Citrus Sinensis ID: 009661

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
MRFAIFSTHQSSVPAPQTDFMDIDDPIESVPREPPLSFLSGSRTLNPFSLLDPSSRRRFFDGASDFMSREPHVTHPREVREIPIEVRDGGDPSGHAPTIEDVTESANTHGPDNRGTAIIDEVDEDIPAPPAAQSTLRNDGRSSPTAPAFDNLADYSNDIEEEMIRAAIEASKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLRTAEQEKAQRELGGDVGASVAGASKPSEMELGKVATSNGRLEGGSLSIQEETEDVEEQPLVRHRSIHTSSGSGESDKEVGVTEVSSPPSPGQPDVSNQPQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYRFPYAPHQYMQPEGSYPRRVPRPPSPSLEAQRLIREQQDDEYLASLQADREKAEARRLMEEEARNAALAEERRKEEETRRKMEEQQEYERQLAAKEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHccccccccEEEEccccccccccccccccHHHccccccccEEEEEEc
cEEEEEEcccccccccccccccccccccccccccccccccHHccccccccccccHHHHHccccccccccccccccccccEEccEEEEccccccccccEEEEcccccccccccccEEEEEEcccccccccccHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHcccHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccEEEEEcccccHHHHHHHHHHccccccccEEEEccccccccccccccccHHHcccccHHEEEEEEcc
mrfaifsthqssvpapqtdfmdiddpiesvprepplsflsgsrtlnpfslldpssrrrffdgasdfmsrephvthprevreipievrdggdpsghaptiedvtesanthgpdnrgtaiidevdedipappaaqstlrndgrssptapafdnladysNDIEEEMIRAAIEASKQEAenvsgagtehrqphledvdLAHAVSLSLRTAEQEKAQRElggdvgasvagaskpsemelgkvatsngrleggslsiqeetedveeqplvrhrsihtssgsgesdkevgvtevssppspgqpdvsnqpqhngnafpsdewggisseeHDEAVMLEAAmfggipesgyrfpyaphqymqpegsyprrvprppspsleAQRLIREQQDDEYLASLQADREKAEARRLMEEEARNAALAEERRKEEETRRKMEEQQEYERQLAAKEaslpqepapddenAVTLLVrmpdgsrrgrrflksnklqslfdyidvgrgikagtyrlvrpyprrafsdgesaLTLNELGLTSKQEALFLELV
mrfaifsthqssvpapqtdFMDIDDPIESVPREPPLsflsgsrtlnpfslldpssrRRFFDGASdfmsrephvthprevreipievrdggdpsgHAPTIEDvtesanthgpdNRGTAIIDEVDEDIPAPPAaqstlrndgrssptapafdnLADYSNDIEEEMIRAAIEASKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLRTAEQEKaqrelggdvgasvagaskpsemelgKVATSNGRLEGGSLSIQeetedveeqplvrhrsihtssgsgesdkeVGVTEVSSPPSPGQPDVSNQPQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYRFPYAPHQYMQPEGSYPRRVPRPPSPSLEAQRLIREQQDDEYLASLQADREKAEARRLMEEEArnaalaeerrkeeetrRKMEEQQEYERQLAAkeaslpqepapddenaVTLLVrmpdgsrrgrrflksnklqslfdyidvgrgikagtyrlvrpyprrafsdgesaltlnelgltskqealflelv
MRFAIFSTHQSSVPAPQTDFMDIDDPIESVPREPPLSFLSGSRTLNPFSLLDPSSRRRFFDGASDFMSREPHVTHPREVREIPIEVRDGGDPSGHAPTIEDVTESANTHGPDNRGTAIIDEVDEDIPAPPAAQSTLRNDGRSSPTAPAFDNLADYSNDieeemiraaieaSKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLRTAEQEKAQRELggdvgasvagasKPSEMELGKVATSNGRLEGGSLSIQEETEDVEEQPLVRHRSIHTSSGSGESDKEVGVTEVSSPPSPGQPDVSNQPQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYRFPYAPHQYMQPEGsyprrvprppspsLEAQRLIREQQDDEYLASLQADrekaearrlmeeearnaalaeerrkeeetrrkmeeqqeYERQLAAKEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV
*************************************************************************************************************************************************************************************************************************************************************************************************************************************VMLEAAMFGGIPESGYRFPYA*************************************************************************************************************************FLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSD***ALTLNEL**************
**********SSVPAPQTDFMD*******************SRTLNPFSLLDPSSRRRFFD*****************VRE**********************ESANTHGPDNRGTAIIDEVDEDI*************************************************************************************************************************************************************************************************************************************************************************************************************************************VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV
************VPAPQTDFMDIDDPIESVPREPPLSFLSGSRTLNPFSLLDPSSRRRFFDGASDFMSREPHVTHPREVREIPIEVRDGGDPSGHAPTIEDVTESANTHGPDNRGTAIIDEVDEDIPAPPA************PTAPAFDNLADYSNDIEEEMIRAAIEAS***************QPHLEDVDLAHAVSLSLRTAEQEKAQRELGGDVGASVAGASKPSEMELGKVATSNGRLEGGSLSIQ***********VRHRSI********************************PQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYRFPYAPHQYMQPEGSYPRRVPRPPSPSLEAQRLIREQQDDEYLASLQADREKAEARRLME********************************************PDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV
MRFAIFSTHQSSVPAPQTDFMDIDDPIESVPREPPLSFLSGSRTLNPFSLLDPSSRRRFFDGASDFMSREPHVTHPREVREIPIEVRDGGDPSGHAPTIEDVTESANTHGPDNRGTAIIDEVDEDIPA********************FDNLADYSNDIEEEMIRAAIEASKQE*******************DLAHAVSLSLRTAEQEK*****************************************************************************************************DEWGGISSEEHDEAVMLEAAMFGGIPESGYRFPYAPHQ*****GSYPRRVPRPPSPSLEAQRLIREQQDDEYLASLQADREKAEARR**********************************L**KEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRFAIFSTHQSSVPAPQTDFMDIDDPIESVPREPPLSFLSGSRTLNPFSLLDPSSRRRFFDGASDFMSREPHVTHPREVREIPIEVRDGGDPSGHAPTIEDVTESANTHGPDNRGTAIIDEVDEDIPAPPAAQSTLRNDGRSSPTAPAFDNLADYSNDIEEEMIRAAIEASKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLRTAEQEKAQRELGGDVGASVAGASKPSEMELGKVATSNGRLEGGSLSIQEETEDVEEQPLVRHRSIHTSSGSGESDKEVGVTEVSSPPSPGQPDVSNQPQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYRFPYAPHQYMQPEGSYPRRVPRPPSPSLEAQRLIREQQDDEYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query529 2.2.26 [Sep-21-2011]
Q9UNN5650 FAS-associated factor 1 O yes no 0.268 0.218 0.376 3e-12
P54731649 FAS-associated factor 1 O yes no 0.268 0.218 0.364 7e-12
Q6GQ69445 FAS-associated factor 2-B N/A no 0.268 0.319 0.329 7e-11
Q6AZH6445 FAS-associated factor 2-A N/A no 0.281 0.334 0.325 7e-10
Q924K2649 FAS-associated factor 1 O yes no 0.272 0.221 0.348 1e-09
Q28BP9445 FAS-associated factor 2 O yes no 0.281 0.334 0.325 3e-09
O74498427 UBX domain-containing pro yes no 0.175 0.217 0.4 2e-08
Q9QZ49277 UBX domain-containing pro no no 0.162 0.310 0.382 5e-06
O00124270 UBX domain-containing pro no no 0.145 0.285 0.379 3e-05
Q96CS3445 FAS-associated factor 2 O no no 0.277 0.330 0.339 0.0003
>sp|Q9UNN5|FAF1_HUMAN FAS-associated factor 1 OS=Homo sapiens GN=FAF1 PE=1 SV=2 Back     alignment and function desciption
 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 20/162 (12%)

