCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999999999994322    2457889999999999987 55566677899999999999999999999


Q ss_pred             HHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch
Q 009622          263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK  342 (530)
Q Consensus       263 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  342 (530)
                      ++|+|++++....+..+.+...|+++.|+.+|.+.+..++..++++|+|++.+++..+..+++.|+++.|..+|.++ ++
T Consensus       252 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~  330 (510)
T 3ul1_B          252 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KT  330 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SH
T ss_pred             HHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CH
Confidence            99999999999888888899999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcc
Q 009622          343 SIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL  422 (530)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  422 (530)
                      .+++.|+|+|+|++.+++.+...+++.|+++.|+.++.+++++++++|+|+|+|++.+++.+++.++++.|++++|+++|
T Consensus       331 ~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL  410 (510)
T 3ul1_B          331 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL  410 (510)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC-
Q 009622          423 VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET-  501 (530)
Q Consensus       423 ~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~~-  501 (530)
                      +++|++++..++++|.+|++.+++..     ..+.++.+|+++||+++|+.||+|+|++||++|..||++||+.+++++ 
T Consensus       411 ~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~  485 (510)
T 3ul1_B          411 SAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQ  485 (510)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhHhcc-----chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccc
Confidence            99999999999999999999887644     357789999999999999999999999999999999999999776654 


Q ss_pred             --CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009622          502 --MPPGDASQPGFGFGGNGNPPAPSGGFNF  529 (530)
Q Consensus       502 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (530)
                        .|++.+  ++|.|++++   .++++|||
T Consensus       486 ~~~~~~~~--~~~~~~~~~---~~~~~~~~  510 (510)
T 3ul1_B          486 NVVPETTS--EGFAFQVQD---GAPGTFNF  510 (510)
T ss_dssp             ------------------------------
T ss_pred             ccCCCCCc--cccccCCCC---CCCCCCCC
Confidence              566543  479998766   57789999

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=5.8e-65  Score=527.77  Aligned_cols=501  Identities=80%  Similarity=1.253  Sum_probs=404.2

Q ss_pred             CCCCCCCCchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHH
Q 009622            1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA   80 (530)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   80 (530)
                      |+++|+.++++|+++||++++++|+|+||+++.++|||+||++.+.|||++....+.. +............+.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~l~~lv~   81 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAP-VPASAATGVDKKLESLPAMIG   81 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccc-cccccccchhhhHHHHHHHHH
Confidence            6778877889999999999999999999999999999999999999999974322211 000111112223467999999


Q ss_pred             hhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009622           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (530)
Q Consensus        81 ~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~  160 (530)
                      .|.++++.++..|++.|+++++....++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus        82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~  161 (528)
T 4b8j_A           82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA  161 (528)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence            99999999999999999999988755888999999999999999998765899999999999999988999999999999


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009622          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (530)
Q Consensus       161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  240 (530)
                      ++.|+.+|.++++.+++.|+|+|++|+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+......
T Consensus       162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  241 (528)
T 4b8j_A          162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ  241 (528)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence            99999999999999999999999999999888999999999999999999667789999999999999999887777778


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009622          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (530)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~  320 (530)
                      ..+++|.|+.++.+.++.++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus       242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  321 (528)
T 4b8j_A          242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT  321 (528)
T ss_dssp             HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence            89999999999999999999999999999999888888889999999999999999999999999999999999999888


Q ss_pred             HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      +.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+++..+..+++.|+++.|+.++.+++++++..|+|+|+|++..
T Consensus       322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            89999999999999998765789999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009622          401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA  480 (530)
Q Consensus       401 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  480 (530)
                      ++++...++++.|+++.|+.+|..++++++..++++|.+++..++......+...+.+...+++.||+++|+.|++|+++
T Consensus       402 ~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~  481 (528)
T 4b8j_A          402 GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNN  481 (528)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCH
Confidence            78899999999999999999999999999999999999999988764432222356789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCC
Q 009622          481 EIYEKSVKLLETYWLDDEDETM  502 (530)
Q Consensus       481 ~v~~~a~~il~~~~~~~~~~~~  502 (530)
                      +++++|..++++||+.+++++.
T Consensus       482 ~v~~~a~~il~~~~~~e~~~~~  503 (528)
T 4b8j_A          482 EIYEKAVKILEAYWMDEEDDTM  503 (528)
T ss_dssp             HHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHHHHCCCcccccc
Confidence            9999999999999998777663

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.9e-59  Score=484.84  Aligned_cols=491  Identities=54%  Similarity=0.825  Sum_probs=424.5

Q ss_pred             CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcccc---CCCCCccCC---CCCchh-hhcCCHHHH
Q 009622            8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLANDV---NAPGTA-KKLENLPVM   78 (530)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~---~~~~~~~~~---~~~~~~-~~~~~l~~l   78 (530)
                      .++.|++.||+ + ++++|+|+||++..++|||+||++.+.|||+....   .+..++.+.   ...... ...+.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l   92 (530)
T 1wa5_B           13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   92 (530)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence            56789999999 8 89999999999999999999999999999997532   111001000   011110 122579999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009622           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      +..|+++++..+..|+..|+++++....+++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.
T Consensus        93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~  172 (530)
T 1wa5_B           93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  172 (530)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence            99999999999999999999999876567788899999999999999987339999999999999999888999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009622          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (530)
Q Consensus       159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~  237 (530)
                      |+++.|+.+|.++++.+++.|+|+|++|+.+.+..++.+...|+++.|+.++ .+.+..++..++|+|++|+... +...
T Consensus       173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~  251 (530)
T 1wa5_B          173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  251 (530)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999999999999999888999999999999999999 5588999999999999999987 6667


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009622          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~  317 (530)
                      .....+++|.|+.++.+.++.++..++|+|++++...+.....+++.|+++.|+.+|.+.++.++..|+++|++++.+++
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~  331 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  331 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence            77789999999999999999999999999999998888778888899999999999999999999999999999999988


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      ...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++..++.+++.|+++.|+.++.+++++++..|+|+|+|+
T Consensus       332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l  410 (530)
T 1wa5_B          332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  410 (530)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            8888889999999999999998 999999999999999999899999999999999999999999999999999999999


Q ss_pred             hcCCCH--HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh
Q 009622          398 TSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ  475 (530)
Q Consensus       398 ~~~~~~--~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  475 (530)
                      +..+.+  +...++++.|+++.|+.++...++.++..++++|.+++..++..........++++..|.+.||+++|..|+
T Consensus       411 ~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~  490 (530)
T 1wa5_B          411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ  490 (530)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG
T ss_pred             HhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH
Confidence            987666  888999999999999999999999999999999999998876532110012466899999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCCCC
Q 009622          476 THDNAEIYEKSVKLLETYWLDDEDE  500 (530)
Q Consensus       476 ~~~~~~v~~~a~~il~~~~~~~~~~  500 (530)
                      +|++++|++.|..+|++||..+++|
T Consensus       491 ~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          491 QNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             GCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             cCCCHHHHHHHHHHHHHHCCccccc
Confidence            9999999999999999999876654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.1e-46  Score=383.08  Aligned_cols=426  Identities=59%  Similarity=0.938  Sum_probs=385.6

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~-g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .++.+++.++++++.++..|+..|+++++...++..+.++.. |++|.|+++|.+++++.++..|+++|.+++.++++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            378999999999999999999999999875446677888887 9999999999988349999999999999999888888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..+..+...|+++.++.++..+.+..++..++|+|++++..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            88899999999999999999999999999999999998888999999999999999995457899999999999999987


Q ss_pred             C-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          233 K-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       233 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      . +........+++|.|+.++.++++.++..++|+|.+++...++....+...|+++.|+.++.+.++.++..|+++|++
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            6 555566668999999999999999999999999999998877777888889999999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHH
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAA  391 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  391 (530)
                      ++.+.+...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.+++...+.+++.|+++.|+.++.++++++|..|+
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~  339 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA  339 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9998888888888999999999999998 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHH
Q 009622          392 WAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI  471 (530)
Q Consensus       392 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  471 (530)
                      |+|+|++..++++..+.+++.|+++.|+.+++.++++++..++++|.+++..++..........++|...|.+.||+++|
T Consensus       340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l  419 (450)
T 2jdq_A          340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI  419 (450)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHH
Confidence            99999998777888899999999999999999999999999999999999877653211111245789999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhCCCCCCC
Q 009622          472 ESLQTHDNAEIYEKSVKLLETYWLDDEDE  500 (530)
Q Consensus       472 ~~l~~~~~~~v~~~a~~il~~~~~~~~~~  500 (530)
                      ..|++|++.++++.|..+|++||+.++++
T Consensus       420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          420 EFLQSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            99999999999999999999999877654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=6.2e-40  Score=343.16  Aligned_cols=367  Identities=15%  Similarity=0.125  Sum_probs=318.0

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh-
Q 009622           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-  149 (530)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~-  149 (530)
                      .++.++++|.++  |++++..|++.|..+...  .+....++ +.|++|.|++++++++ +.+++.|+|+|+||+.+++ 
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence            367788888887  899999999999998644  34444444 6899999999999987 8999999999999998652 


Q ss_pred             ----------------------------hh---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh
Q 009622          150 ----------------------------EH---TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL  198 (530)
Q Consensus       150 ----------------------------~~---~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~  198 (530)
                                                  ..   .+.+++.|++|.|+.+|+++++.++++|+|+|+||+.+. .+|..+.
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv  533 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVV  533 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence                                        11   267889999999999999999999999999999999764 4899999


Q ss_pred             hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC-h--hhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCC
Q 009622          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-F--DQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGT  274 (530)
Q Consensus       199 ~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~-~--~~~~~~l~~L~~ll~~~d-~~v~~~a~~~l~~l~~~~  274 (530)
                      +.|++++|+.++ .+.+...++.|+|+|.+|+....... +  ....+++|.|+.+|.++. ......++|+|.||+..+
T Consensus       534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~  612 (810)
T 3now_A          534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN  612 (810)
T ss_dssp             HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence            999999999999 66778899999999999997642111 1  123568999999998653 344578999999999998


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      ++..+.+++.|+++.|+.++.++++.++..|+++++|++.+.+.+.+.+...|.++.|+.++.++ +..++++|+|+|+|
T Consensus       613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan  691 (810)
T 3now_A          613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI  691 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999997665544442379999999999998 99999999999999


Q ss_pred             HhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC---ChHHH
Q 009622          355 ITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP---DPRIV  430 (530)
Q Consensus       355 l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~---~~~v~  430 (530)
                      ++.+++.+++.+++ .|+++.|+.++.+++.++++.|+|+|.|++.+ +.++..++.+.|++++|+.+++.+   +++++
T Consensus       692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~  770 (810)
T 3now_A          692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAR  770 (810)
T ss_dssp             HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH
T ss_pred             HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHH
Confidence            99988899999998 89999999999999999999999999999985 578899999999999999999755   78999


Q ss_pred             HHHHHHHHHHHhhhhhh
Q 009622          431 TVCLEGLENILKVGEAE  447 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~  447 (530)
                      ..++++|.++++++.-.
T Consensus       771 e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          771 EVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhCCCcc
Confidence            99999999999988653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=6.9e-40  Score=325.31  Aligned_cols=368  Identities=18%  Similarity=0.166  Sum_probs=295.6

Q ss_pred             hhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcH-HHHHHcCCHHHHHHhhcCCCC-----------HHHHHHH
Q 009622           70 KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDY-----------PQLQFEA  137 (530)
Q Consensus        70 ~~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~v~~Lv~ll~~~~~-----------~~i~~~a  137 (530)
                      .+++.++.++..+.+.|++.   ..+.|..+   +.+++. ..+++.|++|.|+++|+..+.           ++++.+|
T Consensus        29 ~~~~~~~~l~~~~~~~~~~~---~~~~ll~~---~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a  102 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKDD---MSRTLLAM---SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA  102 (458)
T ss_dssp             ----------------CCHH---HHHHHHHH---HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHHH---HHHHHHHH---HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence            35578899999999888873   33334433   334444 788999999999999997432           7999999


Q ss_pred             HHHHHHHhcCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHhhhCCCchh
Q 009622          138 AWALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPRC  193 (530)
Q Consensus       138 ~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----~~~-------~a~~~L~nl~~~~~~~  193 (530)
                      +|+|+||+.+.++..+...+.|++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +.+
T Consensus       103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~  181 (458)
T 3nmz_A          103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH  181 (458)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence            999999999999999988888888          66777776642  12     444       999999999776 779


Q ss_pred             hhhHhhcCChHHHHHhhcC----------CCchhHHHHHHHHhhhhccCCCCCChhh--hhchHHHHHHhhcCCChhHHH
Q 009622          194 RDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVLT  261 (530)
Q Consensus       194 ~~~i~~~~~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~~  261 (530)
                      |+.+.+.|++++|+.++..          +.++.+++.|+|+|.|||.+++......  ..|++|.|+.+|.+++++++.
T Consensus       182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~  261 (458)
T 3nmz_A          182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ  261 (458)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence            9999999999999999931          2357889999999999998864333222  467799999999999999999


Q ss_pred             HHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCCchhHHHHHHHHhHhhcCCchhhHHHh-hcCchHHHHHhhcC
Q 009622          262 DACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSG  338 (530)
Q Consensus       262 ~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~  338 (530)
                      .++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.+
T Consensus       262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~  341 (458)
T 3nmz_A          262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  341 (458)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999985 566778888999999999975 556889999999999999986655444555 78999999999998


Q ss_pred             CCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009622          339 NYKK---SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       339 ~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      ..+.   .+++.|+|+|.|++.   +++++++.+.+.|+++.|+.+|.+++..++++|+|+|.|++.. ++++...+++.
T Consensus       342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~  420 (458)
T 3nmz_A          342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDM  420 (458)
T ss_dssp             CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence            7222   499999999999997   7889999999999999999999999999999999999999975 67899999999


Q ss_pred             CChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009622          413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~  445 (530)
                      |+++.|+++|.++++.++..++++|.+|+...+
T Consensus       421 G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          421 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             THHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999997653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=6.3e-39  Score=324.17  Aligned_cols=365  Identities=19%  Similarity=0.209  Sum_probs=311.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  196 (530)
                      .+|.|+.+|.+++ +.++..|+++|.+++.+++..+..+++.|++|.|+++|+++++.++..|+|+|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4899999999998 899999999999999877788889999999999999999999999999999999999988889999


Q ss_pred             HhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc--------C--------CChhHH
Q 009622          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL  260 (530)
Q Consensus       197 i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~  260 (530)
                      +.+.|++++|+++|..+.+.++++.++|+|+||+........... |++|.|+.++.        +        .+..+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995478899999999999999998443333444 99999999993        2        356777


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CCchhHHHHHHHHhHhhcC------------------
Q 009622          261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG------------------  315 (530)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~~------------------  315 (530)
                      ..++|+|.|++.. ++....+.+. |+++.|+.+|.+      .+..+...++.+|.|++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 6777888887 999999999985      4567888899999988621                  


Q ss_pred             --------------------------------CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 009622          316 --------------------------------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--  361 (530)
Q Consensus       316 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  361 (530)
                                                      .+...+.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1223445667788999999998775789999999999999986533  


Q ss_pred             -HH-HHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh------HHHHH
Q 009622          362 -QI-QAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP------RIVTV  432 (530)
Q Consensus       362 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~------~v~~~  432 (530)
                       .+ +..+ +.|++|.|+++|.+++.+++++|+|+|.|++.+   .....++..|++++|+++|...++      +++..
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             23 4445 589999999999999999999999999999984   244566777899999999987643      68889


Q ss_pred             HHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCC
Q 009622          433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~~~~~  498 (530)
                      ++++|.+++.....           +...+.++||++.|.+|+.|. ++++++.|..+|..||.+.+
T Consensus       397 ~l~~l~ni~~~~~~-----------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCHH-----------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99999999865433           578889999999999999999 99999999999999998654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.9e-38  Score=327.67  Aligned_cols=368  Identities=25%  Similarity=0.368  Sum_probs=327.2

Q ss_pred             cCCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      .+.+|.|++.|.+ +++.+|..|+++|.++++.. ......+++.|++|.|+.++.+++ +.++..|+|+|+||+.++++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence            3789999999974 56899999999999999874 556678889999999999999998 99999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009622          151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~  225 (530)
                      .+..+++.|+++.|+.+|..++     ..+...++|+|++++.+...........++++.|+.++ .+.+++++..++|+
T Consensus       196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a  274 (529)
T 3tpo_A          196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  274 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            9999999999999999997643     45788999999999987765555555677899999999 88899999999999


Q ss_pred             hhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHH
Q 009622          226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (530)
Q Consensus       226 L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~  304 (530)
                      |++++..... .......+++|.|+.++.+++..++..++++|++++..++.....+++.|+++.|+.+|.++++.++..
T Consensus       275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence            9999987632 223445789999999999999999999999999999988888888999999999999999999999999


Q ss_pred             HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCc
Q 009622          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAE  383 (530)
Q Consensus       305 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~  383 (530)
                      |+|+|+|++.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.|
T Consensus       355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999 99999999999999997 67889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcC-----CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          384 FDIKKEAAWAISNATSG-----GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       384 ~~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                      ++++..++++|.|+...     ........+.+.|+++.|..+..+++.++...|..+|.+.+..
T Consensus       434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~  498 (529)
T 3tpo_A          434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV  498 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            99999999999999742     2233445566889999999999999999999999988887643

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=9.9e-39  Score=327.78  Aligned_cols=367  Identities=25%  Similarity=0.376  Sum_probs=326.5

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.+|.|+++|.+ +++.+|..|+++|.++++++ .+..+.+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++.
T Consensus       100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            689999999985 56899999999999999874 567788899999999999999988 999999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009622          152 TKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L  226 (530)
                      +..+.+.|+++.|+.++..++     ..+...++|+|++++.+...........++++.|++++ .+.+.+++..++|+|
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL  256 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  256 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence            999999999999999998743     35688999999999987765555555677899999999 888999999999999


Q ss_pred             hhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHH
Q 009622          227 SNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (530)
Q Consensus       227 ~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a  305 (530)
                      ++|+...... ......+++|.|+.++.+.+..++..++++|++++..++.....+++.|+++.|+.+|.+++..++..|
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A  336 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  336 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence            9999875322 234457899999999999999999999999999999988888889999999999999999999999999


Q ss_pred             HHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCch
Q 009622          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEF  384 (530)
Q Consensus       306 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (530)
                      +|+|+|++.++..+...+++.|+++.|+.++.++ +..+|++|+|+|+|++. ++.+++..+++.|+++.|+.+|.+.|+
T Consensus       337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~  415 (510)
T 3ul1_B          337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT  415 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence            9999999999999999999999999999999999 99999999999999998 688899999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          385 DIKKEAAWAISNATSGG-----THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                      +++..++++|.|+...+     .......+.+.|+++.|..+..+++.++...|..+|.+.+..
T Consensus       416 ~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            99999999999997521     234455566889999999999999999999999998887744

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=7.5e-37  Score=317.16  Aligned_cols=402  Identities=18%  Similarity=0.199  Sum_probs=341.6

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.+++.+.++++.++..|++.|.+++... ......+.+.|++|.|++++.+++ +.++..++.+|.+++.++++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            68999999999999999999999999998774 455667778999999999999987 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+.+.|+++.|+.++++. ....+..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            9999999999999999764 456777889999999865 45788889999999999999 66689999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV  309 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a~~~L  309 (530)
                      ..+..  ....+++|.|+.++.+.+++++..++|+|++++..+++....+.+.|+++.|+.++.+  .++.++..|+++|
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            86432  2346899999999999999999999999999999888788889999999999999976  3478999999999


Q ss_pred             hHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009622          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (530)
Q Consensus       310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  386 (530)
                      +|++.+++.   ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.+.. ....+.+.|+++.|+.++.++++++
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v  413 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHH
Confidence            999886543   345778899999999999988346999999999999998654 4478889999999999999888999


Q ss_pred             HHHHHHHHHH--hhcCC------------------CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          387 KKEAAWAISN--ATSGG------------------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       387 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      |++|+|++.|  +..++                  .++....+.+.|+++.|+.++.++++.++..+.++|.++....  
T Consensus       414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~--  491 (529)
T 1jdh_A          414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--  491 (529)
T ss_dssp             C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--
T ss_pred             HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--
Confidence            9988887777  22222                  3455567889999999999999999999999999999986432  


Q ss_pred             hhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622          447 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                                .++..+.+.||++.|..++.|+|++|+..|..++.++
T Consensus       492 ----------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          492 ----------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             ----------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                      2578889999999999999999999999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=320.19  Aligned_cols=405  Identities=19%  Similarity=0.220  Sum_probs=346.3

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.+++.|.++++.++..|+++|.++++.. ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            68899999999999999999999999998874 456667778999999999999987 8889999999999998889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+.+.|+++.|+.++.+. ...++..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999874 467889999999999864 45788999999999999999 66789999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC--chhHHHHHHHH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALRTV  309 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~~~~~a~~~L  309 (530)
                      ..+..  ....+++|.|+.++.+.+++++..++|+|++++...+.....+.+.|+++.|+.++.+.+  +.++..|+++|
T Consensus       254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            76332  334689999999999999999999999999999988888888999999999999998743  78999999999


Q ss_pred             hHhhcCCch--h-hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhH
Q 009622          310 GNIVTGDDM--Q-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDI  386 (530)
Q Consensus       310 ~nl~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  386 (530)
                      ++++...+.  . ...+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+... ...+++.|+++.|++++.++++++
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v  410 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT  410 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence            999975442  2 334778899999999999873479999999999999987544 478889999999999998865555


Q ss_pred             HH----------------------HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          387 KK----------------------EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       387 ~~----------------------~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      |+                      .++.+|.+++.  +......+.+.|+++.|+.+|.+.++.++..++++|.++....
T Consensus       411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~  488 (644)
T 2z6h_A          411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  488 (644)
T ss_dssp             TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH
T ss_pred             hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH
Confidence            55                      45555555555  3355567789999999999999999999999999999987432


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHH------------------HHH--HHHHHHHhCCCCC
Q 009622          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI------------------YEK--SVKLLETYWLDDE  498 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v------------------~~~--a~~il~~~~~~~~  498 (530)
                                  .++..+.+.|+++.|..++.+++++|                  |..  +..+++.||..+.
T Consensus       489 ------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~  550 (644)
T 2z6h_A          489 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  550 (644)
T ss_dssp             ------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred             ------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence                        15788999999999999999999999                  444  6778899997653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.5e-37  Score=325.17  Aligned_cols=403  Identities=15%  Similarity=0.137  Sum_probs=332.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCC-CCcHHHHHH---cCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCC
Q 009622           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIR---SGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~-~~~~~~~~~---~g~v~~Lv~ll~~~--~~~~i~~~a~~~L~~l~~~~  148 (530)
                      ++.|+..++++++.++..|+..|.++.+... .+....+-+   ..+++.|+++|.++  + ++++..|+|+|.+++. .
T Consensus       332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~  409 (810)
T 3now_A          332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-D  409 (810)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-S
T ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-C
Confidence            4777777777777788888888888875321 111111111   23477899999887  5 8999999999999999 5


Q ss_pred             hhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-----------------------------hhh---h
Q 009622          149 SEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-----------------------------RCR---D  195 (530)
Q Consensus       149 ~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-----------------------------~~~---~  195 (530)
                      ++.+..++ +.|++|.|+.+|++++..++..++|+|+||+.+.+                             ..+   +
T Consensus       410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~  489 (810)
T 3now_A          410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT  489 (810)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence            66666666 57999999999999999999999999999997542                             122   5


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                      .+++.|+++.|+.++ .++++.+++.++|+|.||+.+.+........|++|.|+.++.+.++..+..++|+|++++...+
T Consensus       490 ~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~  568 (810)
T 3now_A          490 VLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN  568 (810)
T ss_dssp             HHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence            678899999999999 7889999999999999999765555556678999999999999999999999999999985433


Q ss_pred             HHHH--HHHHhCcHHHHHHhhCCCCc-hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009622          276 DKIQ--AVIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       276 ~~~~--~~~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      ....  .....++++.|+.+|.++.. ..+..|+++|+||+.+++...+.+++.|+++.|..++.++ ++.+++.|+|+|
T Consensus       569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L  647 (810)
T 3now_A          569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL  647 (810)
T ss_dssp             HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred             hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            2111  00113689999999987644 3456899999999999888888899999999999999998 999999999999


Q ss_pred             HHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhccCCCChHHH
Q 009622          353 SNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIV  430 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~v~  430 (530)
                      +|++.+. +....+++ .|.++.|+.++.+++..+|++|+|+|.|++.+ ++..++.+++ .|+++.|+.+|.+++.+++
T Consensus       648 ~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq  725 (810)
T 3now_A          648 CNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQ  725 (810)
T ss_dssp             HHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred             HHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence            9999865 45555554 78999999999999999999999999999986 5678899998 8999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC---CCHHHHHHHHHHHHHhC
Q 009622          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH---DNAEIYEKSVKLLETYW  494 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~v~~~a~~il~~~~  494 (530)
                      ..++++|.++...+..           ....+.+.|+++.|..|...   .+.++++.|...|+...
T Consensus       726 ~~A~~aL~NL~~~s~e-----------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          726 HRGIVIILNMINAGEE-----------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             HHHHHHHHHHHTTCHH-----------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHH-----------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence            9999999999985432           47888899999999999644   48999999999998764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.6e-37  Score=312.30  Aligned_cols=363  Identities=15%  Similarity=0.174  Sum_probs=303.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+|.++..|.+++++++..|+++|++++... .+....+++.|++|.|+++|.+++ +.++..|+|+|.|++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            6799999999999999999999999997552 344558889999999999999887 99999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc--------CC-------Cchh
Q 009622          154 VVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKLS  217 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~--------~~-------~~~~  217 (530)
                      .+++.|++|.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|++++.        ..       .+..
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 78899999999999999988 568888888 99999999992        11       3567


Q ss_pred             HHHHHHHHhhhhccCCCCCChhhhh-chHHHHHHhhcC------CChhHHHHHHHHHHHhccCC----------------
Q 009622          218 MLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHS------NDDEVLTDACWALSYLSDGT----------------  274 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~~~~~~~~~-~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~----------------  274 (530)
                      +++.++|+|+|||..+......... |++|.|+.++.+      .+..+.++++++|.+++...                
T Consensus       159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~  238 (457)
T 1xm9_A          159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence            8889999999999873222223333 999999999985      46678889999998886321                


Q ss_pred             ----------------------------------hHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchh
Q 009622          275 ----------------------------------NDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       275 ----------------------------------~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~  319 (530)
                                                        +...+.+++.++++.++.+|.+. ++.+++.|+|+|+|++.++...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                              01122344557788899998764 6889999999999999877543


Q ss_pred             h----HHHh-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch------hHHH
Q 009622          320 T----QCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF------DIKK  388 (530)
Q Consensus       320 ~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~~  388 (530)
                      .    +.++ +.|++|.|+.+|.++ +.+++++|+|+|+|++.+.  ..+.++..++++.|+++|..+++      ++..
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            2    3334 689999999999999 9999999999999998853  45567777899999999988743      6888


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhh
Q 009622          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~  444 (530)
                      .++++|.|+..+. +++...+.+.|+++.|+.++.++ ++++...|.++|.+++.+.
T Consensus       396 ~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          396 SACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            9999999999864 57888888999999999999999 8999999999999887543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1e-35  Score=308.21  Aligned_cols=368  Identities=24%  Similarity=0.335  Sum_probs=327.0

Q ss_pred             CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.+++.|.++ ++.++..|+++|.++++.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            6899999999987 8999999999999998763 345667788999999999999887 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..++..|+++.|+.++.+.+..++..++|+|++|+.+...........++++.|+.++ .+.+..++..++|+|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999998999999999999999977622344556678999999999 77789999999999999998


Q ss_pred             CCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622          232 GKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       232 ~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~  310 (530)
                      ..+. .......+++|.|+.++.+.++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7532 222334589999999999999999999999999999888888888889999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR--EQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      +++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ .+  +....+++.|+++.|+.++.++++.++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  445 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  445 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99998888888888999999999999988 999999999999999984 55  788889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ..|+++|.+++..+..          ..+..+.+.|+++.|..++.++++.+...+..+|.+++...
T Consensus       446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            9999999999875321          24567788999999999999999999999999999888653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=4.8e-36  Score=304.62  Aligned_cols=367  Identities=25%  Similarity=0.317  Sum_probs=324.4

Q ss_pred             CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.+++.+.++ ++.++..|+++|.++++.. .+....+++.|++|.|++++.+++ +.++..|+++|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            4689999999988 8999999999999998763 345667778999999999999987 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      +..+++.|+++.|+.++.+ .+..++..++|+|++++.+. +..+..+ ..++++.|+.++ .+.+..++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999986 78999999999999999765 4333333 378999999999 678899999999999999


Q ss_pred             ccCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009622          230 CRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       230 ~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~  308 (530)
                      +...+ ........+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.++.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            98652 22233346899999999999999999999999999999888777778888999999999999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      |++++.+++...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888899999999999988 999999999999999985 78888889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ..|+++|.+++..+..          ..+..+.+.|+++.|..++.++++.++..++.+|.+++...
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            9999999999875322          24567778899999999999889999999999999988543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=8.3e-36  Score=308.90  Aligned_cols=367  Identities=24%  Similarity=0.326  Sum_probs=327.5

Q ss_pred             CCHHHHHHhhcCCC-hHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~~-~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.|++.|.+++ +.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            68999999999877 999999999999998763 456677888999999999999987 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622          152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      +..+...|+++.|+.+| .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.+..++..++|+|++++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 5688999999999999999876533 3445678999999999 7889999999999999999


Q ss_pred             cCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHH
Q 009622          231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT  308 (530)
Q Consensus       231 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~  308 (530)
                      ...+.. ......+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            775322 2334568999999999999999999999999999998888888899999999999999998 99999999999


Q ss_pred             HhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      |+|++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.++.+++++++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~  431 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV  431 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence            9999998888888899999999999999998 999999999999999985 78999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          388 KEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ..++++|.+++..+..          .....+.+.|+++.|..+..++++++...+..++.+++...
T Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            9999999999874322          35677778899999999999999999999999988877543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.1e-35  Score=301.41  Aligned_cols=365  Identities=18%  Similarity=0.194  Sum_probs=303.5

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Chhh
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~-~~~~  151 (530)
                      ..++.++++|.++++.+|..|+++|++++... .+....+++.|+||.|+++|.+++ +.++..|+|+|.||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            48899999999999999999999999998754 567778889999999999999988 99999999999999985 6899


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc-----------------CC
Q 009622          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ  213 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~-----------------~~  213 (530)
                      +..+++.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.. +++++|++++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999987 6789999999999999985 457777775 57999999872                 12


Q ss_pred             CchhHHHHHHHHhhhhccCCCC-CChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccCChHH--------
Q 009622          214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDGTNDK--------  277 (530)
Q Consensus       214 ~~~~~~~~a~~~L~~L~~~~~~-~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~~~~~--------  277 (530)
                      .+..++.+++|+|.||+...+. ..... ..|+++.|+.++.+      .+...+++++|+|.||+......        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3679999999999999987633 22222 36778899999874      46788999999999998652111        


Q ss_pred             -----------------HHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchh----hHHHhhcCchHHHHHh
Q 009622          278 -----------------IQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQ----TQCVIEYQALPCLLNL  335 (530)
Q Consensus       278 -----------------~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~----~~~~~~~~~l~~L~~l  335 (530)
                                       +..+.+.++++.++.+|. +.++.+++.|+++|.|++.+....    ...+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             111223355778889995 467899999999999999876432    2234467899999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--------chhHHHHHHHHHHHhhcCCCHHHHH
Q 009622          336 LSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--------EFDIKKEAAWAISNATSGGTHEQIK  407 (530)
Q Consensus       336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~  407 (530)
                      |.++ +..+++.|+|+|+||+.+..  .+..+..|++|.|+.+|.++        ..++...|+++|.|++.. ++++.+
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9999 99999999999999998643  23455789999999999876        357899999999999976 678999


Q ss_pred             HHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHhhhh
Q 009622          408 FLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       408 ~l~~~~~l~~L~~lL~~~--~~~v~~~al~~l~~ll~~~~  445 (530)
                      .+.+.|+++.|+.++.+.  .+.++..|.++|.++..+.+
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            999999999999999986  78899999999999986543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1e-33  Score=304.09  Aligned_cols=405  Identities=19%  Similarity=0.212  Sum_probs=341.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|.+++ ..++..++.+|.+++.++++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            67899999999999999999999999998774 455566668999999999999877 8999999999999998889999


Q ss_pred             HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          153 KVVIDHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+++.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+...|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999998754 556778899999999754 4788888999999999999 67788999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-C-chhHHHHHHHH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-S-PSVLIPALRTV  309 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~-~~~~~~a~~~L  309 (530)
                      ..+.  .....+++|.|+.++.+.++.++..++|+|++++...+.....+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7633  223468999999999999999999999999999998888888899999999999999863 3 38999999999


Q ss_pred             hHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchh-
Q 009622          310 GNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD-  385 (530)
Q Consensus       310 ~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~-  385 (530)
                      ++|+......   ...+...++++.|+.+|.++..+.+++.|+|+|+|++.+. .....+.+.|+++.|+.++.+++++ 
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~  546 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT  546 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence            9998765432   3467788999999999998834599999999999999864 4447788999999999999876544 


Q ss_pred             ---------------------HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          386 ---------------------IKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       386 ---------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                                           ++..++.+|.+++.  +++....+.+.|+++.|+.+|.+.++.++..++.+|.++....
T Consensus       547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~  624 (780)
T 2z6g_A          547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  624 (780)
T ss_dssp             HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH
T ss_pred             HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH
Confidence                                 45566667777765  4566677889999999999999999999999999999987432


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHH--------------------HHHHHHHhCCCCC
Q 009622          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK--------------------SVKLLETYWLDDE  498 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~--------------------a~~il~~~~~~~~  498 (530)
                                  .++..|.+.|+++.|..|+.+++++|+..                    +..++..||..+.
T Consensus       625 ------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~  686 (780)
T 2z6g_A          625 ------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  686 (780)
T ss_dssp             ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----
T ss_pred             ------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCC
Confidence                        25888999999999999999999999544                    5567777776543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=7.3e-35  Score=295.30  Aligned_cols=366  Identities=18%  Similarity=0.210  Sum_probs=303.7

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCC-Cch
Q 009622          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPR  192 (530)
Q Consensus       114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~  192 (530)
                      ..+.+|.|+++|.+++ +.++..|+++|.+++.++.+.+..+++.|+||.|+++|.+++..+++.|+|+|.||+.+ ++.
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            3578999999999988 99999999999999998999999999999999999999999999999999999999985 678


Q ss_pred             hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc------------------C
Q 009622          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------------------S  254 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~------------------~  254 (530)
                      .+..+.+.|++++|+.+|....+.++++.++++|++|+..... ......+++|.|+.++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~-k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI-KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG-HHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999996556889999999999999986433 33334678999998761                  2


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CCchhHHHHHHHHhHhhcCCc----------
Q 009622          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDD----------  317 (530)
Q Consensus       255 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~~~~~a~~~L~nl~~~~~----------  317 (530)
                      .++.++.++.++|.||+...++..+.+++. |+++.|+.++.+      .+...++.|+++|.||+....          
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            367999999999999999887766777764 667899999864      466789999999999986521          


Q ss_pred             ---------------hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HhCcHHHHHHH
Q 009622          318 ---------------MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR---EQIQAVI-EANIIGPLVAL  378 (530)
Q Consensus       318 ---------------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L~~l  378 (530)
                                     .....+.+.++++.|+.+|....++.+++.|+|+|.|++.+..   ...+..+ +.+++|.|+++
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                           1112223446678889999654489999999999999998652   2333343 57889999999


Q ss_pred             HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--------ChHHHHHHHHHHHHHHhhhhhhhhc
Q 009622          379 LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--------DPRIVTVCLEGLENILKVGEAEKNL  450 (530)
Q Consensus       379 l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--------~~~v~~~al~~l~~ll~~~~~~~~~  450 (530)
                      |.+++.+++..|+|+|.||+.+..  . +.++..|+++.|+.+|...        ..+++..++++|.+|+...+.    
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~--~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~----  436 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDAR--N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE----  436 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCS--C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChh--H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence            999999999999999999998653  2 2345789999999999876        357888999999999866543    


Q ss_pred             CCCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHHHHHHHHHhCC
Q 009622          451 GNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYWL  495 (530)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~a~~il~~~~~  495 (530)
                             ....+.+.|++..|..|..+.  .+.+.+.|..++..+|.
T Consensus       437 -------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          437 -------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             -------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence                   366778899999999998775  89999999999998875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=286.89  Aligned_cols=327  Identities=17%  Similarity=0.169  Sum_probs=276.7

Q ss_pred             hcCCHHHHHHhhcCC------------ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCH----------HHHHHhhcCC
Q 009622           71 KLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLRE  128 (530)
Q Consensus        71 ~~~~l~~l~~~l~s~------------~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v----------~~Lv~ll~~~  128 (530)
                      +-+.+|.|+++|+..            ++++++.|+++|.+++++. .+......+.|++          +.+++++.+.
T Consensus        68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            448999999999963            3699999999999999986 5556666677777          6777888765


Q ss_pred             C-CHH-----HHH-------HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHH
Q 009622          129 D-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALG  184 (530)
Q Consensus       129 ~-~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~  184 (530)
                      . ..+     ++.       +|+|+|.|++. ++++++.+++.|+++.|+.+|..           .++.++..|+|+|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~  225 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT  225 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence            2 112     444       99999999977 69999999999999999999941           34678999999999


Q ss_pred             hhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhh-cCCChhHH
Q 009622          185 NIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEVL  260 (530)
Q Consensus       185 nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~  260 (530)
                      ||+.+.+..+..+. ..|++++|+.+| .+.+.+++..++|+|.||+...  .........|++|.|+.+| .+.+..++
T Consensus       226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            99988876676665 456699999999 6889999999999999999852  2333445579999999975 55688999


Q ss_pred             HHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHH
Q 009622          261 TDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCL  332 (530)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~l~~L  332 (530)
                      ..++.+|++|+...++....+. ..|+++.|+.+|.+.+.    .++..|+++|.|++.   +++...+.+++.|+++.|
T Consensus       305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L  384 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL  384 (458)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence            9999999999984544444455 78999999999998754    489999999999997   788888899999999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009622          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      +.+|.++ +..++++|+|+|+|++.+++++...+++.|+++.|+.++.+++.++++.|+++|.||+.+.
T Consensus       385 v~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          385 LQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999998 8999999999999999888999999999999999999999999999999999999999864

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.6e-33  Score=292.17  Aligned_cols=403  Identities=17%  Similarity=0.143  Sum_probs=337.6

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.+++.|.+ ++++++..|+..|+++...  ......+.+.|++|.|++++.+++ +.++..|+++|.+++..++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            468999999975 4899999999999998654  457778889999999999999988 999999999999999977778


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+.+.|+++.|+.++.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++....+......++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999998888899999999999999999766677788889999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      ...........++++.|+.++.+.++.++..++|+|.+++.......   ...++++.|+.++.+.++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            65444445557899999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcCc-hhH
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI  386 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v  386 (530)
                      ++.+++.....+.+.|+++.|+.++.+.. ++.++..|+++|+|++.+++.   ....+.+.|+++.|+.++.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            99988888888999999999999998631 479999999999999886433   3567788999999999999886 699


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH----------------------HHhhh
Q 009622          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN----------------------ILKVG  444 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~----------------------ll~~~  444 (530)
                      +..++|+|.|++.+.  +....+.+.|+++.|+.++.+.+++++..+.+++.+                      +....
T Consensus       373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~  450 (529)
T 1jdh_A          373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence            999999999999853  444788899999999999987776666655555444                      33221


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                                  ..+..+.+.|+++.|..+..+++++++..|...+..+..
T Consensus       451 ------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          451 ------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             ------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             ------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence                        125667889999999999999999999999998887653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=288.20  Aligned_cols=403  Identities=17%  Similarity=0.163  Sum_probs=341.9

Q ss_pred             CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.+++.|.++ +++++..|+.+|+++...  ......+.+.|+++.|+++|.+++ +.++..|+++|.+++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            4689999999865 899999999999987654  446778888999999999999988 999999999999999977778


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+++.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+|+.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999899999999999999987888899999999999999999666667888999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.++.+.++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6555555556789999999999999999999999999998754321   1112689999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCH--HHHH-HHHHhCcHHHHHHHHhcCc-hhH
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNR--EQIQ-AVIEANIIGPLVALLENAE-FDI  386 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~-~~v  386 (530)
                      ++.+++.....+.+.|+++.|+.++.+.. .+.++..|+++|+|++..++  ...+ .+.+.|+++.|+++|.+++ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            99988888888999999999999998742 37999999999999997533  2333 4778899999999999874 799


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------hHHHHHHHHHHHHHHhhh
Q 009622          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKVG  444 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~----------------------~~v~~~al~~l~~ll~~~  444 (530)
                      ++.|+|+|.|++.+.  +....+.+.|+++.|+.+|...+                      ..++..++.+|.++....
T Consensus       370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999999853  34478889999999999987533                      446667777777777543


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .            .+..+.+.|+++.|..+..+.+++++..|...+.++..
T Consensus       448 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          448 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             H------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             H------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            2            25667789999999999999999999999988777653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=5.2e-32  Score=290.78  Aligned_cols=402  Identities=17%  Similarity=0.166  Sum_probs=339.2

Q ss_pred             CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s~-~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.|++.|.++ ++.++..|+.+|+++...  ......+.+.|+++.|+++|.+++ +.++..|+++|.+++...+..
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            4688899999854 899999999999997654  445777888999999999999988 999999999999999977888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+...|+++.|+.++...........++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988888888889999999999999655566777789999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6544444556789999999999999999999999999998765321   1123688999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHhCcHHHHHHHHhcCc-hhH
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQAVIEANIIGPLVALLENAE-FDI  386 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v  386 (530)
                      |+.+.+.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++   ....+...++++.|+.++.+++ +.+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999888888889999999999999986323 48999999999999875433   2346778899999999999886 499


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------hHHHHHHHHHHHHHHhhh
Q 009622          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCLEGLENILKVG  444 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~----------------------~~v~~~al~~l~~ll~~~  444 (530)
                      +..|+|+|+|++.+  ++....+.+.|+++.|+.+|.+.+                      .+++..++.+|.++....
T Consensus       506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~  583 (780)
T 2z6g_A          506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI  583 (780)
T ss_dssp             HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence            99999999999984  455578889999999999986543                      346667777887776422


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      .            .+..+.+.|++..|..+..+.+++++..|...+..+.
T Consensus       584 ~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          584 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             H------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             h------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            1            3566788999999999999999999999988776653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=5.3e-30  Score=247.24  Aligned_cols=273  Identities=19%  Similarity=0.182  Sum_probs=237.6

Q ss_pred             CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC----------CCchhHHHHHHHHhhhhccCCCCCChhh
Q 009622          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (530)
Q Consensus       171 ~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~  240 (530)
                      +......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|..          ..++.+++.|+|+|.||+.+........
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3445677899999999998 5799999999999999999941          1357899999999999998864223222


Q ss_pred             --hhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHh-hCCCCchhHHHHHHHHhHhhcCC
Q 009622          241 --VSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       241 --~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~  316 (530)
                        ..|++|.|+.+|.+++++++..++|+|.+|+.. ++.....+.+.|+++.|+.+ +.+.+..++..|+.+|+||+.++
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence              457799999999999999999999999999985 55677788899999999997 46678899999999999999866


Q ss_pred             chhhHHHh-hcCchHHHHHhhcCCCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622          317 DMQTQCVI-EYQALPCLLNLLSGNYKK----SIKKEACWTVSNITA---GNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       317 ~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      +.....+. ..|+++.|+.+|.++ ++    .+++.|+|+|.|++.   ++++.++.+.+.|+++.|+.+|.+++..+++
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence            55555555 789999999999876 43    599999999999997   7889999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      +|+|+|.|++.. ++++...+++.|+++.|+++|.++++.++..++++|.+|+...+.
T Consensus       282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999975 678899999999999999999999999999999999999987554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.9e-30  Score=249.06  Aligned_cols=269  Identities=19%  Similarity=0.178  Sum_probs=234.6