Query: 370 EAQRLIREQQDDEYLASLQADREKAEAR-RLMEEEARNAALAEERRKEEETRRKMEEQQE 428
           EA+  ++ +QD+ Y  SL+ADR K EA  R M E+ R           E+ R++ EE++E
Sbjct: 502 EARENVKREQDEAYRLSLEADRAKREAHEREMAEQFR----------LEQIRKEQEEERE 551

Query: 429 YERQLAAKEASLPQEPAPDDENA---VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGR 485
             R   + E +LP  P P +ENA     L +R P G    RRFL SNKLQ +FD++   +
Sbjct: 552 AIR--LSLEQALP--PEPKEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFV-ASK 606

Query: 486 GIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527
           G     Y+L+  +PRR  +  +   +L E+ L   QE LFLE
Sbjct: 607 GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP-QETLFLE 647
Potentiates but cannot initiate FAS-induced apoptosis.
Homo sapiens (taxid: 9606)
>sp|P54731|FAF1_MOUSE FAS-associated factor 1 OS=Mus musculus GN=Faf1 PE=1 SV=2 Back     alignment and function description
>sp|Q6GQ69|FAF2B_XENLA FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1 Back     alignment and function description
>sp|Q6AZH6|FAF2A_XENLA FAS-associated factor 2-A OS=Xenopus laevis GN=faf2-a PE=2 SV=1 Back     alignment and function description
>sp|Q924K2|FAF1_RAT FAS-associated factor 1 OS=Rattus norvegicus GN=Faf1 PE=2 SV=1 Back     alignment and function description
>sp|Q28BP9|FAF2_XENTR FAS-associated factor 2 OS=Xenopus tropicalis GN=faf2 PE=2 SV=1 Back     alignment and function description
>sp|O74498|UCP10_SCHPO UBX domain-containing protein 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ucp10 PE=3 SV=1 Back     alignment and function description
>sp|Q9QZ49|UBXN8_MOUSE UBX domain-containing protein 8 OS=Mus musculus GN=Ubxn8 PE=1 SV=1 Back     alignment and function description
>sp|O00124|UBXN8_HUMAN UBX domain-containing protein 8 OS=Homo sapiens GN=UBXN8 PE=1 SV=2 Back     alignment and function description
>sp|Q96CS3|FAF2_HUMAN FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
255537297564 ara4-interacting protein, putative [Rici 0.931 0.874 0.637 1e-173
356514058598 PREDICTED: uncharacterized protein LOC10 0.965 0.854 0.610 1e-161
224071726589 predicted protein [Populus trichocarpa] 0.948 0.852 0.657 1e-158
225426846624 PREDICTED: uncharacterized protein LOC10 0.975 0.826 0.603 1e-158
297742567 738 unnamed protein product [Vitis vinifera] 0.975 0.699 0.603 1e-158
356563214597 PREDICTED: uncharacterized protein LOC10 0.962 0.852 0.591 1e-157
224058601586 predicted protein [Populus trichocarpa] 0.967 0.873 0.632 1e-155
147818808588 hypothetical protein VITISV_004395 [Viti 0.913 0.821 0.567 1e-139
356563216557 PREDICTED: uncharacterized protein LOC10 0.909 0.863 0.573 1e-138
449461096590 PREDICTED: uncharacterized protein LOC10 0.964 0.864 0.545 1e-138
>gi|255537297|ref|XP_002509715.1| ara4-interacting protein, putative [Ricinus communis] gi|223549614|gb|EEF51102.1| ara4-interacting protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 348/546 (63%), Positives = 395/546 (72%), Gaps = 53/546 (9%)

Query: 7   STHQSSVPAPQTDFMDIDDPIESVPREPPLSFLSGSRTLNPFSLLDPSSRRRFFDGASDF 66
           +   +SV AP+ D MDIDDP+E  PR  P+S L+ + T+NPFSLLDP      F+G SDF
Sbjct: 49  TVRDTSVIAPEDDLMDIDDPVEVAPRRNPMSLLTEASTMNPFSLLDPQFHSSLFNGGSDF 108

Query: 67  MSREPHVTHPREVREIPIEVRDGGDPS---GHAPTIEDVTESANTHGPDNRGTAIIDEVD 123
            +R P V+ PRE REIPIEV+DG D S   GHAP IEDVT + +TH PD  GT I+D+ D
Sbjct: 109 TNRAPFVSQPRERREIPIEVKDGSDASSRSGHAPIIEDVTGTVHTHEPDIHGTVIVDDED 168

Query: 124 EDIPA--PPAAQSTLRNDGRSS----------PTAPAFDNLADYSNDIEEEMIRAAIEAS 171
            DIPA  P  A       G +S          P+ P F+NL DYSNDIEEEMIRAAIEAS
Sbjct: 169 -DIPANQPGRAAPWTEQRGDASGDGALERHAIPSVPEFNNLPDYSNDIEEEMIRAAIEAS 227

Query: 172 KQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLRTAEQEKAQRELGGDVGASVAGASKPSE 231
           K+EAE                             AEQEKA REL G VGAS  GASKP +
Sbjct: 228 KREAE----------------------------EAEQEKALRELRGKVGASEMGASKPDK 259

Query: 232 MELGKVATSNGRLEGGSLSIQEETEDVEEQPLVRHRSIHTSSGSGESDKEVGVTEVSSPP 291
           MELG V  SNGR   GSLSIQEE EDVEEQPLVRHR+  TSSGS  S +EVGV E S P 
Sbjct: 260 MELGTVVASNGRERTGSLSIQEEAEDVEEQPLVRHRARRTSSGSVVSAREVGVIEASPPT 319

Query: 292 SPGQPDVSNQPQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPE-SGYRFPYAPHQY 350
           SPGQ ++S+ PQ NG++F SDEWGGISSEEHDEAVMLEAAMFGGIPE +GYRFPYAPHQ+
Sbjct: 320 SPGQNNLSSHPQRNGDSF-SDEWGGISSEEHDEAVMLEAAMFGGIPEGTGYRFPYAPHQF 378

Query: 351 MQPEGSYPRRVPRPPSPSLEAQRLIREQQDDEYLASLQADREK-------AEARRLMEEE 403
           MQ EGSY R +PRPPSPSL+AQRLIREQQDDEYLASL ADREK       AEARRL EE 
Sbjct: 379 MQAEGSYSRGIPRPPSPSLQAQRLIREQQDDEYLASLAADREKEMKAMEEAEARRLQEEA 438

Query: 404 ARNAALAEERRKEEETRRKMEEQQEYERQLAAKEASLPQEPAPDDENAVTLLVRMPDGSR 463
           AR AAL E+R KEEE+RRK+EE+    RQLAAKEASLPQEP  DDENA+TLLVRMP+G+R
Sbjct: 439 ARKAALEEDRLKEEESRRKLEEEXXESRQLAAKEASLPQEPPSDDENAITLLVRMPNGTR 498

Query: 464 RGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEA 523
            GRRFLK++ L+SLFD+ID+ R    G+YRLVRPYPRRAFSDGES LTL ELGLT+KQEA
Sbjct: 499 CGRRFLKTDNLRSLFDFIDIARVANPGSYRLVRPYPRRAFSDGESELTLRELGLTTKQEA 558

Query: 524 LFLELV 529
           LFLEL+
Sbjct: 559 LFLELI 564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356514058|ref|XP_003525724.1| PREDICTED: uncharacterized protein LOC100784059 [Glycine max] Back     alignment and taxonomy information
>gi|224071726|ref|XP_002303564.1| predicted protein [Populus trichocarpa] gi|222840996|gb|EEE78543.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426846|ref|XP_002276758.1| PREDICTED: uncharacterized protein LOC100251323 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742567|emb|CBI34716.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563214|ref|XP_003549859.1| PREDICTED: uncharacterized protein LOC100777000 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224058601|ref|XP_002299560.1| predicted protein [Populus trichocarpa] gi|222846818|gb|EEE84365.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147818808|emb|CAN71799.1| hypothetical protein VITISV_004395 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563216|ref|XP_003549860.1| PREDICTED: uncharacterized protein LOC100777000 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449461096|ref|XP_004148279.1| PREDICTED: uncharacterized protein LOC101208817 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
TAIR|locus:2139787564 SAY1 [Arabidopsis thaliana (ta 0.933 0.875 0.470 8.8e-102
TAIR|locus:2127198525 AT4G23040 "AT4G23040" [Arabido 0.587 0.592 0.467 1.4e-62
TAIR|locus:504955540469 AT4G00752 "AT4G00752" [Arabido 0.187 0.211 0.636 4.8e-44
DICTYBASE|DDB_G0269774264 DDB_G0269774 "UBX domain-conta 0.168 0.337 0.322 3.2e-08
TAIR|locus:2132751480 AT4G10790 [Arabidopsis thalian 0.289 0.318 0.268 1.9e-07
UNIPROTKB|Q9UNN5650 FAF1 "FAS-associated factor 1" 0.168 0.136 0.391 1.1e-06
DICTYBASE|DDB_G0291259543 DDB_G0291259 "UBX domain-conta 0.164 0.160 0.355 2.2e-06
MGI|MGI:109419649 Faf1 "Fas-associated factor 1" 0.168 0.137 0.369 3.9e-06
UNIPROTKB|F1NLG0650 FAF1 "Uncharacterized protein" 0.168 0.136 0.391 3.9e-06
ZFIN|ZDB-GENE-040426-2863683 faf1 "Fas associated factor 1" 0.168 0.130 0.369 4.8e-06
TAIR|locus:2139787 SAY1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 251/533 (47%), Positives = 303/533 (56%)

Query:    14 PAPQTDFMDIDDPIESVPREPPLSFLSGSRTLN--PFSLLDPSSRRRFFDGASDFMSREP 71
             P    D MDIDD I + P+ P LS  + +RT+   PFSLLD    RR FD +   M R P
Sbjct:    54 PVNDDDEMDIDDVIPA-PQSP-LSMFNAARTIGRPPFSLLDSDFARRVFD-SDPLMPRPP 110

Query:    72 HVTHPREVREIPIEVRDGGDPSGH---APTIEDVTESANTHGP-DNRGTAIIDEV-DEDI 126
              V+HPREVR+IPIEV+D   PSG    APTIEDVTE+A+  GP   +GT IIDE  D+DI
Sbjct:   111 FVSHPREVRQIPIEVKDSSGPSGRSSDAPTIEDVTETAHVQGPVTTQGTVIIDEESDDDI 170

Query:   127 PAPPAAQSTLRNDGRSSPTAPAFDNLADYSNDXXXXXXXXXXXXSKQEAENVSGAGTEHR 186
             P  P  +S  R D  +   A   +N  DY ND            SK+EAE  S    E R
Sbjct:   171 PFAPMGRS--RQDRPAGSVAN--NNNQDY-NDIEEEMIRAAIEASKKEAEGSSNPLLEER 225