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHhhhCCCchhhhhHh-h
Q 009622          132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWALGNIAGDSPRCRDLVL-S  199 (530)
Q Consensus       132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~nl~~~~~~~~~~i~-~  199 (530)
                      ..+..|+|+|.|++. ++++++.+++.|+++.|+.+|..           .++.++..|+|+|.||+.+.+..+..+. .
T Consensus        47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            455689999999999 58999999999999999999942           2467999999999999988876777765 4


Q ss_pred             cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC--CCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChH
Q 009622          200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       200 ~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                      .|++++|+.+| .+++.+++..++|+|.||+...  .........|++|.|+.+| .+.+.++++.++++|.+|+...++
T Consensus       126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence            56699999999 7889999999999999999852  2334445679999999975 567899999999999999986655


Q ss_pred             HHHHHH-HhCcHHHHHHhhCCCCc----hhHHHHHHHHhHhhc---CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHH
Q 009622          277 KIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (530)
Q Consensus       277 ~~~~~~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  348 (530)
                      ....+. ..|+++.|+.+|.+.+.    .++..|+++|.|++.   ++++.++.+.+.|+++.|+.+|.++ +..++++|
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A  283 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA  283 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence            445555 78999999999988654    489999999999997   6888888999999999999999998 99999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009622          349 CWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  403 (530)
Q Consensus       349 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~  403 (530)
                      +|+|+|++.+++++.+.+++.|++|.|++++.+++.++++.|+++|.|++.+...
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            9999999988899999999999999999999999999999999999999997543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=7.3e-27  Score=217.46  Aligned_cols=241  Identities=28%  Similarity=0.421  Sum_probs=223.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      |.++.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999988 99999999999999998888999999999999999999999999999999999999999888999


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .+.+.|+++.++.++ .+++..++..++|+|.+++... .........++++.|+.++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6788999999999999999654 33334445789999999999999999999999999999988


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88878899999999999999999999999999999999998888888899999999999999998 99999999999999


Q ss_pred             HhcCC
Q 009622          355 ITAGN  359 (530)
Q Consensus       355 l~~~~  359 (530)
                      ++...
T Consensus       239 l~~~~  243 (252)
T 4hxt_A          239 IKSGG  243 (252)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            98743

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=8.1e-27  Score=218.99  Aligned_cols=234  Identities=16%  Similarity=0.160  Sum_probs=200.9

Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh
Q 009622          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL  336 (530)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL  336 (530)
                      +-+..++..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.+|
T Consensus        55 e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           55 QEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            456778889999887654 5566788999999999 99999999999999999999999998888999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 009622          337 SGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK  416 (530)
Q Consensus       337 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~  416 (530)
                      .++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.+ +++.+..+++.|+++
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHH
Confidence            8643789999999999999999999888999999999999999999999999999999999987 568889999999999


Q ss_pred             HHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCC
Q 009622          417 PLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWL  495 (530)
Q Consensus       417 ~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~il~~~~~  495 (530)
                      .|+.+|.++++.++..++.+|.+|+...+..........+.+..++++     .++.++.++ +.++|++|..|+++||.
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999987554322111112345666664     477788776 89999999999999997


Q ss_pred             CCC
Q 009622          496 DDE  498 (530)
Q Consensus       496 ~~~  498 (530)
                      +.+
T Consensus       288 ~~~  290 (296)
T 1xqr_A          288 SPA  290 (296)
T ss_dssp             ---
T ss_pred             CCC
Confidence            644

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=1.4e-26  Score=215.44  Aligned_cols=241  Identities=27%  Similarity=0.415  Sum_probs=223.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009622          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (530)
Q Consensus       159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~  237 (530)
                      |.++.|+.+|.+++++++..|+++|++++...+..+..+.+.|+++.|++++ .+.+..++..++|+|.+++... ....
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            5689999999999999999999999999998888889999999999999999 7778999999999999999874 3334


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009622          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~  317 (530)
                      .....++++.|+.++.+++++++..++++|++++...+.....+.+.|+++.|++++.++++.++..++++|++++.+.+
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            44567899999999999999999999999999998878888889999999999999999999999999999999999888


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      .....+++.|+++.|+.++.++ ++.++..|+|+|++++.+++.....+.+.|+++.|++++.+++++++..|+++|.|+
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI  239 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            8878889999999999999988 999999999999999998899999999999999999999999999999999999999


Q ss_pred             hcCC
Q 009622          398 TSGG  401 (530)
Q Consensus       398 ~~~~  401 (530)
                      ....
T Consensus       240 ~~~~  243 (252)
T 4hxt_A          240 KSGG  243 (252)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            9754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=5.5e-27  Score=218.39  Aligned_cols=239  Identities=36%  Similarity=0.551  Sum_probs=220.4

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      ...+.++.+|.+++ ++++..|+++|.++...+.+.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45889999999998 89999999999887776778888899999999999999999999999999999999998888999


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      .+.+.|+++.|+.++ .++++.++..++|+|.+|+...+.. ......+++|.|+.++.++++.++..++|+|++++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6688999999999999999886544 45556789999999999999999999999999999988


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|..++.++ ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999988888888899999999999999998 99999999999999


Q ss_pred             Hhc
Q 009622          355 ITA  357 (530)
Q Consensus       355 l~~  357 (530)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.1e-26  Score=214.45  Aligned_cols=239  Identities=35%  Similarity=0.567  Sum_probs=217.7

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.+++.|++++++++..|++.|+++++.. .+....+++.|+++.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            46899999999999999999999999988873 677888899999999999999988 9999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+.....+.+.|+++.|++++ .+.+..++..++|+|++|+..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988775448888999999999999 777899999999999999987


Q ss_pred             CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      .+. .......+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            532 2233457899999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             hhc
Q 009622          312 IVT  314 (530)
Q Consensus       312 l~~  314 (530)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.5e-24  Score=218.46  Aligned_cols=322  Identities=10%  Similarity=0.112  Sum_probs=255.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--  150 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~--  150 (530)
                      ..+.+.+.+.+++.+.+..|++.|..+...  ....+.+. +.|+++.|+++++...+..+.+.++.+|.|++...+.  
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence            456677777777777789999999987543  33344444 4677999999999633378999999999999984431  


Q ss_pred             ------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009622          151 ------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       151 ------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~  194 (530)
                                                          .+..+.+.|++|.|+.+++++++.+++.++|+|.||+.+ +.+|
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R  491 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI  491 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence                                                345667899999999999999999999999999999977 5689


Q ss_pred             hhHhhcCChHHHHHhhcCCCch--hHHHHHHHHhhhhccCCC-CCCh--hhhhchHHHHHHhhcC-CCh-----------
Q 009622          195 DLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGKP-QPPF--DQVSPALPALAHLIHS-NDD-----------  257 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~--~~~~~a~~~L~~L~~~~~-~~~~--~~~~~~l~~L~~ll~~-~d~-----------  257 (530)
                      ..+++.|++++|+.++......  ..+..|+++|.+++.... ...+  ....+++|.|+.+|.. ++.           
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9999999999999999544332  378999999999985431 1110  0114899999999983 221           


Q ss_pred             --hHHHHHHHHHHHhccCC----hHHHHHHHHh-CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcC---
Q 009622          258 --EVLTDACWALSYLSDGT----NDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---  327 (530)
Q Consensus       258 --~v~~~a~~~l~~l~~~~----~~~~~~~~~~-~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~---  327 (530)
                        --...++.+|.||+..+    ++....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.+   
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              12678999999999886    2334557774 8999999999999999999999999999984443222343222   


Q ss_pred             ---chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHh-CcHHHHHHHHhc--CchhHHHHHHHHHHHhhc
Q 009622          328 ---ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA-NIIGPLVALLEN--AEFDIKKEAAWAISNATS  399 (530)
Q Consensus       328 ---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~  399 (530)
                         -++.|+.++..+ +.++|+.|+|+|+|++.+++...+.+++. ++++.++.++.+  ++.+++..++.++.||+.
T Consensus       652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence               378899999988 99999999999999988888888888876 799999999999  799999999999999996

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.7e-22  Score=207.50  Aligned_cols=399  Identities=14%  Similarity=0.104  Sum_probs=299.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      ..+.+.+.+.+........++..+.+.++.  ....+..+..+.++.|.+++++   ..++..|+-+|+.+.........
T Consensus       256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~  330 (778)
T 3opb_A          256 LSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCI  330 (778)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTC
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcC
Confidence            355666666554444444566666666677  4555666677788999999864   47889999999998874322111


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~-~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      .+.  ...+.+.+.|.+++..-+..|++.|+.++.+.. .|..+. +.+++..|++++....+..+...++.+|.|++..
T Consensus       331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~  407 (778)
T 3opb_A          331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL  407 (778)
T ss_dssp             CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred             cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence            111  245777888877776679999999999987765 555554 5567999999995457888999999999999986


Q ss_pred             CCCCCh---------------------------------------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009622          233 KPQPPF---------------------------------------DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       233 ~~~~~~---------------------------------------~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (530)
                      .+....                                       ....|++|.|+.++.+.++.++..++|+|.+++..
T Consensus       408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d  487 (778)
T 3opb_A          408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS  487 (778)
T ss_dssp             CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred             CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            642100                                       12268899999999999999999999999999866


Q ss_pred             ChHHHHHHHHhCcHHHHHHhhCCCCch---hHHHHHHHHhHhhcCCchhhHHHhh----cCchHHHHHhhcC-CCch---
Q 009622          274 TNDKIQAVIEAGVFPRLAEFLMHPSPS---VLIPALRTVGNIVTGDDMQTQCVIE----YQALPCLLNLLSG-NYKK---  342 (530)
Q Consensus       274 ~~~~~~~~~~~~~i~~L~~lL~~~~~~---~~~~a~~~L~nl~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~---  342 (530)
                       .+.+..+++.|+++.|+.++.+....   .+..|+.+|++++...+...  ++.    .|+++.|+.+|.. +...   
T Consensus       488 -~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~  564 (778)
T 3opb_A          488 -KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNP  564 (778)
T ss_dssp             -GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred             -HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccccc
Confidence             55667788999999999999987644   79999999999985443221  121    3899999999983 2111   


Q ss_pred             ---------hHHHHHHHHHHHHhcCC----HHHHHHHHHh-CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-H
Q 009622          343 ---------SIKKEACWTVSNITAGN----REQIQAVIEA-NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI-K  407 (530)
Q Consensus       343 ---------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~  407 (530)
                               .-+.+|+.+|.|++..+    .+..+.++.. |+++.|..++.+++..+|+.|+++++|++..  ++.+ .
T Consensus       565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~  642 (778)
T 3opb_A          565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAA  642 (778)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGG
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHH
Confidence                     12789999999999975    3446777884 9999999999999999999999999999984  3432 2


Q ss_pred             HHHHc------CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC--CC
Q 009622          408 FLVIQ------GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH--DN  479 (530)
Q Consensus       408 ~l~~~------~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~  479 (530)
                      .+...      +.++.|+.+++.+|.+++..|.++|.++....+..          ...+++..+|++.+..+...  ++
T Consensus       643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i----------a~~ll~~~~gi~~Ll~lL~~~~~~  712 (778)
T 3opb_A          643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI----------AKELLTKKELIENAIQVFADQIDD  712 (778)
T ss_dssp             GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH----------HHHHTTCHHHHHHHHHHHHHTTTC
T ss_pred             HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH----------HHHHHHccccHHHHHHHHhccCCC
Confidence            33221      23789999999999999999999999996544432          24555556899999988766  99


Q ss_pred             HHHHHHHHHHHHHhCC
Q 009622          480 AEIYEKSVKLLETYWL  495 (530)
Q Consensus       480 ~~v~~~a~~il~~~~~  495 (530)
                      ++++.++..++...++
T Consensus       713 ~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          713 IELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999886

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=8.5e-23  Score=184.35  Aligned_cols=199  Identities=38%  Similarity=0.567  Sum_probs=185.9

Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh
Q 009622          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (530)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~  320 (530)
                      ..+..+.|..++.+++++++..++|+|.+++..+++....+++.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            35678899999999999999999999999998888888889999999999999999999999999999999999888888


Q ss_pred             HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      ..+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++.....+++.|+++.|++++.+++++++..|+++|.|++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            8999999999999999999 999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622          401 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       401 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll  441 (530)
                       +++....+.+.|+++.|+.++.++++.++..++++|.++.
T Consensus       169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence             4677888899999999999999999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=2.1e-22  Score=181.75  Aligned_cols=199  Identities=34%  Similarity=0.533  Sum_probs=181.4

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh
Q 009622          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (530)
Q Consensus       114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~  193 (530)
                      ..|..+.|+.+|.+++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            3678999999999988 999999999999999888999999999999999999999999999999999999999888888


Q ss_pred             hhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009622          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       194 ~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                      +..+.+.|+++.|+.++ .+.+..++..++|+|++++...+.. ......+++|.|+.++.++++.++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999 7789999999999999999865322 234457899999999999999999999999999999


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       273 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~  314 (530)
                      ..+.....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            878888889999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=8.3e-22  Score=184.91  Aligned_cols=226  Identities=14%  Similarity=0.101  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009622          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l  209 (530)
                      .+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678899999999998 6678888899999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHHHhhhhccCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009622          210 LNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (530)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  288 (530)
                      +..+++..+++.|+|+|++++++.+.. ......+++|.|+.+|.+++..++..++|+|++++...++.+..+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            965568899999999999999876432 2334468999999999999999999999999999988888889999999999


Q ss_pred             HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh--cCc---hHHHHHhhcCCC-chhHHHHHHHHHHHHhc
Q 009622          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQA---LPCLLNLLSGNY-KKSIKKEACWTVSNITA  357 (530)
Q Consensus       289 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~~---l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~  357 (530)
                      .|+.+|.+++..++..|+++|++|+.+.+......-.  ..+   +..-.+-++... ..++.+.|..++.++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999875433222211  112   212223333221 24556666666666654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.85  E-value=1.2e-20  Score=169.14  Aligned_cols=197  Identities=19%  Similarity=0.141  Sum_probs=170.8

Q ss_pred             CHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009622          117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~  194 (530)
                      .+|.++++|.+++ +  .++..|+++|.+++..+++.+..+++.|+||.|+++|+++++++++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999988 6  899999999999998889999999999999999999999999999999999999999888899


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc----------------CCChh
Q 009622          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE  258 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~  258 (530)
                      ..+.+.|++++|+++|..+.+.++++.++.+|++|+....... ....+.+|.|+.++.                ..+.+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            9999999999999999546789999999999999998754333 334567888887653                13678


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCCC------CchhHHHHHHHHhHhhcC
Q 009622          259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHP------SPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~------~~~~~~~a~~~L~nl~~~  315 (530)
                      ++.++.++|.|++..+++..+.+.+. |+++.|+.+++..      +...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998877777778765 7789999998752      567899999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=4.3e-20  Score=165.53  Aligned_cols=197  Identities=16%  Similarity=0.183  Sum_probs=166.5

Q ss_pred             CCHHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622           73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      ..++.++++|.++++  +++..|+..+++++... .+....+++.|++|.|+++|.+++ +++|..|+|+|.||+.++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            378999999999998  89999999999987653 556778889999999999999988 99999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---------------CCC
Q 009622          151 HTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------------GQP  214 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---------------~~~  214 (530)
                      ++..+++.|+||.|+++|. +.+.+++++++.+|+||+.... .+..+.+ +++++|+.++.               ...
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence            9999999999999999997 5789999999999999997654 6667666 46999988762               113


Q ss_pred             chhHHHHHHHHhhhhccCC-CCCChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccC
Q 009622          215 KLSMLRNATWTLSNFCRGK-PQPPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       215 ~~~~~~~a~~~L~~L~~~~-~~~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~l~~l~~~  273 (530)
                      +..++.++.++|.||+... ..+.... ..|+++.|+.+++.      .+...+++++.+|.||+..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6799999999999999865 3333333 35788999999874      2667899999999999864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.79  E-value=2.3e-17  Score=172.80  Aligned_cols=343  Identities=11%  Similarity=0.126  Sum_probs=247.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhh
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRD  195 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~  195 (530)
                      ++|.+..++.+++ ..+|..|+.+|+.++.....   ......+++.++.++.++++.++..++++|+.++...+. .+.
T Consensus       243 ~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  318 (588)
T 1b3u_A          243 VMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence            5666666666555 66777777777776652111   112235678888889888899999999999998854331 111


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                      ......+++.+..++ .+.+..++..++++|..++..-..  ......++|.+..++.+.+++++..++.+++.+.....
T Consensus       319 ~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  395 (588)
T 1b3u_A          319 NVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence            112234667777777 788899999999999999864211  12235678899999998899999999998888764322


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       276 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                      ..   .....+++.+..++.+.+|.++..++.+++.++......   .....+++.+..++.+. +..+|..|+.+++.+
T Consensus       396 ~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l  468 (588)
T 1b3u_A          396 IR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKL  468 (588)
T ss_dssp             HH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH
Confidence            11   122357788889999999999999999999987532211   12234688899999888 899999999999999


Q ss_pred             hcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009622          356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE  435 (530)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~  435 (530)
                      +......   .....++|.|..++.++++.+|..++++++.++.....+    .....+++.|..+++++++.++..+++
T Consensus       469 ~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~  541 (588)
T 1b3u_A          469 VEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAK  541 (588)
T ss_dssp             HHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHH
Confidence            8632111   123468888988888889999999999999998742221    133468899999999999999999999


Q ss_pred             HHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          436 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       436 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ++..+.......          +.    ....+..|..+..+.+++|+..|...+..+-
T Consensus       542 ~l~~l~~~~~~~----------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          542 SLQKIGPILDNS----------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHGGGSCHH----------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhchh----------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            999998653211          11    1234567777889999999999999988653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.78  E-value=5.4e-18  Score=185.31  Aligned_cols=355  Identities=13%  Similarity=0.131  Sum_probs=260.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        75 l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      -+.+++.+.++++.++..++.++..++.......+     .++++.|++.+.+++ +.++..++.+|+.++...+.....
T Consensus        92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~  165 (852)
T 4fdd_A           92 KSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS  165 (852)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence            35666778888899999999999999876422222     457999999999887 899999999999999744332211


Q ss_pred             HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622          155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       155 ~~----~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      -.    -..+++.+++++.++++.+|..|+++|++++...+..-.. .-.++++.++..+ .+++..++..++++|..++
T Consensus       166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~  243 (852)
T 4fdd_A          166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALVMLL  243 (852)
T ss_dssp             CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence            00    0235677888888899999999999999988654421111 0123667777777 7788999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhh-----------CC
Q 009622          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE---AGVFPRLAEFL-----------MH  296 (530)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~i~~L~~lL-----------~~  296 (530)
                      ...+..-......+++.+..++.+.++.++..+++.+..++.....  ...+.   ..+++.++..+           .+
T Consensus       244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d  321 (852)
T 4fdd_A          244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD  321 (852)
T ss_dssp             HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred             HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence            8654322233467888888999989999999999999998865421  11121   13456666665           23


Q ss_pred             -----------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009622          297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQA  365 (530)
Q Consensus       297 -----------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (530)
                                 .++.++..|..+++.++...+..   ++ ..+++.+...+.++ ++.+|..|++++++++.+..+....
T Consensus       322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~  396 (852)
T 4fdd_A          322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP  396 (852)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence                       34678999999999998644322   11 24678888888888 9999999999999999987765543


Q ss_pred             HHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009622          366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       366 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~  445 (530)
                      .+ .++++.++..+.++++.||..|+|++++++....... ..-.-.++++.|+..+.++++.++..++++|.+++....
T Consensus       397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC  474 (852)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC-TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred             HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            33 4688999999999999999999999999986321100 000122467888888888899999999999999987654


Q ss_pred             h
Q 009622          446 A  446 (530)
Q Consensus       446 ~  446 (530)
                      .
T Consensus       475 ~  475 (852)
T 4fdd_A          475 T  475 (852)
T ss_dssp             G
T ss_pred             H
Confidence            3

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.76  E-value=8e-17  Score=168.68  Aligned_cols=381  Identities=12%  Similarity=0.093  Sum_probs=284.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.+...+.++++.++..|+..+..++...  +.  ......++|.+..++++++ +.++..|+.+|+.++...+..  
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence            3455566677888999999999999887653  21  1223567899999998887 899999999999988743321  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                       .....++|.+..++.++++.+|..++.+|+.++.....   ......+++.++.++ .++++.++..+++++..++...
T Consensus       238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence             12234688888999889999999999999999753211   112334678888888 7788999999999999999865


Q ss_pred             CCCCh--hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          234 PQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       234 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      +....  .....++|.+..++.+.++.++..++++++.++..-...   .....+++.+..++.+.++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~  389 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            33211  345778899999999999999999999999887432211   1223578889999999999999999999998


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      ++......   .....++|.+..++.+. +..+|..++.+++.++.. ..+    .....+++.+..++.+++..||..|
T Consensus       390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a  461 (588)
T 1b3u_A          390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            87643221   12245788888988887 899999999999998752 111    1122467888888998899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009622          391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK  470 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (530)
                      +.++..++....++.    ....+++.|..++.+++..++..+++++..+.......         .+.     ...+..
T Consensus       462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~---------~~~-----~~~~~~  523 (588)
T 1b3u_A          462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---------ITT-----KHMLPT  523 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH---------HHH-----HHTHHH
T ss_pred             HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH---------HHH-----HHHHHH
Confidence            999999987433332    23457888888888899999999999999988654321         012     234577


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          471 IESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       471 l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      |..+..+++++|+..+...+..++.
T Consensus       524 l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          524 VLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHhhCCCCCchHHHHHHHHHHHHHH
Confidence            7777888999999999988888764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.75  E-value=5.3e-17  Score=177.47  Aligned_cols=392  Identities=14%  Similarity=0.111  Sum_probs=277.4

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009622           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (530)
Q Consensus        77 ~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  156 (530)
                      .++..+.+.++.+|..|+..|++.+... -..+..-....+-+.+++.|.+++ +.+|..++.+++.++......    .
T Consensus        52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~  125 (852)
T 4fdd_A           52 FVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----N  125 (852)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----T
T ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----c
Confidence            3444445678899999999999988642 111111122345566777788777 899999999999998743110    0


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh----hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL----SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~----~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      -.+.++.|+..+.++++.+++.++.+|+.++.+.+.....-.    -..+++.+++.+ .+++..++..+++++..+...
T Consensus       126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~  204 (852)
T 4fdd_A          126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIIS  204 (852)
T ss_dssp             CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTT
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhc
Confidence            135789999999999999999999999999865443211000    122566677777 678899999999999988865


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                      .+.........+++.+..++.+++++++..++++|..++...++.....+. ++++.+...+.+.++.++..|+.++..+
T Consensus       205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTL  283 (852)
T ss_dssp             TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence            432222234578888999998999999999999999998766654433333 5788888889999999999999999998


Q ss_pred             hcCCchhhHHHhh---cCchHHHHHhhc-----------C--C--------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009622          313 VTGDDMQTQCVIE---YQALPCLLNLLS-----------G--N--------YKKSIKKEACWTVSNITAGNREQIQAVIE  368 (530)
Q Consensus       313 ~~~~~~~~~~~~~---~~~l~~L~~lL~-----------~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  368 (530)
                      +.... .. ..+.   ..+++.++..+.           +  +        .+..+|+.|+.+|..++...++.   ++ 
T Consensus       284 ~~~~~-~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-  357 (852)
T 4fdd_A          284 AEQPI-CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-  357 (852)
T ss_dssp             TTSTT-HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-
T ss_pred             hcchh-HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-
Confidence            86432 11 1221   245667776662           2  0        13457999999999998633221   11 


Q ss_pred             hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhh
Q 009622          369 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK  448 (530)
Q Consensus       369 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~  448 (530)
                      ..+++.+...+.++++.+|..|+++|++++.+.. +.... .-.++++.+..+++++++.++..+++++.++........
T Consensus       358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~  435 (852)
T 4fdd_A          358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP  435 (852)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence            2367888888888899999999999999998754 33222 224578899999999999999999999999987643311


Q ss_pred             hcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          449 NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                            ...+.     .+.+..|.....++++.++..|...+..+..
T Consensus       436 ------~~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          436 ------PDTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             ------TTTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence                  11122     2345666666777899999999998887653

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.74  E-value=2.9e-16  Score=163.72  Aligned_cols=333  Identities=16%  Similarity=0.159  Sum_probs=226.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.+.+.+.++++.++..|+..+.++..   .....     .+++.+.+++.+++ +.+|..|++++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            45556666777788888777777776531   12222     24677899999887 99999999999999986665432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                         +.++++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|++.+ .+.++..+..++.++..++...
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence               246789999999999999999999999999987764311111223466677777 4556777777888887776432


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~  310 (530)
                          ......+++.+..++++.++.|+..+++++.++...   +++..+.+. ..+.+.|+.++ ++++.++..|+.+++
T Consensus       234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNIN  307 (591)
T ss_dssp             ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHH
Confidence                234467888899999999999999999999998742   233334333 25567777665 478899999999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009622          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      .++...+.....     .+..+. .+.++ +..+|..|++++.+++...  ++.     .+++.|...+.+.+.+++..+
T Consensus       308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~  373 (591)
T 2vgl_B          308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA  373 (591)
T ss_dssp             HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence            998755433211     111111 11233 4677888888888776532  121     245566677777777888888


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009622          391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~  445 (530)
                      +++|++++... +....     .+++.|++++......++..++.++..++...+
T Consensus       374 v~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p  422 (591)
T 2vgl_B          374 VRAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP  422 (591)
T ss_dssp             HHHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence            88888877753 22222     246777777777777777666667777665443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=1.7e-14  Score=144.56  Aligned_cols=415  Identities=13%  Similarity=0.139  Sum_probs=292.8

Q ss_pred             CCHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCCHHH
Q 009622           73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEVI-RSGVVPRFVEFLLREDYPQL  133 (530)
Q Consensus        73 ~~l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~~-~~g~v~~Lv~ll~~~~~~~i  133 (530)
                      .+++.++..|+.  +|.++...++..|.++.+....+                ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            378999999986  57888888999998888764321                112333 4577999999999888 899


Q ss_pred             HHHHHHHHHHHhcCChh-hHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc
Q 009622          134 QFEAAWALTNIASGTSE-HTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (530)
Q Consensus       134 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~  211 (530)
                      +..++.+|..++...++ ..+.+.. .++++.|+.+|+++.+.+|..++.+|.+|+.+++..++.+.-.|+++.|++++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999997776 5666664 499999999999999999999999999999999999999988899999999995


Q ss_pred             CCC---chhHHHHHHHHhhhhccCCC-CCChhhhhchHHHHHHhhcCCChh------HHHH---HHHHHHHhccCC----
Q 009622          212 GQP---KLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDDE------VLTD---ACWALSYLSDGT----  274 (530)
Q Consensus       212 ~~~---~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~------v~~~---a~~~l~~l~~~~----  274 (530)
                      ...   ...+...++.++.+|.+..+ +.......+++|.|.+++..+++.      ...+   ++.++.-+...+    
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            322   34678899999999999874 334445578899999998754321      3333   444555554431    


Q ss_pred             --hHHHHHHHHhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCchhhHHHhhcC---------chHHHHHhhcCCCc
Q 009622          275 --NDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---------ALPCLLNLLSGNYK  341 (530)
Q Consensus       275 --~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~  341 (530)
                        ..+...+.+.|+++.|++++...  ...++..|+.+++.+..+++.....+....         ++..|+.++.+.+.
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence              23456778899999999998875  567899999999999999987766665422         44445555665546


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHh----------Cc---HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009622          342 KSIKKEACWTVSNITAGNREQIQAVIEA----------NI---IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF  408 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  408 (530)
                      ..+|.+|+.++..+..++++....++..          +.   -..++.-+-+.|+.--.-|+.++.++... +++..+.
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~  457 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ  457 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence            8899999999999999887654444422          10   12344555556765556688888888885 4444444


Q ss_pred             HHH--------c---CChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009622          409 LVI--------Q---GCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT  476 (530)
Q Consensus       409 l~~--------~---~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  476 (530)
                      +..        .   -.++.+..+|. ..++.+....+..|...+-.++.          .+...+.+...++.|.....
T Consensus       458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~----------AV~dFL~~~s~l~~L~~~i~  527 (651)
T 3grl_A          458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI----------AVTHFLHNSANVPFLTGQIA  527 (651)
T ss_dssp             HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH----------HHHHHHHSTTHHHHHHHHHH
T ss_pred             HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH----------HHHHHHcCCchHHHHHHHHH
Confidence            333        0   11445555554 34565555555555555544433          35667777767888776543


Q ss_pred             C--C--CHHHHHHHHHHHHHhCCCCCC
Q 009622          477 H--D--NAEIYEKSVKLLETYWLDDED  499 (530)
Q Consensus       477 ~--~--~~~v~~~a~~il~~~~~~~~~  499 (530)
                      +  .  +.-|+=.+.-++--+|....+
T Consensus       528 ~~~~~~~~lvqGL~a~LLGi~yef~~~  554 (651)
T 3grl_A          528 ENLGEEEQLVQGLCALLLGISIYFNDN  554 (651)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred             hccCcchHHHHHHHHHHHHHHhhccCC
Confidence            2  2  233677777777665554443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.70  E-value=1.3e-15  Score=143.53  Aligned_cols=258  Identities=14%  Similarity=0.133  Sum_probs=202.7

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch
Q 009622          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       113 ~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~  192 (530)
                      ...+.++.|+..|.+++ +.++..|+++|+++..  +         +.++.|+.++.++++.++..++++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            34568999999999887 9999999999999873  2         3478899999999999999999999998643321


Q ss_pred             hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 009622          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (530)
Q Consensus       193 ~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~  272 (530)
                      ..      ..++.+.+.+..+++..++..++++|..+....+    .....+++.|..++.++++.++..++++|+.+..
T Consensus        88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            11      1233333333367889999999999999975431    1235678999999999999999999999998753


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009622          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       273 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                                 .+.++.|+.++.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       2578999999999999999999999999853222         3578899999988 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHH
Q 009622          353 SNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVT  431 (530)
Q Consensus       353 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~  431 (530)
                      +++..           ...++.|+..+.+++  ++..|+++|..+...            .+++.|..++.. ++++++.
T Consensus       217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~------------~~~~~L~~~l~~~~~~~~~~  271 (280)
T 1oyz_A          217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK------------TLLPVLDTMLYKFDDNEIIT  271 (280)
T ss_dssp             HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG------------GGHHHHHHHHTTSSCCHHHH
T ss_pred             HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch------------hhhHHHHHHHhcCCCcHHHH
Confidence            99852           257889999998654  999999999998541            467888888864 5677777


Q ss_pred             HHHHHHH
Q 009622          432 VCLEGLE  438 (530)
Q Consensus       432 ~al~~l~  438 (530)
                      .++..+.
T Consensus       272 ~~~~~l~  278 (280)
T 1oyz_A          272 SAIDKLK  278 (280)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7777664

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.70  E-value=2.1e-14  Score=143.85  Aligned_cols=410  Identities=16%  Similarity=0.144  Sum_probs=288.6

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCChh
Q 009622           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~-~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      +.++.|..-+.+ .-.+.+..|+..|+.+...-  +  . .+-+++++.|+..|+.+ ++.++...++.+|.++.....+
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y--~--~-~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY--R--L-EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT--T--T-HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh--H--H-HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            578999998885 45789999999999885432  1  2 23345699999999865 3588888999999988774432


Q ss_pred             -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch-hhhhHhh-cCChHHHHHhh
Q 009622          151 -----------------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLS-QGGLVPLLAQL  210 (530)
Q Consensus       151 -----------------~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~-~~~i~~Ll~ll  210 (530)
                                       ..+.++ +.+.++.|+.+|++.+..++..++.+|..|+...+. .++.+.. .++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             223343 467899999999999999999999999999988776 6777774 48999999999


Q ss_pred             cCCCchhHHHHHHHHhhhhccCCCCCC-hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009622          211 NGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (530)
Q Consensus       211 ~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~ll~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  285 (530)
                       .+..+.++..++..|.+|+.+.+... .....++++.|+.++....    ..+..+++.++.+|...+..+...+.+.+
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             77788999999999999999875444 3445799999999998654    47899999999999999988888899999


Q ss_pred             cHHHHHHhhCCCCch------hHHH---HHHHHhHhhcCCc------hhhHHHhhcCchHHHHHhhcCCC-chhHHHHHH
Q 009622          286 VFPRLAEFLMHPSPS------VLIP---ALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC  349 (530)
Q Consensus       286 ~i~~L~~lL~~~~~~------~~~~---a~~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~  349 (530)
                      .++.|..++..++..      ....   ++.++.-++....      .....+.+.|+++.|+.++..+. ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999999754321      2222   5566666665422      33456778999999999988653 567999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC---------cHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc----C--
Q 009622          350 WTVSNITAGNREQIQAVIEAN---------IIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ----G--  413 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~--  413 (530)
                      .+++.+..+++..-..+.+..         ++..|+.++.+. ...+|..|+.++..+..+. .+....+...    .  
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~  413 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTID  413 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCC
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCcccc
Confidence            999999999988777776532         344444445444 5889999999999999874 3332333322    0  


Q ss_pred             ----Ch---HHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcC------CCCchhhHHHhhhhccHHHHHH-HhcCCC
Q 009622          414 ----CI---KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG------NTDVNVFTQMIDDAEGLEKIES-LQTHDN  479 (530)
Q Consensus       414 ----~l---~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~-l~~~~~  479 (530)
                          .+   ..|..-+-+.|+--.-.+.-++..++...+..+...      .+..++...      .++.+.. |....+
T Consensus       414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vt------liq~~~~~L~~~~~  487 (651)
T 3grl_A          414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVS------LLQQCTNILSQGSK  487 (651)
T ss_dssp             CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCB------HHHHHHHHTTTTCC
T ss_pred             cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCccc------HHHHHHHHHhcCCc
Confidence                01   123344445566443446667777776665433210      000010111      1333333 344566


Q ss_pred             HHHHHHHHHHHHHhCC
Q 009622          480 AEIYEKSVKLLETYWL  495 (530)
Q Consensus       480 ~~v~~~a~~il~~~~~  495 (530)
                      +.+.--...++-.|.-
T Consensus       488 ~ri~vgyL~LL~~WL~  503 (651)
T 3grl_A          488 IQTRVGLLMLLCTWLS  503 (651)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            7777666777665543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.69  E-value=4.8e-15  Score=154.55  Aligned_cols=332  Identities=15%  Similarity=0.123  Sum_probs=246.9

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.+++.+.+++..++..+...+..++...  +...    .-+++.+.+-+.+++ +.++..|+.+|+++..  ++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~e~~----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--PDMA----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--HHHH----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--chHH----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence            36788999999999999988888888776531  2111    124677888888887 9999999999999863  5544


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..+     ++.+.+++.++++.+|..|++++.+++...++   .+...++++.+..++ .+.++.++..|+++|..++..
T Consensus       120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            443     57899999999999999999999999876554   223346788899998 788999999999999999987


Q ss_pred             CCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          233 KPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       233 ~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      .+.. ........++.|+..+...++..+..++.+++.++...+...     ..+++.+..++++.++.++..|++++..
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6533 233345667778887878899999999999988875544332     2567888889999999999999999999


Q ss_pred             hhcC---CchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHH
Q 009622          312 IVTG---DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKK  388 (530)
Q Consensus       312 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (530)
                      +...   +++..+.+ -..+.+.|+.++. + ++.+|..|+.+|+.++...++....     .+..+. .+.+++..+|.
T Consensus       266 l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~  336 (591)
T 2vgl_B          266 FLELLPKDSDYYNML-LKKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKL  336 (591)
T ss_dssp             SCCSCCBTTBSHHHH-HHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHH
T ss_pred             HhhccCCCHHHHHHH-HHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHH
Confidence            8753   23333322 2355677776664 6 8999999999999998754432211     111121 12234589999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      .|++.|.+++...+.+        .+++.|..++.+.|.+++..+++++..+....
T Consensus       337 ~al~~L~~l~~~~nv~--------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          337 EKLDIMIRLASQANIA--------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             HHHHHHHHTCCSSTHH--------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCChhhHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence            9999999998764422        24667778888889999999999888887544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.67  E-value=8.2e-15  Score=138.07  Aligned_cols=254  Identities=14%  Similarity=0.086  Sum_probs=200.1

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      ..++.++..|.++++.++..|++.|.++..            .+.++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence            478999999999999999999999998742            235888999999888 9999999999999875222 11


Q ss_pred             HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..     +++.|. .++.++++.++..++++|+++....+...     ..+++.|+..+ .++++.++..++++|.++..
T Consensus        89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            11     234444 24567889999999999999974433221     23577888888 78899999999999998764


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                                ...+|.|..++.++++.++..++++|+.+....+         .+++.|..++.++++.++..|+++|+.
T Consensus       158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                      2478999999999999999999999999854333         346778889999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHH
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEA  390 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a  390 (530)
                      +..           ...++.|...+.++ +  +|..|+++|+.+..           ..+++.|..++.+. ++++...+
T Consensus       219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence            862           35688899999865 3  89999999999853           14788999998654 67888888


Q ss_pred             HHHHH
Q 009622          391 AWAIS  395 (530)
Q Consensus       391 ~~aL~  395 (530)
                      ..+|.
T Consensus       274 ~~~l~  278 (280)
T 1oyz_A          274 IDKLK  278 (280)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            77764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.67  E-value=1.8e-14  Score=150.63  Aligned_cols=336  Identities=17%  Similarity=0.130  Sum_probs=205.2

Q ss_pred             hcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhhcc------ccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChH
Q 009622           15 KYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG------LQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSG   88 (530)
Q Consensus        15 ~~k~~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~   88 (530)
                      ..++..+.+|.+++-.....+||+.-++....+|+...      .-.+..         .   -.....+++.+.+++..
T Consensus        18 ~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d---------~---~~~~~~vik~~~s~~~~   85 (618)
T 1w63_A           18 TIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYP---------A---HFGQLECLKLIASQKFT   85 (618)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCC---------C---GGGHHHHHHHHHSSSHH
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCC---------C---cchHHHHHHHHcCCchH
Confidence            33444555666666666677888776543222222100      011110         0   13667888999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh
Q 009622           89 VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL  168 (530)
Q Consensus        89 ~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL  168 (530)
                      .+..+.-.+..++..  .+..-.+    ++..|.+-|.+++ +.++..|+++|+++..  ++...     .+++.+.++|
T Consensus        86 ~Krl~Yl~~~~~~~~--~~e~~~l----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L  151 (618)
T 1w63_A           86 DKRIGYLGAMLLLDE--RQDVHLL----MTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLL  151 (618)
T ss_dssp             HHHHHHHHHHHHCCC--CHHHHHH----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC--CcHHHHH----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHH
Confidence            888888888888654  2222111    4677888888888 8999999999999985  44333     3468899999


Q ss_pred             CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHH
Q 009622          169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL  248 (530)
Q Consensus       169 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L  248 (530)
                      .++++.+|..|+.+++++....|+..     .++++.+..++ .+.++.++..|+++|..++...+.. ......++|.+
T Consensus       152 ~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l  224 (618)
T 1w63_A          152 KTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQL  224 (618)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHH
Confidence            99999999999999999987666432     24677778888 7889999999999999998764321 22345667777


Q ss_pred             HHhhcC---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCCchhHHHHHH
Q 009622          249 AHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALR  307 (530)
Q Consensus       249 ~~ll~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~~~~~a~~  307 (530)
                      +.+|..               .++..+..++.+++.++..++....     .+++.|..++.      +.+..+...|++
T Consensus       225 ~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~  299 (618)
T 1w63_A          225 VRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVL  299 (618)
T ss_dssp             HHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            766542               4788888888888888766543211     22333333321      122345555555


Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      ++..+.. .+.    +. ..+++.|..++.++ ++.+|..|..+|+.++...+..+.     ...+.++.++.+++..+|
T Consensus       300 ~i~~l~~-~~~----l~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~d~~Ir  367 (618)
T 1w63_A          300 TIMDIKS-ESG----LR-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDLDVSIK  367 (618)
T ss_dssp             HHHHSCC-CHH----HH-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSSCHHHH
T ss_pred             HHHhcCC-CHH----HH-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCCChhHH
Confidence            5555432 111    11 12344555555554 555555555555555544333211     233444555555555555


Q ss_pred             HHHHHHHHHhhcC
Q 009622          388 KEAAWAISNATSG  400 (530)
Q Consensus       388 ~~a~~aL~nl~~~  400 (530)
                      ..|+.+|..++..
T Consensus       368 ~~alelL~~l~~~  380 (618)
T 1w63_A          368 RRAMELSFALVNG  380 (618)
T ss_dssp             HHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHccc
Confidence            5555555555543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.63  E-value=2.6e-14  Score=156.58  Aligned_cols=355  Identities=14%  Similarity=0.186  Sum_probs=245.0

Q ss_pred             CHHHHHHhhcC-------CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009622           74 NLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (530)
Q Consensus        74 ~l~~l~~~l~s-------~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~  146 (530)
                      .++.++..+..       +++.++..|..+|..++...+.....     .+++.+.+.+.+.+ ...+..|+++++.++.
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~-----~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE-----PVLEFVEQNITADN-WRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence            45666666664       23578888989988887543212122     35677777888777 8999999999999998


Q ss_pred             CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009622          147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (530)
Q Consensus       147 ~~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a  222 (530)
                      +.. +.....+. .+++.|+..+.++++.++..++|+|+.++......   ...  -..+++.++..+ .+. +.++..+
T Consensus       399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a  473 (861)
T 2bpt_A          399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNC  473 (861)
T ss_dssp             SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHH
Confidence            643 33333332 47888999999999999999999999998542210   011  123577778887 444 8899999


Q ss_pred             HHHhhhhccCCC----CCChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009622          223 TWTLSNFCRGKP----QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (530)
Q Consensus       223 ~~~L~~L~~~~~----~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  296 (530)
                      +|++.+++....    ..-......+++.|..++.+.+  +.++..++.+++.++..........+. .+++.++..+..
T Consensus       474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~  552 (861)
T 2bpt_A          474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ  552 (861)
T ss_dssp             HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence            999999987532    1122345677888888888544  788999999999988654433332332 355556665542


Q ss_pred             C---------------CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCch-hHHHHHHHHHHHHhcCCH
Q 009622          297 P---------------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNR  360 (530)
Q Consensus       297 ~---------------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~  360 (530)
                      .               ...++..++.++++++...+...... -..+++.+...+.+. +. .++..++++++.++....
T Consensus       553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~  630 (861)
T 2bpt_A          553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG  630 (861)
T ss_dssp             HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred             HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence            1               34567789999999987554432211 235778888888877 66 899999999999986433


Q ss_pred             HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC--hHHHHHHHHHHH
Q 009622          361 EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD--PRIVTVCLEGLE  438 (530)
Q Consensus       361 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~al~~l~  438 (530)
                      ......+. .++|.|+..+.+.++.++..++.++..++.........++  ..+++.+...+.+.+  +.++..++.++.
T Consensus       631 ~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~  707 (861)
T 2bpt_A          631 KGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG  707 (861)
T ss_dssp             GGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred             hhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence            32322232 3888999999888889999999999998875433222222  345777777777654  789999999999


Q ss_pred             HHHhhhh
Q 009622          439 NILKVGE  445 (530)
Q Consensus       439 ~ll~~~~  445 (530)
                      .++....
T Consensus       708 ~l~~~~~  714 (861)
T 2bpt_A          708 DIASNIG  714 (861)
T ss_dssp             HHHHHHG
T ss_pred             HHHHHhh
Confidence            9987643

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.62  E-value=7.3e-14  Score=153.03  Aligned_cols=399  Identities=10%  Similarity=0.109  Sum_probs=264.1

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH--H
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT--K  153 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~--~  153 (530)
                      +.+.+.+.+.++..+..|+.++..++...........+ ..+++.++..+.+++ +.++..++|+|+.++.......  .
T Consensus       372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~  449 (861)
T 2bpt_A          372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQ  449 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            34444566888999999999999998543112222222 347889999998887 9999999999999986321100  0


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-----chhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhh
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-----PRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLS  227 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-----~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~  227 (530)
                      .. -..+++.++..+.++ +.++..++|+|.+++...     ......+  ..+++.++..+.. +.+..++..++.++.
T Consensus       450 ~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          450 QH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            00 013468888888765 899999999999997532     1122222  2356777777742 334789999999999


Q ss_pred             hhccCCCCCChhhhhchHHHHHHhhcCC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009622          228 NFCRGKPQPPFDQVSPALPALAHLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (530)
Q Consensus       228 ~L~~~~~~~~~~~~~~~l~~L~~ll~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~  292 (530)
                      .++...+.........++|.++..+...               ...++..++.++..++............ .+++.++.
T Consensus       526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~  604 (861)
T 2bpt_A          526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred             HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence            9988765433344566777777766521               3456778888998887544332221222 56777888