Query:   187 QPHLEDVD-LAHAVSLSLRTAEQEKAQRELXXXXXXXXXXXXKPSEMELGKVATSNGRLE 245
               H+ED D +A AV++SL++AE+E  + +               +          NGRL 
Sbjct:   226 PLHMEDDDDIAIAVTMSLKSAEEEVLRSQGYKASTSEIGASAVTAAQGPQDTQALNGRLA 285

Query:   246 GGSLSIQEETEDVEEQPLVRHRSIHTSSGSGESDKEVGVTEVSSPPSPGQPDVSNQPQHN 305
               S    ++++DV+EQPLVRHR    +SGS          + S   SP +   S  P   
Sbjct:   286 APSSPFDDDSDDVDEQPLVRHRPRRAASGSLAPPN----ADRSRSGSPEEEHASINPAER 341

Query:   306 GNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYR-FPYAPHQ-YMQPEGXXXXXXXX 363
             G+ FPS EWGGISSEEHDEAVMLEAAMFGGIPE+GY   P+ P Q   QP          
Sbjct:   342 GSGFPS-EWGGISSEEHDEAVMLEAAMFGGIPETGYNHLPFLPPQPRAQPRPPSPS---- 396

Query:   364 XXXXXLEAQRLIREQQDDEYLASLQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 423
                  L AQRLIREQQDDEY+ASLQAD                                 
Sbjct:   397 -----LTAQRLIREQQDDEYVASLQADRDKEMKSIRDAEARQLEEETARKAFLEEEKKKE 451

Query:   424 XXXXX-------YERQLAAKEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQS 476
                          ERQL AKEASLP+EP  D+ENA+TLL+RMPDG+RRGRRFLKS+KLQ+
Sbjct:   452 EEAQRKLEEEQELERQLDAKEASLPKEPQADEENAITLLIRMPDGTRRGRRFLKSDKLQT 511

Query:   477 LFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV 529
             LF++ID+ R +K  TYRLVRPYPR AF DGES  TLN+LGLTSKQEALFLEL+
Sbjct:   512 LFNFIDIARVVKPNTYRLVRPYPRHAFGDGESESTLNDLGLTSKQEALFLELI 564
GO:0005737 "cytoplasm" evidence=ISM
GO:0016192 "vesicle-mediated transport" evidence=TAS
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2127198 AT4G23040 "AT4G23040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955540 AT4G00752 "AT4G00752" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269774 DDB_G0269774 "UBX domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2132751 AT4G10790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UNN5 FAF1 "FAS-associated factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291259 DDB_G0291259 "UBX domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:109419 Faf1 "Fas-associated factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLG0 FAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2863 faf1 "Fas associated factor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00030950
SubName- Full=Putative uncharacterized protein; (590 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
pfam0078978 pfam00789, UBX, UBX domain 7e-20
cd0176777 cd01767, UBX, UBX (ubiquitin regulatory X) domain 5e-13
smart0016677 smart00166, UBX, Domain present in ubiquitin-regul 3e-11
cd0177180 cd01771, Faf1_UBX, Faf1 UBX domain 3e-09
cd0177279 cd01772, SAKS1_UBX, SAKS1-like UBX domain 7e-06
pfam06098288 pfam06098, Radial_spoke_3, Radial spoke protein 3 0.003
>gnl|CDD|216120 pfam00789, UBX, UBX domain Back     alignment and domain information 
 Score = 83.5 bits (207), Expect = 7e-20
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 449 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGES 508
           E+   L +R+PDGSR  RRF  S+ LQ ++D++D  R      + L   +PRR  +D + 
Sbjct: 1   EDVCRLQIRLPDGSRLVRRFNSSDPLQDVYDFVDSNRYDDDEPFSLNTNFPRRPLTDDDD 60

Query: 509 ALTLNELGLTSKQEALFLEL 528
             TL E GL      L LE 
Sbjct: 61  K-TLKEAGLL-PNSTLVLEP 78

This domain is present in ubiquitin-regulatory proteins and is a general Cdc48-interacting module. Length = 78
>gnl|CDD|176362 cd01767, UBX, UBX (ubiquitin regulatory X) domain Back     alignment and domain information
>gnl|CDD|197552 smart00166, UBX, Domain present in ubiquitin-regulatory proteins Back     alignment and domain information
>gnl|CDD|176366 cd01771, Faf1_UBX, Faf1 UBX domain Back     alignment and domain information
>gnl|CDD|176367 cd01772, SAKS1_UBX, SAKS1-like UBX domain Back     alignment and domain information
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 529
KOG1363460 consensus Predicted regulator of the ubiquitin pat 100.0
cd0177180 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac 99.83
cd0177382 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i 99.83
cd0177485 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i 99.81
smart0016680 UBX Domain present in ubiquitin-regulatory protein 99.79
cd0177279 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst 99.79
PF0078982 UBX: UBX domain; InterPro: IPR001012 The UBX domai 99.76
cd0176777 UBX UBX (ubiquitin regulatory X) domain. The UBX ( 99.75
cd0177079 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is 99.69
KOG2689290 consensus Predicted ubiquitin regulatory protein [ 99.65
KOG2507 506 consensus Ubiquitin regulatory protein UBXD2, cont 99.51
KOG2086380 consensus Protein tyrosine phosphatase SHP1/Cofact 98.92
KOG1364356 consensus Predicted ubiquitin regulatory protein, 98.92
cd0180676 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn 97.04
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 96.82
cd0180774 GDX_N ubiquitin-like domain of GDX. GDX contains a 96.5
cd0179280 ISG15_repeat1 ISG15 ubiquitin-like protein, first 96.48
PTZ0004476 ubiquitin; Provisional 96.45
cd0180972 Scythe_N Ubiquitin-like domain of Scythe protein. 96.41
cd0179173 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know 96.36
cd0180376 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 96.18
cd0179470 DC_UbP_C dendritic cell derived ubiquitin-like pro 96.13
cd0179870 parkin_N amino-terminal ubiquitin-like of parkin p 95.96
cd0180478 midnolin_N Ubiquitin-like domain of midnolin. midn 95.85
cd0180577 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo 95.81
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 95.76
cd0176387 Sumo Small ubiquitin-related modifier (SUMO). Smal 95.62
cd0181074 ISG15_repeat2 ISG15 ubiquitin-like protein, second 95.57
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 95.45
cd0180871 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC 95.1
cd01802103 AN1_N ubiquitin-like domain of AN1. AN1 (also know 94.79
cd0179671 DDI1_N DNA damage inducible protein 1 ubiquitin-li 94.57
cd01814113 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT 93.18
TIGR00601 378 rad23 UV excision repair protein Rad23. All protei 92.84
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 92.79
cd0179778 NIRF_N amino-terminal ubiquitin-like domain of Np9 92.71
cd0176969 UBL Ubiquitin-like domain of UBL. UBLs function by 92.67
cd0181374 UBP_N UBP ubiquitin processing protease. The UBP ( 92.18
PF13881111 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB 91.96
cd0179374 Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui 91.74
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 91.57
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 90.79
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 89.51
cd0180076 SF3a120_C Ubiquitin-like domain of Mammalian splic 88.57
cd0179975 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO 88.48
PF0280918 UIM: Ubiquitin interaction motif; InterPro: IPR003 81.2
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=9.6e-39  Score=338.95  Aligned_cols=392  Identities=29%  Similarity=0.344  Sum_probs=283.0