Q ss_pred             hhCCCCc-hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCc
Q 009622          293 FLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANI  371 (530)
Q Consensus       293 lL~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  371 (530)
                      .+.+.+. .++..++.+++.++..........+ ..+++.+...+.+. ++.++..++++++.++..........+ ..+
T Consensus       605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l  681 (861)
T 2bpt_A          605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred             HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence            8888777 8999999999999865443332222 34788999999776 888999999999999874333333333 357


Q ss_pred             HHHHHHHHhcCc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC-----------hHHHHHHHHHHH
Q 009622          372 IGPLVALLENAE--FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-----------PRIVTVCLEGLE  438 (530)
Q Consensus       372 i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-----------~~v~~~al~~l~  438 (530)
                      ++.++..+.+++  +.+|..++.+++.++.........++  ..+++.+...+....           ..++..+++++.
T Consensus       682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~  759 (861)
T 2bpt_A          682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            888888888764  88999999999999875433333333  235777777776431           347788888888


Q ss_pred             HHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC----CHHHHHHHHHHHHHhCC
Q 009622          439 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD----NAEIYEKSVKLLETYWL  495 (530)
Q Consensus       439 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~v~~~a~~il~~~~~  495 (530)
                      .++.......       ..+...+.  ..++.|.....+.    +.+++..|...+..+..
T Consensus       760 ~i~~~l~~~~-------~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          760 GIVAGLHDKP-------EALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHTTTCH-------HHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCH-------HHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            8875432100       01122111  1244555544432    88999999998887643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.60  E-value=9.7e-14  Score=152.35  Aligned_cols=400  Identities=16%  Similarity=0.153  Sum_probs=247.9

Q ss_pred             CHHHHHHhhc-------CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009622           74 NLPVMVAGVW-------SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (530)
Q Consensus        74 ~l~~l~~~l~-------s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~  146 (530)
                      .++.+++.+.       ++++..+..|+.++..++...+...    + ..+++.+...+.+++ +.++..|+++|+.++.
T Consensus       322 ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~----~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i~~  395 (876)
T 1qgr_A          322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI----V-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILE  395 (876)
T ss_dssp             HHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG----H-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred             HhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh----H-HHHHHHHHHHccCCC-hHHHHHHHHHHHHHHc
Confidence            3566666665       2356788888888888775432111    1 235777778888777 8999999999999998


Q ss_pred             CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh---hhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009622          147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (530)
Q Consensus       147 ~~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~---~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a  222 (530)
                      +.. +...... ..+++.++..+.++++.++..|+|+|++++...+..   ...  -..+++.++..+ .+. +.++..+
T Consensus       396 ~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~~l-~~~-~~v~~~a  470 (876)
T 1qgr_A          396 GPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIEGL-SAE-PRVASNV  470 (876)
T ss_dssp             SSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHHHT-TSC-HHHHHHH
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHHHH-cCC-HHHHHHH
Confidence            654 3333322 357899999999999999999999999998654321   111  123567777777 443 7889999


Q ss_pred             HHHhhhhccCCC--------------CCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHh---------------
Q 009622          223 TWTLSNFCRGKP--------------QPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYL---------------  270 (530)
Q Consensus       223 ~~~L~~L~~~~~--------------~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l---------------  270 (530)
                      +|++.+++....              ..-......++|.|..++...   +..++..++.+++.+               
T Consensus       471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l  550 (876)
T 1qgr_A          471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT  550 (876)
T ss_dssp             HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence            999999986421              111223456777777776543   223444444443333               


Q ss_pred             -----------------------------------------ccCCh-HHHHHHHHhCcHHHHHHhhCCCC--chhHHHHH
Q 009622          271 -----------------------------------------SDGTN-DKIQAVIEAGVFPRLAEFLMHPS--PSVLIPAL  306 (530)
Q Consensus       271 -----------------------------------------~~~~~-~~~~~~~~~~~i~~L~~lL~~~~--~~~~~~a~  306 (530)
                                                               +.... ....... ..+++.++.++.+..  +.++..++
T Consensus       551 ~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~  629 (876)
T 1qgr_A          551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDAL  629 (876)
T ss_dssp             HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-HHHHHHHHHHC-----CCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHHH
Confidence                                                     32221 1111111 135667777777664  47899999


Q ss_pred             HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc--Cch
Q 009622          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLEN--AEF  384 (530)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~  384 (530)
                      .+++.++..........+. .+++.+...+.+..++.+|..|+++++.++......+...+ ..+++.++..+.+  .+.
T Consensus       630 ~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~  707 (876)
T 1qgr_A          630 MAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHR  707 (876)
T ss_dssp             HHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCG
T ss_pred             HHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccH
Confidence            9999998643322222222 36788888887643678999999999999863223333333 3578888888887  357


Q ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC-----------hHHHHHHHHHHHHHHhhhhhhh-hcC-
Q 009622          385 DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD-----------PRIVTVCLEGLENILKVGEAEK-NLG-  451 (530)
Q Consensus       385 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-----------~~v~~~al~~l~~ll~~~~~~~-~~~-  451 (530)
                      +++..+++++++++.....+...++  ..+++.|...+....           ..++..++.++..++....... ... 
T Consensus       708 ~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~  785 (876)
T 1qgr_A          708 SVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP  785 (876)
T ss_dssp             GGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred             HhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence            8999999999999863222222222  235566666665432           2677888888888876532210 000 


Q ss_pred             -CCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Q 009622          452 -NTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYW  494 (530)
Q Consensus       452 -~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~a~~il~~~~  494 (530)
                       .....+|...+     +..+..+..++  ++.++..|...+..+.
T Consensus       786 ~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~  826 (876)
T 1qgr_A          786 DVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC  826 (876)
T ss_dssp             GGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence             00112222222     34444444555  7889998888887654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.59  E-value=7.3e-14  Score=141.52  Aligned_cols=390  Identities=11%  Similarity=0.084  Sum_probs=269.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      .+..++..+.++|..++..|-..|.++....         ..+.+..|+.++.+++ ++.+|..|+..|.++........
T Consensus         2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~   72 (462)
T 1ibr_B            2 ELITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI   72 (462)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHH
Confidence            3567788888999999999999998864310         1345677888887653 48999999999999976431111


Q ss_pred             HH-----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC--chhHH
Q 009622          153 KV-----------VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSML  219 (530)
Q Consensus       153 ~~-----------~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~--~~~~~  219 (530)
                      ..           -....+-..|+..+.++++.+ ..++.+++.++.......   .-.+.++.|+..+ .+.  +..++
T Consensus        73 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r  147 (462)
T 1ibr_B           73 KAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMK  147 (462)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred             HHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHH
Confidence            00           001123356777888877778 889999999975421100   1235788888888 455  88999


Q ss_pred             HHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhC
Q 009622          220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLM  295 (530)
Q Consensus       220 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~lL~  295 (530)
                      ..++.+|..++... +.........+++.+..++.+.  ++.++..++++++++...-.+... .....-+++.+...+.
T Consensus       148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  227 (462)
T 1ibr_B          148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ  227 (462)
T ss_dssp             HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence            99999999999753 2222334466888899999887  789999999999987644322111 0111124666777788


Q ss_pred             CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--------------
Q 009622          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--------------  361 (530)
Q Consensus       296 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--------------  361 (530)
                      +.++.++..++++++.++...+......+..++++.++..+.+. ++.++..|++.+..++.....              
T Consensus       228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  306 (462)
T 1ibr_B          228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP  306 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence            88899999999999999876554322222226788888888887 899999999999998753210              


Q ss_pred             -------HHHHHHHhCcHHHHHHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh
Q 009622          362 -------QIQAVIEANIIGPLVALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP  427 (530)
Q Consensus       362 -------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~  427 (530)
                             .....+ ..++|.++..+..       .++.+|..|+.+|..++........     ..+++.+...+.+.+.
T Consensus       307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~  380 (462)
T 1ibr_B          307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDW  380 (462)
T ss_dssp             SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSH
T ss_pred             ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCCh
Confidence                   011111 3467777777743       2467999999999999875432221     2457778888899999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          428 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       428 ~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .++..++.++..+.......         .+...+  ...+..|..+..++++.|+..|...+.++..
T Consensus       381 ~~r~aal~~l~~l~~~~~~~---------~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          381 RYRDAAVMAFGCILEGPEPS---------QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHHHTSSSSCTT---------TTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHH---------HHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999988633211         011112  3457788888899999999999999998865

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.58  E-value=1.9e-14  Score=145.92  Aligned_cols=362  Identities=14%  Similarity=0.094  Sum_probs=244.8

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCc----------HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHH
Q 009622           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPP----------IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWAL  141 (530)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~----------~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L  141 (530)
                      .+..++..+.++  ++.++..|+..|++++.....+.          +..-....+-..|+..+.+++ +.+ ..++.++
T Consensus        36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i  113 (462)
T 1ibr_B           36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV  113 (462)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence            345566666653  67899999999999985421000          000012234556778888777 677 8899999


Q ss_pred             HHHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCC-chh
Q 009622          142 TNIASGTSEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP-KLS  217 (530)
Q Consensus       142 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~-~~~  217 (530)
                      +.++.......   .-.++++.|+..+.++  ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.... +..
T Consensus       114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~  189 (462)
T 1ibr_B          114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN  189 (462)
T ss_dssp             HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence            99987321100   0136789999999887  8999999999999998643 22111111 236677778884332 789


Q ss_pred             HHHHHHHHhhhhccCCC-C-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009622          218 MLRNATWTLSNFCRGKP-Q-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~-~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~  295 (530)
                      ++..+++++.++..... . ........+++.+...+.+.+++++..+++++..++..........+..++++.++..+.
T Consensus       190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (462)
T 1ibr_B          190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (462)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999998764321 0 111111235777777778889999999999999988654432221222266777778888


Q ss_pred             CCCchhHHHHHHHHhHhhcCCch-----------------hhHHHh---hcCchHHHHHhhcCC------CchhHHHHHH
Q 009622          296 HPSPSVLIPALRTVGNIVTGDDM-----------------QTQCVI---EYQALPCLLNLLSGN------YKKSIKKEAC  349 (530)
Q Consensus       296 ~~~~~~~~~a~~~L~nl~~~~~~-----------------~~~~~~---~~~~l~~L~~lL~~~------~~~~v~~~a~  349 (530)
                      +.++.++..++..++.++.....                 ....++   -..++|.++..+...      .+..+|..|+
T Consensus       270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~  349 (462)
T 1ibr_B          270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  349 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHH
Confidence            88999999999999888753200                 000011   134567777777432      1457999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHH
Q 009622          350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI  429 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v  429 (530)
                      .+|..++...++   .++ ..+++.+...+.+.++.+|..|+.+|+.++.+..++.....+ ..+++.++.++.++++.+
T Consensus       350 ~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~V  424 (462)
T 1ibr_B          350 VCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVV  424 (462)
T ss_dssp             HHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHH
Confidence            999999874332   122 246778888888889999999999999999865422211111 457889999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 009622          430 VTVCLEGLENILKVGEA  446 (530)
Q Consensus       430 ~~~al~~l~~ll~~~~~  446 (530)
                      +..++++|.++......
T Consensus       425 r~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          425 RDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999999976543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.58  E-value=2.6e-13  Score=148.99  Aligned_cols=276  Identities=19%  Similarity=0.213  Sum_probs=194.0

Q ss_pred             HHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcH-HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        75 l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~-~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      ++.++..+.++  ++.++..|+.++..++...+ ... .......+++.+.+.+.+++ +.++..++.+|..++...+..
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK-ANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH-HHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            34455566665  68899999999998875421 111 01111235777788777766 899999999999999866555


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch------------------hhhhH--hhcCChHHHHHhhc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR------------------CRDLV--LSQGGLVPLLAQLN  211 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~------------------~~~~i--~~~~~i~~Ll~ll~  211 (530)
                      ....+...+++.++..+.+.++.++..+++++..++.....                  .....  .-...++.++..+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~  331 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence            44444447788888888888899999999999888743110                  00000  00234666677763


Q ss_pred             C------CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHh
Q 009622          212 G------QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEA  284 (530)
Q Consensus       212 ~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~  284 (530)
                      .      +.+..++..+..++..++...+   ......+++.+...+.+.+..++..++++++.++.... +...... .
T Consensus       332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~  407 (876)
T 1qgr_A          332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I  407 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence            2      2346788899999988887543   13356677888888888899999999999999997654 3333333 3


Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhh-HHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009622          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (530)
Q Consensus       285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  358 (530)
                      .+++.++..+.++++.++..|++++++++...+... ..-.-..+++.++..+.+  ++.++..|+|++++++..
T Consensus       408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999997544321 001113567788888865  478999999999999853

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.57  E-value=4e-13  Score=140.53  Aligned_cols=369  Identities=14%  Similarity=0.105  Sum_probs=237.7

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..+.+.++++++.++..|++++.++..    +   .+. ..+++.+..++.+++ +.+|..|+.++.++...+++...
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence            56778888889999999999999998852    1   122 346888999999988 99999999999999987666442


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC--------------CCchhHH
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML  219 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~--------------~~~~~~~  219 (530)
                           ++++.+..+|.+.++.++..|+++|+.++...+.....+  ...++.++++|..              ..++-.+
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence                 678888899999999999999999999987765422222  2356666655531              2355566


Q ss_pred             HHHHHHhhhhccCCCCCC--------------------------------------hhhhhchHHHHHHhhcCCChhHHH
Q 009622          220 RNATWTLSNFCRGKPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLT  261 (530)
Q Consensus       220 ~~a~~~L~~L~~~~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~  261 (530)
                      ..++.+|..++...+...                                      ......+++.|..++.+.++.++.
T Consensus       252 ~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~  331 (618)
T 1w63_A          252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRY  331 (618)
T ss_dssp             HHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHH
Confidence            666666666665431100                                      001112445566666666777777


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCc
Q 009622          262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK  341 (530)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  341 (530)
                      .++.+|..++...+.    .+. .....++.++.+++..++..|+.++..++....  ..     .+++.|...+.+. +
T Consensus       332 ~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~-----~iv~eL~~~l~~~-d  398 (618)
T 1w63_A          332 VALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IR-----GMMKELLYFLDSC-E  398 (618)
T ss_dssp             HHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--TH-----HHHHHHHHHHHHC-C
T ss_pred             HHHHHHHHHHhhCHH----HHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HH-----HHHHHHHHHHHhC-C
Confidence            777777766643322    121 345567777777777788888888877775332  11     2356777777777 8


Q ss_pred             hhHHHHHHHHHHHHhcCC---HH-HHHHHH----H------------------------hCcHHHHHHHHhcC--chhHH
Q 009622          342 KSIKKEACWTVSNITAGN---RE-QIQAVI----E------------------------ANIIGPLVALLENA--EFDIK  387 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~---~~-~~~~l~----~------------------------~~~i~~L~~ll~~~--~~~v~  387 (530)
                      .++|..++.+++.++...   .. .+..++    .                        ..++..|++.+.+.  ...+.
T Consensus       399 ~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~  478 (618)
T 1w63_A          399 PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV  478 (618)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH
Confidence            899999999999998732   11 111111    0                        11344455555532  23344


Q ss_pred             HHHHHHHHHhhcCC-------------CHHHHHHHHHcCChHHHHhccC--CCChHHHHHHHHHHHHHHhhhhhhhhcCC
Q 009622          388 KEAAWAISNATSGG-------------THEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGN  452 (530)
Q Consensus       388 ~~a~~aL~nl~~~~-------------~~~~~~~l~~~~~l~~L~~lL~--~~~~~v~~~al~~l~~ll~~~~~~~~~~~  452 (530)
                      ..++|+|+..+...             .+.        .+++.|..+++  ..++.++..++.++.++....+..     
T Consensus       479 ~~~~wilGEy~~~i~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~-----  545 (618)
T 1w63_A          479 QVAAWCIGEYGDLLVSGQCEEEEPIQVTED--------EVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT-----  545 (618)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSSCCCCCCHH--------HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC-----
T ss_pred             HHHHHHHhhhHHHhcccccccccccCCCHH--------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch-----
Confidence            45777777665310             111        12444545553  467889999999998887654321     


Q ss_pred             CCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          453 TDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                            ...+     ...|.....+.|.+|+++|...+.-+..
T Consensus       546 ------~~~l-----~~~L~~~~~~~d~evrdRA~~y~~ll~~  577 (618)
T 1w63_A          546 ------VNRI-----KKVVSIYGSSIDVELQQRAVEYNALFKK  577 (618)
T ss_dssp             ------HHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             ------HHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence                  1112     2345666789999999999987765443

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.53  E-value=1.5e-12  Score=147.99  Aligned_cols=405  Identities=12%  Similarity=0.116  Sum_probs=270.6

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.++..+.+.|++++..|...|.+.+.... .....-....+++.+++.+.+.+ +.+|..|+.+|+.++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~-~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccc-cCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            46889999999999999999999998875431 11110111246888999998777 999999999999999754431  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh-----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR-----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~-----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      .+  ..+++.|+..+.++++.+|..++.+|+.++.......     ..-....+++.|+..+.++.+..++..++.++..
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            11  1356888888888888999999999999985433210     0111234788888888435788999999999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-chhHHHHHH
Q 009622          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALR  307 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~~~~a~~  307 (530)
                      ++...+..-......+++.+...+.++++.++..++.+++.++......   ++ ..+++.++..|.+.+ +.++..++.
T Consensus       161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence            9864332222345778888999999889999999999999998765432   12 256777877776543 467888999


Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh-------
Q 009622          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE-------  380 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-------  380 (530)
                      +++.++...+..... .-..+++.++..+.+. ++.+|..+++++..++...+..+...+ ..+++.++..+.       
T Consensus       237 ~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~  313 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNY  313 (1230)
T ss_dssp             HHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCC
Confidence            999998754432211 1246899999999887 899999999999999874332221111 123444433331       


Q ss_pred             ------------------------------cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHH
Q 009622          381 ------------------------------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV  430 (530)
Q Consensus       381 ------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~  430 (530)
                                                    +..+++|..|+.++..++.... +....+ -..+++.+...+.+.++.++
T Consensus       314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~-~~~l~~~l~~~l~d~~~~Vr  391 (1230)
T 1u6g_C          314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVK  391 (1230)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHH
T ss_pred             cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHH-HHHHHHHHHHHcCCCchHHH
Confidence                                          0124689999999999987433 212222 24578888888988899999


Q ss_pred             HHHHHHHHHHHhhhhhhhhcCC--------CCc-hhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          431 TVCLEGLENILKVGEAEKNLGN--------TDV-NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ..++.++..++...........        .+. ..+...+  ...++.+.....++++.++..+...+..+..
T Consensus       392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            9999999888764311000000        000 0011111  1234555566777888888777777776543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.45  E-value=6.6e-12  Score=112.65  Aligned_cols=188  Identities=22%  Similarity=0.212  Sum_probs=158.1

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCC
Q 009622          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP  237 (530)
Q Consensus       158 ~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~  237 (530)
                      .+.++.|+..|.++++.++..+++.|+.+..           .+.++.|+.++ .+++..++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            3568999999999999999999999998742           24688899999 67899999999999998863      


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009622          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~  317 (530)
                          ...++.|..++.++++.++..++++|+.+..           .+.++.|+.++.++++.++..|+++|+.+..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                4578999999999999999999999998853           2467889999999999999999999999853   


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                              ...++.|..++.++ ++.+|..|+++|+.+..  +         ..++.|..++.++++.||..|..+|.++
T Consensus       142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                    24678899999888 99999999999999943  2         3677888999999999999999999998


Q ss_pred             hcCC
Q 009622          398 TSGG  401 (530)
Q Consensus       398 ~~~~  401 (530)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8754

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.44  E-value=1.7e-11  Score=109.03  Aligned_cols=185  Identities=23%  Similarity=0.226  Sum_probs=157.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCCh
Q 009622          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (530)
Q Consensus       159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~  238 (530)
                      +..+.++..|.++++.++..++++|+.+..           .+.++.|+.++ .+++..++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            456889999999999999999999998742           23688899999 78899999999999998853       


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009622          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~  318 (530)
                         ...++.|..++.++++.++..++++|+.+..           ...++.|..++.++++.++..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               3578999999999999999999999998753           1467888999999999999999999999853    


Q ss_pred             hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009622          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  398 (530)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  398 (530)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .+         ..++.|..++.++++.||..|..+|.++.
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   34688899999988 9999999999999993  22         26778888999999999999999999875


Q ss_pred             c
Q 009622          399 S  399 (530)
Q Consensus       399 ~  399 (530)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.44  E-value=6.8e-12  Score=142.53  Aligned_cols=397  Identities=12%  Similarity=0.125  Sum_probs=258.5

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCc----HHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCC
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~----~~~~~~~g~v~~Lv~ll~~-~~~~~i~~~a~~~L~~l~~~~  148 (530)
                      .++.++..+.++++.++..|+.++..++..-....    ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            46777778888888899999999998876542220    1111224579999999984 55 899999999999998522


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhh
Q 009622          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (530)
Q Consensus       149 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~  228 (530)
                      +....... ..+++.|+..+.++++.++..++.+|+.++...+.   .+ -...++.++..+....+...+..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            11110000 23467778888888899999999999999865442   11 223577788877544445677778888888


Q ss_pred             hccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC------------
Q 009622          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------  296 (530)
Q Consensus       229 L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~------------  296 (530)
                      ++...+..-......++|.+...+...+++++..+++++..++..........+ ..+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            887543322234578899999999988999999999999888765332222122 1344444444421            


Q ss_pred             -------------------------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009622          297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (530)
Q Consensus       297 -------------------------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (530)
                                               ..|.++..|+.+++.++...+......+ ..+++.+...+.+. ++.+|..++.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     1356788999999999875443222233 46788888888777 88999999998


Q ss_pred             HHHHhcC--C-----------------HHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009622          352 VSNITAG--N-----------------REQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       352 L~nl~~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      +..++..  .                 .......+ ..+++.+...+.+.++.+|..++.+|..++.........+  -.
T Consensus       398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~--l~  474 (1230)
T 1u6g_C          398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH--IP  474 (1230)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG--HH
T ss_pred             HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHH--HH
Confidence            8877641  1                 11111222 2467777777988899999999999999887532111111  12


Q ss_pred             CChHHHHhccCCCCh--HHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009622          413 GCIKPLCDLLVCPDP--RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL  490 (530)
Q Consensus       413 ~~l~~L~~lL~~~~~--~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il  490 (530)
                      .+++.+...|.+..+  .++..++..+..++......         .+...+.  ..+..|.....+.+..+...|...+
T Consensus       475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~---------~~~~~l~--~llp~L~~~l~d~~~~v~~~al~~l  543 (1230)
T 1u6g_C          475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ---------VFHPHVQ--ALVPPVVACVGDPFYKITSEALLVT  543 (1230)
T ss_dssp             HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG---------GGHHHHT--TTHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH---------HHHhHHH--HHHHHHHHHHcccchHHHHHHHHHH
Confidence            457788888887654  78888888888887532111         1222222  2355565556667777766665555


Q ss_pred             HHh
Q 009622          491 ETY  493 (530)
Q Consensus       491 ~~~  493 (530)
                      ..+
T Consensus       544 ~~l  546 (1230)
T 1u6g_C          544 QQL  546 (1230)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.43  E-value=8.8e-12  Score=111.83  Aligned_cols=188  Identities=22%  Similarity=0.186  Sum_probs=157.9

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009622          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~  194 (530)
                      .+.++.|+.+|.+++ +.++..|+++|+.+..           .+.++.|+.++.++++.++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457899999999887 9999999999998764           2568899999999999999999999999842      


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                           .+.++.|+.++ .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23678888998 78899999999999998854          3578999999999999999999999999843  


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                               ...++.|..++.++++.++..++.+|+.+..           ..+++.|..++.++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     1467889999999999999999999999853           23577888999888 99999999999999


Q ss_pred             HhcCC
Q 009622          355 ITAGN  359 (530)
Q Consensus       355 l~~~~  359 (530)
                      +....
T Consensus       201 ~~~~~  205 (211)
T 3ltm_A          201 HKSFN  205 (211)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            97643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.41  E-value=1.4e-10  Score=120.90  Aligned_cols=370  Identities=12%  Similarity=0.092  Sum_probs=251.3

Q ss_pred             CCCchHHhhhhhhHHHHHHHHhhh----HHHHhhhhcc-----ccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCChHH
Q 009622           19 AVDADEGRRRREDNMVEIRKNKRE----ESLQKKRREG-----LQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGV   89 (530)
Q Consensus        19 ~~~~~~~~~~r~~~~~~lRk~~~~----~~l~~~R~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~s~~~~~   89 (530)
                      ..+.++.+++=.....++|++-+.    ..-.+++...     .-.+..  .          -.....+++.+.+++...
T Consensus        23 ~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d--~----------s~~~~~vvkl~~s~~~~~   90 (621)
T 2vgl_A           23 CKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD--I----------DFGHMEAVNLLSSNRYTE   90 (621)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC--C----------CSCHHHHHHGGGCSCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC--C----------chhHHHHHHHhcCCCHHH
Confidence            445567776666777788877662    1222222110     011110  0          147789999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh-
Q 009622           90 QYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL-  168 (530)
Q Consensus        90 ~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-  168 (530)
                      +..+.-.+..++..  .+..-.+    ++..+.+=+.+++ +.++..|+++|+++..  ++....     +++.+.+++ 
T Consensus        91 Krl~YL~l~~~~~~--~~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~~-----l~~~v~~~l~  156 (621)
T 2vgl_A           91 KQIGYLFISVLVNS--NSELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAEA-----FAGEIPKILV  156 (621)
T ss_dssp             HHHHHHHHHHSCCC--CHHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHHH-----HTTHHHHHHH
T ss_pred             HHHHHHHHHHHccC--CcHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHHH-----HHHHHHHHHh
Confidence            99998888887654  2221111    3566777778888 9999999999999965  554443     468899999 


Q ss_pred             -CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHH
Q 009622          169 -YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (530)
Q Consensus       169 -~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~  247 (530)
                       .+.++.+|..|+.++.++....|+.   +...+.++.+.++| .+.++.++.+|+.++..++...+.    .....+|.
T Consensus       157 ~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~----~~~~~~~~  228 (621)
T 2vgl_A          157 AGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPE----EFKTSVSL  228 (621)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHH----HHTTHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChH----HHHHHHHH
Confidence             8899999999999999998755532   22247888999999 788999999999999999876532    22334444


Q ss_pred             HH----HhhcCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhh---------CCCCc-
Q 009622          248 LA----HLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFL---------MHPSP-  299 (530)
Q Consensus       248 L~----~ll~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL---------~~~~~-  299 (530)
                      ++    .++...             ++..+..++..+..++... ++....+.  +++..++..+         .+.+. 
T Consensus       229 ~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~  306 (621)
T 2vgl_A          229 AVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAK  306 (621)
T ss_dssp             HHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchH
Confidence            44    443221             6788999999998887643 33333222  2344444332         12222 


Q ss_pred             -hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH
Q 009622          300 -SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL  378 (530)
Q Consensus       300 -~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l  378 (530)
                       .+...|+.++..+.. .+...     ..++..|..++.++ ++.+|..|+..|..++...+. . ..+ ......++..
T Consensus       307 ~aVl~ea~~~i~~l~~-~~~~~-----~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~~-~~~~~~i~~~  376 (621)
T 2vgl_A          307 NAVLFEAISLIIHHDS-EPNLL-----VRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EAV-KTHIETVINA  376 (621)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHH-----HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HHH-HTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-cHHHH-----HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HHH-HHHHHHHHHH
Confidence             677888888888752 22211     23567788888877 999999999999999876432 1 122 2467788888


Q ss_pred             Hh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622          379 LE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       379 l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~  442 (530)
                      +. ++|..++..++..|..++..   ...+.     ++..|...+...|.+++..++.++..+..
T Consensus       377 L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          377 LKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             hccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            88 88999999999999999863   33333     45566666666777777777777776653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.41  E-value=1.9e-11  Score=108.75  Aligned_cols=184  Identities=22%  Similarity=0.190  Sum_probs=157.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +..+.++++|.+++ +.++..|+++|+.+..           .+.++.|+.+|.++++.++..++++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            45788999999998 9999999999998764           2467899999999999999999999999842       


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                          ...++.|+..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..   
T Consensus        75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                13678888988 78899999999999998854          3578899999999999999999999999853   


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009622          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       276 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (530)
                              ...++.|..++.++++.++..|+++|+.+..           ...++.|..++.++ ++.+|..|.++|.++
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    2567889999999999999999999999842           23577888899888 999999999999987


Q ss_pred             h
Q 009622          356 T  356 (530)
Q Consensus       356 ~  356 (530)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.28  E-value=4.6e-10  Score=116.98  Aligned_cols=330  Identities=12%  Similarity=0.109  Sum_probs=222.0

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL--LREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll--~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      .+..+.+.++++++.++-.|++++.++..    +.   +. ..+++.+.+++  .+.+ +.+|..|+.++..+...+++.
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e---~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS----RE---MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH---HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH---HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence            45677778889999999999999998842    21   22 23578888998  7777 999999999999999866654


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHH----hhcC--C----------Cc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA----QLNG--Q----------PK  215 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~----ll~~--~----------~~  215 (530)
                      ..   ..+.++.+..+|.+.++.++..|+.+|..++...+..-     ...++.++.    ++..  .          ++
T Consensus       183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence            32   24789999999999999999999999999987665311     113333333    3311  1          15


Q ss_pred             hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh---------cCCC--hhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009622          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA  284 (530)
Q Consensus       216 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll---------~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~  284 (530)
                      +-.+...+..+..++.............+++.++..+         .+.+  ..+...++.++..+.. .++...     
T Consensus       255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----
T ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----
Confidence            6788888888888875321111111222333333222         1122  3788888888888863 222222     


Q ss_pred             CcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCCHHHH
Q 009622          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQI  363 (530)
Q Consensus       285 ~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (530)
                      .++..|..++.+.++.++..++.++..++...+.. . .+ ......++..|. ++ +..+|..+..+|..++.  +.++
T Consensus       329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv  402 (621)
T 2vgl_A          329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA  402 (621)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence            35677888898899999999999999998765421 1 22 345778888888 77 89999999999999974  3444


Q ss_pred             HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                      ..     ++..|...+...+.+++..++.+++.++..-.+.. .     -++..|++++......+...+...+..++..
T Consensus       403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~-----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~  471 (621)
T 2vgl_A          403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-T-----WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN  471 (621)
T ss_dssp             HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-H-----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred             HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence            33     55678888888899999999999999875211111 1     1356666666544333444444455555543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.14  E-value=5e-09  Score=86.25  Aligned_cols=218  Identities=15%  Similarity=0.162  Sum_probs=177.0

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCC
Q 009622          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP  236 (530)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  236 (530)
                      +..++..++.+|.++-+.++.+|+..+.+++...|+....     .+..|+.++.++....+......+++.++...|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            3456788999999988999999999999999888875544     456777787788888888888899999987653  


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC
Q 009622          237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       237 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~  316 (530)
                        ....+++|.+..-..-.|+.++.+...+|..++...+....     +++.-+..++.+.+..-+..|+..++.+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              46678889888888888999999999999999988776544     56677899999988888888898888887655


Q ss_pred             chhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHH
Q 009622          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN  396 (530)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n  396 (530)
                      ....     ...+|.|..+|.+. +.-||..|.-+|.+++..++..+. +     +..-++-+++.+..|+..+..+|+.
T Consensus       176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRk-i-----i~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRK-V-----VIKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHH-H-----HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHH-H-----HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            4433     35799999999999 999999999999999998887433 2     2334455677788899999999998


Q ss_pred             hhcC
Q 009622          397 ATSG  400 (530)
Q Consensus       397 l~~~  400 (530)
                      ++.-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.09  E-value=1.8e-08  Score=106.28  Aligned_cols=273  Identities=14%  Similarity=0.140  Sum_probs=192.5

Q ss_pred             CHHHHHHhhc---CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 009622           74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN  143 (530)
Q Consensus        74 ~l~~l~~~l~---s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-------~~~i~~~a~~~L~~  143 (530)
                      .+..+-+.|.   ++++.++.-|+..|.-+-++...    .     ++..|...|.+++       .+.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4555555666   56788888999999877655321    1     3666777776543       36789999999999


Q ss_pred             HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHH
Q 009622          144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (530)
Q Consensus       144 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~  223 (530)
                      +..++...       .+++.|..++.+++..+++.++.+|+.+-.+... .      .++..|+..+..+.+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHH
Confidence            87655321       1356788888777777788999999987433321 1      14566677665566788999999


Q ss_pred             HHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-hCCCCc
Q 009622          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSP  299 (530)
Q Consensus       224 ~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~  299 (530)
                      .+|..+..+.        ...++.++..|. +.++.++..++.+++.  ...++...         ++.|+.. ..+.+.
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence            9999887664        234566666665 4678888887777654  33344333         3333333 345677


Q ss_pred             hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH
Q 009622          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL  379 (530)
Q Consensus       300 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  379 (530)
                      .++..|+.+||.++.+.++.         ++.++.+|.+..++.+|..|+++|+.++.+++..       .++..|..+.
T Consensus       593 ~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~  656 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence            89999999999998877632         4556665544449999999999999999876531       3667888888


Q ss_pred             hcCchhHHHHHHHHHHHhhcCCC
Q 009622          380 ENAEFDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       380 ~~~~~~v~~~a~~aL~nl~~~~~  402 (530)
                      .+.+..|++.|+.+|+.+..+.+
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCc
Confidence            88999999999999999987654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.07  E-value=3.4e-09  Score=111.89  Aligned_cols=217  Identities=16%  Similarity=0.122  Sum_probs=156.4

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCC-Cc
Q 009622          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGD-SP  191 (530)
Q Consensus       114 ~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nl~~~-~~  191 (530)
                      +..++| +++.|++++ +..|..|+++|++|+. ++..+..+...|++..++ .+|.+++.+++..|+++|.||+.+ .+
T Consensus        33 ~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           33 EDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             hhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            345555 556789888 8999999999999997 788888888888887765 568889999999999999999954 56


Q ss_pred             hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 009622          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (530)
Q Consensus       192 ~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~  271 (530)
                      ..+..+...|++++|..++.         .....+..+......... .....+           .++...++.+|.+++
T Consensus       110 d~~~~l~~~~il~~L~~~l~---------~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~  168 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAAK---------AVLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLA  168 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHHH---------HHHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcChHHHHHHHHH---------hhHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHH
Confidence            77888899999999999983         122222222211100000 001111           124456677788888


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHhhcCCchhhHHHhhcCchH---HHHHhhcCCCchhHH
Q 009622          272 DGTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP---CLLNLLSGNYKKSIK  345 (530)
Q Consensus       272 ~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~---~L~~lL~~~~~~~v~  345 (530)
                      ..+++....+...+.++.|+..|.+.   ...++..|+.+|..++..++...+.+.+.+...   .+..+..+  ....+
T Consensus       169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~  246 (684)
T 4gmo_A          169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRA  246 (684)
T ss_dssp             HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTH
T ss_pred             hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHH
Confidence            77777777788888999999988543   357999999999999999988888887766433   33333333  34457


Q ss_pred             HHHHHHHHHHh
Q 009622          346 KEACWTVSNIT  356 (530)
Q Consensus       346 ~~a~~~L~nl~  356 (530)
                      ..+|++|.|+.
T Consensus       247 ~la~giL~Ni~  257 (684)
T 4gmo_A          247 VMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhHh
Confidence            88999999974

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.94  E-value=5.6e-08  Score=92.36  Aligned_cols=277  Identities=13%  Similarity=0.075  Sum_probs=165.2

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      ....+++.++++|...+...--.+..++... .+.+  +    ++..|.+=+++++ +-++..|+++|++|..  ++...
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence            5677888999999999998888888776542 2322  1    4677888888888 9999999999999987  44444


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .     +.+.+.+.|.+.++-++..|+.+..++....|+..     .+++..+-+++ .+.++.++.+|+.++..++..+
T Consensus       139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence            3     35778889999999999999999999998877632     25888888888 7788999999999999998753


Q ss_pred             CCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHH
Q 009622          234 PQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (530)
Q Consensus       234 ~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L  309 (530)
                              ...+..++..+...   ++..+...++.+..+...+ +.     ....+++.+...|++.++.+...|++++
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                    11334444444332   4666666666665555443 21     2236778888999999999999999999


Q ss_pred             hHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHH
Q 009622          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE  389 (530)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  389 (530)
                      ..+......    .. ..++..|..++.++ ++.+|..|...|..++...|..++.     .-..+..++.+++..+...
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence            888652221    11 34456677778888 9999999999999998876665432     3346677788888777666


Q ss_pred             HHHHHH
Q 009622          390 AAWAIS  395 (530)
Q Consensus       390 a~~aL~  395 (530)
                      |..+|.
T Consensus       344 Aittll  349 (355)
T 3tjz_B          344 AITTLL  349 (355)
T ss_dssp             ------
T ss_pred             HHHHhh
Confidence            665554

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.93  E-value=5.6e-08  Score=83.80  Aligned_cols=226  Identities=17%  Similarity=0.159  Sum_probs=172.3

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009622          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  321 (530)
                      ...+..|..++...|+.++.+++.+|..+....++......-..+++.++.++.+.+..+...|+++++.+..+.+-.-.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45778899999999999999999999999876544444444447899999999999999999999999999987663322


Q ss_pred             HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009622          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      .+.  .+...|..++.++ ++-++.+|+-.++-+--.++.       .+++..+..++.+.+.+++..+..++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            222  3467788888877 999999999999998433211       136778888898889999999999999999843


Q ss_pred             -CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCC
Q 009622          402 -THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDN  479 (530)
Q Consensus       402 -~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~  479 (530)
                       +++.     -.+++.-+-++|+++|+.++..++.++..++...-.        +| ...-+  .+......+|. -...
T Consensus       182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--------~~-~~~~~--~~~~~~v~~l~~~~~~  245 (265)
T 3b2a_A          182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--------EN-VKIEL--LKISRIVDGLVYREGA  245 (265)
T ss_dssp             SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--------SC-CHHHH--HHHHHHHHHGGGCSSC
T ss_pred             CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--------Hh-HHHHH--HHHHHHHHHHHHhcCC
Confidence             2221     235677888899999999999999999999876322        11 12212  34456667777 6788


Q ss_pred             HHHHHHHHHHHHHh
Q 009622          480 AEIYEKSVKLLETY  493 (530)
Q Consensus       480 ~~v~~~a~~il~~~  493 (530)
                      |.+..+|..+-+..
T Consensus       246 ~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          246 PIIRLKAKKVSDLI  259 (265)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            88999998776653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.86  E-value=7.1e-07  Score=73.65  Aligned_cols=217  Identities=14%  Similarity=0.163  Sum_probs=166.7

Q ss_pred             hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHH
Q 009622          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDK  277 (530)
Q Consensus       199 ~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~  277 (530)
                      +..++..++.+| ++.-..++.+|+..++.++...+    ......+..|+.+++ +..-..-..+..+++.++...++.
T Consensus        30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            445788888988 66677899999999999998754    234555666666655 445666678889999998877765


Q ss_pred             HHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       278 ~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      +.     +++|.+..-..-++++++....++|+.++..++...     .+++.-+..++.+. +..=|..|...++.+..
T Consensus       105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltsk-d~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSK-NREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred             HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence            55     567888888888899999999999999999888654     35667888999987 77777777778877766


Q ss_pred             CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHH
Q 009622          358 GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGL  437 (530)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l  437 (530)
                      ....++     ..++|.|+.+|.+.+.-||..|..+|.+++.. ++..++.      +...+.=+++.+..+....-.+|
T Consensus       174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred             cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence            554433     35789999999999999999999999999997 4444333      33444556777777888888888


Q ss_pred             HHHHhh
Q 009622          438 ENILKV  443 (530)
Q Consensus       438 ~~ll~~  443 (530)
                      ..+.-.
T Consensus       242 ~rl~l~  247 (253)
T 2db0_A          242 SRLLLL  247 (253)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            888654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.85  E-value=1.4e-08  Score=107.31  Aligned_cols=196  Identities=15%  Similarity=0.087  Sum_probs=149.2

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH-HHhhCCCCchhHHHHHHHHhHhhcCC-chh
Q 009622          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL-AEFLMHPSPSVLIPALRTVGNIVTGD-DMQ  319 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L-~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~  319 (530)
                      ..++|. +..|+++++..+..||++|++++. ++.....+...+++..+ ..+|.+++..++..|+++|+||+... ...
T Consensus        34 ~~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILPV-LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHHH-HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHH-HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            345554 456899999999999999999996 45566777788888765 55788899999999999999998653 566


Q ss_pred             hHHHhhcCchHHHHHhhcCCCc---------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH
Q 009622          320 TQCVIEYQALPCLLNLLSGNYK---------------------KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVAL  378 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~---------------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l  378 (530)
                      ...++..|+++.|..++... .                     ..+...++++|.++|.++.+....+...+.++.|+..
T Consensus       112 ~~~l~~~~il~~L~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~  190 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAV-LETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR  190 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHH-HHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhh-HHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence            67888999999999988531 1                     1234567889999998888888888888999999998


Q ss_pred             HhcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH---HHHhccCCCChHHHHHHHHHHHHHHh
Q 009622          379 LENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK---PLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       379 l~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~---~L~~lL~~~~~~v~~~al~~l~~ll~  442 (530)
                      +.+.   ..+++..|+.+|.+++.. +.+....+.+.+...   .+..+.+..++ .+..+++.+.+++.
T Consensus       191 L~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~  258 (684)
T 4gmo_A          191 LISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence            8544   368999999999999986 567788877766533   33333334443 34456778888764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.84  E-value=1.6e-06  Score=84.11  Aligned_cols=322  Identities=12%  Similarity=0.114  Sum_probs=195.9

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCc---hhhhhHhhcCC-hHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          158 HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSP---RCRDLVLSQGG-LVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       158 ~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~---~~~~~i~~~~~-i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      ..++..++.+|.. ...++.+..+..+..+..+.+   .....+..... ...+........+.-....++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            3456778888875 778899999999999988776   22222222221 222333332344555556666666666543


Q ss_pred             CCCCChhhhhchHH--HHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhhCC----C------
Q 009622          233 KPQPPFDQVSPALP--ALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFLMH----P------  297 (530)
Q Consensus       233 ~~~~~~~~~~~~l~--~L~~ll~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~----~------  297 (530)
                      .+. .......++.  -+...+... +.+.+.-++.++..+...+.. ...+.+.  ..++.++.++..    .      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322 3333333444  344445442 344455567777777665443 3444432  245555543321    1      


Q ss_pred             -------CchhHHHHHHHHhHhhcCCchhhHHHhhcCch--HHHHHhhcCCCchhHHHHHHHHHHHHhcCCH----HHHH
Q 009622          298 -------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL--PCLLNLLSGNYKKSIKKEACWTVSNITAGNR----EQIQ  364 (530)
Q Consensus       298 -------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~  364 (530)
                             ...++..++.+++-++. ++.....+...++.  +.|+.+++......+-+-+..++.|+....+    ..+.
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   23567888899988876 44455555555543  6677777766578899999999999988542    2233


Q ss_pred             -HHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHHhhc---------------------CC----C----HHHHHHHHH
Q 009622          365 -AVIEANIIGPLVALLENA---EFDIKKEAAWAISNATS---------------------GG----T----HEQIKFLVI  411 (530)
Q Consensus       365 -~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~---------------------~~----~----~~~~~~l~~  411 (530)
                       .++..++ +.++..|...   |+++....-.....+-.                     -.    +    .+....+.+
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence             2333445 4455656543   56655443332222210                     00    1    111112222


Q ss_pred             c--CChHHHHhccCC----------CChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCC
Q 009622          412 Q--GCIKPLCDLLVC----------PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN  479 (530)
Q Consensus       412 ~--~~l~~L~~lL~~----------~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  479 (530)
                      .  .++..|+++|++          .|+.++..|+.=|+.+++..+.           .+..+++.||.+.+.+|+.|+|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-----------gr~i~~~lg~K~~VM~Lm~h~d  460 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-----------SIDVLDKTGGKADIMELLNHSD  460 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-----------HHHHHHHHSHHHHHHHHTSCSS
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-----------hhHHHHHcCcHHHHHHHhcCCC
Confidence            2  237788888873          4788899999999999988765           3678889999999999999999


Q ss_pred             HHHHHHHHHHHHHhC
Q 009622          480 AEIYEKSVKLLETYW  494 (530)
Q Consensus       480 ~~v~~~a~~il~~~~  494 (530)
                      ++|+..|...++++.
T Consensus       461 ~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          461 SRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.84  E-value=5.4e-08  Score=92.44  Aligned_cols=309  Identities=13%  Similarity=0.108  Sum_probs=174.0

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009622           86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV  165 (530)
Q Consensus        86 ~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  165 (530)
                      |+.-...++..+..+...+..-+..++  ..+.+.+++++.+.+ ..++.-....+.+++...++..      =++..|.
T Consensus        40 ~~~kc~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~  110 (355)
T 3tjz_B           40 NPRKCAHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDVI------IVTSSLT  110 (355)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCGG------GGHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHHH------HHHHHHH
Confidence            444444455555544443312111121  234666788999988 8999999888888888533322      2467888


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchH
Q 009622          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL  245 (530)
Q Consensus       166 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l  245 (530)
                      +=+.++++-++-.|+++|++|....  .-+.     ..+++-+.+ .+.++.+++.|+.+...|....|    ....+.+
T Consensus       111 kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p----e~v~~~~  178 (355)
T 3tjz_B          111 KDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF----DVVKRWV  178 (355)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH----HHHHTTH
T ss_pred             hhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH----HHHHHHH
Confidence            8889999999999999999996443  1111     455566666 88999999999999999987653    2446788


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhHhhcCC-chhhH
Q 009622          246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVTGD-DMQTQ  321 (530)
Q Consensus       246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~~~~~a~~~L~nl~~~~-~~~~~  321 (530)
                      +.+..++.+.++.++.+++.++..+...+...         +..++..+...   ++-.+...++.++.++..+ +..  
T Consensus       179 ~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~--  247 (355)
T 3tjz_B          179 NEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR--  247 (355)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh--
Confidence            89999999999999999999999987655322         23334444332   3445555666666666544 222  


Q ss_pred             HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009622          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                         ...+++.+..+|++. ++.|..+|++++..+......    .. ..++..|..++.++++.+|..|+..|..++.. 
T Consensus       248 ---~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-  317 (355)
T 3tjz_B          248 ---DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-  317 (355)
T ss_dssp             ------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred             ---HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-
Confidence               245677888889988 999999999999998552222    11 23456677778889999999999999998885 


Q ss_pred             CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          402 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       402 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      .|+...     .+-..+.+++.++|..+...|+   ..+++-|
T Consensus       318 ~P~~v~-----~~n~~ie~li~d~n~sI~t~Ai---ttllktg  352 (355)
T 3tjz_B          318 HPSAVT-----ACNLDLENLVTDANRSIATLAI---TTLLKTG  352 (355)
T ss_dssp             -------------------------------------------
T ss_pred             CcHHHH-----HHHHHHHHHccCCcHhHHHHHH---HHhhhcc
Confidence            233221     2455677888888877766554   4455443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.81  E-value=1.2e-06  Score=92.70  Aligned_cols=270  Identities=14%  Similarity=0.117  Sum_probs=186.3

Q ss_pred             HHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHhh
Q 009622          118 VPRFVEFLL---REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS--------DDVREQAVWALGNI  186 (530)
Q Consensus       118 v~~Lv~ll~---~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~~~~~a~~~L~nl  186 (530)
                      +..|-..|.   +++ +.++..|+.+|+.+..+...  .      ++..|...|.+++        +.++..|+..||-+
T Consensus       394 l~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          394 KKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            555666665   344 89999999999999986543  1      3567777776544        67888899999987


Q ss_pred             hCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHH
Q 009622          187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACW  265 (530)
Q Consensus       187 ~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~  265 (530)
                      ..++.  +..     ++..|..++ .+.+..+...++.+|..+..+..+      ..++..|+..+ .+.+..++..++.
T Consensus       465 ~~GS~--~ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aal  530 (963)
T 4ady_A          465 AMGSA--NIE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLAV  530 (963)
T ss_dssp             STTCC--CHH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             hcCCC--CHH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHHH
Confidence            64432  112     456677777 344445666888888876554321      23344444443 3557889999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhH
Q 009622          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (530)
Q Consensus       266 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  344 (530)
                      +|+.+..+.++.         ++.++..|. +.++.++..++.+++--..+....       ..++.|+..+.++.+..+
T Consensus       531 gLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~V  594 (963)
T 4ady_A          531 GLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDV  594 (963)
T ss_dssp             HHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHH
T ss_pred             HHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHH
Confidence            999887666543         344555554 467888888888887555544332       235555555544437889


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccC
Q 009622          345 KKEACWTVSNITAGNREQIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  423 (530)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  423 (530)
                      |..|+.+|+.++.+.++         .++.++.. +++.++.+|..|.+||+.+..+....        .+++.|..+++
T Consensus       595 RraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~~  657 (963)
T 4ady_A          595 RRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLTK  657 (963)
T ss_dssp             HHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHHT
T ss_pred             HHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHcc
Confidence            99999999999877643         45666664 45679999999999999998754211        25777888899


Q ss_pred             CCChHHHHHHHHHHHHHHhh
Q 009622          424 CPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       424 ~~~~~v~~~al~~l~~ll~~  443 (530)
                      +.+..|+..|+.+|..+...
T Consensus       658 D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          658 DPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             CSSHHHHHHHHHHHHHHSTT
T ss_pred             CCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999987643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.77  E-value=9.5e-08  Score=87.29  Aligned_cols=186  Identities=15%  Similarity=0.204  Sum_probs=143.5

Q ss_pred             HHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009622          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (530)
Q Consensus       204 ~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  282 (530)
                      +.+.+.+ .+.+...+..++..|..++...+.........+++.|...+. +.+..++..++.+++.++..-........
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4477777 788999999999999999876322212234677889999995 88999999999999999854322222222


Q ss_pred             HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHH
Q 009622          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NRE  361 (530)
Q Consensus       283 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  361 (530)
                       ..+++.++..+.+.+..++..|..++..++....  .     ..+++.+...+.+. ++.+|..++..|+.+... .+.
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence             2578999999999999999999999999987443  1     23678899999988 999999999999997653 333


Q ss_pred             H-HHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          362 Q-IQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       362 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                      . ....+ ..++|.|..++.+.+++||..|..+++.++..
T Consensus       168 ~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          168 ALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            2 12222 25899999999999999999999999999864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.75  E-value=4.1e-08  Score=89.75  Aligned_cols=186  Identities=13%  Similarity=0.149  Sum_probs=142.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhh
Q 009622          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (530)
Q Consensus       162 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  241 (530)
                      +.+...+.+.++..|..++..|..++...+...... ...+++.|...+.++.+..++..++.++..|+..-...-....
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            457888889999999999999999986533221110 1134666667773378999999999999999965432223455


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC-chh-
Q 009622          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DMQ-  319 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~-  319 (530)
                      ..++|.++..+.+.+..++..+..++..+.....  ..     .+++.+...+.+.++.++..++..|+.+.... +.. 
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            7789999999999999999999999999876543  12     46788899999999999999999999976543 321 


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ....+ ..+++.|..++.+. ++.+|..|..+++.++.
T Consensus       170 ~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            22222 36899999999988 99999999999999975

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.68  E-value=1.7e-06  Score=74.78  Aligned_cols=187  Identities=16%  Similarity=0.177  Sum_probs=149.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +.+..|..+|.+.+ +.++..|+.+|..+...-+.......-..+++.++.++.+.+..+.-.|+.+|..|..+.|-...
T Consensus        33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            46888999998888 99999999999999985434444433346799999999999999999999999999988775444


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                      .+..  .+..+..++ .+++.-+...+...+..+--      ......++..+..++.+.|..++..++.++.+++..+.
T Consensus       112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            4333  577788888 68899999999999998821      12236678888999999999999999999999986543


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009622          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       276 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~  315 (530)
                      +.  .++ .+++.-+-.+|++.++.++..|+.++-.+.+.
T Consensus       183 D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          183 DS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             SC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            21  011 25677788899999999999999999999875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.61  E-value=3.5e-07  Score=83.53  Aligned_cols=194  Identities=10%  Similarity=0.096  Sum_probs=141.5

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHh-hhCCCchhhhhHhh-cCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC-CCCh-
Q 009622          163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF-  238 (530)
Q Consensus       163 ~L~~lL~~~~~~~~~~a~~~L~n-l~~~~~~~~~~i~~-~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~-  238 (530)
                      .+...+.+.++.-|..++..|.. ++.+.+........ ..++..|.+.+..+.+..++..++.++..|+.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35667788999999999999999 87554432210011 12455666677567788999999999999997644 3333 


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch
Q 009622          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (530)
Q Consensus       239 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~  318 (530)
                      .....++|.++..+......++..+..++..++...+.......-..+++.|...|.+.++.++..++.+|+.++.....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            56677899999999988899988888888777653211000000013677888999999999999999999999875553


Q ss_pred             ---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       319 ---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                         .....+...++|.|.+++.+. ++.+|..|..+++.++.
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence               222223357899999999998 99999999999999875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.54  E-value=6.2e-07  Score=81.83  Aligned_cols=192  Identities=11%  Similarity=0.098  Sum_probs=140.8

Q ss_pred             HHHHhhcCCCchhHHHHHHHHhhh-hccCCCCCC--hhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh-HHHH
Q 009622          205 PLLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPP--FDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ  279 (530)
Q Consensus       205 ~Ll~ll~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~l~~l~~~~~-~~~~  279 (530)
                      .+...+ .+.+..-+..++..|.. ++.+.+...  ......++..|.+.+ ...+..++..++.+++.++..-. ..+.
T Consensus        20 ~f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           20 DFQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             hHHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence            345556 77888999999999999 886533222  222356788888889 67889999999999999985321 1111


Q ss_pred             -HHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009622          280 -AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (530)
Q Consensus       280 -~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  358 (530)
                       .... .+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++..
T Consensus        99 ~~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A           99 KDYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHH
Confidence             1222 4788999999999999999998888888864421110000113678899999998 999999999999999874


Q ss_pred             CH---HHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          359 NR---EQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       359 ~~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .+   ......+...++|.|..++.+.+..||..|..+++.++.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            33   334344424799999999999999999999999998875

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.50  E-value=2.7e-08  Score=81.35  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=92.1

Q ss_pred             hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009622          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (530)
Q Consensus       284 ~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (530)
                      ...++.+..+|.++++.++..|+++|+.+..  +          .++.|..+|.++ ++.+|..|+|+|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--H---
Confidence            3567889999999999999999999987642  1          258899999988 99999999999999853  2   


Q ss_pred             HHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009622          364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN  439 (530)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~  439 (530)
                            ..++.|+..+.++++.||..|+++|.++..   +         ..++.|..+++++++.++..+..+|..
T Consensus        73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                  257889999999999999999999999853   2         247788888999999999999888754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.50  E-value=1.9e-08  Score=82.22  Aligned_cols=121  Identities=21%  Similarity=0.186  Sum_probs=92.6

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhH
Q 009622          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  321 (530)
                      ...++.+..+|.++++.++..++++|+.+...            .++.|+.+|.++++.++..|+++|+++..       
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence            45677888999999999999999988876421            24778899999999999999999999863       


Q ss_pred             HHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                          ...++.|...+.++ ++.||..|+|+|+++..  +         ..++.|+.++.++++.||..|+++|.++
T Consensus        72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                13478889999888 99999999999999852  2         3578899999988999999999998753

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.48  E-value=6.1e-05  Score=82.59  Aligned_cols=340  Identities=11%  Similarity=0.075  Sum_probs=188.2

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009622           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID  157 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv-~ll~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~  157 (530)
                      +.++++...++.++..+++-   -+...+++.++++.++ .++.  + +.++..|+.||..+....   +  .....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            35677777888998888764   3466777889999999 8885  3 789999999999998732   2  11111110


Q ss_pred             --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHhhhCCC-------chhhhhHhhcCChHHHHHhhcCCC
Q 009622          158 --HGAVPIF--------------VKLLYSPSDDVREQAVWALGNIAGDS-------PRCRDLVLSQGGLVPLLAQLNGQP  214 (530)
Q Consensus       158 --~g~i~~L--------------~~lL~~~~~~~~~~a~~~L~nl~~~~-------~~~~~~i~~~~~i~~Ll~ll~~~~  214 (530)
                        .+.++.+              ...-...+.+..+..+.++..+....       +..+..+.  .++..|+.+. ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              11112234555555666665443211       11121111  1223344433 556


Q ss_pred             chhHHHHHHHHhhhhccCCC--CCChhhhh----chHHHHHHhhcCCC-------------------hh--HHHHHH-HH
Q 009622          215 KLSMLRNATWTLSNFCRGKP--QPPFDQVS----PALPALAHLIHSND-------------------DE--VLTDAC-WA  266 (530)
Q Consensus       215 ~~~~~~~a~~~L~~L~~~~~--~~~~~~~~----~~l~~L~~ll~~~d-------------------~~--v~~~a~-~~  266 (530)
                      +.++...++.....|+..--  ........    .+++.++.-+.-++                   .+  ...... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            78888888887777765321  11222223    33444444333221                   00  111011 22


Q ss_pred             HHHhccCC-hHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-----
Q 009622          267 LSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-----  338 (530)
Q Consensus       267 l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-----  338 (530)
                      |.+++.-. ++..+     -+++.+...+.+  .+|..++.+++++|.++.+.......-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            22222111 11111     123344444443  579999999999999998765443333334577788888763     


Q ss_pred             CCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH--------
Q 009622          339 NYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK--------  407 (530)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~--------  407 (530)
                      . ...++..++|++|.++.-   .++...     .++..|++.+..+++.++..|++++.+++..+......        
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p  585 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP  585 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence            2 455677899999998762   333222     35556777777777899999999999999854322210        


Q ss_pred             HHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009622          408 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       408 ~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~  445 (530)
                      ++  ..++..+......-+++-+..+.+++..++...+
T Consensus       586 ~~--~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          586 FI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             hH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            10  1123333333344455666677777777776543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.47  E-value=6.3e-05  Score=73.13  Aligned_cols=321  Identities=11%  Similarity=0.069  Sum_probs=194.1

Q ss_pred             CHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCC--CcHHHHHHcCCH-HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009622           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS--PPIEEVIRSGVV-PRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (530)
Q Consensus        74 ~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~--~~~~~~~~~g~v-~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~  149 (530)
                      .+..+++.|.. .+.++....+..+..++...+.  .....+.+..-. ..+.......+++-....+..++..++....
T Consensus        78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~  157 (480)
T 1ho8_A           78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  157 (480)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence            66788888884 6678888888899999887310  122233333222 2233322234425555666666666654332


Q ss_pred             h---hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcC--ChHHHHHhhc------------
Q 009622          150 E---HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLN------------  211 (530)
Q Consensus       150 ~---~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~--~i~~Ll~ll~------------  211 (530)
                      .   ....+....   -++..|.. .+...+..++.+|..+..... +|..+.+.+  .+++++..+.            
T Consensus       158 ~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          158 HNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             CCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             ccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            2   222222111   34455544 234556678888888877654 787776543  3566654432            


Q ss_pred             ----CCCchhHHHHHHHHhhhhccCCCCCChhhhhch--HHHHHHhhcC-CChhHHHHHHHHHHHhccCCh----HHHH-
Q 009622          212 ----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ-  279 (530)
Q Consensus       212 ----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--l~~L~~ll~~-~d~~v~~~a~~~l~~l~~~~~----~~~~-  279 (530)
                          .....+++..++.|++-|+...+.........+  ++.|+..++. ..+.+..-++.++.|+.....    .... 
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~  313 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  313 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence                112467789999999999987532222222232  3556666664 468888889999999987652    2222 


Q ss_pred             HHHHhCcHHHHHHhhCCC---CchhHHHHHHHHhH-------hh--------------cCCchhh-HHHh----------
Q 009622          280 AVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGN-------IV--------------TGDDMQT-QCVI----------  324 (530)
Q Consensus       280 ~~~~~~~i~~L~~lL~~~---~~~~~~~a~~~L~n-------l~--------------~~~~~~~-~~~~----------  324 (530)
                      .++..+++ .++..|...   ++++....-.....       ++              .-++... ..+.          
T Consensus       314 ~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~  392 (480)
T 1ho8_A          314 LLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  392 (480)
T ss_dssp             HHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence            23333444 455555543   33332221111111       11              0111111 1111          


Q ss_pred             hcCchHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009622          325 EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (530)
Q Consensus       325 ~~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  395 (530)
                      +..++..|.++|.+         +.++.+..-||.=|+.++.+.|..+..+-+.|+=..+++++.++|++||.+|+.|+.
T Consensus       393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ  472 (480)
T 1ho8_A          393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ  472 (480)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            22478899999973         227888999999999999988888887778899999999999999999999999998


Q ss_pred             Hhhc
Q 009622          396 NATS  399 (530)
Q Consensus       396 nl~~  399 (530)
                      .+..
T Consensus       473 klm~  476 (480)
T 1ho8_A          473 AIIG  476 (480)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.38  E-value=0.00023  Score=78.55  Aligned_cols=344  Identities=10%  Similarity=0.044  Sum_probs=195.2

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC------h
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------S  149 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~------~  149 (530)
                      ..++..+.+++..++...+.++..++...-...+     .++++.|++.+++++ +..+..++.+|..++...      +
T Consensus        88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~  161 (960)
T 1wa5_C           88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD  161 (960)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence            3556666666788999999999998875322223     457999999998877 788899999999998732      1


Q ss_pred             hhHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHhhhC-CCchh-hhhHhhcCChHHHHH
Q 009622          150 EHTKVV---IDHGAVPIFVK-------LLYSPSD---------DVREQAVWALGNIAG-DSPRC-RDLVLSQGGLVPLLA  208 (530)
Q Consensus       150 ~~~~~~---~~~g~i~~L~~-------lL~~~~~---------~~~~~a~~~L~nl~~-~~~~~-~~~i~~~~~i~~Ll~  208 (530)
                      +.+..+   +. ...+.+++       .+..+..         ++...++.++.++.. +.+.. .+.+  ...++.+.+
T Consensus       162 ~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~  238 (960)
T 1wa5_C          162 ELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHK  238 (960)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHH
Confidence            222211   11 12333333       2443211         233346666666653 22321 1111  112334444


Q ss_pred             hhcCC-----Cc---------hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-----CCChhHHHHHHHHHHH
Q 009622          209 QLNGQ-----PK---------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-----SNDDEVLTDACWALSY  269 (530)
Q Consensus       209 ll~~~-----~~---------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~l~~  269 (530)
                      ++...     .+         ..++..++.++..++...+..-......+++.+...+.     ..++.+...++..+..
T Consensus       239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~  318 (960)
T 1wa5_C          239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA  318 (960)
T ss_dssp             HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred             HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence            44211     11         24667778888877754321111223445555555554     3356778888888877


Q ss_pred             hccCChHHHHHHHHhCcHH-----HHHHhhC-----------------------CCCchhHHHHHHHHhHhhcCCchhhH
Q 009622          270 LSDGTNDKIQAVIEAGVFP-----RLAEFLM-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       270 l~~~~~~~~~~~~~~~~i~-----~L~~lL~-----------------------~~~~~~~~~a~~~L~nl~~~~~~~~~  321 (530)
                      ++..... ...+.....++     .+++.+.                       +..+..|..|..+|..++...+..  
T Consensus       319 ~~~~~~~-~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~--  395 (960)
T 1wa5_C          319 VTRIPKY-FEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL--  395 (960)
T ss_dssp             HHTSHHH-HGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred             HhCcHhH-HHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence            7654221 11000001222     2222221                       112356777788888777644321  


Q ss_pred             HHhhcCchHHHHHhhc------CCCchhHHHHHHHHHHHHhcCC---H---H------HHHHHHHhCcHHHHHHHHhcC-
Q 009622          322 CVIEYQALPCLLNLLS------GNYKKSIKKEACWTVSNITAGN---R---E------QIQAVIEANIIGPLVALLENA-  382 (530)
Q Consensus       322 ~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~---~---~------~~~~l~~~~~i~~L~~ll~~~-  382 (530)
                       ++ ..+++.+...+.      +. +...|+.|..+++.++.+.   .   .      ....++..-++    ..+.++ 
T Consensus       396 -v~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~----p~l~~~~  468 (960)
T 1wa5_C          396 -VT-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIA----PDLTSNN  468 (960)
T ss_dssp             -HH-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTH----HHHHCSS
T ss_pred             -HH-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhH----HHhcCCC
Confidence             11 123444555554      34 6778899999999997531   1   0      22222222233    334555 


Q ss_pred             --chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          383 --EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       383 --~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                        ++.+|..|+|+++.++..-.++...     .+++.++..|.++++.|+..|+.+|.+++..
T Consensus       469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          469 IPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence              7899999999999998865444333     3577888888888899999999999999874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.36  E-value=3.9e-05  Score=82.25  Aligned_cols=301  Identities=12%  Similarity=0.127  Sum_probs=208.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---h
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---S  149 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~---~  149 (530)
                      ..+..+++.+...+......|+..+..++.......   .+..+++..|.+.+.+.. ..  +.|+.++..++...   +
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~   87 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP   87 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence            355666676776556666778888888776431111   011256778888887655 23  88999999999533   1


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       150 ~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      ..-..++  +.++.++..+.+....++..|..++..++..-+...-    ..+++.|+..+.....-.....++.++..|
T Consensus        88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~  161 (986)
T 2iw3_A           88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM  161 (986)
T ss_dssp             TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            2222233  6789999999888889999888888877744332211    336888988885555788899999999999


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHH
Q 009622          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~  306 (530)
                      +...+..-......++|.+...+-...+++...+..++..++.   +.+  +.     .++|.|++.+.+++.  ...++
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d--~~-----~~~~~~~~~~~~p~~--~~~~~  232 (986)
T 2iw3_A          162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD--IE-----RFIPSLIQCIADPTE--VPETV  232 (986)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT--TG-----GGHHHHHHHHHCTTH--HHHHH
T ss_pred             HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc--hh-----hhHHHHHHHhcChhh--hHHHH
Confidence            9765433334457888999999988899999988888877763   222  22     678999999988753  55566


Q ss_pred             HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhcC-c
Q 009622          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLENA-E  383 (530)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~-~  383 (530)
                      ..|+.-..-..-....  -+=.+|.|..-|... ...+++.++-++.|+|.  .+|.....++. .++|.|-+..+.- +
T Consensus       233 ~~l~~~tfv~~v~~~~--l~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~  308 (986)
T 2iw3_A          233 HLLGATTFVAEVTPAT--LSIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIAD  308 (986)
T ss_dssp             HHHTTCCCCSCCCHHH--HHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCS
T ss_pred             HHhhcCeeEeeecchh--HHHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCC
Confidence            6666554322211111  112366777777766 88899999999999998  67776666654 5777777766554 8


Q ss_pred             hhHHHHHHHHHHHhh
Q 009622          384 FDIKKEAAWAISNAT  398 (530)
Q Consensus       384 ~~v~~~a~~aL~nl~  398 (530)
                      |++|..|..|+..|.
T Consensus       309 pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          309 PEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988888874

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.35  E-value=0.00011  Score=81.25  Aligned_cols=331  Identities=10%  Similarity=-0.005  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc---------------CCCCHHHHHHHHHHHHHHhcCCh-hh
Q 009622           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---------------REDYPQLQFEAAWALTNIASGTS-EH  151 (530)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~---------------~~~~~~i~~~a~~~L~~l~~~~~-~~  151 (530)
                      .++..++.++..++.....+..   ....+++.+.. |.               ..+.++++..|+.++..+..... ..
T Consensus       204 ~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  279 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN  279 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred             hHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence            6778888888876652001211   23445666666 41               11237899999999999998432 11


Q ss_pred             HHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHhhhCCCchh-h-----------hhHhhcCChHHHHHh
Q 009622          152 TKVVIDHGAVPIFVK-------LLYSPS---DDVREQAVWALGNIAGDSPRC-R-----------DLVLSQGGLVPLLAQ  209 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~-------lL~~~~---~~~~~~a~~~L~nl~~~~~~~-~-----------~~i~~~~~i~~Ll~l  209 (530)
                      ....+. .+++.++.       .+...+   .+.....+..+..++...+.. .           ..+  ...++.++.+
T Consensus       280 ~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~  356 (971)
T 2x1g_F          280 YPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHC  356 (971)
T ss_dssp             CHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHH
Confidence            111111 12233332       223334   256666666666665332211 1           011  1234444444


Q ss_pred             hcC----CCchhHHHHHHHHhhhhccCC--------CCCCh----hhhhchHHHHHHhhcCCCh---------------h
Q 009622          210 LNG----QPKLSMLRNATWTLSNFCRGK--------PQPPF----DQVSPALPALAHLIHSNDD---------------E  258 (530)
Q Consensus       210 l~~----~~~~~~~~~a~~~L~~L~~~~--------~~~~~----~~~~~~l~~L~~ll~~~d~---------------~  258 (530)
                      ...    ..+..+...+++++..++...        .....    .....+++.++..+..++.               .
T Consensus       357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~  436 (971)
T 2x1g_F          357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC  436 (971)
T ss_dssp             HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred             HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence            422    347888999999998887521        11111    1223444555444432211               2


Q ss_pred             HHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCC-----CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009622          259 VLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (530)
Q Consensus       259 v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L  332 (530)
                      .+..+..++..++.... ....     -+++.+...+.+     .+|..++.++.+++.++.+......     ..++.+
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~-----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l  506 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILE-----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRL  506 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHH-----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHH
Confidence            33445555555554322 2222     122333333433     6889999999999999987654321     223333


Q ss_pred             HHhh---c--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009622          333 LNLL---S--GNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK  407 (530)
Q Consensus       333 ~~lL---~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~  407 (530)
                      +.++   .  +. ++.+|..++|+++.++..-......+  ..+++.|+..++   +.|+..|++++.+++.........
T Consensus       507 ~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p  580 (971)
T 2x1g_F          507 MRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKP  580 (971)
T ss_dssp             HHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccc
Confidence            3332   2  23 78999999999999986211111111  135667777773   789999999999999765433322


Q ss_pred             HHHHcCChHHHHhccCC--CChHHHHHHHHHHHHHHhh
Q 009622          408 FLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       408 ~l~~~~~l~~L~~lL~~--~~~~v~~~al~~l~~ll~~  443 (530)
                      ++  ..++..|..++..  -+.+.+..+++++..++..
T Consensus       581 ~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          581 YA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            22  2456677777766  3567888889999988864

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.23  E-value=0.0006  Score=75.92  Aligned_cols=343  Identities=10%  Similarity=0.085  Sum_probs=182.5

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHhcCC--hh---hHHHHHh-
Q 009622           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID-  157 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~-ll~~~~~~~i~~~a~~~L~~l~~~~--~~---~~~~~~~-  157 (530)
                      .++.++..++.++..+++.   -+...+.+..+++.+.+ ++.  + +.++..|+.||..+....  +.   ....+.. 
T Consensus       207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            4567888888888887654   22344556777777773 443  4 899999999999998742  21   1111111 


Q ss_pred             -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHhhhC-------CCchhhhhHhhcCChHHHHHhhcCCCc
Q 009622          158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (530)
Q Consensus       158 -~g~i~~L~~-lL-------------~~~~~~~~~~a~~~L~nl~~-------~~~~~~~~i~~~~~i~~Ll~ll~~~~~  215 (530)
                       .+++..+.. ++             ...+.+.....+..+..+..       ..+..+..+  ..+++.++... ..++
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence             122222221 11             12233444444444433321       111122221  12455555555 4567


Q ss_pred             hhHHHHHHHHhhhhcc----CCCCCC--hhhhhchHHHHHHhhcCC-------------------Ch---hHHHHHHHHH
Q 009622          216 LSMLRNATWTLSNFCR----GKPQPP--FDQVSPALPALAHLIHSN-------------------DD---EVLTDACWAL  267 (530)
Q Consensus       216 ~~~~~~a~~~L~~L~~----~~~~~~--~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~l  267 (530)
                      .++...++..+..+++    ......  ......+++.++..+..+                   |.   .....+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            8888888888888876    321111  123344555555544321                   00   1122233444


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhC--CCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----CCc
Q 009622          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----NYK  341 (530)
Q Consensus       268 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~  341 (530)
                      ..++.......-.    -+.+.+-..+.  ..+|..+..+++++|.++.+.........-..+++.+..+...    ..+
T Consensus       438 ~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~  513 (1049)
T 3m1i_C          438 VYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK  513 (1049)
T ss_dssp             HHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH
T ss_pred             HHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch
Confidence            4444222211111    12344444454  3578899999999999986544332111122345555554332    114


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH--------HHHHHcC
Q 009622          342 KSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI--------KFLVIQG  413 (530)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~~~~  413 (530)
                      +.++..++|+++.++.....+-..+  ..+++.++..+.++++.|+..|+++|.+++..+.....        .++  ..
T Consensus       514 ~~v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~  589 (1049)
T 3m1i_C          514 AVVASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QT  589 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HH
Confidence            5566679999998875211221222  23677788888888899999999999999985432211        111  12


Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ++..+..++..-+.+-.....+++..++...
T Consensus       590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          590 IIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence            3333444444445544556667777776543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.22  E-value=7.5e-05  Score=82.35  Aligned_cols=258  Identities=10%  Similarity=0.087  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHhhhCCCchhhhhHh---h-cC
Q 009622          132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCRDLVL---S-QG  201 (530)
Q Consensus       132 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~~~~~a~~~L~nl~~~~~~~~~~i~---~-~~  201 (530)
                      ..+..|..+|..++...++   .++. .+++.+.+.+.      +.++..++.|+.+++.++.....+.....   . ..
T Consensus       376 s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            4677788888888874332   1211 12344444454      46788999999999999854211110000   0 01


Q ss_pred             ChH----HHHHhhcCC--CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC-
Q 009622          202 GLV----PLLAQLNGQ--PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT-  274 (530)
Q Consensus       202 ~i~----~Ll~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~-  274 (530)
                      ..+    .++..+...  .++-++..++|+++.++..-   .......+++.++..+.+++..|+..|+++|.+++... 
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            112    223333222  27889999999999999863   23467788899999998888999999999999988631 


Q ss_pred             ----------hHHHHHHHHhCcHHHHHHhhCCCC-----chhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh---
Q 009622          275 ----------NDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL---  336 (530)
Q Consensus       275 ----------~~~~~~~~~~~~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL---  336 (530)
                                .+.....+ ..+++.|+.++....     ......++.+++.++....+...... ..+++.|...+   
T Consensus       529 ~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH
Confidence                      11122112 145666777776641     11234566666665432221111111 12333444333   


Q ss_pred             -cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          337 -SGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       337 -~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                       +++.++.++..++.+++.++.. .++....+ ...++|.+..++.....++...+...+..+..
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence             3343667777888899888875 44443333 34578888888887766777777777777764

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.17  E-value=0.00014  Score=80.27  Aligned_cols=340  Identities=14%  Similarity=0.094  Sum_probs=188.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCC
Q 009622          126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (530)
Q Consensus       126 ~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~  202 (530)
                      .+.+ ...++.++++++.++.+-.+..     ...++.++..+   ..+++.++..++|+++.++..-....+ . -..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHH
Confidence            3344 6788999999999998643311     12334444433   335788999999999998743211111 1 2347


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 009622          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ  279 (530)
Q Consensus       203 i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~-~~~~  279 (530)
                      ++.++..+ .+  +.++..|++++.++|...+..-......++..+..++...  +...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            77888877 33  7899999999999997543222233456666667777653  56788888888888875442 3333


Q ss_pred             HHHHhCcHHHHHHhh----CCC-CchhHH---HHHHHHhHhhcCCch---------------------hhHHHhhcCchH
Q 009622          280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCVIEYQALP  330 (530)
Q Consensus       280 ~~~~~~~i~~L~~lL----~~~-~~~~~~---~a~~~L~nl~~~~~~---------------------~~~~~~~~~~l~  330 (530)
                      ..++ .+++.+...+    ... ++..+.   ..+.+|+.++..-..                     ..-..+...+++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            3332 3444444333    222 333333   445555555432110                     001112234556


Q ss_pred             HHHHhhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHH----hcC-chhHHHHHHHHHHHhhc--CCC
Q 009622          331 CLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALL----ENA-EFDIKKEAAWAISNATS--GGT  402 (530)
Q Consensus       331 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~-~~~v~~~a~~aL~nl~~--~~~  402 (530)
                      .+..++... .++.+.+.+|.++..++....+..     ..++|.++..+    ... .+    ..++.+..++.  +..
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~  757 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE  757 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence            666665421 166889999999998764211111     12344444332    221 22    23344444433  221


Q ss_pred             H---HHHHHHHHcCChHHHHhccC---CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc
Q 009622          403 H---EQIKFLVIQGCIKPLCDLLV---CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT  476 (530)
Q Consensus       403 ~---~~~~~l~~~~~l~~L~~lL~---~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  476 (530)
                      .   ..+..+.+ .++..+..++.   ..+++++......+..++......-..    ......     ..++.+.....
T Consensus       758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~----~~~~~~-----~i~~~~~~~l~  827 (963)
T 2x19_B          758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC----ERLDVK-----AVFQCAVLALK  827 (963)
T ss_dssp             TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC----TTSCHH-----HHHHHHHHHTT
T ss_pred             cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC----CcccHH-----HHHHHHHHHcC
Confidence            1   12222111 12333333332   246899999999999999876643210    000011     12344455567


Q ss_pred             CCCHHHHHHHHHHHHHhCCC
Q 009622          477 HDNAEIYEKSVKLLETYWLD  496 (530)
Q Consensus       477 ~~~~~v~~~a~~il~~~~~~  496 (530)
                      +++.++...+..++.+++..
T Consensus       828 ~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          828 FPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            89999999999999987753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.16  E-value=0.00024  Score=76.28  Aligned_cols=296  Identities=16%  Similarity=0.160  Sum_probs=196.3

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC--CCChhhh
Q 009622          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQV  241 (530)
Q Consensus       164 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~  241 (530)
                      +.+.+...+..-+..++..++++.......+  ....+++..+.+.+ .+....  +.|+.++..||....  .......
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGI-KDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHH-TSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHH-hccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            4444544333334556666776654332121  12235677777777 443333  999999999997652  2334455


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCC-CchhHHHHHHHHhHhhcCCchh
Q 009622          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~  319 (530)
                      -+.+|.++..+.+.+..|+..|-.++..+... ++...     ..+++.|+..|.+. .|..+..|+.++..++...+.+
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~  168 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ  168 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence            67888888888888888888877777666543 33222     25678888888765 7999999999999999766544


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      ...- -..++|.+...+.+. .++|++.|..++..+|.  ++.+.      ...+|.|++.+.+++ + --+++..|+.-
T Consensus       169 ~~~~-~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~-~-~~~~~~~l~~~  238 (986)
T 2iw3_A          169 VALR-MPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPT-E-VPETVHLLGAT  238 (986)
T ss_dssp             HHHH-HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTT-H-HHHHHHHHTTC
T ss_pred             HHHh-ccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChh-h-hHHHHHHhhcC
Confidence            3222 236899999999988 99999999999999987  44332      357999999998874 2 34445555544


Q ss_pred             hcCC--CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHH-
Q 009622          398 TSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-  474 (530)
Q Consensus       398 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-  474 (530)
                      +.-.  +......     .++.|.+-|....+.+...+.-++.|+++.-+.-..     ..+|...+     +..++.. 
T Consensus       239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~-----~~~f~~~l-----~p~~~~~~  303 (986)
T 2iw3_A          239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV-----IAPFLGKL-----LPGLKSNF  303 (986)
T ss_dssp             CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHTTT-----HHHHHHHT
T ss_pred             eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH-----Hhhhhhhh-----hhHHHHHh
Confidence            3322  1111111     366677778888888999999999999987654221     22333333     4556653 


Q ss_pred             hcCCCHHHHHHHHHHHHHhC
Q 009622          475 QTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       475 ~~~~~~~v~~~a~~il~~~~  494 (530)
                      ....+|++++.|...++...
T Consensus       304 ~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          304 ATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             TTCCSHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHH
Confidence            56789998887777777664

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.15  E-value=7.4e-05  Score=68.98  Aligned_cols=189  Identities=12%  Similarity=0.123  Sum_probs=142.6

Q ss_pred             HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-
Q 009622          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-  367 (530)
Q Consensus       289 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-  367 (530)
                      .+++.|.+++...+..++.-|..+...+......++..+++..|+.+.... +...+..+..++.++..+ .....-++ 
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs  199 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence            344556667788899999999997766788889999999999999999998 999999999999999875 34444444 


Q ss_pred             HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH--------HcC--ChHHHHhccC---CCChHHHHHHH
Q 009622          368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV--------IQG--CIKPLCDLLV---CPDPRIVTVCL  434 (530)
Q Consensus       368 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~~--~l~~L~~lL~---~~~~~v~~~al  434 (530)
                      ...+|..+..++.+.+..|.+.|+..|..++.... .....+.        ..|  -++.|+..|.   +.|.+++..++
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            45678888999888889999999999999987542 1111111        112  3778899997   78999999999


Q ss_pred             HHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCC--CHHHHHH
Q 009622          435 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEK  485 (530)
Q Consensus       435 ~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~  485 (530)
                      ..|..++...+....     -..+...+++.|.-..+...+...  ++++.++
T Consensus       279 tLIN~lL~~apd~d~-----~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDS-----FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHH-----HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhH-----HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            999999887653221     223677788888777788866655  6666443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.15  E-value=7.2e-05  Score=69.06  Aligned_cols=186  Identities=15%  Similarity=0.093  Sum_probs=138.2

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009622          246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       246 ~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~  325 (530)
                      ..++.-|.+.+.+.+..++..|..+...+.+....++..+++..|+......+...+..++.+++++..+.+.....+-.
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            34556666788888899999999866566677888999999999999999999999999999999999754443323335


Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------h--CcHHHHHHHHh---cCchhHHHHHHH
Q 009622          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--------A--NIIGPLVALLE---NAEFDIKKEAAW  392 (530)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~~  392 (530)
                      ...+..+..++.+. ...|.+.|..+|-.++..++.....+.+        .  ..+..|+.+|.   +.|.+++..|..
T Consensus       201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            67889999999976 8999999999999998765433333322        1  23778999997   678999999998


Q ss_pred             HHHHhhcCCC-HH----HHHHHHHcCChHHHHhccCCC--ChHHHHH
Q 009622          393 AISNATSGGT-HE----QIKFLVIQGCIKPLCDLLVCP--DPRIVTV  432 (530)
Q Consensus       393 aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~lL~~~--~~~v~~~  432 (530)
                      .|..+..+++ .+    ....+-+.|+=..+...++..  +++++..
T Consensus       280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            8887776554 23    333444556556667767654  6565553

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.13  E-value=0.00015  Score=80.18  Aligned_cols=251  Identities=10%  Similarity=0.104  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHH
Q 009622          133 LQFEAAWALTNIASGTS-EHTKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPL  206 (530)
Q Consensus       133 i~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~L  206 (530)
                      .|..+..+|..++.... .....+     ++.+-..+.+     .++..++.++++++.++........     ..++.+
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l  506 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRL  506 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHH
Confidence            45566667766665333 222222     2233333332     5788999999999999866543211     233334


Q ss_pred             HHhh---cC-CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009622          207 LAQL---NG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (530)
Q Consensus       207 l~ll---~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  282 (530)
                      +.++   .. +.++.++..++|+++.++..-.. .......+++.++..+ +  +.++..|++++.+++..........+
T Consensus       507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~  582 (971)
T 2x1g_F          507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA  582 (971)
T ss_dssp             HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH
Confidence            4332   11 34788999999999999875321 1245677888888888 2  78999999999999976554444333


Q ss_pred             HhCcHHHHHHhhCCC--CchhHHHHHHHHhHhhcCCc-hhhHHHhh---cCchHHHHHhhcCCC-chhHHHHHHHHHHHH
Q 009622          283 EAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDD-MQTQCVIE---YQALPCLLNLLSGNY-KKSIKKEACWTVSNI  355 (530)
Q Consensus       283 ~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~-~~~~~~~~---~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl  355 (530)
                      . .++..+..++..+  +...+..++.+++.++...+ ......+.   ..++..+..++.... ++..+.....++..+
T Consensus       583 ~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L  661 (971)
T 2x1g_F          583 D-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMI  661 (971)
T ss_dssp             H-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence            3 5777777888773  46788888999999876432 22222221   122333333333321 222334444444444


Q ss_pred             hc-----CC-----------HHHHHHHHHhCcHHHHHHHHhcC--chhHHHHHHHHHHHhhc
Q 009622          356 TA-----GN-----------REQIQAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATS  399 (530)
Q Consensus       356 ~~-----~~-----------~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~  399 (530)
                      +.     +.           ++....+ -..+++.+..++...  +..+.+.+++++..++.
T Consensus       662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          662 STLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            32     11           1111112 246788888887643  67999999999999765

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.10  E-value=1.8e-05  Score=86.58  Aligned_cols=303  Identities=11%  Similarity=0.030  Sum_probs=168.4

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCCh
Q 009622           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAV  161 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~~~~~g~i  161 (530)
                      +.++.+...++.++..+++-   -+...++..++++.+..++..   ++++..|+.||..+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            46788889999999999864   456667778889999998864   789999999999998854  3333333322011


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHhhhC------CCc-----hhhhh--HhhcCChHHHHHhhcCCCchhHHHHHHHHh
Q 009622          162 PIFVKLLY--SPSDDVREQAVWALGNIAG------DSP-----RCRDL--VLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (530)
Q Consensus       162 ~~L~~lL~--~~~~~~~~~a~~~L~nl~~------~~~-----~~~~~--i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L  226 (530)
                      ...+..+.  ..+.++.+..+..+..++.      ..+     +.+..  -.-.+.++.++.+. .+++.++...++.++
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            11222222  3566666555544433321      111     00000  01124677777887 566667777776666


Q ss_pred             hhhccCC---CC--CCh----hhhhchHHHHHHhhcCC-----Ch-----------hHHHHHHHHHHH-hccCChHHHHH
Q 009622          227 SNFCRGK---PQ--PPF----DQVSPALPALAHLIHSN-----DD-----------EVLTDACWALSY-LSDGTNDKIQA  280 (530)
Q Consensus       227 ~~L~~~~---~~--~~~----~~~~~~l~~L~~ll~~~-----d~-----------~v~~~a~~~l~~-l~~~~~~~~~~  280 (530)
                      ..+....   +.  ...    .....+++.++.-+.-+     +.           +.+.... .+.. ++.-.++..-.
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence            6655321   11  111    22233444444444321     11           2333333 2222 21112111111


Q ss_pred             -HHHhCcHHHHHHhhC---CCCchhHHHHHHHHhHhhcCCchhhHHH-----hhcCchHHHHHhhc-----CCCchhHHH
Q 009622          281 -VIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKK  346 (530)
Q Consensus       281 -~~~~~~i~~L~~lL~---~~~~~~~~~a~~~L~nl~~~~~~~~~~~-----~~~~~l~~L~~lL~-----~~~~~~v~~  346 (530)
                       +.+ -+.+.+...+.   +.+|..++.++.+++.++.+.......+     .-..+++.+..++.     .+ ++.|+.
T Consensus       436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~  513 (980)
T 3ibv_A          436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL  513 (980)
T ss_dssp             HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence             110 11122223342   3468899999999999998755322111     00124455555554     45 899999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc------CchhHHHHHHHHHHHhhcCCC
Q 009622          347 EACWTVSNITAGNREQIQAVIEANIIGPLVALLEN------AEFDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~nl~~~~~  402 (530)
                      .++|+++..+..-..      +...++.++..+-+      ++.+|+..|+.++.+++..+.
T Consensus       514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            999999999873221      12355555555444      567899999999999998654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.08  E-value=0.0005  Score=75.93  Aligned_cols=331  Identities=11%  Similarity=0.054  Sum_probs=175.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh--hhHHH---HHh--CCC
Q 009622           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS--EHTKV---VID--HGA  160 (530)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~--~~~~~---~~~--~g~  160 (530)
                      .+...++.++..++..+ ....   ....+++.+++++.  + ++++..|+.++..+.....  .....   ++.  .+.
T Consensus       217 ~~~~~~l~~l~~wi~~~-~~~~---~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~  289 (963)
T 2x19_B          217 CVRQKVLKCFSSWVQLE-VPLQ---DCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGL  289 (963)
T ss_dssp             HHHHHHHHHHHHHHTSS-CCGG---GTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCC-CCcc---cchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhh
Confidence            46667777776665432 2111   11345777777774  3 6789999999999988432  11111   111  111