Q ss_pred             CCCCCCCccccccccCCCCCCCCCCCCCCCCCcccccceeecCCCCC---CCCCCcccccccccccCCCCCCcceeecCC
Q 009661           46 NPFSLLDPSSRRRFFDGASDFMSREPHVTHPREVREIPIEVRDGGDP---SGHAPTIEDVTESANTHGPDNRGTAIIDEV  122 (529)
Q Consensus        46 ~pf~lldp~~~r~~f~~~~~~~~r~p~vshprevr~ipievkd~~~~---s~~~p~iedvt~~~~~~gp~~~gtvi~d~~  122 (529)
                      +||.++||.|..+++++...  +|+++|.|+++++.+++.|++++..   +...++++||+.+.+.++| .++.+++|+.
T Consensus        54 ~~~~~vd~~~~~r~~~~~~~--~~~~~v~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~  130 (460)
T KOG1363|consen   54 DPFPVVDPDFNYRDDNVDVS--PRPNTVGESKEIRSNEGGVPSSNGLLGGWSDNRTTEDVLSLALSLLP-LQSIVGGDPS  130 (460)
T ss_pred             CccccccchhcccccCCCcc--cCCCcccccceeeccCCCccccccccccccccccccccchhhhhcCc-hhhccccCCC
Confidence            79999999998888883333  8999999999999999999999988   7788899999999999999 9999999987


Q ss_pred             CC-CCCCC-cc--------cccccCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhHHHHhhccCCCCCCCCCCCcc
Q 009661          123 DE-DIPAP-PA--------AQSTLRNDGRSSPTAPAFDNLADYSNDIEEEMIRAAIEASKQEAENVSGAGTEHRQPHLED  192 (529)
Q Consensus       123 ~~-~~~~~-~~--------~~~~~~~~~~~~p~~~~~~~~~~~~ndieeemiraaieask~~~~~~~~~~~~~~~~~~ed  192 (529)
                      .+ ++.++ .+        ..++.+...           +|.+.-|+   |--|+-||++++...- ..+.-  ..|   
T Consensus       131 ~~~~~~s~p~~~~~~~f~~~f~~ry~~~-----------~p~F~~d~---l~~a~~~A~~~~~~~~-~~l~~--~~~---  190 (460)
T KOG1363|consen  131 SGDNIVSTPQGDSRETFVDNFGDRYGSE-----------LPSFYTDV---LRNAFLEAFDRESEAR-KLLAI--YLH---  190 (460)
T ss_pred             CCCccccCCcchHHHHHHHHHHHhcCCC-----------CCccchhH---HHHHHHHHHhhhhhhh-eeeEE--ecC---
Confidence            65 66665 33        111222111           23333333   4446677777762211 11000  000   


Q ss_pred             chhhhhhhhhhhHHHHHHHHHHhcCcccccccCCCCCccccccccccCCCccCCCCCCccccccccccCccccccccccC
Q 009661          193 VDLAHAVSLSLRTAEQEKAQRELGGDVGASVAGASKPSEMELGKVATSNGRLEGGSLSIQEETEDVEEQPLVRHRSIHTS  272 (529)
Q Consensus       193 ~d~a~avslsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~pl~r~r~r~~~  272 (529)
                                                               .+ ....++.+....+..+...+...+++|+.++ .++.
T Consensus       191 -----------------------------------------~~-~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~-dvt~  227 (460)
T KOG1363|consen  191 -----------------------------------------DD-KSDDTNVFCGQILCNEAVVDYLRENFLLWGW-DVTE  227 (460)
T ss_pred             -----------------------------------------CC-CcccHHHHHHhhhhhHHHHHHHhhceeeecc-cccC
Confidence                                                     00 1122333555556667777778899999999 6666


Q ss_pred             CCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHhCCCCCCCCC-CCCCCCCCC
Q 009661          273 SGSGESDKEVGVTEVSSPPSPGQPDVSNQPQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYR-FPYAPHQYM  351 (529)
Q Consensus       273 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~f~~~ewggi~s~e~dea~mleaam~gg~p~~~~~-~~~~~~~~~  351 (529)
                      ++++-........  ++.....   +.+... +++.| |..|++|+++.++|++|+.++|+|++.+..+- .++..+.. 
T Consensus       228 ~e~~~~~~~~~~r--~~~~~~~---~~~~~~-~~~~f-P~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~-  299 (460)
T KOG1363|consen  228 SENLLVFNSLLNR--SISSPAA---VTNKAS-KSERF-PLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEER-  299 (460)
T ss_pred             chhhHHHHHHhhc--ccchhhh---hhcchh-hcccC-chhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhH-
Confidence            6666655555555  2221111   112333 67887 99999999999999999999999999885543 33322222 


Q ss_pred             CCCCCCCCCCCCCCCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009661          352 QPEGSYPRRVPRPPSPSLEAQRLIREQ-QDDEYLASLQADREKAEARRLMEEEARNAALAEERRKEEETRRKMEEQQEYE  430 (529)
Q Consensus       352 ~~~~~~~~~i~R~~~~~le~~R~LREE-QD~aY~eSLraDrEK~e~rr~EEe~aR~aaeEeeR~keEE~~rk~ee~eele  430 (529)
                             ..+.+...+...++|+++++ ||.+|++||++|+.|+.+++   +++.++.++++|       +.++++++..
T Consensus       300 -------~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~e---~~~e~~r~e~er-------~~~~ee~e~~  362 (460)
T KOG1363|consen  300 -------RLQMRRSEQDEREARLALEQEQDDEYQASLEADRVREAEAE---QAAEEFRLEKER-------KEEEEERETA  362 (460)
T ss_pred             -------HHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhhHHHHHhhhh-------hhHHHHHHHH
Confidence                   12556777777777776665 59999999999999922111   111111122222       2223446677