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh-------hhhHhhcCChHHHHHhhcC----CCchhHHHHHHHHhhhh
Q 009622          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-------RDLVLSQGGLVPLLAQLNG----QPKLSMLRNATWTLSNF  229 (530)
Q Consensus       161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-------~~~i~~~~~i~~Ll~ll~~----~~~~~~~~~a~~~L~~L  229 (530)
                      .+.+...+...+.......+.++..++...+..       ...+  ...+..++.+...    ..+..+...++..+..+
T Consensus       290 ~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l  367 (963)
T 2x19_B          290 QEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTL  367 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHH
Confidence            222222233344555555556666654321110       0111  1234444444422    23455566666666666


Q ss_pred             ccCCCCC-------Ch----hhhhchHHHHHHhhcCCChh---------------HHHHHHHHHHHhccCCh-HHHHHHH
Q 009622          230 CRGKPQP-------PF----DQVSPALPALAHLIHSNDDE---------------VLTDACWALSYLSDGTN-DKIQAVI  282 (530)
Q Consensus       230 ~~~~~~~-------~~----~~~~~~l~~L~~ll~~~d~~---------------v~~~a~~~l~~l~~~~~-~~~~~~~  282 (530)
                      +......       ..    .....+++.++..+..++.+               .+..+..++..++.... ....   
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~---  444 (963)
T 2x19_B          368 QDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLS---  444 (963)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH---
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHH---
Confidence            5521110       01    12233444444444322211               12223333333331111 1111   


Q ss_pred             HhCcHHHHHHhh----CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhh---cCCCchhHHHHHHHHHHHH
Q 009622          283 EAGVFPRLAEFL----MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNI  355 (530)
Q Consensus       283 ~~~~i~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl  355 (530)
                        -+++.+...+    .+.+|..+..++++++.++.+.....     ...++.++..+   ..+ ++.+|..++|+++.+
T Consensus       445 --~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~  516 (963)
T 2x19_B          445 --NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGAL  516 (963)
T ss_dssp             --HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHH
Confidence              2233444445    56788999999999999998755321     12334444443   334 778999999999999


Q ss_pred             hcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC--CChHHHHHH
Q 009622          356 TAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVC  433 (530)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~v~~~a  433 (530)
                      +..-..... .+ ..+++.++..+.+  +.|+..|+++|.+++.........++  ..++..|..++..  -+.+.+..+
T Consensus       517 ~~~l~~~~~-~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~  590 (963)
T 2x19_B          517 SEWLADHPV-MI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWL  590 (963)
T ss_dssp             HHHHHHCHH-HH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHhCHH-HH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHH
Confidence            763222211 22 3688888888854  79999999999999864322111111  1234455555554  256788888


Q ss_pred             HHHHHHHHhhh
Q 009622          434 LEGLENILKVG  444 (530)
Q Consensus       434 l~~l~~ll~~~  444 (530)
                      ++++..++...
T Consensus       591 ~eai~~i~~~~  601 (963)
T 2x19_B          591 MQALGFLLSAL  601 (963)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHhcC
Confidence            99999988644

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.85  E-value=0.022  Score=63.36  Aligned_cols=316  Identities=10%  Similarity=0.119  Sum_probs=170.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCC--ch-
Q 009622          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDS--PR-  192 (530)
Q Consensus       117 ~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~--~~-  192 (530)
                      +++.+..++....++.++..++.++.+....-+  ...+.....++.++. ++  .++.++..|+.+|..+....  +. 
T Consensus       195 i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~  270 (1049)
T 3m1i_C          195 IFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDN  270 (1049)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcch
Confidence            344455556544447899999999998876333  223555667777763 44  37889999999999998552  21 


Q ss_pred             --hhhhHhh--cCChHHHHH-h----------h--cCCCchhHHHHHHHHhhhhccCC------CCCChhhhhchHHHHH
Q 009622          193 --CRDLVLS--QGGLVPLLA-Q----------L--NGQPKLSMLRNATWTLSNFCRGK------PQPPFDQVSPALPALA  249 (530)
Q Consensus       193 --~~~~i~~--~~~i~~Ll~-l----------l--~~~~~~~~~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~  249 (530)
                        ....+..  .+.+..+.. +          .  ..+.+.+.....+..+..+....      +.........+++.++
T Consensus       271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll  350 (1049)
T 3m1i_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence              1111110  111221111 1          1  02234555555555554433211      1111222345677777


Q ss_pred             HhhcCCChhHHHHHHHHHHHhcc----C--ChHHHHHHHHhCcHHHHHHhhCCCCc----------------------hh
Q 009622          250 HLIHSNDDEVLTDACWALSYLSD----G--TNDKIQAVIEAGVFPRLAEFLMHPSP----------------------SV  301 (530)
Q Consensus       250 ~ll~~~d~~v~~~a~~~l~~l~~----~--~~~~~~~~~~~~~i~~L~~lL~~~~~----------------------~~  301 (530)
                      .+...++.++...++.....++.    .  .......++. .+++.++..+..++.                      ..
T Consensus       351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~  429 (1049)
T 3m1i_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1049)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence            77777787887777766655554    1  1111121222 344555555432110                      12


Q ss_pred             HHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHh
Q 009622          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLE  380 (530)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  380 (530)
                      +..+..+|..++...+...-    .-+.+.+...+.. ..+...+..++|+++.++.+.......-.-..+++.|..+..
T Consensus       430 ~~~~~~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~  505 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV  505 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence            32344455555432221111    1123444455543 226788999999999998743222111111124455554432


Q ss_pred             -----cCchhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          381 -----NAEFDIKKEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       381 -----~~~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                           .+.+.++..++|+++.++..  ..+++..     .+++.|+..+.++++.++..|+.++.+++.....
T Consensus       506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                 13455666799999977642  1233322     3577788888888899999999999999986543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.76  E-value=0.0034  Score=68.85  Aligned_cols=390  Identities=8%  Similarity=0.054  Sum_probs=202.4

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009622           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~  160 (530)
                      .++..+..++++++.++.+. .+....-.-..+++.|+.++...    ....++..++|+++.++.--......+  ..+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~v  541 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV  541 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHH
Confidence            57889999999999887542 22212222234677888887631    113455567799988766221111111  134


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhh------cCChHHHHHhhc---CCCchhHHHHHHHHhhhhcc
Q 009622          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS------QGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~------~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..|+..+..+++.++..|+++|.+||.+   ++..+..      ...++.++..+.   ..-+..-...+..+++.+..
T Consensus       542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            66777777777889999999999999965   3333321      113344433331   33456666788888888888


Q ss_pred             CCCCCC--hhhhhchHHHHH----Hhhc--CC------C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009622          232 GKPQPP--FDQVSPALPALA----HLIH--SN------D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (530)
Q Consensus       232 ~~~~~~--~~~~~~~l~~L~----~ll~--~~------d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL  294 (530)
                      ..+...  ......+++.+.    .+..  +.      |   .......+.++..++..-......... .+.+.++.+.
T Consensus       619 ~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~y  697 (1023)
T 4hat_C          619 EERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNMLQLY  697 (1023)
T ss_dssp             TCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHH
T ss_pred             hCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHH
Confidence            754322  112222222222    2221  01      1   122333444444443221110000000 1122222221


Q ss_pred             CC------------C-----Cc------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC----C----Cchh
Q 009622          295 MH------------P-----SP------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG----N----YKKS  343 (530)
Q Consensus       295 ~~------------~-----~~------~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~----~~~~  343 (530)
                      +.            +     .+      .++..+++.+.......+..  ..+...+++.|+..+-.    .    .++.
T Consensus       698 ~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~--~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~  775 (1023)
T 4hat_C          698 RAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL--DDVVKVLVEPLLNAVLEDYMNNVPDARDAE  775 (1023)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH--HHHHHHTHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred             HHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHhHHHHHHHHHHHHHhCChhhccHH
Confidence            10            0     01      12223333333333222111  11223345555444321    1    1344


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCC-------HHHHHHHHHcC
Q 009622          344 IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA---EFDIKKEAAWAISNATSGGT-------HEQIKFLVIQG  413 (530)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~-------~~~~~~l~~~~  413 (530)
                      +-.-..-++..+.....+.+..+++ .++..-+.++..+   .|+.|..-...+..+..++-       ++..+.     
T Consensus       776 vL~l~s~iv~~~~~~~~~~~~~il~-~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~-----  849 (1023)
T 4hat_C          776 VLNCMTTVVEKVGHMIPQGVILILQ-SVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL-----  849 (1023)
T ss_dssp             HHHHHHHHHHHHGGGCHHHHHHHHH-HHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH-----
Confidence            5444445555554433444444444 3555666677653   58888888888877766542       222222     


Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHH----HHhcCCCHHHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE----SLQTHDNAEIYEKSVKL  489 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~l~~~~~~~v~~~a~~i  489 (530)
                      +++.++-.++.++.++...++..+..++.......      ...+...|-..-+.+.+.    .+.+....-..+.-..+
T Consensus       850 ~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~  923 (1023)
T 4hat_C          850 FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALL  923 (1023)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHH
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHH
Confidence            45556667788999999999999999987665321      112344444444454443    44667777777777788


Q ss_pred             HHHhCC
Q 009622          490 LETYWL  495 (530)
Q Consensus       490 l~~~~~  495 (530)
                      +...|.
T Consensus       924 l~~l~~  929 (1023)
T 4hat_C          924 LMKLIS  929 (1023)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877665

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.70  E-value=0.0099  Score=65.12  Aligned_cols=301  Identities=12%  Similarity=0.100  Sum_probs=161.9

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHh--CC
Q 009622           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF-VEFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVID--HG  159 (530)
Q Consensus        84 s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~L-v~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~--~g  159 (530)
                      +.++++...++.+++.+++-   -++..+++.++++.+ ..+|.  + +.++..|+.||..+.... ++....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            45677777888999988765   346677888888888 46663  4 789999999999998743 222222211  12


Q ss_pred             ChHHHHHhhC-------------CCCHHHHHHHHHHHHhhhCC-------CchhhhhHhhcCChHHHHHhhcCCCchhHH
Q 009622          160 AVPIFVKLLY-------------SPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQPKLSML  219 (530)
Q Consensus       160 ~i~~L~~lL~-------------~~~~~~~~~a~~~L~nl~~~-------~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~  219 (530)
                      ++..+..++.             ..+.+.....+.++..+...       .|..+..+..  ++..++.+. ..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence            2222222221             12234444444555444321       1111111111  233344433 56788888


Q ss_pred             HHHHHHhhhhccC----CC-----CC------------ChhhhhchHHHHHH----hhcCCC------------------
Q 009622          220 RNATWTLSNFCRG----KP-----QP------------PFDQVSPALPALAH----LIHSND------------------  256 (530)
Q Consensus       220 ~~a~~~L~~L~~~----~~-----~~------------~~~~~~~~l~~L~~----ll~~~d------------------  256 (530)
                      +.+......|...    .+     .+            ......+++..|..    -+..++                  
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~  448 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK  448 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence            8887776666432    11     00            01112333333333    222111                  


Q ss_pred             --h-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcC
Q 009622          257 --D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ  327 (530)
Q Consensus       257 --~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~  327 (530)
                        .     +...+++..+.++.  .++....     .++.+.+.+..  .+|.....++|++|.++..-......-.-..
T Consensus       449 d~~~~~ly~~mrd~L~~lt~l~--~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~  521 (1073)
T 3gjx_A          449 DTDSINLYKNMRETLVYLTHLD--YVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT  521 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHC--HHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHhcCC--HHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence              0     12222333333222  1222221     23444444443  3688999999999999854332222122234


Q ss_pred             chHHHHHhhcCCC----chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009622          328 ALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  402 (530)
Q Consensus       328 ~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~  402 (530)
                      +++.|+.+..+..    ...++...+|++|..+.--..+...+  ..++..|++.+...++.|+..|+.|+..++..+.
T Consensus       522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~  598 (1073)
T 3gjx_A          522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR  598 (1073)
T ss_dssp             HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            6667776665431    23456667899999876322222222  1356677888888889999999999999987553

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.67  E-value=0.00034  Score=68.49  Aligned_cols=258  Identities=12%  Similarity=0.059  Sum_probs=155.8

Q ss_pred             hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        71 ~~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      .++....++..|-++.+++|.-|+-.||.++...+..       .|..       ...+ .   ..|+++++-++-+.  
T Consensus       172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~-------~~~N-~---DLAvRLLCVLALDR--  231 (800)
T 3oc3_A          172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ-------IRVD-S---KLFSKIYEILVTDK--  231 (800)
T ss_dssp             GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC--
T ss_pred             HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee-------cccc-H---HHHHHHHHHHHhcc--
Confidence            3446688888999999999999999999998764210       1111       1122 1   44555555544421  


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                                   +-.+.++ .-..+|+.|+.+|+.+ ..-+.-      ..++..++..+ ....-+++..++-.|.++
T Consensus       232 -------------FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL  290 (800)
T 3oc3_A          232 -------------FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL  290 (800)
T ss_dssp             -------------CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT
T ss_pred             -------------ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH
Confidence                         1111222 1235788888888887 554432      23445555444 555677888888888877


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC--chhHHHHHH
Q 009622          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--PSVLIPALR  307 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~~~~~a~~  307 (530)
                      ..--.     ...++++.++..|.+.|++|+.-|+.+|..++ . ++...     .++..+...|.+-+  ..-....+.
T Consensus       291 ~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMd  358 (800)
T 3oc3_A          291 KEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLS  358 (800)
T ss_dssp             GGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHH
T ss_pred             HHHHH-----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHH
Confidence            11101     15777888888888888889888888888887 2 22233     23344444444321  223344455


Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      .|+.++......   -.....+|.|.+.+.+. -..||..+..++..+.  .....+.+.        -.++-..+.+++
T Consensus       359 LLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl  424 (800)
T 3oc3_A          359 LLTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIR  424 (800)
T ss_dssp             HHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHH
T ss_pred             HHHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHH
Confidence            666666544321   11237889999999998 8999999999887776  222222222        234555677788


Q ss_pred             HHHHHHHH
Q 009622          388 KEAAWAIS  395 (530)
Q Consensus       388 ~~a~~aL~  395 (530)
                      ..+..+..
T Consensus       425 ~lS~~VWk  432 (800)
T 3oc3_A          425 EMAIKLLK  432 (800)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776664

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0019  Score=59.85  Aligned_cols=193  Identities=11%  Similarity=0.079  Sum_probs=126.3

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHH-HHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009622           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE-EVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (530)
Q Consensus        72 ~~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~-~~~--~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~  148 (530)
                      +..+| +-+.|.|.++..|..|+..+.+++......... ...  -....+.+-..+.+.+ ..++..++.++..++...
T Consensus         9 ~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~   86 (278)
T 4ffb_C            9 YTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAF   86 (278)
T ss_dssp             --CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC
T ss_pred             hhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHh
Confidence            34555 668899999999999999999988653211111 111  1234566677887777 899999999999887632


Q ss_pred             h-----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009622          149 S-----EHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (530)
Q Consensus       149 ~-----~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a  222 (530)
                      .     .......-..+++.|+. .+.+....++..+..++..++...... ..     ++..++..+ .+.++.++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~  159 (278)
T 4ffb_C           87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAA  159 (278)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHH
T ss_pred             hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHH
Confidence            1     11111112345677775 477788889999988887776332211 11     244555666 77888998888


Q ss_pred             HHHhhhhccCCC--CCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009622          223 TWTLSNFCRGKP--QPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       223 ~~~L~~L~~~~~--~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (530)
                      +..|..+.....  ... ......+++.+..++.+.|+.|+..+..++..+-..
T Consensus       160 l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          160 ANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            888887765421  111 223455677788889999999999999998777543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.49  E-value=0.0032  Score=68.92  Aligned_cols=307  Identities=10%  Similarity=-0.010  Sum_probs=166.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch--hhhhHhhcCChHH
Q 009622          128 EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CRDLVLSQGGLVP  205 (530)
Q Consensus       128 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--~~~~i~~~~~i~~  205 (530)
                      .+ +.+...++.+|......-  ....+++.+.++.+.++|..  ++++..|+.+|..+......  .+..++..=.+..
T Consensus       205 ~~-~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KN-YGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TC-HHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            55 889999999999998832  23456666788888888864  78999999999999854432  2222222101122


Q ss_pred             HHHhhcC-CCchhHHHHHHHHhhhhc------cCCCC-CC-------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 009622          206 LLAQLNG-QPKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (530)
Q Consensus       206 Ll~ll~~-~~~~~~~~~a~~~L~~L~------~~~~~-~~-------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l  270 (530)
                      .+..+.. ..|.+..+..+..+..++      ...+. ..       .....++++.++.++.+++.++...++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            2222212 456666554444443221      11121 11       134467889999999888888877665554443


Q ss_pred             ccC-----C----hHHHHHHHHhCcHHHHHHhhCCCC---c-------------hhHHHHHHHHhHhhcCCchhhHHHhh
Q 009622          271 SDG-----T----NDKIQAVIEAGVFPRLAEFLMHPS---P-------------SVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       271 ~~~-----~----~~~~~~~~~~~~i~~L~~lL~~~~---~-------------~~~~~a~~~L~nl~~~~~~~~~~~~~  325 (530)
                      ...     .    ......++. .+++.++..+..++   +             ..|....-.+..++.-.+......+-
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            311     0    111121221 34444554444321   0             12333221122222111111111000


Q ss_pred             cCchHHHHHhhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H----hCcHHHHHHHHh-----cCchhHHHHHHH
Q 009622          326 YQALPCLLNLLS---GNYKKSIKKEACWTVSNITAGNREQIQAVI-E----ANIIGPLVALLE-----NAEFDIKKEAAW  392 (530)
Q Consensus       326 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~----~~~i~~L~~ll~-----~~~~~v~~~a~~  392 (530)
                      .-+.+.+...+.   +. +...++.+..+++.++.+......... .    ..+++.|..++.     .+++.|+..+++
T Consensus       439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME  517 (980)
T ss_dssp             HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            012222333332   22 567788999999999875332111100 0    014455666655     567999999999


Q ss_pred             HHHHhhcCC--CHHHHHHHHHcCChHHHHh--ccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          393 AISNATSGG--THEQIKFLVIQGCIKPLCD--LLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       393 aL~nl~~~~--~~~~~~~l~~~~~l~~L~~--lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      +++..+..-  .++...     .++..+++  .+.++++.++..|..++.++++....
T Consensus       518 ~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          518 ILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            999987632  122222     23555555  55567888999999999999987654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0042  Score=57.45  Aligned_cols=189  Identities=11%  Similarity=0.122  Sum_probs=125.9

Q ss_pred             HHHhhCCCCchhHHHHHHHHhHhhcCCchhh--HHHh--hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-H----
Q 009622          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQT--QCVI--EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-R----  360 (530)
Q Consensus       290 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~----  360 (530)
                      +-+-|.+.+|..|..|+..+..+....+...  ....  -....+.+...+.+. +..+...++.++..++... .    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            5677899999999999999988876443221  1111  123566677788777 8999999999999887521 1    


Q ss_pred             HHHHHHHHhCcHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHH
Q 009622          361 EQIQAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN  439 (530)
Q Consensus       361 ~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~  439 (530)
                      .......-..+++.|++- +.+....++..|..++..++....+..       .+++.+...+++.+|+++..++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            111111223467777764 666778899999988888775432110       135677888999999999999999999


Q ss_pred             HHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          440 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       440 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ++.......      .+ ....+  ...+..+..+..+.|++|++.|..++-.+|-
T Consensus       166 ~l~~fg~~~------~~-~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          166 LMAAFGLTN------VN-VQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHTTTT------CC-HHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCc------CC-chhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            886532110      00 11111  1224566778899999999999999877654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.34  E-value=0.02  Score=52.56  Aligned_cols=293  Identities=17%  Similarity=0.192  Sum_probs=176.5

Q ss_pred             HHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc-CCChhHHH
Q 009622          183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLT  261 (530)
Q Consensus       183 L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~  261 (530)
                      |.++..+.+...+-++..+++..+...+ +.++.++.++.+..|...+... ..........+|.++..+. +++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence            3444455555566677788888888888 7888999999999999888764 2223334677888888776 67899999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-------Cch-------hHHHHHHHHhHhhc-------------
Q 009622          262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-------SPS-------VLIPALRTVGNIVT-------------  314 (530)
Q Consensus       262 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~-------~~~~a~~~L~nl~~-------------  314 (530)
                      .....|+|...+........+..+.+..|...+...       +..       +...+++++.|...             
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            999999999988887778888889999998876542       222       34445555555531             


Q ss_pred             CCc--hhhHHHhhcCchHHHHHhhcCCC-c----hhHHHHHHHHHHHHhcCC---HHHH----HHHHHhCcHHHHHHHHh
Q 009622          315 GDD--MQTQCVIEYQALPCLLNLLSGNY-K----KSIKKEACWTVSNITAGN---REQI----QAVIEANIIGPLVALLE  380 (530)
Q Consensus       315 ~~~--~~~~~~~~~~~l~~L~~lL~~~~-~----~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~i~~L~~ll~  380 (530)
                      |..  .+...+++..+++.|+.+|+-+. +    -++|.......--+....   .+..    +.+-..+++-.++-.+.
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s  503 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS  503 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence            111  22334566788899999987642 1    244554444433333311   0100    01112233333333221


Q ss_pred             c-----Cc-------hhHHHHHHHHHHHhhcCC-CHHHH-HHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHhhh
Q 009622          381 N-----AE-------FDIKKEAAWAISNATSGG-THEQI-KFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       381 ~-----~~-------~~v~~~a~~aL~nl~~~~-~~~~~-~~l~~~~~l~~L~~lL~~~--~~~v~~~al~~l~~ll~~~  444 (530)
                      .     .+       ..+.+.+...|..+...+ ..++. .++   ..++.=.++|+++  .|.....++..-.++++++
T Consensus       504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHc  580 (619)
T 3c2g_A          504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHC  580 (619)
T ss_dssp             HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHHHHHHHHHhC
Confidence            0     11       123344445555554432 32221 111   1133334566544  5677778888888888877


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      +....           .-.  -.-..++-+.+|.|+++...|..++.+|
T Consensus       581 P~~Ad-----------~W~--i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          581 PTRAD-----------IWT--IDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             TTHHH-----------HSC--CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             cchhc-----------cce--echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            65321           100  0124567789999999999999999876

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.32  E-value=0.0038  Score=56.38  Aligned_cols=181  Identities=14%  Similarity=0.091  Sum_probs=117.8

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC----CchhhHH
Q 009622          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQC  322 (530)
Q Consensus       247 ~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~----~~~~~~~  322 (530)
                      .+...+.+.|..-...++..|.......++.....++ .+++.+.-.+.+.+..+...++.+|..+...    .......
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            3455555666666666666665544333322211111 1233333234467888888888888776431    1111111


Q ss_pred             HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009622          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  401 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  401 (530)
                      . -.-++|.|+.-+-++ ...+|..+-.++..++. ..+.        .+++.+++-+.+.++++|.+++..+..+....
T Consensus       129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            0 124689999999888 88899888887776654 2222        36677888888899999999999999987622


Q ss_pred             CHHHHHHHHHcCCh---HHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          402 THEQIKFLVIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       402 ~~~~~~~l~~~~~l---~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                      ...      ....+   +.+..++.+.|..|+..|+.++..+....
T Consensus       199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            111      23468   99999999999999999999998877543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.31  E-value=0.055  Score=59.31  Aligned_cols=310  Identities=12%  Similarity=0.142  Sum_probs=165.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHhhhCCC-chhhh
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGDS-PRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~  195 (530)
                      ++.+..++....++.+...++.+|+.+.+--  ....+++.+.++.+ ..+|  .+++++..|+.+|..+.+.. +.+.+
T Consensus       208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~  283 (1073)
T 3gjx_A          208 FQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE  283 (1073)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence            3334444544444888888999999988743  34567788888888 4666  46789999999999988542 22222


Q ss_pred             hHhh--cCChHHHHHhh------------cCCCchhHHHHHHHHhhhhccCCC-----CCC-hhhhhchHHHHHHhhcCC
Q 009622          196 LVLS--QGGLVPLLAQL------------NGQPKLSMLRNATWTLSNFCRGKP-----QPP-FDQVSPALPALAHLIHSN  255 (530)
Q Consensus       196 ~i~~--~~~i~~Ll~ll------------~~~~~~~~~~~a~~~L~~L~~~~~-----~~~-~~~~~~~l~~L~~ll~~~  255 (530)
                      .+..  ...+..+-.++            ....+.+.....+.++..+....-     .+. ......++..++.+...+
T Consensus       284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~  363 (1073)
T 3gjx_A          284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE  363 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence            2211  01111111111            123355667777777766554321     001 112223344455555667


Q ss_pred             ChhHHHHHHHHH----HHhccCC------------------hHHHHHHHH---hCcHHHHHHhhCCCCc-----------
Q 009622          256 DDEVLTDACWAL----SYLSDGT------------------NDKIQAVIE---AGVFPRLAEFLMHPSP-----------  299 (530)
Q Consensus       256 d~~v~~~a~~~l----~~l~~~~------------------~~~~~~~~~---~~~i~~L~~lL~~~~~-----------  299 (530)
                      |.++...++..=    ..+....                  ... ..+..   ..+...++..+..+++           
T Consensus       364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~  442 (1073)
T 3gjx_A          364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV  442 (1073)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence            777765543321    2222110                  011 11111   1222333333333211           


Q ss_pred             --------------hhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcC-CHH-H
Q 009622          300 --------------SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAG-NRE-Q  362 (530)
Q Consensus       300 --------------~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~-~  362 (530)
                                    .....++..+.++.   ...+..    -+++.+...+..+ .+......+||+++.++.. .++ .
T Consensus       443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~---~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E  515 (1073)
T 3gjx_A          443 VREFMKDTDSINLYKNMRETLVYLTHLD---YVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE  515 (1073)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHHHHHHC---HHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHhcCC---HHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccc
Confidence                          01122222222221   111111    1234444444432 2578899999999999763 322 2


Q ss_pred             HHHHHHhCcHHHHHHHHhcC---c--hhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHH
Q 009622          363 IQAVIEANIIGPLVALLENA---E--FDIKKEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE  435 (530)
Q Consensus       363 ~~~l~~~~~i~~L~~ll~~~---~--~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~  435 (530)
                      ...+.  .+++.|+.+....   +  ..++...+|+++.....  ..++..+.     ++..|...+...++.++..|+.
T Consensus       516 ~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~  588 (1073)
T 3gjx_A          516 KRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACD  588 (1073)
T ss_dssp             HHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHH
T ss_pred             cchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHH
Confidence            22233  3677777776554   2  34566667888776542  12333333     5677778888889999999999


Q ss_pred             HHHHHHhhhhh
Q 009622          436 GLENILKVGEA  446 (530)
Q Consensus       436 ~l~~ll~~~~~  446 (530)
                      ++..++..+..
T Consensus       589 af~~i~~~C~~  599 (1073)
T 3gjx_A          589 TFIKIAQKCRR  599 (1073)
T ss_dssp             HHHHHHHHTGG
T ss_pred             HHHHHHHHHHH
Confidence            99999887754

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.20  E-value=0.009  Score=53.95  Aligned_cols=177  Identities=16%  Similarity=0.105  Sum_probs=115.0

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhc----cCCCC
Q 009622          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC----RGKPQ  235 (530)
Q Consensus       163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~----~~~~~  235 (530)
                      .+...+-+.+..-+..++..|.......+.   .+..  .+..+++.+.   .+++..+...++.+|..+.    .....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            344455555666666666666554433221   1111  2222333221   3557777777777766653    32233


Q ss_pred             CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC
Q 009622          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (530)
Q Consensus       236 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~  315 (530)
                      ........++|.|+.-+.+..+.++..+-.++..+....+       -..+++.++.-+.+.++..+..++..++.+...
T Consensus       125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            3344457789999999988888888887777655542111       124567788889999999999999999998753


Q ss_pred             CchhhHHHhhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          316 DDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       316 ~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ....     ....+   +.+..++.+. +..||..|..++..+-.
T Consensus       198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            3222     23467   9999999998 99999999999987755

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.18  E-value=0.062  Score=49.61  Aligned_cols=202  Identities=13%  Similarity=0.090  Sum_probs=148.5

Q ss_pred             HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCch----hhHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM----QTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       279 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      +.+...+++..|+..|..-+.+.+..+..+++++......    ....+.. ..++..|+.-..   ++++--.+...|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence            4466779999999999999999999999999999875432    2233332 233333333333   4455555555555


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhccCCCChHHH
Q 009622          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---GCIKPLCDLLVCPDPRIV  430 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~l~~L~~lL~~~~~~v~  430 (530)
                      -++.+ ......++..+.+..+.+.++.++.+|...|..++..+..... ..+..++..   .+...+..+|.+++.-++
T Consensus       149 ecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk  226 (341)
T 1upk_A          149 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTK  226 (341)
T ss_dssp             HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence            55444 5667778888888899999999999999999999999887643 333333433   346778889999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      ..++..|+.++-.-....        .....+.+..-+..+..|..++...|+-.|..+..=|
T Consensus       227 RQSlKLLgelLldr~N~~--------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvF  281 (341)
T 1upk_A          227 RQSLKLLGELLLDRHNFT--------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF  281 (341)
T ss_dssp             HHHHHHHHHHHHSGGGHH--------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchHHH--------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeee
Confidence            999999999997655432        2366677777888999999999999999998887643

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.11  E-value=0.024  Score=52.34  Aligned_cols=201  Identities=15%  Similarity=0.153  Sum_probs=138.1

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      .+...+.+..|+..|..-+.+.+..+..++.++.......+    +.+..  -...+..++....++++.-.+-..|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            34456788889999988889999999999999987654322    22222  1222222332334555555555556555


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCCchhHHHHH
Q 009622          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPAL  306 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~~~~~a~  306 (530)
                      ++...........+.+-.+...+..++=++..+|..++..+..........++..   .++...-.+|.+++.-++..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            5553333333334455566777778888899999999988876655544445543   3567788899999999999999


Q ss_pred             HHHhHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          307 RTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       307 ~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ..||.+......   ...++-+..-+..++.+|++. +..++.+|..+.--+.+
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999999864221   222333556789999999999 99999999998887776

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.92  E-value=0.13  Score=45.37  Aligned_cols=187  Identities=12%  Similarity=0.121  Sum_probs=124.1

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------hCCCCc-----hhHHHHHHHHhHhhcCCchhhHH
Q 009622          256 DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVFPRLAEF-------LMHPSP-----SVLIPALRTVGNIVTGDDMQTQC  322 (530)
Q Consensus       256 d~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~l-------L~~~~~-----~~~~~a~~~L~nl~~~~~~~~~~  322 (530)
                      +++.++.|+.-|+.=-+..++....+.. .|.+..|++=       +..+.-     .-...|+..+-.+++ +++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            4455677666665543333333333332 2444444322       222221     123455556666665 5666678


Q ss_pred             HhhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      ++++++.-.|.++|....    -+.+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.|.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            889999888888887652    24688899999999987 7889999999999999999999999999999999999998


Q ss_pred             hcCCCHHHHHHHHHc--------CChHHHH-hccCCCChHHHHHHHHHHHHHHhhhh
Q 009622          398 TSGGTHEQIKFLVIQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       398 ~~~~~~~~~~~l~~~--------~~l~~L~-~lL~~~~~~v~~~al~~l~~ll~~~~  445 (530)
                      ..  +.....+++..        .++..++ .+.+.+++.+...++.+..++.....
T Consensus       173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence            87  33444444321        2233333 34467788888888888888775543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.78  E-value=0.083  Score=51.17  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHH
Q 009622          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH  250 (530)
Q Consensus       171 ~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~  250 (530)
                      .+...+..|+..|.....+-|...+.     ++..+++++ .+.+..++..|+..|..+|.+      .....+...|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            56889999999999999888887666     688899999 888999999999999999987      236778889999


Q ss_pred             hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcC-CchhhHHHhhcCch
Q 009622          251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG-DDMQTQCVIEYQAL  329 (530)
Q Consensus       251 ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~l  329 (530)
                      +|.++++.-...+-++|..+...++.        +.+..+...+.++++.+|..++..|..-... .......-++.-++
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            99998877666666677666554432        2233344444446788999888888554432 11111122233445


Q ss_pred             HHHHHhhcCC
Q 009622          330 PCLLNLLSGN  339 (530)
Q Consensus       330 ~~L~~lL~~~  339 (530)
                      ..+.++|.+-
T Consensus       180 ~~ikK~L~DV  189 (507)
T 3u0r_A          180 TESKKVLEDV  189 (507)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHhccc
Confidence            5666666443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.52  E-value=0.22  Score=45.80  Aligned_cols=179  Identities=15%  Similarity=0.155  Sum_probs=122.4

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCC
Q 009622          261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY  340 (530)
Q Consensus       261 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~  340 (530)
                      ..+...| ++.-++...+.-+++.+++..+...++..+..+....+..|-..+.... ... .--...+|.++..+.-..
T Consensus       261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~-t~L~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAK-TPLENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGT-SCCTTHHHHHHHHHHHCC
T ss_pred             HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhh-ccccccchHHHHHhccCC
Confidence            3333334 3444556678889999999999999999999999999999988764322 110 112357888888886444


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-------chhHHHHHHHHHHH-------hhc------C
Q 009622          341 KKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-------EFDIKKEAAWAISN-------ATS------G  400 (530)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~n-------l~~------~  400 (530)
                      +.++.......|+|..++........+..|.++.|...+...       +..-++.||..++|       +..      +
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N  417 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN  417 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence            889999999999999999888888888999999999987532       23345555555554       431      1


Q ss_pred             C--------CHHHHHHHHHcCChHHHHhccCCCCh------HHHHHHHHHHHHHHh
Q 009622          401 G--------THEQIKFLVIQGCIKPLCDLLVCPDP------RIVTVCLEGLENILK  442 (530)
Q Consensus       401 ~--------~~~~~~~l~~~~~l~~L~~lL~~~~~------~v~~~al~~l~~ll~  442 (530)
                      |        ...+...+++.++++.|..+|+.+.-      +++..++..+..++.
T Consensus       418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR  473 (619)
T 3c2g_A          418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR  473 (619)
T ss_dssp             SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred             CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence            1        23455566777889999999874421      355555555444443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.28  E-value=0.0035  Score=56.26  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=28.1

Q ss_pred             HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009622          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                      +.|..++.+++|.++..+...++                  .+.|..+ .++ ++.||..+...|
T Consensus       197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L  241 (244)
T 1lrv_A          197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence            44666677777777777776643                  2344444 555 778887766443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.28  E-value=0.0051  Score=55.16  Aligned_cols=140  Identities=17%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhh
Q 009622          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (530)
Q Consensus       163 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  242 (530)
                      .|..++.++++.++..++..+       +           ...+..++ ++++..++..+...+   .            
T Consensus       102 ~L~~ll~D~d~~VR~~aA~~l-------~-----------~~~L~~L~-~D~d~~VR~~aA~~l---~------------  147 (244)
T 1lrv_A          102 QLSALMFDEDREVRITVADRL-------P-----------LEQLEQMA-ADRDYLVRAYVVQRI---P------------  147 (244)
T ss_dssp             GGGGTTTCSCHHHHHHHHHHS-------C-----------TGGGGGGT-TCSSHHHHHHHHHHS---C------------
T ss_pred             HHHHHHcCCCHHHHHHHHHhC-------C-----------HHHHHHHH-cCCCHHHHHHHHHhc---C------------
Confidence            455556666666666665532       0           01223333 666677777666521   0            


Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHH
Q 009622          243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC  322 (530)
Q Consensus       243 ~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~  322 (530)
                        .+.+..++.++++.|+..++..   +.               -+.+..++.++++.++..++..+             
T Consensus       148 --~~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l-------------  194 (244)
T 1lrv_A          148 --PGRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL-------------  194 (244)
T ss_dssp             --GGGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC-------------
T ss_pred             --HHHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC-------------
Confidence              0123345556677777766553   11               12344566777777887777542             


Q ss_pred             HhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009622          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                           ..+.|..++.++ +..||..++..++                  .+.|..+ .++++.|+..+...|
T Consensus       195 -----~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 -----RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             -----CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             -----CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                 124566667777 8888888777643                  2344444 777888888876554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.24  E-value=0.2  Score=43.84  Aligned_cols=144  Identities=15%  Similarity=0.046  Sum_probs=104.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhC-CCchhhh
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCRD  195 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~  195 (530)
                      ++....+.+++. .++|..|+..|+.+ ....         ..++.+.. +...++..+++.+..+++.++. ..++   
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            455556666666 79999999998887 3111         23566666 5556889999999999999984 3332   


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                           ..++.+...+ .+++..+++.|+..+.-.+.. + ........++|.|..+..+++.-|+..+.|.|..++...+
T Consensus       139 -----~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          139 -----KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             -----TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             -----HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                 1456666666 889999999999988665543 2 1223335577888888888889999999999999999988


Q ss_pred             HHHHHHHH
Q 009622          276 DKIQAVIE  283 (530)
Q Consensus       276 ~~~~~~~~  283 (530)
                      +.+..+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.21  E-value=0.008  Score=59.08  Aligned_cols=160  Identities=19%  Similarity=0.141  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh
Q 009622          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL  210 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll  210 (530)
                      ..+|+.|+.+|+.+ ..-++.      ..++..++..+..+.++++..++-.|..+   .+ .-..  -.++++.++..|
T Consensus       242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~D-LL~~--Ld~Vv~aVL~GL  308 (800)
T 3oc3_A          242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KE-FVED--KDGLCRKLVSLL  308 (800)
T ss_dssp             CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GG-GCCC--HHHHHHHHHHHT
T ss_pred             eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HH-HHHH--HHHHHHHHHhhc
Confidence            46899999999998 533332      34455555556778899999999999887   11 1111  133566777777


Q ss_pred             cCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009622          211 NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (530)
Q Consensus       211 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  288 (530)
                       .+.+.+++..|+.+|.-++  .    ......++..+-..|.+.|+  .-...++..|+.++..+..   .......+|
T Consensus       309 -~D~DDDVRAVAAetLiPIA--~----p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVP  378 (800)
T 3oc3_A          309 -SSPDEDIKLLSAELLCHFP--I----TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLK  378 (800)
T ss_dssp             -TCSSHHHHHHHHHHHTTSC--C----SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGG
T ss_pred             -CCcccHHHHHHHHHhhhhc--c----hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHH
Confidence             7788999999999999888  1    13345666666666654321  1223344455555433321   011237899


Q ss_pred             HHHHhhCCCCchhHHHHHHHHhHhh
Q 009622          289 RLAEFLMHPSPSVLIPALRTVGNIV  313 (530)
Q Consensus       289 ~L~~lL~~~~~~~~~~a~~~L~nl~  313 (530)
                      +|.+++.+.-.+||..++.++..+.
T Consensus       379 RL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          379 DIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             GTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             HHHhhhcCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999998877

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.05  E-value=0.14  Score=44.89  Aligned_cols=142  Identities=13%  Similarity=0.085  Sum_probs=102.4

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhc-CCchh
Q 009622          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVT-GDDMQ  319 (530)
Q Consensus       242 ~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~-~~~~~  319 (530)
                      ..+++....+..++..+++..++..|+.+ ....         .+++.+.. +...+++.++..+..+++.++. ..++ 
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            44556666667777789999999988887 3111         34566666 5667889999999999999985 3332 


Q ss_pred             hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-----CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHH
Q 009622          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-----NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAI  394 (530)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  394 (530)
                             ..++.+..+..++ ++.+|+.|...+.-.+..     +++        -+++.|-.+..+++.-||+.+.|+|
T Consensus       139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~--------~ll~iL~~L~~D~s~yVrKSVan~L  202 (240)
T 3l9t_A          139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPN--------EAIRRIADLKEDVSEYVRKSVGNAL  202 (240)
T ss_dssp             -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHH--------HHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHH--------HHHHHHHHhcCChHHHHHHHHHHHH
Confidence                   2577888999999 999999888776443321     221        2456666677777899999999999


Q ss_pred             HHhhcCCCHHHHHHHHH
Q 009622          395 SNATSGGTHEQIKFLVI  411 (530)
Q Consensus       395 ~nl~~~~~~~~~~~l~~  411 (530)
                      ..++.. +|+....+++
T Consensus       203 rD~SK~-~Pd~V~~~~~  218 (240)
T 3l9t_A          203 RDISKK-FPDLVKIELK  218 (240)
T ss_dssp             HHHHTT-CHHHHHHHHH
T ss_pred             HHHhhh-CHHHHHHHHH
Confidence            999987 5666555443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.00  E-value=0.17  Score=44.72  Aligned_cols=141  Identities=12%  Similarity=0.158  Sum_probs=106.5

Q ss_pred             HHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CChhhHHHHHhCCChHHHH
Q 009622           91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIAS-GTSEHTKVVIDHGAVPIFV  165 (530)
Q Consensus        91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~----~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~  165 (530)
                      ..|+..|..+++.  ++....+++..+.-.|..+|+..+    ...+|..++.+++.++. ++++....+.+.+++|..+
T Consensus        74 cnaLaLlQcvAsh--petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           74 CNALALLQCVASH--PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHHC--TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHcC--cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            4566666777765  677888888887777788887654    34688899999999887 4577777888999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHh-------hcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-------SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       166 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~-------~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      +.++.+++-.+..|..++..|..+.......+.       -..++..++..+...+++.+.+.+++|-..|+.+.
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            999999999999999999998866654332211       11234445555556778899999999999998874

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.98  E-value=0.79  Score=51.47  Aligned_cols=301  Identities=9%  Similarity=0.044  Sum_probs=169.1

Q ss_pred             CHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC---
Q 009622           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG---  147 (530)
Q Consensus        74 ~l~~l~~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~-~~~~~~i~~~a~~~L~~l~~~---  147 (530)
                      .+..++..+.++  +++.+.+|-..|.++-..  .+         ....+...|. .+.++.+|..|+..|.+....   
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~   80 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN   80 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence            355566555554  667788888888776432  11         2333444333 333489999999999987653   


Q ss_pred             --ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHH
Q 009622          148 --TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (530)
Q Consensus       148 --~~~~~~~~~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a  222 (530)
                        +++.+..+ ...++..+......   .+..++...+.+++.|+...-..+    -.++++.++.++..  +......+
T Consensus        81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~--~~~~~e~~  153 (1204)
T 3a6p_A           81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ--GETQTELV  153 (1204)
T ss_dssp             GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT--CHHHHHHH
T ss_pred             cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC--CHHHHHHH
Confidence              23333333 33344444433211   457889999999999874321111    12467777877733  44557778


Q ss_pred             HHHhhhhccCC---CCCChhh-----------hhchHHHHHHhhcC-------------------CChhHHHHHHHHHHH
Q 009622          223 TWTLSNFCRGK---PQPPFDQ-----------VSPALPALAHLIHS-------------------NDDEVLTDACWALSY  269 (530)
Q Consensus       223 ~~~L~~L~~~~---~~~~~~~-----------~~~~l~~L~~ll~~-------------------~d~~v~~~a~~~l~~  269 (530)
                      +.+|..|+...   .......           ...+++.+..++..                   .+..+...++.++.+
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            88888886542   1111110           11333444444432                   123456667777766


Q ss_pred             hccCChHHHHHHHHhC--cHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc--hhhHHHhh---cCchHHHHHhhc-----
Q 009622          270 LSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIE---YQALPCLLNLLS-----  337 (530)
Q Consensus       270 l~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~--~~~~~~~~---~~~l~~L~~lL~-----  337 (530)
                      ....-+  ...+....  +++.+..++.  ++.++..|+.+|..++....  .....++.   ...+..++..+.     
T Consensus       234 ~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~  309 (1204)
T 3a6p_A          234 YIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG  309 (1204)
T ss_dssp             TTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred             HHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence            554332  12233332  6777776665  46789999999999987442  21111221   111334444432     


Q ss_pred             --CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009622          338 --GNYKKSIKKEACWTVSNITAGNREQIQAVIE-----------ANIIGPLVALLENAEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       338 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  400 (530)
                        ++.+.++.+..+.++..++.    ....++.           .++++.++.+..+++..+-..++.....+...
T Consensus       310 ~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          310 GLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence              11145677777777777762    1222221           24678888888888888888887766666543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.45  E-value=1  Score=43.74  Aligned_cols=123  Identities=16%  Similarity=0.144  Sum_probs=89.6

Q ss_pred             CchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 009622          214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (530)
Q Consensus       214 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l  293 (530)
                      .+....+-|+..+..+....|    .....++..++.+....|..|+..++..|..+|..  +.+.     .+.+.|.++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql  108 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL  108 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence            357788888888888877654    23466788899999999999999999999999977  3333     466789999


Q ss_pred             hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009622          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (530)
Q Consensus       294 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (530)
                      |..+++.-...+-.+|..+...++..        .+..+..-+..+ ++.+|..+...|..-.
T Consensus       109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTKL  162 (507)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHHG
T ss_pred             HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHHH
Confidence            99988777777767776666544432        344555555556 7788888777775533

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.31  E-value=0.48  Score=42.01  Aligned_cols=142  Identities=14%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-----HHHHHHH-----
Q 009622          341 KKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGT-----HEQIKFL-----  409 (530)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l-----  409 (530)
                      +.....++..||..+.. +......++. .+.+..+...+.++++.++..|+..|.-++....     ....+.+     
T Consensus        67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~  145 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  145 (233)
T ss_dssp             HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence            44667788888888864 3455555654 5678888888888899999999888877765322     1111221     


Q ss_pred             -HHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHH
Q 009622          410 -VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  487 (530)
Q Consensus       410 -~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~  487 (530)
                       -+..-...+++.++ +.+.+....++..+..++...+....     --..+..|..+|..+.|+.+....++++..+..
T Consensus       146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~-----R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence             12235667888777 45667888888888888776543221     123677888999999999999989998866554


Q ss_pred             H
Q 009622          488 K  488 (530)
Q Consensus       488 ~  488 (530)
                      .
T Consensus       221 ~  221 (233)
T 2f31_A          221 V  221 (233)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.15  E-value=0.7  Score=40.96  Aligned_cols=141  Identities=13%  Similarity=0.152  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCChhhHHHHHh-CC
Q 009622           91 YECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIASGTSEHTKVVID-HG  159 (530)
Q Consensus        91 ~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g  159 (530)
                      ..-+..|+..+...+..-++.+ ..+++..|+++|..    +      .+...+..++.||..+.. +......+.. .+
T Consensus        19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~   96 (233)
T 2f31_A           19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEE   96 (233)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSS
T ss_pred             HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcH
Confidence            3455566655554322334455 35557777776653    1      125778999999999987 5666666665 56


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009622          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (530)
Q Consensus       160 ~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~  227 (530)
                      .+..+...|.++++.++..++..|+.+|..+. .. ...++          +..-..+++..+..+.+.+.+.+++..+.
T Consensus        97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN  176 (233)
T 2f31_A           97 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN  176 (233)
T ss_dssp             HHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            78899999988999999999999998886543 11 22221          22245556666644455666666666665


Q ss_pred             hhccCC
Q 009622          228 NFCRGK  233 (530)
Q Consensus       228 ~L~~~~  233 (530)
                      .+....
T Consensus       177 ~li~~~  182 (233)
T 2f31_A          177 ALITPA  182 (233)
T ss_dssp             HHHTTC
T ss_pred             HHHCCC
Confidence            565554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.05  E-value=0.98  Score=41.70  Aligned_cols=174  Identities=11%  Similarity=0.056  Sum_probs=99.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCch
Q 009622          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG----AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR  192 (530)
Q Consensus       118 v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~  192 (530)
                      +..+.++++.+.  +.+.-++-.+.-.+. ++.....+.+..    ++..++..+.. ..+..+-.++++++|+..... 
T Consensus       105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            345555554433  334444444444443 444444443321    22334444443 446678889999999987665 


Q ss_pred             hhhhHhhc--CChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHH
Q 009622          193 CRDLVLSQ--GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALS  268 (530)
Q Consensus       193 ~~~~i~~~--~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~l~  268 (530)
                      .++.+...  .++..+...+ .+.+..++..+..++.|++... ..........++..+..++.. .|.+....++.+|+
T Consensus       181 g~~~l~~~~~~il~~~~~~~-~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALG  259 (304)
T 3ebb_A          181 GQKLMMSQRESLMSHAIELK-SGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALG  259 (304)
T ss_dssp             HHHHHHHTHHHHHHHHHGGG-SSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            55555432  1233333333 4567888889999999988653 112222333455555555643 58899999999999


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009622          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (530)
Q Consensus       269 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~  296 (530)
                      ++...+.+..+.....++-..+-.+...
T Consensus       260 tL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          260 TLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            9997765544433344554444444444

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.00  E-value=1.9  Score=48.43  Aligned_cols=296  Identities=9%  Similarity=0.039  Sum_probs=160.6

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHhhhCC-----Cchhhh
Q 009622          123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SPRCRD  195 (530)
Q Consensus       123 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~nl~~~-----~~~~~~  195 (530)
                      ..++...++..+.+|-..|..+-. +++         +...+...|  .+.+..++..|+.+|.+....     .++.+.
T Consensus        19 ~~~~p~~~~~~r~~Ae~~L~~~~~-~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~   88 (1204)
T 3a6p_A           19 VMMDPNSTQRYRLEALKFCEEFKE-KCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV   88 (1204)
T ss_dssp             HHHCTTCCHHHHHHHHHHHHHHHH-HCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred             HHhCCCCChHHHHHHHHHHHHHHh-Cch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            344332236788888888877654 221         233333333  346788999999999887632     222222


Q ss_pred             hHhhcCChHHHHHhhcC--CCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 009622          196 LVLSQGGLVPLLAQLNG--QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~  273 (530)
                      .+ +..++..+......  .....++..++.++..++...-.   .....+++.++.++.+ ++.....++.+|..+++.
T Consensus        89 ~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee  163 (1204)
T 3a6p_A           89 YL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED  163 (1204)
T ss_dssp             HH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence            22 22233333322101  14577888888899888876411   2346788888888866 455566677777777532


Q ss_pred             -------ChHHHHH---HHHh---CcHHHHHHhhCC-------------------CCchhHHHHHHHHhHhhcCCchhhH
Q 009622          274 -------TNDKIQA---VIEA---GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGDDMQTQ  321 (530)
Q Consensus       274 -------~~~~~~~---~~~~---~~i~~L~~lL~~-------------------~~~~~~~~a~~~L~nl~~~~~~~~~  321 (530)
                             ...+...   .+..   .++..+..++..                   .+..+...++.++.+...--+  ..
T Consensus       164 v~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~  241 (1204)
T 3a6p_A          164 VVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MS  241 (1204)
T ss_dssp             HHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HH
T ss_pred             HccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HH
Confidence                   1111111   1111   222333333322                   123356667777766554222  12


Q ss_pred             HHhhcC--chHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHH---hCcHHHHHHHHh--------cCchhH
Q 009622          322 CVIEYQ--ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQAVIE---ANIIGPLVALLE--------NAEFDI  386 (530)
Q Consensus       322 ~~~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~---~~~i~~L~~ll~--------~~~~~v  386 (530)
                      .+.+..  +++.+..++.   ++.++..|+.+|..++...  ++....++.   ...+..++..+.        +.+.++
T Consensus       242 ~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~  318 (1204)
T 3a6p_A          242 HITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVF  318 (1204)
T ss_dssp             HHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHH
T ss_pred             HHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHH
Confidence            233332  6777776665   5678999999999999732  343322322   111334444432        224567


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHH-----------cCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          387 KKEAAWAISNATSGGTHEQIKFLVI-----------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                      .+..+..+..+..    .. ..++.           .++++.+..+...++..+...++.....+++.
T Consensus       319 ~k~l~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          319 LKRLCQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            7777777777652    11 12221           13466677777777777777766666655544

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.95  E-value=2.3  Score=39.26  Aligned_cols=185  Identities=16%  Similarity=0.114  Sum_probs=109.4

Q ss_pred             HHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009622          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (530)
Q Consensus       288 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (530)
                      ..+.+++. -....+-+++..+.-.+. .+.....+.+.    .++..+...+.....+..+.-++++++|+..+. ...
T Consensus       106 ~~l~kil~-WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~  182 (304)
T 3ebb_A          106 QILWKAIN-CPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQ  182 (304)
T ss_dssp             HHHHHHHT-SCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHH
T ss_pred             HHHHHHHc-CCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-hhH
Confidence            44555553 233455666666655543 23222222221    233344455544335667899999999998763 344


Q ss_pred             HHHHH--hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC----CHHHHHHHHHcCChHHHHhccC-CCChHHHHHHHHH
Q 009622          364 QAVIE--ANIIGPLVALLENAEFDIKKEAAWAISNATSGG----THEQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEG  436 (530)
Q Consensus       364 ~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~----~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~al~~  436 (530)
                      +.+..  ..+++.+...+.+.+..++..++..+.|++...    +.+....     ++..+..++. ..|++....++-+
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence            44443  234455555555557889999999999998631    2222222     3444444443 4688999999999


Q ss_pred             HHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009622          437 LENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLE  491 (530)
Q Consensus       437 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~il~  491 (530)
                      |++++..+..           ........|..+.+..+... ....|.+-|..+++
T Consensus       258 LGtL~~~~~~-----------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~  302 (304)
T 3ebb_A          258 LGTLISDDSN-----------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN  302 (304)
T ss_dssp             HHHHHTTCHH-----------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred             HHHHHhCChh-----------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            9999965332           34455555666666666554 66778887777764

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.86  E-value=0.57  Score=45.00  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=108.2

Q ss_pred             hhhHHHhhcCchHHHHHhhcC----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhH
Q 009622          318 MQTQCVIEYQALPCLLNLLSG----------NYKKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDI  386 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v  386 (530)
                      ...+.+. .+++..|+.+|..          ..+......+..||..+... ......++. ...+..|...+.+..+.+
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~  178 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  178 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence            4444444 4455666666631          11346777888888888644 455555554 567899999999889999


Q ss_pred             HHHHHHHHHHhhcCCC-----HHHHHHH------HHcCChHHHHhccCC-CChHHHHHHHHHHHHHHhhhhhhhhcCCCC
Q 009622          387 KKEAAWAISNATSGGT-----HEQIKFL------VIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTD  454 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~l~~L~~lL~~-~~~~v~~~al~~l~~ll~~~~~~~~~~~~~  454 (530)
                      +..|+..|.-++....     ....+.+      -+..-...+++.|+. .+.+....++..+..++...+....     
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~-----  253 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----  253 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence            9999999988776432     1111111      223457788888886 5677888888888888876543321     


Q ss_pred             chhhHHHhhhhccHHHHHHHhcCCCHHHHHH
Q 009622          455 VNVFTQMIDDAEGLEKIESLQTHDNAEIYEK  485 (530)
Q Consensus       455 ~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~  485 (530)
                      --..+..|..+|..+.+..+....++++...
T Consensus       254 R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          254 RVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence            1236777889999999999988888877543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.66  E-value=1.3  Score=42.56  Aligned_cols=157  Identities=12%  Similarity=0.114  Sum_probs=104.3

Q ss_pred             HHHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 009622           76 PVMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNI  144 (530)
Q Consensus        76 ~~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~----------~~~~~i~~~a~~~L~~l  144 (530)
                      ..++..|.++-. ......+..|+.-+...+..-++.++ .+++..|+.+|..          ..+...+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            455666665432 22345677777666654333456666 4557888887752          11257889999999999


Q ss_pred             hcCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhc
Q 009622          145 ASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN  211 (530)
Q Consensus       145 ~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~  211 (530)
                      .. +......++. ...+..|...|.++.+.++..++.+|+.+|.... .. ...++          +..-..+++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            87 5556666665 5778999999999999999999999999996553 21 22222          2334667788774


Q ss_pred             CCCchhHHHHHHHHhhhhccCCC
Q 009622          212 GQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       212 ~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      ...+.+...+++..+..+....+
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCC
Confidence            44567777766666666666543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.14  E-value=5.1  Score=44.21  Aligned_cols=172  Identities=14%  Similarity=0.166  Sum_probs=110.2

Q ss_pred             hHHHHHhhcC---CCchhHHHHHHHHhhhh----ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009622          203 LVPLLAQLNG---QPKLSMLRNATWTLSNF----CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       203 i~~Ll~ll~~---~~~~~~~~~a~~~L~~L----~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                      +..+..++..   ..++.+...++.+++.|    |...+.........+...+...+...+.+-..-++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            4445555522   12455555566555554    44433333344555666677777777888888899999998642  


Q ss_pred             HHHHHHHHhCcHHHHHHhhCC-----C--CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHH
Q 009622          276 DKIQAVIEAGVFPRLAEFLMH-----P--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKE  347 (530)
Q Consensus       276 ~~~~~~~~~~~i~~L~~lL~~-----~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~  347 (530)
                               ..++.|.+++..     .  ...++..|+++|.+++...+...        -+.+++++.+. .++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence                     345666666642     1  23577889999999986554333        34567777432 28899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCH
Q 009622          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTH  403 (530)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~  403 (530)
                      |+..|.... -+.         ..+..+...+.. .+..|.......|.+++....+
T Consensus       534 A~~~Lm~t~-P~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFESK-PSV---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHTC-CCH---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHC-cCH---------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            998885431 122         244556666655 4788999999999999987665

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.81  E-value=2.5  Score=40.55  Aligned_cols=140  Identities=14%  Similarity=0.085  Sum_probs=96.0

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHH-hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-----HHHHH-----
Q 009622          341 KKSIKKEACWTVSNITAGNREQIQAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE-----QIKFL-----  409 (530)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-----~~~~l-----  409 (530)
                      +.....++..||..+... ......++. .+.+..+...+.+..+.++..++..|..++....++     ....+     
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            456677888888888654 445555554 567888888888888999999987777766543211     11111     


Q ss_pred             -HHcCChHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009622          410 -VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS  486 (530)
Q Consensus       410 -~~~~~l~~L~~lL~-~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a  486 (530)
                       -+..-...+++.+. ..+.+....++..+..++...+....     --.++..|..+|..+.|..|....++++....
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi  223 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQL  223 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence             12234667777776 45667888888888888876654322     12367889999999999999988888876543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.42  E-value=7.3  Score=42.94  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=109.0

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHhhhC----CCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhh
Q 009622          161 VPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       161 i~~L~~lL~~----~~~~~~~~a~~~L~nl~~----~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L  229 (530)
                      +..+..++.+    .++.+++.++.+++.+..    ..+.|..     ..++.+.+.+.   ...+.+-...++.+|.|+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            4556666655    467788888888887752    3222221     22444444432   344667778889999998


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCCch
Q 009622          230 CRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPS  300 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~  300 (530)
                      -..          ..++.|.+++..       ....++..|+++|..+....+..++        +.++++.  ...+++
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence            752          356777777642       1356888999999999876654433        4566676  345778


Q ss_pred             hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009622          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (530)
Q Consensus       301 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (530)
                      +|..|+..|-..   ++..       ..+..+...+..+.+..|.....-.|.+++..+
T Consensus       530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            888888877432   2221       235667777777658888888888888888754

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=92.88  E-value=3.9  Score=39.06  Aligned_cols=234  Identities=14%  Similarity=0.040  Sum_probs=111.2

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      +..++...+..|+.++.+++++-|+..-.+|.++-+.-...|..+.. .+-..+.+.+.....-.-....+.+++.+..+
T Consensus       123 k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinG  201 (403)
T 3fga_B          123 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIING  201 (403)
T ss_dssp             TTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHcc
Confidence            34444556788999999999999999998888876554444443322 12333444442222223333445555555554


Q ss_pred             CCC-CChhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622          233 KPQ-PPFDQVSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       233 ~~~-~~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~  310 (530)
                      -.. .......-....|+.+-....-. .-.....++......++.....+     +..|+..=-..+..-...-+.-+.
T Consensus       202 fa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele  276 (403)
T 3fga_B          202 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE  276 (403)
T ss_dssp             CCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHH
Confidence            421 12222222334444444433211 11222333333333333322211     122222111122222222233344


Q ss_pred             HhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHH----hcC
Q 009622          311 NIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALL----ENA  382 (530)
Q Consensus       311 nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll----~~~  382 (530)
                      .+....+ ...+. +...+...+...+.+. +..|-+.|.....|      +.+..++.   ..++|.++..+    ...
T Consensus       277 ~iLe~~~~~~f~~-i~~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~~H  348 (403)
T 3fga_B          277 EILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKTH  348 (403)
T ss_dssp             HHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHhCCHHHHHH-HHHHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence            4443222 22211 2223566777778877 77777776654321      22222222   12455544444    222


Q ss_pred             -chhHHHHHHHHHHHhhcC
Q 009622          383 -EFDIKKEAAWAISNATSG  400 (530)
Q Consensus       383 -~~~v~~~a~~aL~nl~~~  400 (530)
                       +..|+..+..++.-+...
T Consensus       349 Wn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          349 WNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             SCHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHh
Confidence             788998888888877653

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.72  E-value=4.8  Score=38.59  Aligned_cols=156  Identities=12%  Similarity=0.118  Sum_probs=97.2

Q ss_pred             HHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 009622           77 VMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA  145 (530)
Q Consensus        77 ~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~  145 (530)
                      .++..|.+... ......+..|+..+...+..-++.+. .+++..|+.+|..    .      .+...+..++.||..+.
T Consensus         8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            34555554322 21233456666555543223344554 4557777776642    1      12578899999999998


Q ss_pred             cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hh-hhhHh----------hcCChHHHHHhhcC
Q 009622          146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNG  212 (530)
Q Consensus       146 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~-~~~i~----------~~~~i~~Ll~ll~~  212 (530)
                      . +......+.. .+++..+...|.++++.++..++.+|+.+|.... .. ...++          +..-..+++..+..
T Consensus        87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            8 5555555554 5778999999998999999999999998886543 11 22221          22345567777755


Q ss_pred             CCchhHHHHHHHHhhhhccCCC
Q 009622          213 QPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       213 ~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      +.+.+...+++..+..+....+
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~  187 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAE  187 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCS
T ss_pred             CChHHHHHHHHHHHHHHHCCCC
Confidence            5667777666666666666643

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=91.59  E-value=9.1  Score=37.17  Aligned_cols=236  Identities=14%  Similarity=0.026  Sum_probs=118.8

Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      ..+..++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+.. .+-..+.+.+.......-....+.+++.+.
T Consensus       154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIi  232 (449)
T 2npp_B          154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII  232 (449)
T ss_dssp             TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred             hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence            3344555567888999999999999999998888876554445544332 133345555533333344455666666666


Q ss_pred             cCCCC-CChhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHH
Q 009622          231 RGKPQ-PPFDQVSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (530)
Q Consensus       231 ~~~~~-~~~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~  308 (530)
                      .+... .......-....|+.+.....-. .-.....++......++.....+     +..|+..=-..+..-...-+.-
T Consensus       233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~e  307 (449)
T 2npp_B          233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNE  307 (449)
T ss_dssp             SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHH
T ss_pred             hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHH
Confidence            66522 22222223344455555544321 11222333333333333322211     1222222111222222223333


Q ss_pred             HhHhhcCCc-hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---hCcHHHHHHHHhc---
Q 009622          309 VGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE---ANIIGPLVALLEN---  381 (530)
Q Consensus       309 L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~---  381 (530)
                      +..+....+ ...+.+ ...+...+..++.+. +..|-+.|+....|      +.+..++.   ..++|.++..+..   
T Consensus       308 leeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L~~~s~  379 (449)
T 2npp_B          308 LEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSK  379 (449)
T ss_dssp             HHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHHHHHHH
Confidence            444443222 222222 234667777888887 77787777654322      22222222   1255666665522   


Q ss_pred             --CchhHHHHHHHHHHHhhcC
Q 009622          382 --AEFDIKKEAAWAISNATSG  400 (530)
Q Consensus       382 --~~~~v~~~a~~aL~nl~~~  400 (530)
                        -+..|+..|..++.-+...
T Consensus       380 ~HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          380 THWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             CCSSTTHHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHHHHHH
Confidence              2667888888887766554

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.54  E-value=3.3  Score=37.62  Aligned_cols=134  Identities=15%  Similarity=0.114  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHhHhhcCCchhhHHHh--hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--hCcHHHH
Q 009622          300 SVLIPALRTVGNIVTGDDMQTQCVI--EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIE--ANIIGPL  375 (530)
Q Consensus       300 ~~~~~a~~~L~nl~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L  375 (530)
                      .....|+..|-.++..-.... .++  +..++..|+ +.... .+.++..|+.+++...+.+|..+..+.+  ..++..+
T Consensus        43 ~~le~aLD~L~ElSHDi~~G~-KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           43 ARLEDSFDRIMEFAHDYKHGY-KIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHGGGTTSHHHHH-HHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHhhh-HHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            345667777777765333332 333  233444444 22334 6789999999999999999999888775  3455666


Q ss_pred             HHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC--ChHHHHHHHHHHHHHHh
Q 009622          376 VALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK  442 (530)
Q Consensus       376 ~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~v~~~al~~l~~ll~  442 (530)
                      +.-|..       ...-+++.-+.+|.-|+.... .+     ....+..|..++...  ++.++..++..+..++.
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            554433       233567777778877777531 11     134556666666655  88899999999888885

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=87.62  E-value=2.1  Score=34.07  Aligned_cols=76  Identities=9%  Similarity=0.176  Sum_probs=53.5

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhh-hhccHHHHHHHhcCCC--------HHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMID-DAEGLEKIESLQTHDN--------AEIYE  484 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~--------~~v~~  484 (530)
                      +++.|..-|..+++.+...+|.+|..|+..+...          |...+. ....+..+.+....++        ..|..
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~  119 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRE  119 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHH
Confidence            5677788888888999999999999999877542          333333 2333444444444433        67999


Q ss_pred             HHHHHHHHhCCCCCC
Q 009622          485 KSVKLLETYWLDDED  499 (530)
Q Consensus       485 ~a~~il~~~~~~~~~  499 (530)
                      +|.++++-.|+++..
T Consensus       120 ~AkEl~~ll~d~~~~  134 (140)
T 1vdy_A          120 TAHETISAIFSEENG  134 (140)
T ss_dssp             HHHHHHHHHTCCSSC
T ss_pred             HHHHHHHHHhCcCCC
Confidence            999999999986554

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=87.01  E-value=16  Score=32.52  Aligned_cols=100  Identities=9%  Similarity=0.073  Sum_probs=70.6

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      -.+++.......+.+...+...+.++... ++..   . ..+++.++.+..+.+ .++|...+..+...+...++.... 
T Consensus        18 ~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~l---l-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~-   90 (257)
T 3gs3_A           18 VDWCNELVIASPSTKCELLAKVQETVLGS-CAEL---A-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH-   90 (257)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGGG---H-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred             HHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHhH---H-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34444444433368889999999977664 2321   1 335777888776666 899999999999888755544433 


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhh
Q 009622          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNI  186 (530)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl  186 (530)
                          .++.|..++.+.++.+...++.+.+++
T Consensus        91 ----~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           91 ----VINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             ----HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                467888889888899998888877776

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=86.66  E-value=2.2  Score=35.18  Aligned_cols=73  Identities=12%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~il~~  492 (530)
                      ++..|..-|...++.++..+|..|..+++.+..          .|...+.....++.+..+... .++.|++++..+|+.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~----------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~  122 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK----------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE  122 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH----------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH----------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            455666677788999999999999999987533          255566666667777766544 788999999999998


Q ss_pred             hCCC
Q 009622          493 YWLD  496 (530)
Q Consensus       493 ~~~~  496 (530)
                      |-..
T Consensus       123 W~~~  126 (163)
T 1x5b_A          123 WSEE  126 (163)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7553

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=86.64  E-value=4.9  Score=38.21  Aligned_cols=118  Identities=18%  Similarity=0.149  Sum_probs=82.1

Q ss_pred             hCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhh
Q 009622          369 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK  448 (530)
Q Consensus       369 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~  448 (530)
                      .++++.++.+..+.+.++|+.++..|...+.. ..+...     .+++.|..+|.++++.++..++.+..++....-..-
T Consensus        62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i  135 (386)
T 3o2t_A           62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM  135 (386)
T ss_dssp             GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            36889999988888999999999999888763 223322     357788888889999999888888887764332221


Q ss_pred             hcCCCC---chhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          449 NLGNTD---VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       449 ~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ......   .+.....+..  ..+.|..+..+.+..|+-.|.+.++++.
T Consensus       136 ~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          136 VKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             HHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            111100   1233444432  3466777788999999999999999854

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=86.57  E-value=8.1  Score=35.12  Aligned_cols=149  Identities=12%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             HHHHHHhhcCC------ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009622          245 LPALAHLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       245 l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~  317 (530)
                      +..+..++.+.      |......++-.|..++..-..-.+.+. +..++..|+ +.....+.+++.|.++|+.....+|
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP  102 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP  102 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence            33444455544      445567788888888765444444333 334444444 3344566799999999999999999


Q ss_pred             hhhHHHhhc--CchHHHHHhhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC--chhHH
Q 009622          318 MQTQCVIEY--QALPCLLNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA--EFDIK  387 (530)
Q Consensus       318 ~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~  387 (530)
                      .....+.+.  .++..++.-|..    .  ....+++.-+.+|.-|...+..    + ....+..|.+++...  ++.+|
T Consensus       103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k  177 (315)
T 3qml_C          103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQ  177 (315)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHH
Confidence            888777643  444444444432    1  1335667777777777765421    1 134567777777766  88999


Q ss_pred             HHHHHHHHHhhc
Q 009622          388 KEAAWAISNATS  399 (530)
Q Consensus       388 ~~a~~aL~nl~~  399 (530)
                      ..++..+..+..
T Consensus       178 ~Kvl~li~d~f~  189 (315)
T 3qml_C          178 IKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            999988887763

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=86.32  E-value=2  Score=34.75  Aligned_cols=74  Identities=8%  Similarity=-0.107  Sum_probs=59.9

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHhhh
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll~~~  444 (530)
                      .+..|.+-+.+.++.++..|+..|-.++.++...+...+.+..++..|+.++..      .++.|...++..+.......
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            455677778889999999999999999998887777777788888889888863      46788888888777665443

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=85.08  E-value=2.2  Score=34.21  Aligned_cols=72  Identities=13%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      ++..|..-|.+.++.++..++..|..+++.+..          .|...+.....++.+..+....++.|++++..+++.|
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~----------~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W  112 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK----------IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW  112 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----------HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH----------HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            455666667788899999999999988876533          2455555566667777776678899999999999987


Q ss_pred             CC
Q 009622          494 WL  495 (530)
Q Consensus       494 ~~  495 (530)
                      ..
T Consensus       113 ~~  114 (140)
T 3ldz_A          113 TD  114 (140)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=85.03  E-value=0.73  Score=27.38  Aligned_cols=39  Identities=31%  Similarity=0.499  Sum_probs=26.1

Q ss_pred             HhhhhcCCCCCchHHhhhhhhHHHHHHHHhhhHHHHhhhh
Q 009622           11 SRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRR   50 (530)
Q Consensus        11 ~~~~~~k~~~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~   50 (530)
                      +|...||+.....+..+||.+ -.+.-|++|-+..+..|+
T Consensus         2 PR~sqYK~k~~~~~q~~rRr~-~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSERRRR-LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTHHHHH-HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            477889984333444444444 578888888888887763

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=85.00  E-value=3.4  Score=33.43  Aligned_cols=71  Identities=8%  Similarity=-0.098  Sum_probs=57.6

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHH
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENIL  441 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll  441 (530)
                      .+..|.+-+.++++.++..|+..|-.++.++...+...+.+..++..|+.++..      .++.|+..++..+....
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            455677778889999999999999999998887777787888889999988864      36788888777666544

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=84.80  E-value=7.7  Score=34.62  Aligned_cols=117  Identities=13%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009622          370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN  449 (530)
Q Consensus       370 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~  449 (530)
                      ++++.++.+..+.+.++|+..+..|...+.. .++...     .+++.|..++.++++.+...++.+...+....-..-.
T Consensus        53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~  126 (257)
T 3gs3_A           53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC  126 (257)
T ss_dssp             HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3566777766667899999999999888753 223222     3577888889999999999999988888764433221


Q ss_pred             cCCCC---chhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          450 LGNTD---VNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       450 ~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ...+.   .+.....+.  ...+.|..+..+.+..++-.|.+.++++.
T Consensus       127 ~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          127 SLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            11100   123344442  23466777788999999999999999854

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=84.73  E-value=28  Score=33.09  Aligned_cols=88  Identities=10%  Similarity=0.126  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009622           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (530)
Q Consensus        88 ~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  167 (530)
                      +.+...+..+++++-.. ++.    .-.++++.++++-.+.+ .++|...+..|...+....+....     +++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLLK-----LIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            46888899999976543 332    12567999999988887 999999999999888755555433     46788888


Q ss_pred             hCCCCHHHHHHHHHHHHhh
Q 009622          168 LYSPSDDVREQAVWALGNI  186 (530)
Q Consensus       168 L~~~~~~~~~~a~~~L~nl  186 (530)
                      |.+.++.+...++.+.+++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            8888899998888888776

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=84.29  E-value=3.8  Score=34.07  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..-+.+.++.++..+|..|..+++.+...          |...+.....++.|..+..      ..+..|++++.
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil  120 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVI  120 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHH
Confidence            4566667778899999999999999999875432          5666777777888888764      35789999999


Q ss_pred             HHHHHhCCC
Q 009622          488 KLLETYWLD  496 (530)
Q Consensus       488 ~il~~~~~~  496 (530)
                      .+|+.|-..
T Consensus       121 ~li~~W~~~  129 (171)
T 1juq_A          121 ELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=82.81  E-value=4.1  Score=32.89  Aligned_cols=74  Identities=11%  Similarity=0.083  Sum_probs=57.3

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..-|.+.++.++..||..|..+++.+..          .|...+.....++.|..+..      ..+++|++++.
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~----------~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil  108 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE----------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVI  108 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHH
Confidence            456666667889999999999999999987533          25667777777888887754      25889999999


Q ss_pred             HHHHHhCCCC
Q 009622          488 KLLETYWLDD  497 (530)
Q Consensus       488 ~il~~~~~~~  497 (530)
                      .+|+.|-...
T Consensus       109 ~li~~W~~~f  118 (148)
T 1mhq_A          109 EILFSWTVWF  118 (148)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHc
Confidence            9999885543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=82.65  E-value=4.2  Score=32.90  Aligned_cols=72  Identities=15%  Similarity=0.199  Sum_probs=56.3

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..-+.+.++.++..++..|..+++.+..          .|...+....+++.|..+..      +.+++|++++.
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~----------~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil  118 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK----------RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKIL  118 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH----------HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH----------HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHH
Confidence            455666667788999999999999999876643          25666777777888887764      46899999999


Q ss_pred             HHHHHhCC
Q 009622          488 KLLETYWL  495 (530)
Q Consensus       488 ~il~~~~~  495 (530)
                      .+|+.|-.
T Consensus       119 ~li~~W~~  126 (149)
T 3g2s_A          119 ELLYSWTV  126 (149)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998854

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=81.40  E-value=3.5  Score=34.30  Aligned_cols=71  Identities=8%  Similarity=-0.053  Sum_probs=56.4

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHH
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENIL  441 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll  441 (530)
                      .+..|.+-+.++++.++..|+..|-.++.++.......+.+..++..|+.++..      .++.|+..++..+...-
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  127 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  127 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            456777788889999999999999999998776777777777888888888863      35678888877766544

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=80.16  E-value=2.4  Score=33.96  Aligned_cols=73  Identities=5%  Similarity=-0.001  Sum_probs=57.3

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhh
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~  443 (530)
                      .+..|.+-+.+.++.++..|+..|-.++.++.......+.+...+..|..+++..++.|...++..+......
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~  115 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE  115 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            4556777788889999999999999999888777666666667777787777777888999888877766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	530
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-134
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-93
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-45
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-15
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-11
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-20
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	0.002
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-10
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-09
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-10
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	3e-07
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	3e-04
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.004

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  397 bits (1021), Expect = e-134
 Identities = 265/500 (53%), Positives = 336/500 (67%), Gaps = 14/500 (2%)

Query: 12  RRNKYKVA--VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQN-------QQPLAND 62
           RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             +   +  
Sbjct: 6   RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 65

Query: 63  VNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV 122
            +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR V
Sbjct: 66  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 125

Query: 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
           EF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WA
Sbjct: 126 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 185

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQV 241
           LGN+AGDS   RD VL    + P+L  L    K S++R ATWTLSN CRGK PQP +  V
Sbjct: 186 LGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 244

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           S ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V
Sbjct: 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 304

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361
             PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN E
Sbjct: 305 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTE 363

Query: 362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLC 419
           QIQAVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLC
Sbjct: 364 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 423

Query: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479
           DLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N
Sbjct: 424 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 483

Query: 480 AEIYEKSVKLLETYWLDDED 499
            +IYEK+ K++ETY+ ++ED
Sbjct: 484 DKIYEKAYKIIETYFGEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  289 bits (740), Expect = 2e-93
 Identities = 208/425 (48%), Positives = 278/425 (65%), Gaps = 11/425 (2%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           FE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 195 DLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALA 249
           DLV+  G + PLLA L            LRN TWTLSN CR K   PP D V   LP L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEA 369
           GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ V+  
Sbjct: 255 GNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 370 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 429
            ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D +I
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 373

Query: 430 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL 489
           + V L+ + NI +  E        +    + MI++  GL+KIE+LQ H+N  +Y+ S+ L
Sbjct: 374 IQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 428

Query: 490 LETYW 494
           +E Y+
Sbjct: 429 IEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 8e-45
 Identities = 59/450 (13%), Positives = 123/450 (27%), Gaps = 70/450 (15%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
                        +I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--- 339
            +G+   L  ++ +   +           +    ++  +   E       L   + N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 340 ----------YKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKE 389
                         +              N +    +  ++ I   + L+  ++ D   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 390 AAWAISNATSGGTHEQI-----KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 444
           A        +               + +  +  +  LL   +  +V      L N+ +  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 445 EAEKNLGNTDVNVF-----------------------------------TQMIDDAEGLE 469
              + +GN                                          +    +  L 
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 470 KIESL-QTHDNAEIYEKSVKLLETYWLDDE 498
            I +L ++  + +  E +  LL   W   E
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 5e-17
 Identities = 44/308 (14%), Positives = 94/308 (30%), Gaps = 28/308 (9%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 175 VR------EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ--------LNGQPKLSMLR 220
            R      E  +  L N++            Q       A          + +    M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQ 279
           N    L           +   S A+    +L+  +  +        AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 280 A-----VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
                  ++    P++A  L   +  V+      + N+          V+  Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 335 LLSGNYKKS-----IKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFD-IKK 388
           LL+ +   +     I   AC+TV N+ A   +  +    ++++  ++ L  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 389 EAAWAISN 396
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 6e-15
 Identities = 27/302 (8%), Positives = 69/302 (22%), Gaps = 18/302 (5%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
              A  AL  L   +                   L     + +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 320 TQCVIEYQALPCLLNLLSGNYK--------------KSIKKEACWTVSNITAGNREQIQA 365
            + +I          ++                     +   A   + N+++ +  +   
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 366 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 425
              + +I  L+A ++N     + +     +               +    + L       
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 426 DPRIVTV-CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK--IESLQTHDNAEI 482
                +  C     + +     +  L   + N             +  +  +        
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 483 YE 484
            E
Sbjct: 301 LE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 2e-13
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 16/237 (6%)

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202
            + +   +      +            + SD +              +P+    +     
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD------QVSPALPALAHLIHSND 256
           +   L  +    K + L      L N    K                 LP +A L+ S +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------PSPSVLIPALRTVG 310
            +V+      LS +S   +  +  V+   VFP +   L         S  +L  A  TV 
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI 367
           N++       +       L  ++NL   +      + A   +S++   ++E +Q V+
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM-WSSKE-LQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 3e-10
 Identities = 24/186 (12%), Positives = 54/186 (29%), Gaps = 14/186 (7%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR---- 114
              +    G     + +   +  +  +      E      + L+  +      + +    
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328

Query: 115 -SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL----- 168
               +P+    L +     +    A  L+N++         V+ +   P   +LL     
Sbjct: 329 KEKGLPQIARLL-QSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTG 385

Query: 169 -YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
             S S+D+   A + + N+    P+      S   L  ++              A   LS
Sbjct: 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

Query: 228 NFCRGK 233
           +    K
Sbjct: 446 DMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (243), Expect = 2e-22
 Identities = 49/283 (17%), Positives = 94/283 (33%), Gaps = 5/283 (1%)

Query: 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            A+P   KLL      V  +A   +  ++        ++ S   +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278
            R    TL N    +        S  +PAL  ++ S  D VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
            AV  AG   ++   L   +   L      +  +  G+      ++       L+N++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 339 NYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT 398
              + +       +  + +       A++EA  +  L   L +    + +   W + N  
Sbjct: 197 YTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 399 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 441
              +    K   ++G +  L  LL   D  +VT     L N+ 
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.9 bits (239), Expect = 5e-22
 Identities = 74/481 (15%), Positives = 133/481 (27%), Gaps = 64/481 (13%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQL 133
           +P +   +   D  V  +      +L   E       ++RS  +V   V  +   +  + 
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
               A  L N++    E    +   G +P  VK+L SP D V   A+  L N+       
Sbjct: 77  ARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 194 RDLVLSQGGLVPLLAQ------------------------------------------LN 211
           +  V   GGL  ++A                                           + 
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271
                 +L   +  L          P    +  + AL   +      ++ +  W L  LS
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC 331
           D    +       G+   L + L     +V+  A   + N+   +      V +   +  
Sbjct: 256 DAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312

Query: 332 LLNLLSGNYKKSIKKE----ACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387
           L+  +     +    E    A   +++          AV     +  +V LL        
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372

Query: 388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP---------RIVTVCLEGLE 438
            +A   +    +            QG I  L  LLV                   +EG+ 
Sbjct: 373 IKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431

Query: 439 NILKVGEAEKNLGNTDVNVFTQ-MIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD 497
               V      L     +V  + +I     +     L       I   +  +L     D 
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491

Query: 498 E 498
           E
Sbjct: 492 E 492

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (191), Expect = 5e-16
 Identities = 69/390 (17%), Positives = 120/390 (30%), Gaps = 30/390 (7%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L  MVA +   +       T   + L +         ++ SG     V  +    Y +L 
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
                 +  + S  S +   +++ G +      L  PS  + +  +W L N++  + +  
Sbjct: 204 -WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 262

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            +    G LV LL   +           +    N  + K          AL         
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322

Query: 255 NDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
            +D  E    A   L+           AV      P + + L  PS   LI A   +   
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLS---------------------GNYKKSIKKEACWT 351
           +         + E  A+P L+ LL                      G   + I +     
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442

Query: 352 VSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISN-ATSGGTHEQIKFLV 410
           +  + A +      +   N I   V LL +   +I++ AA  +   A      E I    
Sbjct: 443 LHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI---E 498

Query: 411 IQGCIKPLCDLLVCPDPRIVTVCLEGLENI 440
            +G   PL +LL   +  + T     L  +
Sbjct: 499 AEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (159), Expect = 4e-12
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               +P  V+ L    +  L       + N+A   + H  +  + GA+P  V+LL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQ 411

Query: 174 DVR----------------------EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211
           D +                      E    AL  +A D    R ++      +PL  QL 
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNT-IPLFVQLL 469

Query: 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271
             P  ++ R A   L    + K      +   A   L  L+HS ++ V T A   L  +S
Sbjct: 470 YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (151), Expect = 4e-11
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
             +     +P FV+ LL      +Q  AA  L  +A    E  + +   GA     +LL+
Sbjct: 454 IVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLH 511

Query: 170 SPSDDVREQAVWALGNIA 187
           S ++ V   A   L  ++
Sbjct: 512 SRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.4 bits (215), Expect = 7e-20
 Identities = 38/259 (14%), Positives = 81/259 (31%), Gaps = 7/259 (2%)

Query: 103 IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162
           +E+      V+   + P   E     D  Q +  A   L ++              G   
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCENMDNAADFCQLSGMHL 62

Query: 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222
           +  + L + +  +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A
Sbjct: 63  LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 122

Query: 223 TWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + +S   R +               L   +     ++   + + L  L  G  +    +
Sbjct: 123 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 182

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-----YQALPCLLNLL 336
              G+  +L   +           L  + ++VT      +   E      + L     LL
Sbjct: 183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 242

Query: 337 SGNYKKSIKKEACWTVSNI 355
             + +   + E C  +   
Sbjct: 243 QQHEEYQEELEFCEKLLQT 261

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 2/118 (1%)

Query: 326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA-LLENAEF 384
            Q +P           +  ++ A   ++++   N +      + + +  LV   LE    
Sbjct: 15  SQPMPPTAGEAEQAADQQEREGALELLADL-CENMDNAADFCQLSGMHLLVGRYLEAGAA 73

Query: 385 DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK 442
            ++  AA  I   +      Q + L +    K L  L       +    L  +  +++
Sbjct: 74  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 131

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 2e-11
 Identities = 55/383 (14%), Positives = 121/383 (31%), Gaps = 22/383 (5%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              +F A   L       S       +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPAL 248
            + ++  +    +V  L       K  +   ++  L       P         +     +
Sbjct: 74  SKVKEYQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 249 AHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
              + S      D  V  +A   ++ +       +     + +   L   L  P  +V  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
             +  +G++V          ++   +  LL+ LS N   S  +     ++ I+     +I
Sbjct: 191 RTIIALGHLVMS--CGNIVFVDL--IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

Query: 364 QAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL--VIQGCIKPLCD- 420
              +E  II  +V      + ++++    A  +       E    +  +I  C+K L   
Sbjct: 247 GEYLE-KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 305

Query: 421 -LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 479
                 D       ++          ++    + D   +      A+ L+ + S +    
Sbjct: 306 PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 365

Query: 480 AEIYEKSVKLLETYWLDDEDETM 502
            E Y+     L + + + E+   
Sbjct: 366 PEFYKTVSPALISRFKEREENVK 388

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 1e-09
 Identities = 34/248 (13%), Positives = 80/248 (32%), Gaps = 25/248 (10%)

Query: 109  IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
              +   + V     +         ++  A  +L  +      H  +        + ++  
Sbjct: 807  CPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH----HIDLSGQLELKSVILEAF 862

Query: 169  YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-LRNATWTLS 227
             SPS++V+  A +ALG+I+  +            L  +L ++  QPK    L ++   + 
Sbjct: 863  SSPSEEVKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEII 914

Query: 228  NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287
            +        P+  V      L       ++         L         K+  +    + 
Sbjct: 915  SSASVVGLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLL 964

Query: 288  PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347
            PRL  +L+  S       +  V   ++        +++   +   L  L      ++++ 
Sbjct: 965  PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP-DLNVRRV 1022

Query: 348  ACWTVSNI 355
            A  T ++ 
Sbjct: 1023 ALVTFNSA 1030

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 10/137 (7%)

Query: 125  LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
                     +   A  L  +     E          +P     L S S   R   V A+ 
Sbjct: 936  HCECAEEGTRNVVAECLGKLTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVK 987

Query: 185  NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
                D P+  D +L     +    +    P L++ R A  T ++    KP    D +   
Sbjct: 988  FTISDHPQPIDPLLKN--CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045

Query: 245  LPALAHLIHSNDDEVLT 261
            LP L +      + +  
Sbjct: 1046 LPHLYNETKVRKELIRE 1062

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 4e-10
 Identities = 48/287 (16%), Positives = 84/287 (29%), Gaps = 29/287 (10%)

Query: 75  LPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           L  ++ G+   +    V+   T      L   ++   +E  R  ++    E     D  +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231

Query: 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192
           ++  A   L  I S   ++ +  +      I ++ + S  D+V  Q +    N+  +   
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291

Query: 193 C---RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-------------- 235
                     QG      ++   +  L  L                              
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 351

Query: 236 ------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289
                    D V   LP +   I + D      A  A   + +G        +     P 
Sbjct: 352 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 411

Query: 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
           L E +  PS  V   A  TVG I    ++  +  I    L  LL  L
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCL 455

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 49/312 (15%), Positives = 93/312 (29%), Gaps = 19/312 (6%)

Query: 84  SNDSGVQYECTTQFRKLLS---IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWA 140
           S D   +       +  +          + + I+S  +       + +  P ++      
Sbjct: 57  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 111

Query: 141 LTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
           +T IAS              +P    LL S   +  E A  AL  I  DS    D  +  
Sbjct: 112 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 167

Query: 201 GG---LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
                ++P   Q        +  +A   ++ F   + Q     +      L  L    + 
Sbjct: 168 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EV  + C AL  L +   D++   +   +   + +       +V   AL      +T  +
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAE 283