Q ss_pred             HHHHHHHccCCCCCCCCCCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCccc
Q 009661          431 RQLAAKEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESAL  510 (529)
Q Consensus       431 r~r~~K~asLPpEP~a~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~  510 (529)
                      +++.|+..+||+||.+...++++|+||||+|.+..|||.+++++++||+||+++ +..+..|.|+++|||++|.......
T Consensus       363 R~~l~~es~lp~EP~a~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~-~~~~~e~~~~~~fPr~~~~~~~~~~  441 (460)
T KOG1363|consen  363 RQLLALESSLPPEPSASEEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSN-GFHPEEYSLNTSFPRRPLGDYEHSS  441 (460)
T ss_pred             HHHHhhhccCCCCCCcCcccceeeEEECCCCCeeeeeeecccchhHHHHHHHhc-cCCchhhccccCCCccccccccccc
Confidence            889999999999998888899999999999999999999999999999999854 5788999999999999999988899


Q ss_pred             chhhcCCCCCceeEEEeeC
Q 009661          511 TLNELGLTSKQEALFLELV  529 (529)
Q Consensus       511 TLeElGL~PsqaaL~VE~i  529 (529)
                      ||+++||+|+|++||||.+
T Consensus       442 sl~~~~l~p~qe~lflE~~  460 (460)
T KOG1363|consen  442 SLQDIGLTPRQETLFLEEI  460 (460)
T ss_pred             ccccCCcccccceeeeecC
Confidence            9999999997899999975

>cd01771 Faf1_UBX Faf1 UBX domain Back     alignment and domain information
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain Back     alignment and domain information
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain Back     alignment and domain information
>smart00166 UBX Domain present in ubiquitin-regulatory proteins Back     alignment and domain information
>cd01772 SAKS1_UBX SAKS1-like UBX domain Back     alignment and domain information
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast Back     alignment and domain information
>cd01767 UBX UBX (ubiquitin regulatory X) domain Back     alignment and domain information
>cd01770 p47_UBX p47-like ubiquitin domain Back     alignment and domain information
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only] Back     alignment and domain information
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure] Back     alignment and domain information
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01806 Nedd8 Nebb8-like ubiquitin protein Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information
>cd01807 GDX_N ubiquitin-like domain of GDX Back     alignment and domain information
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 Back     alignment and domain information
>PTZ00044 ubiquitin; Provisional Back     alignment and domain information
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein Back     alignment and domain information
>cd01791 Ubl5 UBL5 ubiquitin-like modifier Back     alignment and domain information
>cd01803 Ubiquitin Ubiquitin Back     alignment and domain information
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein Back     alignment and domain information
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein Back     alignment and domain information
>cd01804 midnolin_N Ubiquitin-like domain of midnolin Back     alignment and domain information
>cd01805 RAD23_N Ubiquitin-like domain of RAD23 Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information
>cd01763 Sumo Small ubiquitin-related modifier (SUMO) Back     alignment and domain information
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 Back     alignment and domain information
>cd01802 AN1_N ubiquitin-like domain of AN1 Back     alignment and domain information
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain Back     alignment and domain information
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4 Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF Back     alignment and domain information
>cd01769 UBL Ubiquitin-like domain of UBL Back     alignment and domain information
>cd01813 UBP_N UBP ubiquitin processing protease Back     alignment and domain information
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A Back     alignment and domain information
>cd01793 Fubi Fubi ubiquitin-like protein Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 Back     alignment and domain information
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
2cr5_A109 Solution Structure Of The Ubx Domain Of D0h8s2298e 4e-07
3qq8_B85 Crystal Structure Of P97-N In Complex With Faf1-Ubx 4e-06
3qx1_A84 Crystal Structure Of Faf1 Ubx Domain Length = 84 5e-06
1h8c_A82 Ubx Domain From Human Faf1 Length = 82 5e-06
3qca_A84 Crystal Structure Of Faf1 Ubx Domain In Complex Wit 5e-06
3qwz_B84 Crystal Structure Of Faf1 Ubx-P97n-Domain Complex L 1e-05
>pdb|2CR5|A Chain A, Solution Structure Of The Ubx Domain Of D0h8s2298e Protein Length = 109 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 440 LPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYP 499
           LP+EP+   E  VT+ +R P+G    RRF KS   Q L D++ +  G     YRL   +P
Sbjct: 12  LPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWM-MKVGYHKSLYRLSTSFP 70
Query: 500 RRAFSDGESALTLNELGLT 518
           RRA  + E   +L ++G+T
Sbjct: 71  RRAL-EVEGGSSLEDIGIT 88
>pdb|3QQ8|B Chain B, Crystal Structure Of P97-N In Complex With Faf1-Ubx Length = 85 Back     alignment and structure
>pdb|3QX1|A Chain A, Crystal Structure Of Faf1 Ubx Domain Length = 84 Back     alignment and structure
>pdb|1H8C|A Chain A, Ubx Domain From Human Faf1 Length = 82 Back     alignment and structure
>pdb|3QCA|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn Motif Of Ubx Domain Suffering Conformational Change Length = 84 Back     alignment and structure
>pdb|3QWZ|B Chain B, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex Length = 84 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
2cr5_A109 Reproduction 8; UBX domain, D0H8S2298E protein, st 3e-24
3qx1_A84 FAS-associated factor 1; UBX, protein binding, P97 5e-23
1wj4_A124 KIAA0794 protein; UBX domain, beta-grAsp fold, str 6e-19
2dzk_A109 UBX domain-containing protein 2; ubiquitin-like fo 2e-17
1s3s_G127 P47 protein; AAA ATPase, protein-protein complex, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-05
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Length = 109 Back     alignment and structure
 Score = 96.4 bits (240), Expect = 3e-24
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 434 AAKEASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYR 493
           + +   LP+EP+   E  VT+ +R P+G    RRF KS   Q L D++    G     YR
Sbjct: 6   SGEVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYR 64