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVA 377
                 +  + LP L+ +L    K S                    +  I          
Sbjct: 284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTV 343

Query: 378 LLENAEFDIKKE 389
             ++ E  I++E
Sbjct: 344 AQQHDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 43/378 (11%), Positives = 107/378 (28%), Gaps = 25/378 (6%)

Query: 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA--VPIFVKLL 168
            V R  ++P  +  L    +          +  + +      + +I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
                 VR    W L   A            +  +  LL ++    K  +   A    + 
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFAT 504

Query: 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVF 287
                       ++  L  L         + L     A+  L+D     + +      + 
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 564

Query: 288 PRLAEFL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL------------- 332
           P L +    +      L P L  + ++ T          E     C+             
Sbjct: 565 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN 624

Query: 333 --LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFDIKKE 389
                      K     A   +S +  G    I+ ++  +NI+  +   +++   ++++ 
Sbjct: 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 684

Query: 390 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI-LKVGEAEK 448
           +   + + T          +     +  L   L      +       +  I +++G   +
Sbjct: 685 SFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ 742

Query: 449 NLGNTDVNVFTQMIDDAE 466
                 ++   ++I+   
Sbjct: 743 PYIPMVLHQLVEIINRPN 760

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 16/180 (8%)

Query: 92  ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151
                    L+      IE+++    +   +   +++  P+++  +   L ++     +H
Sbjct: 640 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 699

Query: 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA---GD--SPRCRDLVLSQGGLVPL 206
            K  I    +PI    L      V   A WA+G I+   G    P    ++     LV +
Sbjct: 700 VKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL---HQLVEI 755

Query: 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQ---PPFDQVSPALPALAHLIHSNDDEVLTDA 263
           +         ++L N   T+       PQ   P   Q          L +  D+E    A
Sbjct: 756 IN--RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW--CTSLRNIRDNEEKDSA 811

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 28/307 (9%), Positives = 68/307 (22%), Gaps = 47/307 (15%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
           ++   L +  +    +E+ R          LL +     +  +A  L             
Sbjct: 7   SKEYGLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG--------- 47

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                AV + ++     +   R+   + LG I                   L        
Sbjct: 48  --GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDK 99

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACW-------AL 267
              +   A  + +  C+  P      V  +         +                   L
Sbjct: 100 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPL 159

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327
                   +       A                 +         +     +      + +
Sbjct: 160 LINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 219

Query: 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK 387
            L  L + L    K ++  +       +  G++  +  +           L +  + +I 
Sbjct: 220 VLSVLCDELK---KNTVYDDIIEAAGEL--GDKTLLPVLDT--------MLYKFDDNEII 266

Query: 388 KEAAWAI 394
             A   +
Sbjct: 267 TSAIDKL 273

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 13/149 (8%)

Query: 125 LLREDYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
            L +    ++  A   L  +    G       +I     P  + +   P+   R   ++ 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEWAHATII-----PKVLAMSGDPNYLHRMTTLFC 503

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242
           +  ++    +  D+      ++P + ++ G P  ++  N   +L                
Sbjct: 504 INVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE- 558

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLS 271
              P L  L    D +V   A  AL+ LS
Sbjct: 559 -VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 12/176 (6%)

Query: 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           P  V+L       VR   +  +  +AG              L  L          ++   
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREA 460

Query: 222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
           AT  L        +         +P +  +    +        + ++ LS+     I   
Sbjct: 461 ATSNLKKLVEKFGKEWAHAT--IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--- 515

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
               + P +      P  +V     +++  I     +     ++ +  P L  L  
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQSEVKPILEKLTQ 568

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              +  L  +   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   L  +     +      +   ++P +  ++G P         + ++       Q   
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
            +    LP +  +       V  +   +L  +    ++     +++ V P L +      
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 299 PSVLIPALRTVGNI 312
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           +++    ++P  +  +  +    ++F  A +L  I       T   +     PI  KL  
Sbjct: 513 QDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQ 568

Query: 170 SPSDDVREQAVWALGNIA 187
               DV+  A  AL  ++
Sbjct: 569 DQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 26/186 (13%), Positives = 65/186 (34%), Gaps = 14/186 (7%)

Query: 25  GRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWS 84
           G R+   +++       E++  + R   ++    LA  +      +KL    + +A +  
Sbjct: 395 GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN--SLCMAWLVD 452

Query: 85  NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNI 144
           +   ++   T+  +KL+           I    +P+ +      +Y        + +  +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHATI----IPKVLAMSGDPNYLHRM-TTLFCINVL 507

Query: 145 ASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV 204
           +    +    +     +P  +++   P  +VR     +L  I        D    Q  + 
Sbjct: 508 SEVCGQD---ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG----PILDNSTLQSEVK 560

Query: 205 PLLAQL 210
           P+L +L
Sbjct: 561 PILEKL 566

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 30/288 (10%), Positives = 86/288 (29%), Gaps = 45/288 (15%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-L 219
             +    + SP  ++R  +   L  ++ D+               L +Q+       +  
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEG 57

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
           R                       A   L + + S D              +     ++ 
Sbjct: 58  RIL---------------------AALTLKNELVSKDSVK-------TQQFAQRWITQVS 89

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
              +  +       L+   P +   A + +  I   +          + +  +++     
Sbjct: 90  PEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP---ELMKIMVDNTGAE 146

Query: 340 YKKSIKKEACWTVSNITAGNREQIQAVIEA--NIIGPLVALLENAEF--DIKKEAAWAIS 395
             +++K+ +   +  +      Q QA++ +  NI+  +V   ++ E    ++  A  A++
Sbjct: 147 QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALA 206

Query: 396 NATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 443
           ++     +   +       ++ +C+     D  +       L  I+  
Sbjct: 207 DSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 34/142 (23%)

Query: 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN 185
           + ++   ++ + + AL+ +               A    ++ L +    +R  A W +GN
Sbjct: 1   MADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL 245
              +              V  L +L       +   A  +L                   
Sbjct: 49  FQDERA------------VEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVR 86

Query: 246 PALAHLIHSNDDEVLTDACWAL 267
            A+  L  +        A   L
Sbjct: 87  AAMEKLAETGTGFARKVAVNYL 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	530
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.74
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.67
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.65
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.53
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.43
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.39
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.37
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.37
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.31
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.11
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.06
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.02
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.95
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.91
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.73
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.64
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.39
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.3
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.39
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.9
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.74
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.73
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.62
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.74
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.5
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.44
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	94.27
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	90.85
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	88.47
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	84.89
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	84.03
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	81.9
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	80.04

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-62  Score=499.02  Aligned_cols=490  Identities=54%  Similarity=0.828  Sum_probs=426.7

Q ss_pred             CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhhHHHHhhhhccccCCCCCccC-------CCCCchhhhcCCHHHH
Q 009622            8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND-------VNAPGTAKKLENLPVM   78 (530)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~lRk~~~~~~l~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l   78 (530)
                      .+++|+++||+ + ++++|+||||+++.++|||+||++.++|||+.........+..       .......+..+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            57899999999 5 5999999999999999999999999999997543221110000       0111122234678999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009622           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (530)
Q Consensus        79 ~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  158 (530)
                      +..+.+++...+..|+..++++++....++++.+++.|++|.|+++++.+.++.++..|+|+|++++.+++.....+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999999887788899999999999999999876558899999999999999889999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-CCCC
Q 009622          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (530)
Q Consensus       159 g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~  237 (530)
                      |+++.++.+|.+++.++++.|+|+|+||+.+++.++..+...|++++++.++ .+.+..+.+.++|++++++... +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6777889999999999999876 5556


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCc
Q 009622          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (530)
Q Consensus       238 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~  317 (530)
                      .....+++|.+..++.+.|++++..++|++.+++...++....+++.|+++.++.++.++++.++..++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999888888889999999999999999999999999999999999999


Q ss_pred             hhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009622          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  397 (530)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  397 (530)
                      .....+++.|+++.+..++.++ ++.+++.++|+|+|++.+++.....+++.|+++.++.++.+++++++.+|+|+|.|+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            8888899999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCC--CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh
Q 009622          398 TSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ  475 (530)
Q Consensus       398 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  475 (530)
                      +..+  .++.+.++++.|+++.|+++|+..|++++..++++|.+++..++......+...+++...|+++||+++|+.|+
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq  479 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ  479 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG
T ss_pred             HhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHH
Confidence            9754  35778899999999999999999999999999999999998876644332224678999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCCC
Q 009622          476 THDNAEIYEKSVKLLETYWLDDED  499 (530)
Q Consensus       476 ~~~~~~v~~~a~~il~~~~~~~~~  499 (530)
                      +|++++|+++|..||++||+++||
T Consensus       480 ~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         480 QNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             GCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcCC
Confidence            999999999999999999987764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-47  Score=380.04  Aligned_cols=417  Identities=50%  Similarity=0.829  Sum_probs=385.1

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.+++.+.+++++.+..|+.+++++++...+++++.+++.|++|.|+++|++.+++.++..|+++|.+++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            58999999999999999999999999999877677888999999999999999766558999999999999999888999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCC----chhHHHHHHHHhhh
Q 009622          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSN  228 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~----~~~~~~~a~~~L~~  228 (530)
                      ..+++.|+++.|+.+|.+++.++++.|+|+|+|++.+.+..+..+...|++..++.++....    .......++|++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995332    23567789999999


Q ss_pred             hccCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHH
Q 009622          229 FCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (530)
Q Consensus       229 L~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~  307 (530)
                      ++... +........+++|.+..++.+++++++..++|++.+++..++.....+...|+++.+++++.++++.++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99887 44455567889999999999999999999999999999888888888888999999999999999999999999


Q ss_pred             HHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      ++++++.+++.....+++.|+++.+..++.+. ++.++..|+|+|++++..+.+....+.+.|+++.++.++.+++++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999998888888899999999999999998 99999999999999999989999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhcc
Q 009622          388 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG  467 (530)
Q Consensus       388 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (530)
                      ..|+|+|.|++..++.+....+.+.|+++.|+++++.++++++..++++|.+++..++...     ..+.+...+++.||
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-----~~~~~~~~~~~~~~  406 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGG  406 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHcCC
Confidence            9999999999998888999999999999999999999999999999999999998877543     35678999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          468 LEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       468 ~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      ++.|+.|++|+|++|++.|.+||++||.
T Consensus       407 ~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         407 LDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=280.37  Aligned_cols=366  Identities=24%  Similarity=0.341  Sum_probs=321.8

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.+|.++..+++ .++.++..|+++|.++++.. ......+.+.|+++.++.+|.+++ .+++..|+|+|+|++..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            689999999985 56789999999999998764 455667789999999999999988 899999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+.+.|+++.|+.++.+.+..++..++|+|.+++.............++++.++.++ .+.+.+++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999977655555556678899999999 78889999999999999998


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHh
Q 009622          232 GKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (530)
Q Consensus       232 ~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~  310 (530)
                      ..+.. ......++++.++.++.+++..+...++.++++++...+.....+.+.|+++.+..++.++++.++..++++++
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            75322 33445789999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHhCcHHHHHHHHhcCchhHH
Q 009622          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQAVIEANIIGPLVALLENAEFDIK  387 (530)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (530)
                      |++.+++.....+++.|+++.++.++.++ +..++.+|+|+|+|++.+   .++.+..+++.|+++.|++++...+.++.
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~  434 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  434 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            99999988888899999999999999998 999999999999999862   45678889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCC----------CHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHh
Q 009622          388 KEAAWAISNATSGG----------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  442 (530)
Q Consensus       388 ~~a~~aL~nl~~~~----------~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~  442 (530)
                      ..++.+|.++...+          .......+.+.|+++.|..+..+++.++...|...|..++.
T Consensus       435 ~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~  499 (503)
T d1wa5b_         435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG  499 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            99999999987422          12344566788999999888889999999998888776653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.2e-32  Score=270.39  Aligned_cols=366  Identities=25%  Similarity=0.375  Sum_probs=318.7

Q ss_pred             cCCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009622           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        72 ~~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      .+.+|.|++.|++ +++++|..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+++|++++.+++.
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchH
Confidence            3689999999975 56789999999999998763 456778889999999999999888 99999999999999998888


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHH
Q 009622          151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (530)
Q Consensus       151 ~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~  225 (530)
                      .+..+.+.|+++.++.++...+     ......++|++.+++.............++++.+..++ .+.+++++..++|+
T Consensus       133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~  211 (434)
T d1q1sc_         133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  211 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhh
Confidence            8999999999999999997643     34567789999999987765555555667888888888 78889999999999


Q ss_pred             hhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHH
Q 009622          226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (530)
Q Consensus       226 L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~  304 (530)
                      +.+++...+. .......+++|.++.++.+++.+++..+++++.+++...+.....+++.|+++.++.++.+.+..++..
T Consensus       212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~  291 (434)
T d1q1sc_         212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  291 (434)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHH
Confidence            9999987532 223345789999999999999999999999999999888887888889999999999999999999999


Q ss_pred             HHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCc
Q 009622          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAE  383 (530)
Q Consensus       305 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~  383 (530)
                      +++++++++.........+.+.|+++.++.++.++ ++.++..|+|+++|++. ++++.+..+.+.|+++.|+.++.+.+
T Consensus       292 a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         292 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  370 (434)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSC
T ss_pred             HHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCC
Confidence            99999999998888888888999999999999998 99999999999999987 57788888999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhc-----CCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622          384 FDIKKEAAWAISNATS-----GGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       384 ~~v~~~a~~aL~nl~~-----~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll  441 (530)
                      ++++..++++|.++..     ...+.....+.+.|+++.|-.+.++++++++..|...|.+.+
T Consensus       371 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         371 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999999999999974     223345566678899999988989999999999998887653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-30  Score=266.38  Aligned_cols=400  Identities=18%  Similarity=0.200  Sum_probs=342.4

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009622           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (530)
Q Consensus        73 ~~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (530)
                      +.++.++..|.+++++++..|+++|.+++... ......+.+.|++|.|+.++++++ +.++..++++|.+++..+.+.+
T Consensus       101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~  178 (529)
T d1jdha_         101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHH
Confidence            67999999999999999999999999998764 445566778999999999999988 9999999999999999888889


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..+...|+++.|+.++.. +...++..+++++.+++.+. ..+..+.+.|++++|+.++ .+.+..+...++|++.+++.
T Consensus       179 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~  256 (529)
T d1jdha_         179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhccc
Confidence            999999999999999965 55789999999999998755 4788889999999999999 77889999999999999986


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC--CCCchhHHHHHHHH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTV  309 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~~~~~a~~~L  309 (530)
                      ...  ......++++.|+.++.+++..++..++++|++++..++.....+.+.++++.++..+.  ++.+.++..+++++
T Consensus       257 ~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         257 AAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence            543  22334688999999999999999999999999999888888888889999999999884  45677889999999


Q ss_pred             hHhhcCCch---hhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCch--
Q 009622          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEF--  384 (530)
Q Consensus       310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--  384 (530)
                      ++++.....   ....+...+.++.++.++..+.+..++..+++++.|++.. +.....+.+.|+++.|++++.+.+.  
T Consensus       335 ~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~  413 (529)
T d1jdha_         335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHHH
Confidence            999976543   2334557899999999998874567889999999999875 4566778899999999999975533  


Q ss_pred             --------------------hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhh
Q 009622          385 --------------------DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       385 --------------------~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~  444 (530)
                                          ++...++.++.+++.  .+..+..+.+.|+++.|+++|.++++.++..++.+|.++....
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~  491 (529)
T d1jdha_         414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  491 (529)
T ss_dssp             C-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCh
Confidence                                456677778888876  4566777778899999999999999999999999999986443


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      +            ..+.+.+.|++..|.+|..++|+.++..|..+|.+.
T Consensus       492 ~------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         492 E------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             H------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             h------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            2            367889999999999999999999999999988653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-30  Score=263.18  Aligned_cols=403  Identities=17%  Similarity=0.161  Sum_probs=338.7

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        73 ~~l~~l~~~l~s-~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++.++..|.+ ++++.+..|+.+|.++...  .+....+++.|++|.|+.+|++++ ++++..|+++|.+++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            367899999975 6788999999999998643  566788899999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      +..+.+.|+++.|+.+|+++++.++..++++|.+++..++..+..+...|++++++.++..+....++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            88899999999999999999999999999999999988888888999999999999999767778899999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      ...........++++.|..++.+++..++..+++++.+++......   ....|+++.|+.++.+++..++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            7655555666889999999999999999999999999998654322   1224788999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCCH---HHHHHHHHhCcHHHHHHHHhcC-chhH
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNR---EQIQAVIEANIIGPLVALLENA-EFDI  386 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~i~~L~~ll~~~-~~~v  386 (530)
                      ++.+++.....+.+.++++.++..+... ..+.++..|+++|.+++....   .....+...+.++.|+.++..+ +..+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~  372 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence            9998888888888999999999988532 267899999999999997432   2344456789999999999876 4678


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCCh----------------------HHHHHHHHHHHHHHhhh
Q 009622          387 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP----------------------RIVTVCLEGLENILKVG  444 (530)
Q Consensus       387 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~----------------------~v~~~al~~l~~ll~~~  444 (530)
                      +..+++++.|++..  ++....+.+.|+++.|+++|...+.                      +++..+..++..+....
T Consensus       373 ~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~  450 (529)
T d1jdha_         373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCH
Confidence            88999999999885  3566778899999999999864433                      45555556665554332


Q ss_pred             hhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          445 EAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      .            -+..+.+.|+++.|..+..+++++++..|...+..+..
T Consensus       451 ~------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  489 (529)
T d1jdha_         451 H------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             H------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             H------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            2            25667789999999999999999999999999877643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-26  Score=229.14  Aligned_cols=367  Identities=18%  Similarity=0.194  Sum_probs=280.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhh
Q 009622          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (530)
Q Consensus       116 g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~  195 (530)
                      +.+|.|+++|++++ ++++..|+++|+++|.++++.+..+.+.|+||.|+++|++++++++..|+++|++|+.+.+..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998999999999999999999999999999999999999999998888999


Q ss_pred             hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhh----------------cCCChhH
Q 009622          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----------------HSNDDEV  259 (530)
Q Consensus       196 ~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll----------------~~~d~~v  259 (530)
                      .+.+.|+++.++.++....+..++..+++++.+++.......... ...++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-HHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHH-hcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            999999999999999777889999999999999998754333333 33334333322                3457889


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC------CchhHHHHHHHHhHhh--------------------
Q 009622          260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP------SPSVLIPALRTVGNIV--------------------  313 (530)
Q Consensus       260 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~~~~~a~~~L~nl~--------------------  313 (530)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+.+..                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999877666555555668888888887532      1111111111111100                    


Q ss_pred             ------------------------------cCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 009622          314 ------------------------------TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--  361 (530)
Q Consensus       314 ------------------------------~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  361 (530)
                                                    .........+...++++.+..++....++.++..+++++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          011112222334567788888887665788999999999999874322  


Q ss_pred             ---HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHH
Q 009622          362 ---QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTV  432 (530)
Q Consensus       362 ---~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~  432 (530)
                         ....+.+.++++.|+.++.+++++++..+++++.+++...  +....+ ..++++.++.+|..      .+.+++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               2233446789999999999999999999999999999843  444444 45678999998853      23568889


Q ss_pred             HHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCCC
Q 009622          433 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKLLETYWLDDE  498 (530)
Q Consensus       433 al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~il~~~~~~~~  498 (530)
                      ++.+|.++....+.           .+..+.+.||++.|..+.. ++++.+++.|..+|.+.|...+
T Consensus       397 a~~~L~~l~~~~~~-----------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHhcCCHH-----------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            99999999865433           4677888999999999865 5678999999999999987544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-24  Score=213.58  Aligned_cols=362  Identities=15%  Similarity=0.168  Sum_probs=268.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+|.+++.|++++++++..|+.+|.+++..+ +.....+.+.|++|.|+++|++++ +.++..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            6899999999999999999999999997653 567888899999999999999988 99999999999999988899999


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhh---------------cCCCchh
Q 009622          154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---------------NGQPKLS  217 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll---------------~~~~~~~  217 (530)
                      .+.+.|+++.|+.++.+ .++.++..++++|++++.+.. .+......+ ++.++..+               ....+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999999865 678899999999999998765 334434333 34443332               1345788


Q ss_pred             HHHHHHHHhhhhccCCCCCCh-hhhhchHHHHHHhhcCC------ChhHHHHHHHHHHHhccC-----------------
Q 009622          218 MLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSN------DDEVLTDACWALSYLSDG-----------------  273 (530)
Q Consensus       218 ~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~ll~~~------d~~v~~~a~~~l~~l~~~-----------------  273 (530)
                      ++..+++++.+++........ ....++++.++.++.+.      .......+...+......                 
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            999999999999877533222 22356778887776532      111111221111111000                 


Q ss_pred             ---------------------------------ChHHHHHHHHhCcHHHHHHhhCC-CCchhHHHHHHHHhHhhcCCchh
Q 009622          274 ---------------------------------TNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQ  319 (530)
Q Consensus       274 ---------------------------------~~~~~~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~  319 (530)
                                                       .......+...++++.++.++.. .++.+...+.+++.+++......
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                             00000111222455666666654 45677888899999998655432


Q ss_pred             -----hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC------chhHHH
Q 009622          320 -----TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA------EFDIKK  388 (530)
Q Consensus       320 -----~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~  388 (530)
                           ...+.+.|+++.|+.++.++ ++.++..+++++++++... .... .+..+.++.++.++...      +.+++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~-~~~~-~i~~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-LLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-GGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhCh-hHHH-HHHHhhHHHHHHHHhccccCcCCcHHHHH
Confidence                 23345789999999999998 9999999999999998753 3333 34456889999988643      357999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhh
Q 009622          389 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKV  443 (530)
Q Consensus       389 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~  443 (530)
                      .|+.+|.|++.. +++..+.+.+.|+++.|+.++.+. ++.++..|..+|.+|...
T Consensus       396 ~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            999999999976 557888889999999999998765 678999999999988644

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.5e-19  Score=163.49  Aligned_cols=194  Identities=14%  Similarity=0.138  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHh
Q 009622          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (530)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~l  209 (530)
                      .+.+..|+.+|.+++. +.++...+...|+++.++. ++.+++++++..|+++|++++.+++.++..+...|+++.|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6788999999999997 6788888999999999886 6788999999999999999999999899999999999999999


Q ss_pred             hcCCCchhHHHHHHHHhhhhccCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009622          210 LNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (530)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~  288 (530)
                      +..+.++.++..++|++++++.+.+. .......++++.|+.++.+.+..++..++++|.+++...++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            97677889999999999999988743 33445688999999999999999999999999999988888888899999999


Q ss_pred             HHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhh
Q 009622          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (530)
Q Consensus       289 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~  325 (530)
                      .|+.++.++++.++..|+++|++++..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999888776655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.9e-18  Score=156.39  Aligned_cols=230  Identities=17%  Similarity=0.157  Sum_probs=188.0

Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009622          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (530)
Q Consensus       254 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L  332 (530)
                      ..+.+.+..++.+|.+++... +....+...|+++.++. ++.++++.++..|+++|++++.+++.....+...|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~-d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            346678888999999999654 45566888899998875 7888999999999999999999888888888899999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009622          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  412 (530)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  412 (530)
                      +.++.+..++.++..++|+|++++.+++.....+...|+++.|+.++.+++..++..++++|.+++.. +++....+...
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99997654889999999999999999999899999999999999999999999999999999999875 45677888899


Q ss_pred             CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHh-hhhccHHHHHHH-----hcCCCHHHHHHH
Q 009622          413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI-DDAEGLEKIESL-----QTHDNAEIYEKS  486 (530)
Q Consensus       413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l-----~~~~~~~v~~~a  486 (530)
                      |+++.|+.+++++++.++..++++|.++....+....          ... .+.+....+..+     ......+..+.+
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~----------~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~  255 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR----------ECREPELGLEELLRHRCQLLQQHEEYQEELEFC  255 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH----------HHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHH----------HHHHhhhhHHHHHHHHHHhccchHHHHHHHHHH
Confidence            9999999999999999999999999999876544211          111 112222222222     123445566888


Q ss_pred             HHHHHHhCC
Q 009622          487 VKLLETYWL  495 (530)
Q Consensus       487 ~~il~~~~~  495 (530)
                      ..|++++|.
T Consensus       256 ~~ll~~~~~  264 (264)
T d1xqra1         256 EKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            899998884

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.4e-16  Score=160.63  Aligned_cols=378  Identities=11%  Similarity=0.135  Sum_probs=265.7

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +.+...++++++.++..|+.++..++...  +.  ......++|.+..++.+.+ ..++..++.+|++++.....   ..
T Consensus       206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~--~~--~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~~~---~~  277 (588)
T d1b3ua_         206 PMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EI  277 (588)
T ss_dssp             HHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HH
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHhhccC--CH--HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHHhhh---hh
Confidence            33444444555555555555555554331  11  1112336777778877776 78888888888888752111   12


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCC
Q 009622          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (530)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~  234 (530)
                      ....+++.+..++.+.+++++..++..++.++..-. .......-...++.+...+ .+.+..++..++.++..++..-.
T Consensus       278 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~~  356 (588)
T d1b3ua_         278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG  356 (588)
T ss_dssp             HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC
T ss_pred             hhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhccc
Confidence            234568889999999999999999999998875422 2222222334666677777 77888999999998888764321


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhc
Q 009622          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (530)
Q Consensus       235 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~  314 (530)
                        .......++|.+..++.+++++++..++.++..+...-..  . .....+++.+..++.+.+|.++..++.+++.++.
T Consensus       357 --~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~  431 (588)
T d1b3ua_         357 --KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             --HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence              1234466789999999999999999988887776532211  1 1123567889999999999999999999998875


Q ss_pred             CCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHH
Q 009622          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEAAWA  393 (530)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  393 (530)
                      ....   ..+...+.+.+..++.++ ...+|..|+++++.++.. .++    .....+++.+..++.++++.+|..++.+
T Consensus       432 ~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~~  503 (588)
T d1b3ua_         432 QLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFC  503 (588)
T ss_dssp             HHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             HcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            3211   112334567788888888 899999999999999762 222    2234588999999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHH
Q 009622          394 ISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES  473 (530)
Q Consensus       394 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  473 (530)
                      +..+......+    .....+++.|..+++++.+.|+..++++|..+....+...         +.     ......|..
T Consensus       504 l~~l~~~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---------~~-----~~i~~~l~~  565 (588)
T d1b3ua_         504 INVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---------LQ-----SEVKPILEK  565 (588)
T ss_dssp             HHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---------HH-----HHHHHHHHH
T ss_pred             HHHHHHHcChH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---------HH-----HHHHHHHHH
Confidence            99887643222    2344689999999999999999999999999876543211         12     223577888


Q ss_pred             HhcCCCHHHHHHHHHHHHHh
Q 009622          474 LQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       474 l~~~~~~~v~~~a~~il~~~  493 (530)
                      |++++|.+|+..|.+.++..
T Consensus       566 L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         566 LTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HTTCSSHHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.1e-14  Score=149.85  Aligned_cols=381  Identities=12%  Similarity=0.084  Sum_probs=279.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.+.+.+.+.++.++..++..+..++..-..    ......++|.+..++++++ +.+|..|+.++..++...+..  
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~--  237 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH--
Confidence            356666677888999999999999998865321    2234567888889888887 899999999999988633221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                       .....+++.+..++.++++.++..++.+|++++...+   .......+++.+..++ .+.+.+++..+++++..++..-
T Consensus       238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHH
Confidence             1112367889999999999999999999999874322   1223344677788888 7888999999999999998765


Q ss_pred             CCCC--hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhH
Q 009622          234 PQPP--FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (530)
Q Consensus       234 ~~~~--~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~n  311 (530)
                      ....  ......++|.+...+.+.++.++..++.++..++..-..  . .....+++.+...+.+.++.++..++..++.
T Consensus       313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            3322  234467889999999899999999988888776532111  1 1123578889999999999999999888877


Q ss_pred             hhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHhCcHHHHHHHHhcCchhHHHHH
Q 009622          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQAVIEANIIGPLVALLENAEFDIKKEA  390 (530)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (530)
                      +...-..   .-+...+++.+..++.+. ++.+|..++.++..++.. ..+.    +...+.+.+..++.++...||..|
T Consensus       390 ~~~~~~~---~~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A  461 (588)
T d1b3ua_         390 VNEVIGI---RQLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCH---HHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHhhcch---hhhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHH
Confidence            7643221   112235678888999888 999999999999988752 1111    122356777788888889999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHH
Q 009622          391 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK  470 (530)
Q Consensus       391 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (530)
                      +++|+.++....++.    ....+++.+..++.+++...+..++.++..+....+...         +.     ...+..
T Consensus       462 ~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---------~~-----~~ilp~  523 (588)
T d1b3ua_         462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---------TT-----KHMLPT  523 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHTHHH
T ss_pred             HHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH---------HH-----HHHHHH
Confidence            999999987544332    233578899999999999999999999998887554311         11     234677


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCC
Q 009622          471 IESLQTHDNAEIYEKSVKLLETYWL  495 (530)
Q Consensus       471 l~~l~~~~~~~v~~~a~~il~~~~~  495 (530)
                      +..+..++.+.|+..+.+.+..++.
T Consensus       524 ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         524 VLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            8888888889998888888877654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.4e-12  Score=138.84  Aligned_cols=360  Identities=11%  Similarity=0.122  Sum_probs=223.4

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  155 (530)
                      +.+.+.+.++++..+..|+.++..++.+. .......+ ..+++.++..+.+++ +.+|..|+|+|+.++.........-
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            44445667889999999999999876432 11111111 235788889998888 9999999999999876221111111


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc-hhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCC-
Q 009622          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (530)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~-  233 (530)
                      .-..+++.++..+.++++.++..|+++|.+++.... .....+  ..+++.++..+ ...+......+..++..++... 
T Consensus       475 ~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~~~  551 (888)
T d1qbkb_         475 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVG  551 (888)
T ss_dssp             HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHG
T ss_pred             hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhhh
Confidence            224678889999988999999999999999984321 111111  12456666666 4444455555566666655422 


Q ss_pred             -CCCChhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccC----ChHHHHHHHHhCcHHHHHH--------hhC---
Q 009622          234 -PQPPFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDG----TNDKIQAVIEAGVFPRLAE--------FLM---  295 (530)
Q Consensus       234 -~~~~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~----~~~~~~~~~~~~~i~~L~~--------lL~---  295 (530)
                       ..........++|.+......  .+......++.+++.++..    .......+.. .++..+..        ...   
T Consensus       552 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~  630 (888)
T d1qbkb_         552 HHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQ  630 (888)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhccccc
Confidence             111223345566666655442  2222333444555554321    1111111111 11111111        111   


Q ss_pred             --CCCchhHHHHHHHHhHhhcCCchhhHHH-hhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcH
Q 009622          296 --HPSPSVLIPALRTVGNIVTGDDMQTQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANII  372 (530)
Q Consensus       296 --~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  372 (530)
                        ..+..+...++.+++.++.+-......+ ....+++.+...+.+. ++.+|..|..+++.++...+......++ .++
T Consensus       631 ~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~  708 (888)
T d1qbkb_         631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIA-DFM  708 (888)
T ss_dssp             SCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence              1245567777778888775444333333 3457888899999888 9999999999999998755554444333 377


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCC--hHHHHHHHHHHHHHHhhhhh
Q 009622          373 GPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD--PRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       373 ~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~al~~l~~ll~~~~~  446 (530)
                      +.++..+.++.+.++..|+|+++.++.....+...++  ..+++.|+..++.++  ..+..+++.+|+.+....+.
T Consensus       709 ~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~--~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         709 PILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             HHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS--HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH
Confidence            7888888888889999999999999875443332222  246778888887543  45889999999999866544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.9e-11  Score=133.52  Aligned_cols=406  Identities=11%  Similarity=0.096  Sum_probs=265.1

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .+..+++.+.+.|++.|+.|+..|.+.+..... ..+.-....+++.|+++|.+++ +++|..|+.||+.++..-++...
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~-~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhccc-ccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH
Confidence            357889999999999999999999998865321 1111112346889999999888 99999999999999885443221


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCch------hhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhh
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR------CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~------~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~  227 (530)
                          ..+++.|+..+.+++...+..+..+|..+...-+.      .... .....++.+...+....+..++..++.++.
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~v~~~al~~l~  156 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  156 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                13567888888888888888888888776532211      1111 111244455555556667888999999999


Q ss_pred             hhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCCchhHHHHH
Q 009622          228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPAL  306 (530)
Q Consensus       228 ~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~a~  306 (530)
                      .+....+..-......+++.+...+.+++..++..++.+++.++......   . -..+++.++..+. +.+...+..++
T Consensus       157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~  232 (1207)
T d1u6gc_         157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYI  232 (1207)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHH
Confidence            88776554444445678888999999999999999999999998654321   1 1245566665553 45566777888


Q ss_pred             HHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH----HHHHHHh-------------
Q 009622          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ----IQAVIEA-------------  369 (530)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~-------------  369 (530)
                      .+++.++...+...... -..+++.+...+... ++.+|..++.++..++...+..    ...++..             
T Consensus       233 ~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~  310 (1207)
T d1u6gc_         233 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNY  310 (1207)
T ss_dssp             HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhh
Confidence            89998887554432111 246789999999988 8999999999998887643321    1111100             


Q ss_pred             -------------------CcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHH
Q 009622          370 -------------------NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV  430 (530)
Q Consensus       370 -------------------~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~  430 (530)
                                         ...+.......+..+.+|..++.+|..++.... +....+ -..+++.|...+...++.++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~-~~~~~~~L~~~l~d~~~~vr  388 (1207)
T d1u6gc_         311 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVK  388 (1207)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHH
T ss_pred             hhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHH-HHHHHHHHHHHhcCCchHHH
Confidence                               000111111223357899999999999987543 333332 24678999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhcCC-----CCchhhHHHhhh--hccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          431 TVCLEGLENILKVGEAEKNLGN-----TDVNVFTQMIDD--AEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                      ..++.++..++...........     ...+.....+..  ...++.+.....+.+..++..+..++..+.
T Consensus       389 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~  459 (1207)
T d1u6gc_         389 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV  459 (1207)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            9999999888764322110000     000001111111  234566777778889999888888877654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-11  Score=132.14  Aligned_cols=400  Identities=15%  Similarity=0.161  Sum_probs=244.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      .++.++..+.++++.++..|++++.+++.......... .-..+++.++..+.+++ +.++..|+++|.+++........
T Consensus       437 li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~~-~~V~~~a~~al~~l~~~~~~~l~  514 (888)
T d1qbkb_         437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEACTELV  514 (888)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSSC-HHHHHHHHHHHHHHHHHHTTSSG
T ss_pred             hhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhhhhh
Confidence            45677788889999999999999998764321122222 23457888898888888 99999999999998862221111


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhcc
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~  231 (530)
                      ... ..+++.++..+.......+..+..+++.++... +.....-.....++.++..... ..+......++.+++.++.
T Consensus       515 p~~-~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~  593 (888)
T d1qbkb_         515 PYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT  593 (888)
T ss_dssp             GGH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHH
T ss_pred             hHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            111 134567777787777777766677777665311 1111111111234444444421 1122233345556666554


Q ss_pred             CCCCCChhhhhchHHHHHHhh-----------------cCCChhHHHHHHHHHHHhccCChHHH-HHHHHhCcHHHHHHh
Q 009622          232 GKPQPPFDQVSPALPALAHLI-----------------HSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVFPRLAEF  293 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll-----------------~~~d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~L~~l  293 (530)
                      ............+.+.+...+                 ...+.++...++.++..++..-.... ..+....+++.+...
T Consensus       594 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~  673 (888)
T d1qbkb_         594 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC  673 (888)
T ss_dssp             HSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHH
T ss_pred             HhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHH
Confidence            432222222222222222221                 12355666777777766654322222 223344678889999


Q ss_pred             hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009622          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (530)
Q Consensus       294 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (530)
                      +.+.++.++..|+.+++.++..........++ .+++.+...|.++ ...++..|+|+++.++....+.....+. .+++
T Consensus       674 l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~  750 (888)
T d1qbkb_         674 MQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLH  750 (888)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHH
Confidence            99999999999999999998766544332222 4677888888877 8899999999999998744343333332 4788


Q ss_pred             HHHHHHhcCc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHHHHHHHHHHhhhhhhhhc
Q 009622          374 PLVALLENAE--FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNL  450 (530)
Q Consensus       374 ~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~al~~l~~ll~~~~~~~~~  450 (530)
                      .|+.++++++  ..++.+++.+|+.++... ++.....+ ..+++.++..|.. .|..-...+..++..++...+.... 
T Consensus       751 ~L~~il~~~~~~~~v~~n~~~~lgrl~~~~-p~~~~~~l-~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~-  827 (888)
T d1qbkb_         751 QLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEVAPML-QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI-  827 (888)
T ss_dssp             HHHHHHTCTTCCHHHHHHHHHHHHHHHHHC-HHHHGGGG-GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG-
T ss_pred             HHHHHHcCCCccHHHHHHHHHHHHHHHHHC-HHHHHhhH-HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH-
Confidence            9999998763  559999999999998763 44332212 2356777776653 4555677888999999877654221 


Q ss_pred             CCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009622          451 GNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  494 (530)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~~  494 (530)
                           ..+.. |     ++.+... ..+.++++.....+|..|-
T Consensus       828 -----~~l~~-~-----~~~i~~~-~~~~~~~~~~~~~~l~~~~  859 (888)
T d1qbkb_         828 -----QDFIF-F-----CDAVASW-INPKDDLRDMFCKILHGFK  859 (888)
T ss_dssp             -----GGHHH-H-----HHHHTTC-SSCCHHHHHHHHHHHHHHH
T ss_pred             -----HHHHH-H-----HHHHHhc-CCCCHHHHHHHHHHHHHHH
Confidence                 11111 1     1222222 2356888888888887764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.9e-10  Score=105.24  Aligned_cols=253  Identities=15%  Similarity=0.099  Sum_probs=189.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009622           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        74 ~l~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      ..+.|++.|.++++.++..|+..|..+..            ...++.|++++++++ +.++..|+++|+.+....... .
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~~-~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCE-D   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTH-H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccc-c
Confidence            56789999999999999999999987732            125899999999988 999999999999987632221 1


Q ss_pred             HHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccC
Q 009622          154 VVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (530)
Q Consensus       154 ~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~  232 (530)
                      .+     ++.+. .+++++++.++..++.+|++++...+....     ..++.+...+ .+.+..++..++.++..+.. 
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence            11     23333 346778999999999999999865543222     2455666666 77788899888888876543 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHh
Q 009622          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (530)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl  312 (530)
                               ...++.+..++...+..+...+..++..+......         ..+.+...+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence                     34567888888888888888888888877655432         234567778888999999999998876


Q ss_pred             hcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcC-chhHHHHHH
Q 009622          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENA-EFDIKKEAA  391 (530)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~  391 (530)
                      ..           ..+++.|+..+.+   +.+|..++++|+.+.  +         .+.++.|..++... +.+|+..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d---~~vr~~a~~aL~~ig--~---------~~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKK---NTVYDDIIEAAGELG--D---------KTLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTS---SSCCHHHHHHHHHHC--C---------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCC---hHHHHHHHHHHHHcC--C---------HHHHHHHHHHHccCCCHHHHHHHH
Confidence            42           3457888888874   458999999999884  2         24788898888765 788999998


Q ss_pred             HHHH
Q 009622          392 WAIS  395 (530)
Q Consensus       392 ~aL~  395 (530)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.4e-10  Score=106.14  Aligned_cols=256  Identities=15%  Similarity=0.133  Sum_probs=194.7

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh
Q 009622          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (530)
Q Consensus       115 ~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~  194 (530)
                      ....+.|+++|++++ +.++..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            456778999999988 9999999999998754  2         2478999999999999999999999998643331 1


Q ss_pred             hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 009622          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (530)
Q Consensus       195 ~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~  274 (530)
                      +.     .++.+...+..++++.++..++.+|..++...+    .....+++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            11     344556655578899999999999999986532    2234567788888888899999888888876532  


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       275 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                               ...++.+..++...++.++..+..+++.+......         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     25567788888888988999888888877654432         345567777777 88999999999887


Q ss_pred             HhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC-CChHHHHHH
Q 009622          355 ITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVC  433 (530)
Q Consensus       355 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~a  433 (530)
                      +..           ...++.|++.+.+  +.+|..++++|+.+..            ..+++.|..++.. +|..++..+
T Consensus       215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHH
Confidence            642           2467888888874  4689999999998753            1467888887765 577899888


Q ss_pred             HHHHH
Q 009622          434 LEGLE  438 (530)
Q Consensus       434 l~~l~  438 (530)
                      +++|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2e-10  Score=113.07  Aligned_cols=282  Identities=14%  Similarity=0.101  Sum_probs=181.0

Q ss_pred             CChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhhccCCC-
Q 009622          159 GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKP-  234 (530)
Q Consensus       159 g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L~~~~~-  234 (530)
                      +.++.++..+.+  .+...+..++.+++.++.........-.....++.++..+.. +.+..++..++.++..+..... 
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            345566666544  445667777778777764332211111112245666666643 3467899999999998887542 


Q ss_pred             -CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhh
Q 009622          235 -QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (530)
Q Consensus       235 -~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~  313 (530)
                       ...........+.+..++.+++++++..++.++..++..........+...+...+...+.+.+..++..++..+..++
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~  286 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  286 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence             1222333456677888888899999999999999987654433222222233445556677788888999998888876


Q ss_pred             cCCchhh--------------------HHHhhcCchHHHHHhhcCC------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009622          314 TGDDMQT--------------------QCVIEYQALPCLLNLLSGN------YKKSIKKEACWTVSNITAGNREQIQAVI  367 (530)
Q Consensus       314 ~~~~~~~--------------------~~~~~~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~  367 (530)
                      .......                    .......+.+.+...+...      .+..++..|..++..++...++..   +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~  363 (458)
T d1ibrb_         287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V  363 (458)
T ss_dssp             HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---H
T ss_pred             HHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---h
Confidence            4221110                    0011123345555554321      134688889999988876322221   1


Q ss_pred             HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhh
Q 009622          368 EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  445 (530)
Q Consensus       368 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~  445 (530)
                       ..+++.+...+.++++.+|..|+.+|+.++.+...+..+.. -..+++.+..++.++++.|+..|+++|+++.....
T Consensus       364 -~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         364 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             -hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence             13567777888889999999999999999875432222211 13568899999999999999999999999987654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=1.1e-07  Score=100.62  Aligned_cols=356  Identities=13%  Similarity=0.077  Sum_probs=225.5

Q ss_pred             HHHH-HhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHH
Q 009622           76 PVMV-AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (530)
Q Consensus        76 ~~l~-~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~  153 (530)
                      ..++ ..+.++|+.++..|-..|.++....  +       .+.+..|.+.+.+.+ ++.+|..|+..|.|..........
T Consensus         7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~   77 (861)
T d2bpta1           7 AQLLENSILSPDQNIRLTSETQLKKLSNDN--F-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKT   77 (861)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC--H-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhh
Confidence            4444 4467999999999999998876431  1       235677888886543 478899999888887753322111


Q ss_pred             HH------------HhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCC-chhhhhHhhcCChHHHHHhhcCCCchhHHH
Q 009622          154 VV------------IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLR  220 (530)
Q Consensus       154 ~~------------~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~  220 (530)
                      ..            ....+-..++..+.++++.++..++.+++.++... |..+.    ...++.|+..+..+.+...+.
T Consensus        78 ~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~~~~~~  153 (861)
T d2bpta1          78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQPENVKR  153 (861)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSCHHHHH
T ss_pred             hhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCcHHHHH
Confidence            10            00122356777888889999999999999987321 11000    124666777774455667788


Q ss_pred             HHHHHhhhhccCCCCCCh---hhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhh
Q 009622          221 NATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFL  294 (530)
Q Consensus       221 ~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~ll~~~--d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~lL  294 (530)
                      .++.++..++........   .....+++.+...+.+.  +..++..++.++.++...-..... ......+++.+...+
T Consensus       154 ~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  233 (861)
T d2bpta1         154 ASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT  233 (861)
T ss_dssp             HHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh
Confidence            899999999876533222   22344555555555433  578899999999888765433211 112234667788889


Q ss_pred             CCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHH------------
Q 009622          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ------------  362 (530)
Q Consensus       295 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~------------  362 (530)
                      .++++.++..++.++..++...+......+..-+...+.....+. ++.++..++..+..++......            
T Consensus       234 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  312 (861)
T d2bpta1         234 QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPL  312 (861)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999999875544333322222223333444444 6777777766665543210000            


Q ss_pred             ---------HHH------------------------------------HHHhCcHHHHH----HHHhcCchhHHHHHHHH
Q 009622          363 ---------IQA------------------------------------VIEANIIGPLV----ALLENAEFDIKKEAAWA  393 (530)
Q Consensus       363 ---------~~~------------------------------------l~~~~~i~~L~----~ll~~~~~~v~~~a~~a  393 (530)
                               ...                                    .....+++.+.    ..+.+.++..+..++.+
T Consensus       313 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  392 (861)
T d2bpta1         313 QSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMA  392 (861)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHH
Confidence                     000                                    00112233333    23345577888889999


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          394 ISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       394 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      ++.++............ ..+++.+...+.++++.++..+++++..+......
T Consensus       393 l~~i~~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  444 (861)
T d2bpta1         393 FGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE  444 (861)
T ss_dssp             HHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHhhcchhhHHHHH-HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch
Confidence            99998876655544433 24688899999999999999999999999876543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.9e-09  Score=105.88  Aligned_cols=296  Identities=18%  Similarity=0.193  Sum_probs=183.7

Q ss_pred             CHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChh
Q 009622           74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE  150 (530)
Q Consensus        74 ~l~~l~~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~  150 (530)
                      .++.++..+.+  .++..+..++.++..+.... .+.........+++.++..+.+.+ +..++..|+.++..+......
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            56677777765  34556667778877766432 111111112335778888887643 478999999999999874433


Q ss_pred             hHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       151 ~~~-~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      ... ........+.+...+.+++++++..++.+|..++...+..-...+. ..+..++.....+.+..++..++.++..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            221 1122235677778888899999999999999998655432111111 12333333333667788888888888777


Q ss_pred             ccCC-----------------CCCCh----hhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHH
Q 009622          230 CRGK-----------------PQPPF----DQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV  281 (530)
Q Consensus       230 ~~~~-----------------~~~~~----~~~~~~l~~L~~ll~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~  281 (530)
                      +...                 .....    .....+.|.+...+..       .+..++..+..++..++....+.   +
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~  362 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  362 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---H
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh---h
Confidence            5321                 00011    1123344555554432       12347777777777776433221   1


Q ss_pred             HHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009622          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       282 ~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      . ..+++.+...+.+++|.++..|+.+|+.++.+.....-...-..+++.++..+.++ ++.||..|+|+|+.++..-++
T Consensus       363 ~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         363 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHGGG
T ss_pred             h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhc
Confidence            1 14567788889999999999999999999976532211112346899999999998 999999999999999753221


Q ss_pred             HHHHHHHhCcHHHHHHHH
Q 009622          362 QIQAVIEANIIGPLVALL  379 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll  379 (530)
                      .   ......++.++..|
T Consensus       441 ~---~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         441 A---AINDVYLAPLLQCL  455 (458)
T ss_dssp             G---CCSTTTHHHHHHHH
T ss_pred             c---cchhhHHHHHHHHH
Confidence            1   11123466666554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.8e-09  Score=114.62  Aligned_cols=397  Identities=11%  Similarity=0.092  Sum_probs=238.1

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCC----CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIER----SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~----~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (530)
                      +.++..+.+++...+..+..+|+.+...-.    .......+-..+++.+...+....++.++..|+.+|..+....+..
T Consensus        86 ~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~  165 (1207)
T d1u6gc_          86 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL  165 (1207)
T ss_dssp             HHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            344444445555555555555554433210    0111111122345555665655555889999999998887632211


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhcc
Q 009622          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (530)
Q Consensus       152 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~  231 (530)
                      ..... ..+++.++..+.++...+|..|+.+|+.++...+..    .-...+..++..+..+.+...++.++.++..+++
T Consensus       166 l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~  240 (1207)
T d1u6gc_         166 LVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR  240 (1207)
T ss_dssp             CTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred             hHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            11000 124677778888899999999999999998654421    1123567777777556666677778888888887


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-------------------
Q 009622          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-------------------  292 (530)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-------------------  292 (530)
                      ..+..-......++|.+...+..++++++..++.++..+....+........ .+++.+..                   
T Consensus       241 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~  319 (1207)
T d1u6gc_         241 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENA  319 (1207)
T ss_dssp             HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC--------------
T ss_pred             HcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhh
Confidence            6544334456788999999999999999999998888876543321111110 11111111                   


Q ss_pred             ------------------hhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009622          293 ------------------FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (530)
Q Consensus       293 ------------------lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (530)
                                        ......|.++..++.+++.++...++.....+ ..+++.++..+.+. ++.+|..+..++..
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~~  397 (1207)
T d1u6gc_         320 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLS  397 (1207)
T ss_dssp             ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHH
T ss_pred             hhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence                              12234578999999999999877665544333 46889999999887 88999999988887


Q ss_pred             HhcCC---HH-------------HHHHHH--HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 009622          355 ITAGN---RE-------------QIQAVI--EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK  416 (530)
Q Consensus       355 l~~~~---~~-------------~~~~l~--~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~  416 (530)
                      +....   ..             ....+.  -..+++.+...+.+.+..++..+..++..++.........++  ..+++
T Consensus       398 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~~~~  475 (1207)
T d1u6gc_         398 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVP  475 (1207)
T ss_dssp             HHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHH
T ss_pred             HHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhh--HhhHH
Confidence            76410   00             000111  123567777788888999999999999988753221111111  12355


Q ss_pred             HHHhccCCC--ChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622          417 PLCDLLVCP--DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       417 ~L~~lL~~~--~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      .+...+...  ...++..++.++..++.......         +...+  ......+.....++...+...|...+..+
T Consensus       476 ~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~---------~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~l  543 (1207)
T d1u6gc_         476 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV---------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQL  543 (1207)
T ss_dssp             HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG---------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHhccHHH---------HHHHH--HhhhhhHHHHHccccHHHHHHHHHHHHHH
Confidence            566666543  44577778888888876543211         12222  12244555556677777777666655543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=8.9e-09  Score=109.42  Aligned_cols=391  Identities=11%  Similarity=0.128  Sum_probs=225.2

Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009622           80 AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (530)
Q Consensus        80 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g  159 (530)
                      ..+.+.++..+..|+..+..+.... ......-.-..+++.++..+.+++ +.++..++|+++.++......   +....
T Consensus       376 ~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~~~~  450 (861)
T d2bpta1         376 QNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAES---IDPQQ  450 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGG---SCTTT
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhchh---hhhHH
Confidence            3455788889999999998887543 222222222347889999999888 999999999999988632211   11122


Q ss_pred             ChHH----HHHhhCCCCHHHHHHHHHHHHhhhCCC----c-hhhhhHhhcCChHHHHHhhc-CCCchhHHHHHHHHhhhh
Q 009622          160 AVPI----FVKLLYSPSDDVREQAVWALGNIAGDS----P-RCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       160 ~i~~----L~~lL~~~~~~~~~~a~~~L~nl~~~~----~-~~~~~i~~~~~i~~Ll~ll~-~~~~~~~~~~a~~~L~~L  229 (530)
                      .++.    +...+. .++.+...+++++..++...    . ......  ...+..++.... ...+..++..+..++..+
T Consensus       451 ~~~~ll~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~  527 (861)
T d2bpta1         451 HLPGVVQACLIGLQ-DHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTM  527 (861)
T ss_dssp             THHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhccc-cChHHHHHHHHHHHHHHHHhhhcccchhhHHH--hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            3333    333333 56778888888888776321    1 111111  113444555443 344667888888888888


Q ss_pred             ccCCCCCChhhhhchHHHHHHhh----cCCC-----------hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009622          230 CRGKPQPPFDQVSPALPALAHLI----HSND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll----~~~d-----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL  294 (530)
                      ....+.........+.+.+...+    ....           ..++..++.++..+............ ..+++.+...+
T Consensus       528 i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l  606 (861)
T d2bpta1         528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLL  606 (861)
T ss_dssp             HHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhc
Confidence            77654333333333444433333    2111           12333344444444322221111111 13456666666


Q ss_pred             CCC-CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009622          295 MHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (530)
Q Consensus       295 ~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (530)
                      ... +..++..++.+++.++..........+ ..++|.+...+.+. ++.++..|+.+++.++............ .+++
T Consensus       607 ~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l-~~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i~~  683 (861)
T d2bpta1         607 EKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AMMN  683 (861)
T ss_dssp             HSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HHHH
T ss_pred             ccCCchhHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HHHH
Confidence            554 466888899999998865444333322 35788999999988 8899999999999998754444433333 4788


Q ss_pred             HHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCC----Ch-------HHHHHHHHHHHHH
Q 009622          374 PLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP----DP-------RIVTVCLEGLENI  440 (530)
Q Consensus       374 ~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~----~~-------~v~~~al~~l~~l  440 (530)
                      .|++.+.++  +..++..++.+|+.++.........++-  .+++.+...+...    +.       .++..++.++..+
T Consensus       684 ~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i  761 (861)
T d2bpta1         684 VLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGI  761 (861)
T ss_dssp             HHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            888888765  5689999999999988643333333322  2344554444322    21       3566677777766


Q ss_pred             HhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh----cCCCHHHHHHHHHHHHHh
Q 009622          441 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ----THDNAEIYEKSVKLLETY  493 (530)
Q Consensus       441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~~v~~~a~~il~~~  493 (530)
                      +........    ...++...+     ++.+..+.    .+.+.++...|..++-.+
T Consensus       762 ~~~~~~~~~----~~~p~~~~i-----~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l  809 (861)
T d2bpta1         762 VAGLHDKPE----ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDI  809 (861)
T ss_dssp             HHHTTTCHH----HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHH----HHHHHHHHH-----HHHHHHHHhCCccCCCHHHHHHHHHHHHHH
Confidence            653221110    112233322     22333332    346777777777776543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.6e-07  Score=97.02  Aligned_cols=386  Identities=13%  Similarity=0.080  Sum_probs=239.8

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCCcHHH----------HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-h-hhH
Q 009622           85 NDSGVQYECTTQFRKLLSIERSPPIEE----------VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-S-EHT  152 (530)
Q Consensus        85 ~~~~~~~~a~~~l~~l~s~~~~~~~~~----------~~~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~-~-~~~  152 (530)
                      .+..++..|+..|++.+..........          -....+...+++.+.+++  .++..++.+++.++... + ...
T Consensus        49 ~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~i~~i~~~~~p~~~W  126 (876)
T d1qgra_          49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQCVAGIACAEIPVNQW  126 (876)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHHHHHHHHHHGGGTCC
T ss_pred             CCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHHCCcccc
Confidence            346788889999998886531111111          123345667788887765  34455677777777621 1 001


Q ss_pred             HHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcC-CCchhHHHHHHHHhhhh
Q 009622          153 KVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNF  229 (530)
Q Consensus       153 ~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~-~~~~~~~~~a~~~L~~L  229 (530)
                           .++++.|++.+.+  .+..++..++.+|+.++.+-....-.-....+++.++..+.. +.+..++..++.++.++
T Consensus       127 -----peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~  201 (876)
T d1qgra_         127 -----PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS  201 (876)
T ss_dssp             -----TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHH
Confidence                 2568888888865  346788899999999975332111111112356667777643 34678888888888877


Q ss_pred             ccCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHH
Q 009622          230 CRGKP--QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (530)
Q Consensus       230 ~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~  307 (530)
                      .....  .........+++.+...+.+++++++..++.++..+.....+.....+...+...+...+.+....++..++.
T Consensus       202 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  281 (876)
T d1qgra_         202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE  281 (876)
T ss_dssp             GGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            65431  1112223446677778888889999999999999988665544444444456666777788888888888888


Q ss_pred             HHhHhhcCCchhh--------------------HHHhhcCchHHHHHhhcCC------CchhHHHHHHHHHHHHhcCCHH
Q 009622          308 TVGNIVTGDDMQT--------------------QCVIEYQALPCLLNLLSGN------YKKSIKKEACWTVSNITAGNRE  361 (530)
Q Consensus       308 ~L~nl~~~~~~~~--------------------~~~~~~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~  361 (530)
                      .+..++.......                    .......+++.+...+...      .+..++..|..++..++...+.
T Consensus       282 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~  361 (876)
T d1qgra_         282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh
Confidence            7777764221110                    0011123344555554322      1335788888888877653222


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622          362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll  441 (530)
                      .+   + ..+++.+...+.++++..+..++.+++.+..+.......... ..+++.+...+.++++.++..+++++..+.
T Consensus       362 ~~---~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~  436 (876)
T d1qgra_         362 DI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  436 (876)
T ss_dssp             GG---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hh---h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHH
Confidence            11   1 123455666677788999999999999998876655544432 346788889999999999999999999998


Q ss_pred             hhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622          442 KVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      +.......     ...+...     .+..+.... ++++.+...+...+..+
T Consensus       437 ~~~~~~~~-----~~~~~~~-----~~~~l~~~l-~~~~~v~~~~~~~l~~l  477 (876)
T d1qgra_         437 ELLPEAAI-----NDVYLAP-----LLQCLIEGL-SAEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HHCGGGTS-----STTTHHH-----HHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred             HHcchhhh-----hHHHhhh-----HHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence            76543221     0011111     123333332 45788888877766654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.8e-08  Score=107.35  Aligned_cols=356  Identities=13%  Similarity=0.084  Sum_probs=216.3

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCC-hhhHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGT-SEHTK  153 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~-~~~~~  153 (530)
                      ..++..+.+++. .+..++.++..++..+ -+.-.+   .+++|.|++.+.+++ .+.++..++.+|..++... ++...
T Consensus        93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~-~p~~~W---peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~  167 (876)
T d1qgra_          93 NYVLHTLGTETY-RPSSASQCVAGIACAE-IPVNQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ  167 (876)
T ss_dssp             HHHHHHTTTCCS-SSCHHHHHHHHHHHHH-GGGTCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG
T ss_pred             HHHHHHhcCCcH-HHHHHHHHHHHHHHHH-CCcccc---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            456666666554 3445666777666542 111011   357889999887654 4678888999999987632 22111


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHhhhCCCchhhh-hHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhc
Q 009622          154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~-~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~  230 (530)
                      .. ...+++.+++.+.+  ++..++..++.++.+........-. .....-+++.+...+ .++++.++..++.++..++
T Consensus       168 ~~-~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l~  245 (876)
T d1qgra_         168 DK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIM  245 (876)
T ss_dssp             GG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence            11 12457788888865  4578999999999887654332111 111111344445555 7788999999999999998


Q ss_pred             cCCCCCChhhh-hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH--------------------HHHHhCcHHH
Q 009622          231 RGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ--------------------AVIEAGVFPR  289 (530)
Q Consensus       231 ~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~--------------------~~~~~~~i~~  289 (530)
                      ...+....... ..+.+.+...+.+.++++...++..+..++........                    ......+++.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (876)
T d1qgra_         246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (876)
T ss_dssp             HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            76543333322 34555666777777888877777666665532111110                    0111133444


Q ss_pred             HHHhhCC-------CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-HH
Q 009622          290 LAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-RE  361 (530)
Q Consensus       290 L~~lL~~-------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~  361 (530)
                      +...+..       .++.++..|..++..++.......   + ..+++.+...+.+. +...|..+++.++.++.+. ..
T Consensus       326 l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~  400 (876)
T d1qgra_         326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPS  400 (876)
T ss_dssp             HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHH
T ss_pred             hHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---h-hhhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHH
Confidence            4444433       234577777777777765333221   1 12455666777777 8899999999999998753 34


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHHHHH
Q 009622          362 QIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  441 (530)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~~ll  441 (530)
                      ...... ..+++.++..+.++++.|+..++++++.++............-..+++.+...+. .++.+...+++++..+.
T Consensus       401 ~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         401 QLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            333333 3578899999999999999999999999875321100000000123455555554 46788889999999887


Q ss_pred             hhhh
Q 009622          442 KVGE  445 (530)
Q Consensus       442 ~~~~  445 (530)
                      ....
T Consensus       479 ~~~~  482 (876)
T d1qgra_         479 EAAY  482 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1.3e-06  Score=82.50  Aligned_cols=319  Identities=11%  Similarity=0.103  Sum_probs=198.6

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHhhhCCCchhhhh---HhhcC--ChHHHHHhhcCCCchhHHHHHHHHhhhhccCC
Q 009622          160 AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL---VLSQG--GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (530)
Q Consensus       160 ~i~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~---i~~~~--~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~  233 (530)
                      .+..++.+|.. ..+++.+..+..+..+..+.+.....   .....  .-.++..++ ...+.-....++..+..++...
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l-~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhc-cCchhHHHHHHHHHHHHHHhcc
Confidence            46677777765 66778888888888777665532121   11111  123444445 5566667777777777777654


Q ss_pred             CCCCh--hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH--HhCcHHHHHHhhCC-------------
Q 009622          234 PQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI--EAGVFPRLAEFLMH-------------  296 (530)
Q Consensus       234 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~-------------  296 (530)
                      .....  .........+..+....+.+...-++.++..+...+..+ ..+.  +...++.++.+|..             
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R-~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHH-HHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            22211  111222233444446677777777778888777665433 3332  22344555555432             


Q ss_pred             ----CCchhHHHHHHHHhHhhcCCchhhHHHhhc--CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCH----H-HHHH
Q 009622          297 ----PSPSVLIPALRTVGNIVTGDDMQTQCVIEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR----E-QIQA  365 (530)
Q Consensus       297 ----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~-~~~~  365 (530)
                          ....++..++.+++-++. ++.....+...  +.++.++.++.......+.+-++.++.|++....    . ....
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~  311 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL  311 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence                123578889999988886 55555555554  4588899998766578888999999999987321    1 2334


Q ss_pred             HHHhCcHHHHHHHHhcC---chhHHHHHHHHHHHhhc----CC-----------------CHHHH-HHHHHc--------
Q 009622          366 VIEANIIGPLVALLENA---EFDIKKEAAWAISNATS----GG-----------------THEQI-KFLVIQ--------  412 (530)
Q Consensus       366 l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~----~~-----------------~~~~~-~~l~~~--------  412 (530)
                      ++..++++. +..|...   |+++....- .|.....    .-                 +|-+. +.+...        
T Consensus       312 ~v~~~~l~~-l~~L~~r~~~Dedl~edl~-~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         312 LLLGNALPT-VQSLSERKYSDEELRQDIS-NLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHCHHHH-HHHHHSSCCSSHHHHHHHH-HHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHcchhHH-HHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            556666655 4555443   666554332 2221111    00                 11111 222222        


Q ss_pred             --CChHHHHhccC----------CCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCH
Q 009622          413 --GCIKPLCDLLV----------CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA  480 (530)
Q Consensus       413 --~~l~~L~~lL~----------~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  480 (530)
                        .++..|+++|+          +.|+.++..|+.=++.+++..+.           .+..++..|+-+.+.+|++|+|+
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~-----------gr~il~~lg~K~~vM~Lm~h~d~  458 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-----------SIDVLDKTGGKADIMELLNHSDS  458 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-----------HHHHHHHHSHHHHHHHHTSCSSH
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc-----------hhHHHHHcCcHHHHHHHhcCCCH
Confidence              23788888885          34778888999999999988775           37788999999999999999999


Q ss_pred             HHHHHHHHHHHHhC
Q 009622          481 EIYEKSVKLLETYW  494 (530)
Q Consensus       481 ~v~~~a~~il~~~~  494 (530)
                      +|+..|...++++.
T Consensus       459 ~Vr~eAL~avQklm  472 (477)
T d1ho8a_         459 RVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=2.4e-06  Score=80.66  Aligned_cols=303  Identities=15%  Similarity=0.123  Sum_probs=186.9

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009622           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (530)
Q Consensus        76 ~~l~~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~~~-~~g~v~~Lv~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (530)
                      +.+...+.+++.-....+...+..+++.. .......- .......+-.+...++ ...+.-|+.++..+.. .+..+..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHH
Confidence            44455566666667777777778777654 22222111 0112333333445555 7888889999999988 6888877


Q ss_pred             HHh--CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHhhhCCCchhhhhHhhc--CChHHHHHhhcCC
Q 009622          155 VID--HGAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQ  213 (530)
Q Consensus       155 ~~~--~g~i~~L~~lL~~-----------------~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~--~~i~~Ll~ll~~~  213 (530)
                      +..  ...++.|+..|..                 ....+...++.+++-++.+.. ....+...  +.++.++.++..+
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhh
Confidence            754  2345555555532                 134778899999999987554 44444443  3488888888788


Q ss_pred             CchhHHHHHHHHhhhhccCCCCCC------hhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccC----C---hHHH
Q 009622          214 PKLSMLRNATWTLSNFCRGKPQPP------FDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDG----T---NDKI  278 (530)
Q Consensus       214 ~~~~~~~~a~~~L~~L~~~~~~~~------~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~l~~l~~~----~---~~~~  278 (530)
                      ..+.+.+-++.++.|++.......      .....++++.+..+...  .|+++..+.- .|......    -   +...
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~-~L~~~L~~~~k~lTsfd~Y~  359 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDIS-NLKEILENEYQELTSFDEYV  359 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHH-HHHHHHHHHHHTCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhcCcHHHHH
Confidence            899999999999999997642221      12223445544444332  3777665532 22221110    0   0011


Q ss_pred             HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcC---------CCchhHHHHHH
Q 009622          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG---------NYKKSIKKEAC  349 (530)
Q Consensus       279 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---------~~~~~v~~~a~  349 (530)
                      . -+.+|       .|.. +|..+....|- -|.....+..      ..++..|+.+|.+         +.++.+..-||
T Consensus       360 ~-Ev~Sg-------~L~W-SP~H~se~FW~-EN~~kf~e~~------~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc  423 (477)
T d1ho8a_         360 A-ELDSK-------LLCW-SPPHVDNGFWS-DNIDEFKKDN------YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVAL  423 (477)
T ss_dssp             H-HHHHT-------CCCC-CGGGGCHHHHH-HHSGGGSSGG------GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred             H-HHhcC-------CCCC-CCCcCChhHHH-HHHHhhcccc------hHHHHHHHHHHhhcccccccccCCCcceeehhh
Confidence            1 11111       1211 22222222222 1222222222      2457788888852         22788889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009622          350 WTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  399 (530)
Q Consensus       350 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  399 (530)
                      .=++.++.+.|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus       424 ~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         424 NDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999888888888888999999999999999999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.39  E-value=4.4e-08  Score=75.49  Aligned_cols=109  Identities=19%  Similarity=0.221  Sum_probs=88.4

Q ss_pred             hCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHH
Q 009622          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIG  373 (530)
Q Consensus       294 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  373 (530)
                      |+++++.+|..|+++|+.+..            ..++.|+..|.++ ++.+|..|+++|+++..  +         +.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--h---------hhHH
Confidence            456778888888888876531            3467888999988 99999999999998743  2         2578


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHHH
Q 009622          374 PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE  438 (530)
Q Consensus       374 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l~  438 (530)
                      .|..++.++++.||..|+++|+.+..   +         +.++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---c---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999999999999998743   2         24677888999999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.30  E-value=1e-07  Score=73.41  Aligned_cols=108  Identities=21%  Similarity=0.195  Sum_probs=86.4

Q ss_pred             cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHH
Q 009622          253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (530)
Q Consensus       253 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L  332 (530)
                      .++++.|+..++++|+.+..            ..++.|+..|.++++.++..|+++|+++..           .+.++.|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L   58 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPL   58 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHH
Confidence            45567777777777766531            345778889999999999999999987653           2357889


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHH
Q 009622          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAIS  395 (530)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  395 (530)
                      ..+|.++ ++.||..|+++|+.+.  ++         +.++.|..+++++++.||..|+.+|.
T Consensus        59 ~~~l~d~-~~~VR~~a~~aL~~i~--~~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          59 IKLLEDD-SGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHC-CTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             Hhhhccc-hhHHHHHHHHHHHHhC--cc---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999988 9999999999999884  22         35788888999999999999998874

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.014  Score=51.20  Aligned_cols=202  Identities=13%  Similarity=0.090  Sum_probs=151.1

Q ss_pred             HHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchh----hHHHhh-cCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009622          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ----TQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVS  353 (530)
Q Consensus       279 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~----~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (530)
                      +.+...+++..|+..|..-+.+.+..+..+++++.......    .+++.. ..++..|+.-..   ++++--.+...|.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHH
Confidence            44666788999999999999999999999999998754322    234442 234444444443   4555555555566


Q ss_pred             HHhcCCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC---ChHHHHhccCCCChHHH
Q 009622          354 NITAGNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG---CIKPLCDLLVCPDPRIV  430 (530)
Q Consensus       354 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~l~~L~~lL~~~~~~v~  430 (530)
                      .++.+ ......++....+..+.+.++.++.++...|..++..+.... +.....++..+   ....+..+|.+++.-++
T Consensus       140 Ecik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         140 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            55554 567778888888999999999999999999999999988864 34444444433   46677889999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009622          431 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  493 (530)
Q Consensus       431 ~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~il~~~  493 (530)
                      ..++..|+.++-......        .....+.+..-+..+..|..+++..|+-.|..+..-|
T Consensus       218 RqSlKLLgelLldr~N~~--------vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvF  272 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFT--------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF  272 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHH--------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHH--------HHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhh
Confidence            999999999997655432        2356677777888999999999999999998888744

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0092  Score=52.32  Aligned_cols=201  Identities=16%  Similarity=0.156  Sum_probs=142.9

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhh----hhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhh
Q 009622          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (530)
Q Consensus       154 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~----~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L  229 (530)
                      .+...+.+..|+..|..-+.+.+..+..+++++.......+    +.+...  ...+..++....++++.-.+-..|...
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            34455778889999988889999999999999987654443    223321  233333333334566666666666666


Q ss_pred             ccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCCchhHHHHH
Q 009622          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPAL  306 (530)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~~~~~a~  306 (530)
                      ++.............+-.+.+.+..++=++..+|..++..+..........++..   .++.....+|.+++.-++..++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            6654433444445556667777888888999999999988876666555555544   3567778899999999999999


Q ss_pred             HHHhHhhcCCchh---hHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009622          307 RTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (530)
Q Consensus       307 ~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (530)
                      ..||.+.......   ...+-+..-+..++.+|++. +..++-+|..+.--+.+
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhc
Confidence            9999998533322   22333456789999999998 99999999998888777

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.029  Score=58.93  Aligned_cols=298  Identities=11%  Similarity=0.087  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh----C--CCCHHHHHHHHHHHHhhhCCCchhhhhHhh----cCC
Q 009622          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL----Y--SPSDDVREQAVWALGNIAGDSPRCRDLVLS----QGG  202 (530)
Q Consensus       133 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL----~--~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~----~~~  202 (530)
                      .+..|..++..++....+.....+    .+.+...+    .  +.++..++.++.+++.++............    ...
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~  452 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIF----LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV  452 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred             HHHHHHHHHHHHHHhccccchHHH----HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhH
Confidence            456666677777764433322221    22222222    2  256778899998888886432211110000    011


Q ss_pred             hHHH----HHhhc--CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 009622          203 LVPL----LAQLN--GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (530)
Q Consensus       203 i~~L----l~ll~--~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~~  276 (530)
                      .+.+    ...+.  ......++..++|+++.++....   ......+++.++.+|.+++..++..|++++..++.....
T Consensus       453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~  529 (959)
T d1wa5c_         453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES  529 (959)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcc
Confidence            1112    22221  33456788899999999887532   334577899999999999999999999999988753211


Q ss_pred             -----------HHHHHHHhCcHHHHHHhhCCCCch-----hHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHH----hh
Q 009622          277 -----------KIQAVIEAGVFPRLAEFLMHPSPS-----VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN----LL  336 (530)
Q Consensus       277 -----------~~~~~~~~~~i~~L~~lL~~~~~~-----~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~----lL  336 (530)
                                 .....+. .++..++..+......     ....++.+++.++....+...... ..+++.|..    ..
T Consensus       530 ~~~~~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~  607 (959)
T d1wa5c_         530 NTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMA  607 (959)
T ss_dssp             SSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHT
T ss_pred             cccchhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence                       0111111 2344455555433221     123355566555432221111111 122333333    33


Q ss_pred             cCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---CHHHHHHHHHc
Q 009622          337 SGNYKKSIKKEACWTVSNITA-GNREQIQAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG---THEQIKFLVIQ  412 (530)
Q Consensus       337 ~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~  412 (530)
                      .++.++.....+..+++.+.. .+++.... +...++|.+...+..........+...+..+....   .+..      .
T Consensus       608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~  680 (959)
T d1wa5c_         608 KNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESI------K  680 (959)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTT------G
T ss_pred             cCccchHHHHHHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHH------H
Confidence            444356677777777887765 23333333 33457788888887776666667776666655432   1111      0


Q ss_pred             CChHHHHhccCCCChHHHHHHHHHHHHHHhhhhh
Q 009622          413 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  446 (530)
Q Consensus       413 ~~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~  446 (530)
                      ..++.+..............+...+..++..++.
T Consensus       681 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~  714 (959)
T d1wa5c_         681 PLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSS  714 (959)
T ss_dssp             GGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHH
Confidence            1233443323223333455566677777666544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.74  E-value=0.19  Score=45.25  Aligned_cols=174  Identities=14%  Similarity=0.146  Sum_probs=109.7

Q ss_pred             hHHHHHhhcC---CCchhHHHHHHHHhhhhc----cCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 009622          203 LVPLLAQLNG---QPKLSMLRNATWTLSNFC----RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (530)
Q Consensus       203 i~~Ll~ll~~---~~~~~~~~~a~~~L~~L~----~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~l~~l~~~~~  275 (530)
                      +..+..++..   ..++.+...+..+++++.    ...+.........+...+.......+.+-..-++.+|+|+..  +
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p  202 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P  202 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H
Confidence            4455566521   135666666666666554    343333344444555555566667777777778999999852  2


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCC-------CchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCC-CchhHHHH
Q 009622          276 DKIQAVIEAGVFPRLAEFLMHP-------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKE  347 (530)
Q Consensus       276 ~~~~~~~~~~~i~~L~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~  347 (530)
                               +.++.|..++...       ...++..|++++.+++...+...        .+.+..++.+. .++++|..
T Consensus       203 ---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRia  265 (336)
T d1lsha1         203 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR  265 (336)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHH
Confidence                     3456777777532       45689999999999987655332        34455555443 27889998


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCcHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHH
Q 009622          348 ACWTVSNITAGNREQIQAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQ  405 (530)
Q Consensus       348 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~  405 (530)
                      |+.+|... .-+..         .+..+...+.. ++..|...+...|.+++....|..
T Consensus       266 A~~~lm~t-~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         266 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHhc-CCCHH---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcch
Confidence            88887653 11222         34555665644 478899888889999888665543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.046  Score=57.28  Aligned_cols=182  Identities=9%  Similarity=0.065  Sum_probs=104.4

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchh--------hhhHhh--
Q 009622          130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--------RDLVLS--  199 (530)
Q Consensus       130 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~--------~~~i~~--  199 (530)
                      .+.++..++|+++..+......  .+  ..+++.++..|.+++..++..|++++..++......        .+.+..  
T Consensus       471 ~~~lr~~~~~~i~~~~~~~~~~--~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l  546 (959)
T d1wa5c_         471 HIILRVDAIKYIYTFRNQLTKA--QL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST  546 (959)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCHH--HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred             hHHHHHHHHHHHHHHHhhccHH--HH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH
Confidence            3789999999999988743211  11  245789999999999999999999999998533211        000000  


Q ss_pred             cCChHHHHHhhcCCCc----hhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhc----C-CChhHHHHHHHHHHHh
Q 009622          200 QGGLVPLLAQLNGQPK----LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----S-NDDEVLTDACWALSYL  270 (530)
Q Consensus       200 ~~~i~~Ll~ll~~~~~----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~----~-~d~~v~~~a~~~l~~l  270 (530)
                      ...+..++..+.....    ......++.++..+..............+++.+...+.    + .++.....+..+++.+
T Consensus       547 ~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l  626 (959)
T d1wa5c_         547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI  626 (959)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            0123344444422221    11123355555555443333333334455555555442    2 2456666677777776


Q ss_pred             ccCC-hHHHHHHHHhCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCC
Q 009622          271 SDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (530)
Q Consensus       271 ~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~  316 (530)
                      .... ++... .....+++.+...+..........++..+..+....
T Consensus       627 ~~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         627 LNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            5432 22223 233466788888887777677777777777666443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.62  E-value=0.0011  Score=56.93  Aligned_cols=69  Identities=17%  Similarity=0.109  Sum_probs=40.7

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHHHHHhhcCCCchhHHHHHHHHhhhhccCCCCCChhh
Q 009622          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (530)
Q Consensus       161 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  240 (530)
                      +..|..+++++++.|+..+++.|+                  ...+..++ .+++..++..+...+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~-~D~d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALM-FDEDREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTT-TCSCHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHh-cCCChhHHHHHHhccC-------------
Confidence            566778888888999988875432                  12233444 5666777666655431             


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHH
Q 009622          241 VSPALPALAHLIHSNDDEVLTDACW  265 (530)
Q Consensus       241 ~~~~l~~L~~ll~~~d~~v~~~a~~  265 (530)
                          .+.|..++.+++..|+..+..
T Consensus       116 ----~~~L~~Ll~D~d~~VR~~aa~  136 (233)
T d1lrva_         116 ----LEQLEQMAADRDYLVRAYVVQ  136 (233)
T ss_dssp             ----TGGGGGGTTCSSHHHHHHHHH
T ss_pred             ----HHHHHHHhcCCCHHHHHHHHh
Confidence                123444555566666655543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.74  E-value=0.0094  Score=50.85  Aligned_cols=114  Identities=9%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009622          287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQAV  366 (530)
Q Consensus       287 i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  366 (530)
                      +..|..+++++++.|+..+...|+                  .+.|..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456777888888888888865432                  12344555555 6677766554321             


Q ss_pred             HHhCcHHHHHHHHhcCchhHHHHHHHH-----HHHhhcCCCHHHHHHHHHcCChHHHHhccCCCChHHHHHHHHHH
Q 009622          367 IEANIIGPLVALLENAEFDIKKEAAWA-----ISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGL  437 (530)
Q Consensus       367 ~~~~~i~~L~~ll~~~~~~v~~~a~~a-----L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~al~~l  437 (530)
                           .+.|..++.++++.||..++..     |..++...+++....+...-..+.|..+++++++.|+..+...+
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                 1233344445555555555432     22222223333334433333456677777888888877766543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.50  E-value=0.81  Score=40.96  Aligned_cols=140  Identities=13%  Similarity=0.062  Sum_probs=99.6

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHH-HhCcHHHHHHHHhcCchhHHHHHHHHHHHhhcCC-----CHH------HHHH
Q 009622          341 KKSIKKEACWTVSNITAGNREQIQAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGG-----THE------QIKF  408 (530)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~-----~~~------~~~~  408 (530)
                      +.....++..||..+... ......++ ...++..+...+.++.+.++..|...|..++...     ...      ....
T Consensus        69 d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~  147 (343)
T d2bnxa1          69 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  147 (343)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            355777888888888764 44455555 4678899999999999999999999998887532     111      1122


Q ss_pred             HHHcCChHHHHhccCCC-ChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhcCCCHHHHHHH
Q 009622          409 LVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS  486 (530)
Q Consensus       409 l~~~~~l~~L~~lL~~~-~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a  486 (530)
                      .-+.+-..++++.++.. +.+....++..+..++...+....     -...+..|..+|..+.|..+....++++....
T Consensus       148 ~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~-----R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         148 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQL  221 (343)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             hcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH-----HHHHHHHHHHCChHHHHHHHHccCChHHHHHH
Confidence            23446678888888754 567888888888888766554332     23367789999999999999998898876544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.92  Score=40.57  Aligned_cols=157  Identities=11%  Similarity=0.105  Sum_probs=100.5

Q ss_pred             HHHHhhcCCCh-HHHHHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 009622           77 VMVAGVWSNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA  145 (530)
Q Consensus        77 ~l~~~l~s~~~-~~~~~a~~~l~~l~s~~~~~~~~~~~~~g~v~~Lv~ll~~----~------~~~~i~~~a~~~L~~l~  145 (530)
                      .++..|++.-. +.....+..|+--+...+...++.+ ..+++..|+.+|..    .      .+...+.+++.||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            45555655332 3334456666555555322234444 34446667666531    1      12568899999999999


Q ss_pred             cCChhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCc--hhhhh----------HhhcCChHHHHHhhcC
Q 009622          146 SGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP--RCRDL----------VLSQGGLVPLLAQLNG  212 (530)
Q Consensus       146 ~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~--~~~~~----------i~~~~~i~~Ll~ll~~  212 (530)
                      . +......++ ..+++..+...|.++...++..|+.+|..+|....  .....          .-+.+-..++++.+..
T Consensus        85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            8 455555554 56889999999999999999999999999985431  11122          1234556777877755


Q ss_pred             CCchhHHHHHHHHhhhhccCCCC
Q 009622          213 QPKLSMLRNATWTLSNFCRGKPQ  235 (530)
Q Consensus       213 ~~~~~~~~~a~~~L~~L~~~~~~  235 (530)
                      ..+.+....++..+..+....+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             cccHHHHHHHHHHHHHHHcCccc
Confidence            66777777777777777766443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=94.27  E-value=1.7  Score=38.62  Aligned_cols=200  Identities=15%  Similarity=0.130  Sum_probs=121.3

Q ss_pred             CHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHhhhC---
Q 009622          117 VVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG---  188 (530)
Q Consensus       117 ~v~~Lv~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~nl~~---  188 (530)
                      .+..+.+++.+.. ...   +|...|..+........      ..+..+..++.+    .++.++..+..++++++.   
T Consensus        89 a~~~i~~~I~~~~ls~~---ea~~~l~~l~~~~~Pt~------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSA---EATQIVASTLSNQQATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHH---HHHHHHHHHHHTCCCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHH---HHHHHHHHHhccCCCCH------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            3455677776655 222   23333333433211111      124556667765    467888899988888762   


Q ss_pred             -CCchhhhhHhhcCChHHHHHhhc---CCCchhHHHHHHHHhhhhccCCCCCChhhhhchHHHHHHhhcCC-------Ch
Q 009622          189 -DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-------DD  257 (530)
Q Consensus       189 -~~~~~~~~i~~~~~i~~Ll~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~ll~~~-------d~  257 (530)
                       ..+.+...     .++.+...+.   ...+.+-...++.+|+|+-.          ...++.+.+++...       ..
T Consensus       160 ~~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~  224 (336)
T d1lsha1         160 ANTVSCPDE-----LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYST  224 (336)
T ss_dssp             TTCSSCCGG-----GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCH
T ss_pred             cCCCCCcHH-----HHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccH
Confidence             33323222     3444444442   34556666778889999863          34677788777532       46


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHh
Q 009622          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (530)
Q Consensus       258 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  335 (530)
                      .++..|++++..+....+...+        +.+.+++.+  .+.++|..|+..+-..   .|..       ..+..+...
T Consensus       225 ~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~i~~~  286 (336)
T d1lsha1         225 RVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMVAVR  286 (336)
T ss_dssp             HHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence            7999999999999877654333        334455444  4577888888777442   2221       235667777


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcC
Q 009622          336 LSGNYKKSIKKEACWTVSNITAG  358 (530)
Q Consensus       336 L~~~~~~~v~~~a~~~L~nl~~~  358 (530)
                      +..+.+..|+....-.|.+++..
T Consensus       287 l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         287 LRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCcHHHHHHHHHHHHHHHHhC
Confidence            77665788888888888888773

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=1.5  Score=33.45  Aligned_cols=74  Identities=8%  Similarity=-0.107  Sum_probs=60.4

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHhhh
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKVG  444 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll~~~  444 (530)
                      .+..|..-+.++++.++..|+..|-.++.++.+.+...+.+.+++..|..++..      .+..|...++..+.......
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            455677778889999999999999999999888888888888999999998863      45678888888777765443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=1.6  Score=33.25  Aligned_cols=73  Identities=8%  Similarity=-0.114  Sum_probs=59.6

Q ss_pred             cHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhccCC------CChHHHHHHHHHHHHHHhh
Q 009622          371 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILKV  443 (530)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~al~~l~~ll~~  443 (530)
                      .+..|..-+.++++.++..|+..|-.++.++.+.+...+.+..++..|..++..      .++.|...++..+......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            445667778889999999999999999998888888888888899999998863      4677888888877766543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.89  E-value=6.4  Score=29.69  Aligned_cols=72  Identities=19%  Similarity=0.244  Sum_probs=55.9

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLET  492 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~il~~  492 (530)
                      ++..|..-+.++++.++..++..|..+++.+..          .|...+...+.++.|..+. ...+..|++++..+++.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~----------~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~  112 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA----------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQT  112 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH----------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccch----------HHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            466677777889999999999999999887533          1566666667777777765 44688899999999999


Q ss_pred             hCC
Q 009622          493 YWL  495 (530)
Q Consensus       493 ~~~  495 (530)
                      |-.
T Consensus       113 W~~  115 (145)
T d1dvpa1         113 WAY  115 (145)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.03  E-value=3.2  Score=36.57  Aligned_cols=216  Identities=13%  Similarity=0.035  Sum_probs=107.7

Q ss_pred             CCHHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHhhhCCCchhhhhHhhcCChHH
Q 009622          129 DYPQLQFEAAWALTNIASG---TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP  205 (530)
Q Consensus       129 ~~~~i~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~i~~  205 (530)
                      .+|.++. +...|..+...   ++......++...+..|+.++.++++.-|+....+|.++-+.....|..+.. .+...
T Consensus       101 sWpHL~l-VY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~i  178 (343)
T d2jaka1         101 AWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNI  178 (343)
T ss_dssp             THHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHH
T ss_pred             CCchHHH-HHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHH
Confidence            3455543 33344444431   1222333334456788999999999999999999999987766666665443 34556


Q ss_pred             HHHhhcCCCchhHHHHHHHHhhhhccCCCC-CChhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHH
Q 009622          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIE  283 (530)
Q Consensus       206 Ll~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~  283 (530)
                      +.+.+.......-...+++.++.+..+-.. .......-....++.+.+...- ..-.....++......++.....+  
T Consensus       179 f~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~--  256 (343)
T d2jaka1         179 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV--  256 (343)
T ss_dssp             HHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             HHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH--
Confidence            666664445555666777777777776532 2333333334445555543321 112222223333333333222211  


Q ss_pred             hCcHHHHHHhhCCCCchhHHHHHHHHhHhhcCCchhhHHHhhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009622          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (530)
Q Consensus       284 ~~~i~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (530)
                         +..+++.=-..+..-...-+.-+..+....+...-.-+...+...+..++.++ +..|-+.|+...
T Consensus       257 ---i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         257 ---VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             ---HHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             ---HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence               11222221112222233333444444433222111111224566666777777 777766665443

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.90  E-value=5  Score=30.31  Aligned_cols=72  Identities=15%  Similarity=0.199  Sum_probs=57.6

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..=|.+.++.++..++..|..+++.+..          .|...+...++++.|..+..      ..+..|++++.
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~----------~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil  115 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK----------RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKIL  115 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCH----------HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhH----------HHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHH
Confidence            456666667889999999999999999877522          26777888888888888763      47889999999


Q ss_pred             HHHHHhCC
Q 009622          488 KLLETYWL  495 (530)
Q Consensus       488 ~il~~~~~  495 (530)
                      .+++.|..
T Consensus       116 ~li~~W~~  123 (145)
T d1ujka_         116 ELLYSWTV  123 (145)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999854

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.04  E-value=9.3  Score=28.63  Aligned_cols=72  Identities=11%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             ChHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhcCCCCchhhHHHhhhhccHHHHHHHhc------CCCHHHHHHHH
Q 009622          414 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT------HDNAEIYEKSV  487 (530)
Q Consensus       414 ~l~~L~~lL~~~~~~v~~~al~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~a~  487 (530)
                      ++..|..-+.++++.++..++..|..+++.+..          .|...+....+++.+..+..      ..++.|+.++.
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~----------~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil  108 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE----------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVI  108 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH----------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHH
Confidence            455566667888999999999999999876532          26677777788888888864      46889999999


Q ss_pred             HHHHHhCC
Q 009622          488 KLLETYWL  495 (530)
Q Consensus       488 ~il~~~~~  495 (530)
                      .+++.|-.
T Consensus       109 ~li~~Wa~  116 (143)
T d1mhqa_         109 EILFSWTV  116 (143)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998744