Query: 494 LVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 527
           L   +PRRA    E   +L ++G+T     L +E
Sbjct: 65  LSTSFPRRALEV-EGGSSLEDIGIT-VDTVLNVE 96
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Length = 84 Back     alignment and structure
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Length = 124 Back     alignment and structure
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Length = 109 Back     alignment and structure
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query529
2cr5_A109 Reproduction 8; UBX domain, D0H8S2298E protein, st 99.85
2dzk_A109 UBX domain-containing protein 2; ubiquitin-like fo 99.8
3qx1_A84 FAS-associated factor 1; UBX, protein binding, P97 99.8
1wj4_A124 KIAA0794 protein; UBX domain, beta-grAsp fold, str 99.77
1s3s_G127 P47 protein; AAA ATPase, protein-protein complex, 99.63
2kzr_A86 Ubiquitin thioesterase OTU1; structural genomics, 98.5
2pjh_A80 Protein NPL4, nuclear protein localization protein 97.22
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 97.17
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 96.82
1wju_A100 NEDD8 ultimate buster-1; ubiquitin-like domain, st 96.8
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 96.77
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 96.7
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 96.65
3v6c_B91 Ubiquitin; structural genomics, structural genomic 96.57
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 96.52
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 96.52
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 96.46
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 96.43
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 96.41
1wjn_A97 Tubulin-folding protein TBCE; ubiquitin-like domai 96.33
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 96.24
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 96.21
4hcn_B98 Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas 96.16
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 96.14
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 96.09
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 96.06
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 96.04
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 95.99
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 95.97
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 95.95
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 95.95
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 95.92
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 95.88
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 95.87
1we6_A111 Splicing factor, putative; structural genomics, ub 95.74
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 95.68
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 95.67
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 95.67
1wia_A95 Hypothetical ubiquitin-like protein (riken cDNA 20 95.67
2klc_A101 Ubiquilin-1; ubiquitin-like, structural genomics, 95.62
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 95.57
3vdz_A111 Ubiquitin-40S ribosomal protein S27A; gadolinium, 95.54
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 95.51
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 95.49
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 95.42
2kk8_A84 Uncharacterized protein AT4G05270; solution arabid 95.38
3m62_B106 UV excision repair protein RAD23; armadillo-like r 95.34
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 95.29
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 95.26
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 94.83
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 94.82
1v86_A95 DNA segment, CHR 7, wayne state university 128, ex 94.78
2kjr_A95 CG11242; UBL, ubiquitin, ubiquitin-like, structura 94.69
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 94.67
1wxv_A92 BAG-family molecular chaperone regulator-1; struct 94.67
4a20_A98 Ubiquitin-like protein MDY2; protein binding, GET- 94.63
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 94.51
1q0v_A81 Hydrophilic protein; has cysteine rich putative zi 94.34
1wgd_A93 Homocysteine-responsive endoplasmic reticulum- res 94.31
3plu_A93 Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- 94.2
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 94.04
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 93.94
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 92.98
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 93.84
1x1m_A107 Ubiquitin-like protein SB132; structural genomics, 93.8
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 93.76
1wgg_A96 Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti 93.73
1v2y_A105 3300001G02RIK protein; hypothetical protein, ubiqu 93.67
2lxa_A87 Ubiquitin-like protein MDY2; ubiquitin-like domain 93.61
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 93.14
2gow_A125 HCG-1 protein, ubiquitin-like protein 3; BC059385, 93.12
2d07_B93 Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho 93.04
1wz0_A104 Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li 93.04
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 92.9
1v5t_A90 8430435I17RIK protein; hypothetical protein, ubiqu 92.89
3a4r_A79 Nfatc2-interacting protein; ubiquitin fold, coiled 92.86
2io0_B91 Small ubiquitin-related modifier 2 precursor; SUMO 92.75
2kdb_A99 Homocysteine-responsive endoplasmic reticulum- res 92.72
2kj6_A97 Tubulin folding cofactor B; methods development, N 92.68
2eke_C106 Ubiquitin-like protein SMT3; UBC9, SUMO binding mo 92.59
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 92.58
1wm3_A72 Ubiquitin-like protein SMT3B; ubiquitin fold, half 92.51
2io1_B94 Small ubiquitin-related modifier 3 precursor; SUMO 92.46
2k8h_A110 Small ubiquitin protein; SUMO, post-translational 92.21
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 91.87
2dzj_A88 Synaptic glycoprotein SC2; ubiquitin-like fold, st 91.84
1wf9_A107 NPL4 family protein; beta-grAsp fold like domain, 91.59
1se9_A126 Ubiquitin family; ubiquitin-like, cell-free, wheat 91.33
3ai5_A307 Yeast enhanced green fluorescent protein, ubiquit; 90.84
1oqy_A 368 HHR23A, UV excision repair protein RAD23 homolog A 90.78
1v6e_A95 Cytoskeleton-associated protein 1; tubulin-specifi 90.74
2kc2_A128 Talin-1, F1; FERM, adhesion, cell membrane, cell p 90.36
1wgh_A116 Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo 90.25
2daf_A118 FLJ35834 protein; hypothetical protein FLJ35834, u 90.12
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 90.0
1t0y_A122 Tubulin folding cofactor B; ubiquitin-like, cytosk 88.0
4b6w_A86 Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik 87.94
3u5c_f152 40S ribosomal protein S31; translation, ribosome, 86.31
3kyd_D115 Small ubiquitin-related modifier 1; SUMO, thioeste 86.21
2fnj_B118 Transcription elongation factor B polypeptide 2; b 83.62
3pge_A200 SUMO-modified proliferating cell nuclear antigen; 83.09
2dzm_A100 FAS-associated factor 1; ubiquitin-like domain, HF 82.76
3shq_A 320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 81.71
3tix_A207 Ubiquitin-like protein SMT3, RNA-induced transcri 80.68
2daj_A91 KIAA0977 protein, COBL-like 1; ubiquitin-like doma 80.57
4dbg_A105 Ranbp-type and C3HC4-type zinc finger-containing; 80.22
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
Probab=99.85  E-value=1.4e-21  Score=170.40  Aligned_cols=90  Identities=36%  Similarity=0.571  Sum_probs=81.8

Q ss_pred             HccCCCCCCCCCCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcC
Q 009661          437 EASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELG  516 (529)
Q Consensus       437 ~asLPpEP~a~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElG  516 (529)
                      ...||+||..+..+.|+|+||||||+|++|||+.+++|++||+||++. ++.+..|.|+++||||+|.. |.++||+|+|
T Consensus         9 ~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~-d~~~TL~e~g   86 (109)
T 2cr5_A            9 VPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEV-EGGSSLEDIG   86 (109)
T ss_dssp             CCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCC-CSSCBHHHHT
T ss_pred             cccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCC-CCCCCHHHcC
Confidence            468999999888899999999999999999999999999999999954 56788999999999999964 6799999999


Q ss_pred             CCCCceeEEEeeC
Q 009661          517 LTSKQEALFLELV  529 (529)
Q Consensus       517 L~PsqaaL~VE~i  529 (529)
                      |+| +++|+|+.+
T Consensus        87 L~p-~a~L~Ve~~   98 (109)
T 2cr5_A           87 ITV-DTVLNVEEK   98 (109)
T ss_dssp             CSS-CEEEEEEEC
T ss_pred             CCC-CeEEEEEeC
Confidence            998 599999864
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Back     alignment and structure
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Back     alignment and structure
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Back     alignment and structure
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Back     alignment and structure
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Back     alignment and structure
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Back     alignment and structure
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I Back     alignment and structure
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Back     alignment and structure
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Back     alignment and structure
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A Back     alignment and structure
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Back     alignment and structure
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A Back     alignment and structure
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Back     alignment and structure
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Back     alignment and structure
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Back     alignment and structure
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Back     alignment and structure
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B Back     alignment and structure
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Back     alignment and structure
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} Back     alignment and structure
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Back     alignment and structure
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Back     alignment and structure
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} Back     alignment and structure
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f Back     alignment and structure
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Back     alignment and structure
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Back     alignment and structure
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 529
d2cr5a196 d.15.1.2 (A:8-103) UBX domain-containing protein 6 5e-15
d1h8ca_82 d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human 9e-15
d1i42a_89 d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 2e-12
d1wj4a_124 d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human 2e-11
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.4 bits (167), Expect = 5e-15
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 438 ASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP 497
             LP+EP+   E  VT+ +R P+G    RRF KS   Q L D++      K+        
Sbjct: 3   PDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLS-TS 61

Query: 498 YPRRAFSDGESALTLNELGLTSKQEALFLE 527
           +PRRA    E   +L ++G+T     L +E
Sbjct: 62  FPRRALEV-EGGSSLEDIGIT-VDTVLNVE 89
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 89 Back     information, alignment and structure
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query529
d2cr5a196 UBX domain-containing protein 6 (Reproduction 8) { 99.84
d1h8ca_82 Fas-associated factor 1, Faf1 {Human (Homo sapiens 99.8
d1wj4a_124 Hypothetical protein KIAA0794 {Human (Homo sapiens 99.77
d1i42a_89 p47 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.69
d1s3si_50 p47 {Rat (Rattus norvegicus) [TaxId: 10116]} 98.08
d1wgha_116 Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu 96.66
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 96.39
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 96.31
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 96.24
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 96.13
d1z2ma176 Interferon-induced 15 kDa protein {Human (Homo sap 96.07
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 96.0
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 95.99
d2zeqa178 Ubiquitin-like domain of parkin {Mouse (Mus muscul 95.75
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 95.66
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 95.62
d1ogwa_76 Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} 95.36
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 95.16
d1oqya477 Ubiquitin-like domain of Rad23 homolog A (Hhr23a) 95.13
d1se9a_101 Hypothetical protein At3g01050 {Thale cress (Arabi 95.11
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 95.04
d1v86a_95 hypothetical D7wsu128e protein {Mouse (Mus musculu 94.62
d1we6a_111 Splicing factor 3 subunit 1, C-terminal domain {Th 94.57
d2bwfa173 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 94.52
d1uela_95 Ubiquitin-like domain of Rad23 homolog B (Hhr23B) 94.5
d1wx8a183 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 94.49
d2uyzb177 SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax 94.09
d2faza176 Ubiquitin-like PHD and RING finger domain-containi 93.66
d1wiaa_95 Ubiquitin-like protein bab25500 (2010008E23Rik) {M 93.4
d1wgga_96 Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M 93.09
d1wx9a173 Large proline-rich protein BAT3 {Human (Homo sapie 92.78
d1v5ta_90 8430435i17rik protein {Mouse (Mus musculus) [TaxId 92.77
d1zkha186 Splicing factor 3 subunit 1, C-terminal domain {Hu 92.63
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 92.16
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 90.9
d1wxva181 Bag-family molecular chaperone regulator-1 {Human 90.64
d1v5oa_102 1700011n24rik protein {Mouse (Mus musculus) [TaxId 89.68
d1v2ya_105 Ubiquitin-like protein 3300001g02rik {Mouse (Mus m 86.68
d1v6ea_95 Ubiquitin-like domain of tubulin folding cofactor 86.1
d1wgda_93 Homocysteine-responsive endoplasmic reticulum-resi 85.89
d1wm3a_72 SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} 85.2
d1t0ya_90 Ubiquitin-like domain of tubulin folding cofactor 84.6
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.3e-21  Score=160.79  Aligned_cols=88  Identities=36%  Similarity=0.596  Sum_probs=80.3

Q ss_pred             ccCCCCCCCCCCCcEEEEEECCCCCEEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCC
Q 009661          438 ASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGL  517 (529)
Q Consensus       438 asLPpEP~a~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~fPRRvft~eD~s~TLeElGL  517 (529)
                      ..||+||..+.+++|+|+||||||++++|||+++++|++||+||.++ +.....|.|+++|||+.|.. |.++||+|+||
T Consensus         3 ~~lp~EP~~~~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~-d~~~TL~e~gl   80 (96)
T d2cr5a1           3 PDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEV-EGGSSLEDIGI   80 (96)
T ss_dssp             CCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCC-CSSCBHHHHTC
T ss_pred             CCCCCCCCCCCCCeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCc-cCCCcHHHCCC
Confidence            46899999988999999999999999999999999999999999864 56788999999999999975 56899999999


Q ss_pred             CCCceeEEEee
Q 009661          518 TSKQEALFLEL  528 (529)
Q Consensus       518 ~PsqaaL~VE~  528 (529)
                      +|+ ++|+|+.
T Consensus        81 ~p~-~~L~v~~   90 (96)
T d2cr5a1          81 TVD-TVLNVEE   90 (96)
T ss_dssp             SSC-EEEEEEE
T ss_pred             CCC-CEEEEec
Confidence            985 9999985
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure