Citrus Sinensis ID: 009665

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
Protein Sequence
MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccEcccccccccccccccc
Coil and Loop (DISEMBL)
mslrpnartevrrSKYKVAvdaeegrrrrEDNMVEIRKNKREESLLKKRREGlqahqpltnsaaldnkkleslpamvagvwsddrniqLDATTQFRKLLSiersppineviqsgvvprfieflsrddfpqLQFEAAWALTniasgtsentrvvidhgAVPIFVRLlssptddvREQAVWALGnvagdspkcrdlvlsngalmPLLAQFNEHAKLSMLRNATWTlsnfcrgkpqplfeqtrpalpaLERLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVCPRLvellrhpspsvlipalrtvgnivtgddmqtqciinhqalPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISnatsggsneQIKFLVSqgcikplcdllncpdpriVTVCLEGLENILKAGEAeknmgntggvNLFAQAIDDAEGLEKIEnlqshdntEIYEKAVKILETYwveededeplppgdatqagfgfagnglpvpsggfnfg
Flexible Loop (DISEMBL)
mslrpnartevrrskykvavdaeegrrrrednmveirknkreesllkkrreglqahqpltnsaaldnkklESLPAMVAGVWSDDRNIQLDATTQFRKLlsiersppineviqsGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAlgnvagdspKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLrhpspsvlipALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEnlqshdnteiYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Low Complexity Region (SEG)
MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNqiqaiieagiigPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVeededeplppgdATQAGFGFAGNGLPVPSGGFNFG
Disordered region (IsUnstruct)
*************************************************************************PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE**********************************
Disordered Region (DISOPRED)
***********************************************************************SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPL***********************FNF*
Disordered Region (DISEMBL)
*************SKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Disordered Region (DISPRO)
*******************VD*EEGRRRREDNMVEIRKNKREESLL*K****************LD*KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	529	2.2.26 [Sep-21-2011]
O22478	527	Importin subunit alpha OS	N/A	no	0.990	0.994	0.816	0.0
Q96321	532	Importin subunit alpha-1	yes	no	0.998	0.992	0.804	0.0
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.941	0.946	0.848	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.996	0.986	0.787	0.0
O04294	531	Importin subunit alpha-2	no	no	0.994	0.990	0.736	0.0
Q76P29	516	Importin subunit alpha-B	yes	no	0.945	0.968	0.608	1e-175
O35345	536	Importin subunit alpha-7	yes	no	0.905	0.893	0.570	1e-149
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.905	0.893	0.570	1e-149
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.905	0.893	0.568	1e-148
O60684	536	Importin subunit alpha-7	yes	no	0.905	0.893	0.568	1e-148

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/530 (81%), Positives = 480/530 (90%), Gaps = 6/530 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRPN+RTE RRS+YKVAVDAEEGRRRREDNMVEIRKNKREE+LLKKRREGL   Q   
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60

Query: 61  NSAALD--NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
           ++AA+   +KKLE+LP ++AGVWSDD ++QL+ TTQFRKLLSIER+PPI EVIQSGVVPR
Sbjct: 61  STAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPR 120

Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
           F+EFL+RDD+PQLQFEAAWALTNIASGTSENT+VVID+G+VPIF+RLLSSP+DDVREQAV
Sbjct: 121 FVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAV 180

Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
           WALGN+AGDSPK RDLVL +GAL+ LLAQFNE AKLSMLRNATWTLSNFCRGKPQPLFEQ
Sbjct: 181 WALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQ 240

Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
           T+ ALP L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELL H SPS
Sbjct: 241 TKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPS 300

Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
           VLIPALRTVGNIVTGDD+QTQ +I+H ALPCL++LLTQNYKKSIKKEACWTISNITAGN 
Sbjct: 301 VLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNR 360

Query: 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418
           NQIQ +IEAGII PLV LL NAEFEIKKEAAWAISNATSGG+++QIKFLVSQGCIKPLCD
Sbjct: 361 NQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCD 420

Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 478
           LL CPDPRIVTVCLEGLENILK GEA+K++GNT GVN++AQ ID+AEGLEKIENLQSHDN
Sbjct: 421 LLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDN 480

Query: 479 TEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 528
           TEIYEKAVKILETYW+EE ED P+      +  F F G  + +PSGGFNF
Sbjct: 481 TEIYEKAVKILETYWLEE-EDVPV---SLNEDQFEFGGADISLPSGGFNF 526

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.
Solanum lycopersicum (taxid: 4081)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/531 (80%), Positives = 481/531 (90%), Gaps = 3/531 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPL- 59
           MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL+KKRREG+QA Q   
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query: 60  TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
           + SAA  +KKL+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPRF
Sbjct: 61  SASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           +EFL ++D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVW
Sbjct: 121 VEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSP+CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q 
Sbjct: 181 ALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQV 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           +PALPALERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSV
Sbjct: 241 KPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKD 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
           QIQ ++EA +I PLV+LL NAEF+IKKEAAWAISNATSGGS++QIK+LV QGCIKPLCDL
Sbjct: 361 QIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDL 420

Query: 420 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
           L CPDPRI+TVCLEGLENILK GEAEKN+G+TG +N +AQ IDDAEGLEKIENLQSHDN 
Sbjct: 421 LVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNN 480

Query: 480 EIYEKAVKILETYWVEEDEDEP-LPPG-DATQAGFGFAGNGLPVPSGGFNF 528
           EIYEKAVKILETYW+EE++DE   PPG D +QAGF F GN  PVPSGGFNF
Sbjct: 481 EIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF 531

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/500 (84%), Positives = 462/500 (92%), Gaps = 2/500 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
            SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 61  ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 121 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
           QIQA+I AGIIGPLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDL
Sbjct: 361 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 420

Query: 420 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
           L CPD RIVTVCLEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN 
Sbjct: 421 LICPDIRIVTVCLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNN 479

Query: 480 EIYEKAVKILETYWVEEDED 499
           EIYEKAVKILE YW++E++D
Sbjct: 480 EIYEKAVKILEAYWMDEEDD 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/536 (78%), Positives = 468/536 (87%), Gaps = 9/536 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGL------- 53
           MSLRP+ R EVRRS+YKVAVDA+EGRRRREDNMVEIRK++REESLLKKRR+GL       
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 54  QAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS 113
            A  PL   ++   +KLE LPAMV  V SDD  +QL+ATTQFRKLLSIERSPPI EVI +
Sbjct: 61  AAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120

Query: 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDV 173
           GVVPRFI FL R+D+PQLQFEAAWALTNIASGTS+NT+VV++ GAVPIFV+LLSSP++DV
Sbjct: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180

Query: 174 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233
           REQAVWALGNVAGDSPKCRDLVL++G L PLL Q NEHAKLSMLRNATWTLSNFCRGKPQ
Sbjct: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240

Query: 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293
           P FEQ +PAL AL+RLIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL 
Sbjct: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300

Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
           HPS SVLIPALRTVGNIVTGDDMQTQC+I+HQALPCLL+LLT N+KKSIKKEACWTISNI
Sbjct: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360

Query: 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 413
           TAGN  QIQA+I A II PLV+LL  AEF+IKKEAAWAISNATSGG+++QIK+LV+QGCI
Sbjct: 361 TAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCI 420

Query: 414 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 473
           KPLCDLL CPDPRIVTVCLEGLENILK GEAEKN+G  G VN +AQ IDDAEGLEKIENL
Sbjct: 421 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG-AGDVNSYAQMIDDAEGLEKIENL 479

Query: 474 QSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 529
           QSHDNTEIYEKAVK+LE+YW+EE ED+ +P GD  Q GF F      VPSGGFNFG
Sbjct: 480 QSHDNTEIYEKAVKMLESYWLEE-EDDAMPSGDNAQNGFNFGNQQPNVPSGGFNFG 534

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/532 (73%), Positives = 454/532 (85%), Gaps = 6/532 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+A+TEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREE+L KKR     A    T
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 61  NSAALD----NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
                D    N+  ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVV
Sbjct: 61  GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
           PR ++FLSRDDFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQ
Sbjct: 121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           AVWALGNVAGDSPKCRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P F
Sbjct: 181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
           EQT+PALP LERL+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H S
Sbjct: 241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
           PSVLIPALRT+GNIVTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAG
Sbjct: 301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 416
           N +QIQA+I+AGII  LV +L +AEFE+KKEAAW ISNATSGG+++QIKF+VSQGCIKPL
Sbjct: 361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPL 420

Query: 417 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476
           CDLL CPD ++VTVCLE LENIL  GEAEKN+G+TG  NL+AQ ID+AEGLEKIENLQSH
Sbjct: 421 CDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSH 480

Query: 477 DNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 528
           DN +IY+KAVKILET+W E++E+E      A Q+GF F      VP G FNF
Sbjct: 481 DNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  614 bits (1584), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 311/511 (60%), Positives = 393/511 (76%), Gaps = 11/511 (2%)

Query: 7   ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD 66
           ++ E R+S+YK ++D++E RR+RE+  + IRKNKREESLLKKR + +    P+    +L 
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPV-KVDSLI 62

Query: 67  NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 126
           N++LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL   
Sbjct: 63  NQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQ 122

Query: 127 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186
           DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+AG
Sbjct: 123 DFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAG 182

Query: 187 DSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244
           DS  CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +LP
Sbjct: 183 DSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLP 242

Query: 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304
            L +LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  PAL
Sbjct: 243 VLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPAL 302

Query: 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364
           RT+GNIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ NQIQ +
Sbjct: 303 RTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQV 361

Query: 365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 424
           I+A II  LV LL NAEFEI+KEAAWAISNATS G+ +QI FLVSQGC+KPLCDLL   D
Sbjct: 362 IDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSD 421

Query: 425 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 484
           PRI+ V LEG+ENIL AG+ E       GVN + + I+DA+GL KI +LQ H N + +EK
Sbjct: 422 PRIINVALEGIENILVAGKKE---AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEK 478

Query: 485 AVKILETYWVEEDEDEPLPPGDATQAGFGFA 515
             +I+ TY  +E EDE    GD    G  F+
Sbjct: 479 VSRIISTYLEDEQEDE----GDLMPEGSSFS 505

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  529 bits (1363), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/491 (57%), Positives = 348/491 (70%), Gaps = 12/491 (2%)

Query: 34  VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
           +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD +
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 87  IQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
           TS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLL 215

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
               +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
           LSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD+QTQ I+N 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
            ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L+ +L  AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 444
           +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L GLENIL+ GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 445 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPP 504
           E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+  ED+D  L P
Sbjct: 455 ESKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAP 513

Query: 505 G-DATQAGFGF 514
             D TQ  F F
Sbjct: 514 QVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/491 (57%), Positives = 348/491 (70%), Gaps = 12/491 (2%)

Query: 34  VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
           +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD +
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPD 95

Query: 87  IQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
           TS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
               +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
           LSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD+QTQ I+N 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
            ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L+ +L  AEF  
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 444
           +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L GLENIL+ GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 445 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPP 504
           E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+  ED+D  L P
Sbjct: 455 EGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAP 513

Query: 505 G-DATQAGFGF 514
             D TQ  F F
Sbjct: 514 QVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  524 bits (1349), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/491 (56%), Positives = 347/491 (70%), Gaps = 12/491 (2%)

Query: 34  VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
           +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD +
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 87  IQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +QL  T +FRKLLS E SPPI+EVI +  VV RF+EFL R++   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
           TS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
               +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
           LSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD+QTQ I+N 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
            ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L+ +L  AEF  
Sbjct: 336 SALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 444
           +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L GLENIL+ GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 445 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPP 504
           E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+  ED+D  L P
Sbjct: 455 EGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAP 513

Query: 505 G-DATQAGFGF 514
             D TQ  F F
Sbjct: 514 QVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  524 bits (1349), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/491 (56%), Positives = 347/491 (70%), Gaps = 12/491 (2%)

Query: 34  VEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPA-------MVAGVWSDDRN 86
           +++RK KRE+ L K+R   L   +     + L +  + S          MV  ++SDD +
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 87  IQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +QL  T +FRKLLS E SPPI+EVI +  VV RF+EFL R++   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
           TS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264
               +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324
           LSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD+QTQ I+N 
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384
            ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L+ +L  AEF  
Sbjct: 336 SALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRT 394

Query: 385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 444
           +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L GLENIL+ GE 
Sbjct: 395 RKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 454

Query: 445 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPP 504
           E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+  ED+D  L P
Sbjct: 455 EGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAP 513

Query: 505 G-DATQAGFGF 514
             D TQ  F F
Sbjct: 514 QVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
255542844	531	importin alpha, putative [Ricinus commun	0.992	0.988	0.863	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.992	0.990	0.859	0.0
224122988	529	predicted protein [Populus trichocarpa]	0.996	0.996	0.850	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.994	0.990	0.853	0.0
224128392	538	predicted protein [Populus trichocarpa]	0.998	0.981	0.841	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.994	0.990	0.855	0.0
224123916	529	predicted protein [Populus trichocarpa]	0.998	0.998	0.841	0.0
225437493	529	PREDICTED: importin subunit alpha [Vitis	0.996	0.996	0.860	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.996	0.990	0.847	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.992	0.990	0.842	0.0

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/533 (86%), Positives = 499/533 (93%), Gaps = 8/533 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPL- 59
           MSLRP+ARTEVRR++YKVAVDAEEGRRRREDNMVEIRKN+REESL KKRREGLQA QP+ 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQA-QPMP 59

Query: 60  --TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
              +S+A++ KKLE LP+MVAGVWSDD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVP
Sbjct: 60  ASLHSSAVE-KKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVP 118

Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
           RF+EFL R+DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV+LL+SP+DDVREQA
Sbjct: 119 RFVEFLMREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQA 178

Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237
           VWALGNVAGDSPKCRDLVL NGAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FE
Sbjct: 179 VWALGNVAGDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFE 238

Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
           Q +PALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 239 QVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 298

Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
           SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGN 358

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 417
             QIQA+IEA IIGPLV+LL NAEF+IKKEAAWAISNATSGG+++QIK+LVSQGCIKPLC
Sbjct: 359 KEQIQAVIEANIIGPLVHLLENAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLC 418

Query: 418 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNT-GGVNLFAQAIDDAEGLEKIENLQSH 476
           DLL CPDPRIVTVCLEGLENILK GEA+KN+GN  GGVNL+AQ IDDAEGLEKIENLQSH
Sbjct: 419 DLLICPDPRIVTVCLEGLENILKVGEADKNLGNNDGGVNLYAQMIDDAEGLEKIENLQSH 478

Query: 477 DNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 528
           DN EIYEKAVKILETYW+EE EDE +PPGDA+Q+GF F G+ +P +PSGGFNF
Sbjct: 479 DNIEIYEKAVKILETYWLEE-EDETMPPGDASQSGFQFGGSDMPTIPSGGFNF 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/532 (85%), Positives = 488/532 (91%), Gaps = 7/532 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--- 57
           MSLRPNARTE+RR++YKVAVDA+EGRRRREDNMVEIRK+KREESLLKKRREGLQA Q   
Sbjct: 1   MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFP 60

Query: 58  -PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
            PL NS    +KKLESLPAMVAGVWSDD +IQL+ATTQFRKLLSIERSPPI EVIQ+GVV
Sbjct: 61  APLQNSTV--DKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVV 118

Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
           PRF+EFL R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQ
Sbjct: 119 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 178

Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           AVWALGNVAGDSP+CRDLVLS GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F
Sbjct: 179 AVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 238

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
           EQ RPALPALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLV+LL HPS
Sbjct: 239 EQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPS 298

Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
           PSVLIPALRTVGNIVTGDDMQTQCIINH ALPCLL+LLT N+KKSIKKEACWTISNITAG
Sbjct: 299 PSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAG 358

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 416
           N  QIQ +IEAG++ PLVNLL NAEF+IKKEAAWAISNATSGG +EQIK+LVSQGCIKPL
Sbjct: 359 NKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVSQGCIKPL 418

Query: 417 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476
           CDLL CPDPRIVTVCLEGLENILK GEAEK++GNTG VN +AQ IDDAEGLEKIENLQSH
Sbjct: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNEYAQMIDDAEGLEKIENLQSH 478

Query: 477 DNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 528
           DN EIYEKAVKILETYW+EE EDE LP GD  Q GF F  N LPVPSGGFNF
Sbjct: 479 DNNEIYEKAVKILETYWLEE-EDETLPSGDGAQPGFNFGNNELPVPSGGFNF 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122988|ref|XP_002318966.1| predicted protein [Populus trichocarpa] gi|222857342|gb|EEE94889.1| predicted protein [Populus trichocarpa]

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/529 (85%), Positives = 490/529 (92%), Gaps = 2/529 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAH-QPL 59
           MSLRP+ARTEVRR++YKVAVDAEEGRRRREDNMVEIRKN+REESL KKRREGLQA   P 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQAQAMPA 60

Query: 60  TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
           +  ++   KKLE LP+MVAGVW++D N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF
Sbjct: 61  SLHSSAAEKKLEHLPSMVAGVWTEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQAVW
Sbjct: 121 VQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSP+CRDLVL NGAL+PLLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F+Q 
Sbjct: 181 ALGNVAGDSPRCRDLVLGNGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQV 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           +PALPAL RLIHS+D+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 KPALPALARLIHSDDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDDMQTQCIINHQALPCLL+LL  NYKKSIKKEACWTISNITAGN  
Sbjct: 301 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLANNYKKSIKKEACWTISNITAGNKE 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
           QIQA+IEA IIGPLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDL
Sbjct: 361 QIQAVIEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGAHEQIKYLVSQGCIKPLCDL 420

Query: 420 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
           L CPDPRIVTVCLEGLENILK GEA+KN+  TGGVNL+AQ IDDAEGLEKIENLQSHDNT
Sbjct: 421 LICPDPRIVTVCLEGLENILKVGEADKNVSETGGVNLYAQMIDDAEGLEKIENLQSHDNT 480

Query: 480 EIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 528
           EIYEKAVKILETYW+EE EDE +PPGDA+Q+GF F G    VPSGGFNF
Sbjct: 481 EIYEKAVKILETYWLEE-EDETMPPGDASQSGFQFGGEAPAVPSGGFNF 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  927 bits (2397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/532 (85%), Positives = 490/532 (92%), Gaps = 6/532 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--- 57
           MSLRPNARTEVRR++YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREGLQA Q   
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFP 60

Query: 58  -PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
            PL  +A++  KKLESLPAMVAGVWSDD + QL+ATTQFRKLLSIERSPPI EVIQ+GVV
Sbjct: 61  TPL-QAASIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVV 119

Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
           PRF+EFL R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQ
Sbjct: 120 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 179

Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           AVWALGNVAGDSPKCRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F
Sbjct: 180 AVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
           EQ R ALPALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPS
Sbjct: 240 EQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPS 299

Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
           PSVLIPALRTVGNIVTGDDMQTQ IINH ALPCLL LLT N+KKSIKKEACWTISNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAG 359

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 416
           N +QIQA++EAG+I PLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPL
Sbjct: 360 NRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPL 419

Query: 417 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476
           CDLL CPDPRIVTVCLEGLENILK GEAEK+MGN+G VNL+AQ ID+AEGLEKIENLQSH
Sbjct: 420 CDLLVCPDPRIVTVCLEGLENILKVGEAEKSMGNSGDVNLYAQMIDEAEGLEKIENLQSH 479

Query: 477 DNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 528
           DN EIYEKAVKILETYW+ ED+DE LP GD  Q GF F  N +PVPSGGFNF
Sbjct: 480 DNNEIYEKAVKILETYWL-EDDDETLPTGDGAQPGFNFGNNDVPVPSGGFNF 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128392|ref|XP_002320318.1| predicted protein [Populus trichocarpa] gi|222861091|gb|EEE98633.1| predicted protein [Populus trichocarpa]

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/537 (84%), Positives = 491/537 (91%), Gaps = 9/537 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-- 58
           MSLRPNAR EVRR+KYKVAVDA+EGRRRREDN+VEIRKNKREESLLKKRREGLQA Q   
Sbjct: 1   MSLRPNARVEVRRNKYKVAVDADEGRRRREDNLVEIRKNKREESLLKKRREGLQAQQQQQ 60

Query: 59  ----LTNSAALD--NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
               +T+S  +   +K L++LPAM+AGVWSDD+NIQ + TT FRKLLSIERSPPINEVIQ
Sbjct: 61  QQQQVTSSLNISASDKPLDTLPAMIAGVWSDDKNIQFEGTTHFRKLLSIERSPPINEVIQ 120

Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
           SGVVPRFIEFL+RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA+PIFV+LLSSP +D
Sbjct: 121 SGVVPRFIEFLARDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAIPIFVKLLSSPAED 180

Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232
           VREQAVWALGNVAGDSPKCRDLVL +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP
Sbjct: 181 VREQAVWALGNVAGDSPKCRDLVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 240

Query: 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292
           QPLF+QT+PALPALERLIHSND+EVLTDACWALSYLSDG+N+KIQAVIEAGVCPRLVELL
Sbjct: 241 QPLFDQTKPALPALERLIHSNDNEVLTDACWALSYLSDGSNEKIQAVIEAGVCPRLVELL 300

Query: 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
           RH SP+VLIPALR VGNIVTGDDMQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISN
Sbjct: 301 RHQSPTVLIPALRAVGNIVTGDDMQTQCMINHQALPCLLNLLTNNYKKSIKKEACWTISN 360

Query: 353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC 412
           +TAGN NQIQA++EAGIIGPLV LL NAEFEIKKEAAWAISNATSGGS+EQIKFLV QGC
Sbjct: 361 VTAGNANQIQAVLEAGIIGPLVQLLQNAEFEIKKEAAWAISNATSGGSHEQIKFLVDQGC 420

Query: 413 IKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN 472
           IKPLCDLL CPDPRIVTVCLEGLENILK GEA+KN+GNTG  NL+ Q I+D EGLEKIEN
Sbjct: 421 IKPLCDLLICPDPRIVTVCLEGLENILKVGEAKKNLGNTGNANLYTQMIEDVEGLEKIEN 480

Query: 473 LQSHDNTEIYEKAVKILETYWVEEDED-EPLPPGDATQAGFGFAGNGLPVPSGGFNF 528
           LQSHDN EIYEKAVKILET+WVE+ +D E  PPGDA+Q+GF F G  +PV S GF F
Sbjct: 481 LQSHDNNEIYEKAVKILETFWVEDGDDFEAFPPGDASQSGFQFGGTEVPVSSNGFKF 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/532 (85%), Positives = 490/532 (92%), Gaps = 6/532 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--- 57
           MSLRPNARTEVRR++YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREGLQA Q   
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFP 60

Query: 58  -PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
            PL  S+ ++ KKLESLPAMVAGVWSDD + QL+ATTQFRKLLSIERSPPI EVIQ+GVV
Sbjct: 61  TPLQASSIVE-KKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVV 119

Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
           PRF+EFL R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQ
Sbjct: 120 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 179

Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           AVWALGNVAGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
           EQ R ALPALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPS
Sbjct: 240 EQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPS 299

Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
           PSVLIPALRTVGNIVTGDDMQTQ IINH ALPCLL LLT N+KKSIKKEACWTISNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAG 359

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 416
           N +QIQA+IEAG+I PLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPL
Sbjct: 360 NRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPL 419

Query: 417 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476
           CDLL CPDPRIVTVCLEGLENILK GEAEK++GNTG VNL+AQ ID+AEGLEKIENLQSH
Sbjct: 420 CDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDEAEGLEKIENLQSH 479

Query: 477 DNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 528
           DN EIYEKAVKILETYW+ ED+DE LP GD  Q GF F  N LPVPSGGFNF
Sbjct: 480 DNNEIYEKAVKILETYWL-EDDDETLPAGDGAQPGFNFGNNDLPVPSGGFNF 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa]

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/530 (84%), Positives = 492/530 (92%), Gaps = 2/530 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ-PL 59
           MSLRP+ARTEVRR++YKVAVDA+EGRRRREDNMVEIRKN+REESL KKRREGLQA   P 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQAQAIPA 60

Query: 60  TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
              ++   KKLE LP+MVAGVWS+D N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF
Sbjct: 61  ALHSSAAEKKLEHLPSMVAGVWSEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRF 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL SP+DDVREQAVW
Sbjct: 121 VQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSP+CRDLVL +GAL+PLLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F+Q 
Sbjct: 181 ALGNVAGDSPRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQV 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           +PALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL+ELL HPSPSV
Sbjct: 241 KPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDDMQTQCIINHQ+LPCLL+LLT NYKKSIKKEACWTISNITAGN  
Sbjct: 301 LIPALRTVGNIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNKE 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
           QIQA+IEA +IGPLV+LL NAEF+IKKE+AWAISNATSGG++EQIK+LVSQGCIKPLCDL
Sbjct: 361 QIQAVIEANLIGPLVHLLQNAEFDIKKESAWAISNATSGGTHEQIKYLVSQGCIKPLCDL 420

Query: 420 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
           L CPDPRIVTVCLEGLENILK GEA+KN+ +TGGVNL+AQ IDDAEGLEKIENLQSHDN+
Sbjct: 421 LICPDPRIVTVCLEGLENILKVGEADKNVSDTGGVNLYAQMIDDAEGLEKIENLQSHDNS 480

Query: 480 EIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 529
           EIYEKAVKILETYW+EED DE +PPGDA+Q+GF F G+   VPSGGFNFG
Sbjct: 481 EIYEKAVKILETYWLEED-DETMPPGDASQSGFQFGGDAPAVPSGGFNFG 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437493|ref|XP_002274422.1| PREDICTED: importin subunit alpha [Vitis vinifera] gi|147778789|emb|CAN75951.1| hypothetical protein VITISV_028605 [Vitis vinifera] gi|297743948|emb|CBI36918.3| unnamed protein product [Vitis vinifera]

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/531 (86%), Positives = 492/531 (92%), Gaps = 4/531 (0%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ARTEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREESL KKRREGLQA Q  T
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREESLQKKRREGLQAQQFTT 60

Query: 61  N-SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
             SA+   +KLESLPAMVAGVWS+D N+QL+ATT FRKLLSIERSPPINEVIQSGVVPR 
Sbjct: 61  PVSASTFERKLESLPAMVAGVWSEDSNLQLEATTYFRKLLSIERSPPINEVIQSGVVPRL 120

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           +EFL RDDFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S  DDVREQAVW
Sbjct: 121 VEFLGRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSQNDDVREQAVW 180

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL +GALMPL+AQFNEHAKLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 181 ALGNVAGDSPKCRDLVLGHGALMPLMAQFNEHAKLSMLRNATWTLSNFCRGKPQPQFEQT 240

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           +PALPALERLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 241 KPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 300

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD+QTQCIIN+ ALPCLL+LL+ NYKKSIKKEACWTISNITAGN +
Sbjct: 301 LIPALRTVGNIVTGDDIQTQCIINYGALPCLLNLLSHNYKKSIKKEACWTISNITAGNKD 360

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
           QIQ++IEAGII PL+ LL NAEFEIKKEAAWAISNATSGG+++QIK LVSQGCIKPLCDL
Sbjct: 361 QIQSVIEAGIIPPLIYLLQNAEFEIKKEAAWAISNATSGGTHDQIKLLVSQGCIKPLCDL 420

Query: 420 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
           L CPDPRIVTVCLEGLENILK GEA+K++G+T  VN FAQAIDDA+GLEKIENLQSHDNT
Sbjct: 421 LICPDPRIVTVCLEGLENILKVGEADKSLGHT-DVNQFAQAIDDADGLEKIENLQSHDNT 479

Query: 480 EIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGL-PVPSGGFNFG 529
           EIYEKAVKILETYW+EEDE EPLPPGDA+Q+ F F GN   PVP GGFNFG
Sbjct: 480 EIYEKAVKILETYWLEEDE-EPLPPGDASQSEFHFGGNDHPPVPPGGFNFG 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/532 (84%), Positives = 489/532 (91%), Gaps = 5/532 (0%)

Query: 1   MSLRP--NARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ- 57
           MS RP  N+RTEVRR++YKVAVDAEEGRRRRED MVEIRKN+REESL KKRREGLQ  Q 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQM 60

Query: 58  PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
           P +  ++L  KKLE LP+MV GVW+DD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVV 
Sbjct: 61  PASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVS 120

Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
           RF+EFL R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQA
Sbjct: 121 RFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180

Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237
           VWALGNVAGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 181 VWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFD 240

Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
           Q +PALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 241 QVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 300

Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
           SVLIPALRTVGNIVTGDDMQTQ IINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGN 360

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 417
             QIQA+IEA +I PLVNLL NAEF+IKKEAAWAISNATSGGS+EQIKFLVSQGCIKPLC
Sbjct: 361 KQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLC 420

Query: 418 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 477
           DLL CPDPRIVTVCLEGLENILK GEA+KN+GNTG VNL+AQ ID+AEGLEKIENLQSHD
Sbjct: 421 DLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSHD 480

Query: 478 NTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 528
           NTEIYEKAVKILETYW+EE EDE +PPGDA+Q+GF F  +  P VPSGGFNF
Sbjct: 481 NTEIYEKAVKILETYWLEE-EDETMPPGDASQSGFNFGSSDAPTVPSGGFNF 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/532 (84%), Positives = 490/532 (92%), Gaps = 7/532 (1%)

Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--- 57
           MSLRPNARTEVRR++YKVAVDA+EGRRRREDNMV IRK+KREESLLKKRREGLQAHQ   
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVXIRKSKREESLLKKRREGLQAHQQLP 60

Query: 58  -PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
            PL NS    +K LESLPAMVAGVWS+D ++QL+ATTQFRKLLSIERSPPI EVIQ+GVV
Sbjct: 61  APLQNSTV--DKNLESLPAMVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVV 118

Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
           PRF+EFL R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQ
Sbjct: 119 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 178

Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           AVWALGNVAGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F
Sbjct: 179 AVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 238

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
           EQ RPALPALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL++LL HPS
Sbjct: 239 EQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLMQLLMHPS 298

Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
           PSVLIPALRTVGNIVTGDDMQTQCIINH ALPCLL+LLT N+KKSIKKEACWTISNITAG
Sbjct: 299 PSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAG 358

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 416
           N  QIQ +IEAG++ PLVNLL +AEF+IKKEA+WAISNATSGG+++QIK+LVSQGC+KPL
Sbjct: 359 NKEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNATSGGTHDQIKYLVSQGCVKPL 418

Query: 417 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476
           CDLL CPDPRIVTVCLEGLENILK GEAEK++GNTG VN++AQ ID+AEGLEKIENLQSH
Sbjct: 419 CDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNVYAQMIDEAEGLEKIENLQSH 478

Query: 477 DNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 528
           DN EIYEK VKILETYW+EE EDE LP G+  Q GF F  N LPVPSGGFNF
Sbjct: 479 DNNEIYEKVVKILETYWLEE-EDETLPSGNGAQPGFNFGNNELPVPSGGFNF 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	529
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.996	0.990	0.776	6.9e-221
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.994	0.983	0.776	9.1e-219
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	1.0	0.981	0.716	3.1e-202
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.994	0.990	0.714	8.2e-202
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.996	0.979	0.710	6.8e-198
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.916	0.934	0.632	7.3e-162
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.896	0.897	0.626	5.2e-152
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.909	0.932	0.604	1.6e-150
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.979	0.936	0.568	6.6e-145
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.962	0.923	0.578	4.6e-144

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2133 (755.9 bits), Expect = 6.9e-221, P = 6.9e-221
 Identities = 413/532 (77%), Positives = 464/532 (87%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--P 58
             MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL+KKRREG+QA Q  P
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query:    59 LTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
               ++A++D KKL+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPR
Sbjct:    61 SASAASVD-KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query:   119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
             F+EFL ++D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAV
Sbjct:   120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query:   179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
             WALGNVAGDSP+CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct:   180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query:   239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
              +PALPALERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPS
Sbjct:   240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query:   299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
             VLIPALRTVGNIVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWTISNITAGN 
Sbjct:   300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query:   359 NXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418
             +            PLV+LL NAEF+IKKEAAWAISNATSGGS++QIK+LV QGCIKPLCD
Sbjct:   360 DQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCD 419

Query:   419 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 478
             LL CPDPRI+TVCLEGLENILK GEAEKN+G+TG +N +AQ IDDAEGLEKIENLQSHDN
Sbjct:   420 LLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDN 479

Query:   479 TEIYEKAVKILETYWVXXXXXXXXX--XXXATQAGFGFAGNGLPVPSGGFNF 528
              EIYEKAVKILETYW+               +QAGF F GN  PVPSGGFNF
Sbjct:   480 NEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF 531

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2113 (748.9 bits), Expect = 9.1e-219, P = 9.1e-219
 Identities = 416/536 (77%), Positives = 462/536 (86%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--- 57
             MSLRPNA+TEVRR++YKVAVDAEEGRRRREDNMVEIRK+KREESL KKRREGLQA+Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    58 ----PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS 113
                 P+  S+ ++ KKLESLPAMV GVWSDDR++QL+ATTQFRKLLSIERSPPI EVI +
Sbjct:    61 FAPSPVPASSTVE-KKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDA 119

Query:   114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDV 173
             GVVPRF+EFL+R+D+PQLQFEAAWALTNIASGTSENT+VVI+HGAVPIFV+LL+S +DDV
Sbjct:   120 GVVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDV 179

Query:   174 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233
             REQAVWALGNVAGDSP+CRDLVL  GAL+PLL+Q NEHAKLSMLRNATWTLSNFCRGKPQ
Sbjct:   180 REQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQ 239

Query:   234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293
             P F+Q RPALPALERLIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL+
Sbjct:   240 PPFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQ 299

Query:   294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
             H SPSVLIPALR++GNIVTGDD+QTQC+I+H AL  LL LLT N+KKSIKKEACWTISNI
Sbjct:   300 HQSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNI 359

Query:   354 TAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 413
             TAGN +            PLVNLL NAEF+IKKEAAWAISNATSGGS +QIK++V QG +
Sbjct:   360 TAGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVV 419

Query:   414 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 473
             KPLCDLL CPDPRI+TVCLEGLENILK GEAEK  GNTG VN +AQ IDDAEGLEKIENL
Sbjct:   420 KPLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQLIDDAEGLEKIENL 479

Query:   474 QSHDNTEIYEKAVKILETYWVXXXXXXXXXXXXATQAGFGFAG-NGLPVPSGGFNF 528
             QSHDN+EIYEKAVKILETYW+            + Q GF F G N   VP GGFNF
Sbjct:   480 QSHDNSEIYEKAVKILETYWLEEEDETLPPGDPSAQ-GFQFGGGNDAAVPPGGFNF 534

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1957 (694.0 bits), Expect = 3.1e-202, P = 3.1e-202
 Identities = 386/539 (71%), Positives = 447/539 (82%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ---AHQ 57
             MS +P+A+TEVRR++YKV+VDA+EGRRRREDNMVEIRKNKREE+L KKRREG     A Q
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    58 PLTN-SAALDNK-KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGV 115
             P  + S++L  + +LE++  M+AGV S+DR++QL+AT  FR+LLSIER+PPINEV+QSGV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
             VP  ++FLSRDDF QLQFEAAWALTNIASGTSENTRV+ID GAVP+FV+LLSS +++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
             QAVWALGNVAGDSPKCRD VLS  A+M LLAQF+EH+KLSMLRNATWTLSNFCRGKPQP 
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   236 FEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
             FEQ T+ ALPALERL+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354
             PSPSVLIPALRT+GNIVTGDD+QTQ +I+ QALP LL+LL   YKKSIKKEACWTISNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   355 AGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 414
             AGN +            PL+NLL   EFEIKKEA WAISNATSGG+++QIKFLVSQGCI+
Sbjct:   361 AGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIR 420

Query:   415 PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ 474
             PLCDLL CPDPR+VTV LEGLENILK GEAEKN+GNTG  NL+AQ I+DA+GL+KIENLQ
Sbjct:   421 PLCDLLPCPDPRVVTVTLEGLENILKVGEAEKNLGNTGNDNLYAQMIEDADGLDKIENLQ 480

Query:   475 SHDNTEIYEKAVKILETYWVXXXXXXXXXXXXATQ----AGFGFAGNGLPVPSGGFNFG 529
             SHDN EIYEKAVKILE+YW             A +    +GF F       P+GGFNFG
Sbjct:   481 SHDNNEIYEKAVKILESYWAADDEEEDIGGVDAPENVQSSGFQFGNQSGNAPTGGFNFG 539

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1953 (692.5 bits), Expect = 8.2e-202, P = 8.2e-202
 Identities = 380/532 (71%), Positives = 437/532 (82%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
             MSLRP+A+TEVRR++YKVAVDAEEGRRRREDN+VEIRKNKREE+L KKR     A    T
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    61 NSAALD----NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
                  D    N+  ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
             PR ++FLSRDDFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
             AVWALGNVAGDSPKCRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
             EQT+PALP LERL+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
             PSVLIPALRT+GNIVTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 416
             N +             LV +L +AEFE+KKEAAW ISNATSGG+++QIKF+VSQGCIKPL
Sbjct:   361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPL 420

Query:   417 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476
             CDLL CPD ++VTVCLE LENIL  GEAEKN+G+TG  NL+AQ ID+AEGLEKIENLQSH
Sbjct:   421 CDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSH 480

Query:   477 DNTEIYEKAVKILETYWVXXXXXXXXXXXXATQAGFGFAGNGLPVPSGGFNF 528
             DN +IY+KAVKILET+W             A Q+GF F      VP G FNF
Sbjct:   481 DNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1916 (679.5 bits), Expect = 6.8e-198, P = 6.8e-198
 Identities = 382/538 (71%), Positives = 431/538 (80%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
             MSLRP+ R E+R+  YK  VDA+E RRRREDN+VEIRKNKRE+SLLKKRREG+   Q L 
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    61 NSAALDN--------KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
               A LD         K+LE +P MV GV+SDD   QL+ATTQFRKLLSIERSPPI+EVI+
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
             +GV+PRF+EFL R D PQLQFEAAWALTN+ASGTS++TRVVI+ GAVPIFV+LL+S +DD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232
             VREQAVWALGNVAGDSP CR+LVL+ GAL PLLAQ NE++KLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292
                FEQ +PALP L +LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352
              H SP+VLIPALRTVGNIVTGDD QTQ II    LP L +LLTQN+KKSIKKEACWTISN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   353 ITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC 412
             ITAGN              PLV+LL NAEF+IKKEAAWAISNATSGGS+EQI++LV+QGC
Sbjct:   361 ITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGC 420

Query:   413 IKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN 472
             IKPLCDLL CPDPRIVTVCLEGLENILK GEA+K MG   GVNL+AQ I++++GL+K+EN
Sbjct:   421 IKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVEN 480

Query:   473 LQSHDNTEIYEKAVKILETYWVXXXXXXXXXXXXA--TQAGFGFAGNGLPVPSGGFNF 528
             LQSHDN EIYEKAVKILE YW                +Q  F F GN    P GGF F
Sbjct:   481 LQSHDNNEIYEKAVKILERYWAEEEEEQILQDGGNDNSQQAFNF-GNNPAAPVGGFKF 537

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1576 (559.8 bits), Expect = 7.3e-162, P = 7.3e-162
 Identities = 313/495 (63%), Positives = 384/495 (77%)

Query:     1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
             MSLRP+ +TE+RR +YKV+VDAEEGRRRRED +VEIRK+KR E+L+KKRR  ++   P  
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRR--VKVLPP-- 56

Query:    61 NSAALDNKKLESL---PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
             +   + N   ESL     M+ GV+SDD ++QL+ TT+FR +LS +RSPP + VI+SGVVP
Sbjct:    57 DYKLISNDPFESLLEIANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVP 116

Query:   118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
             RF+EFL +DD P+LQFEAAWALTNIASG SE+T+VVIDHG VP+FV+LL+SP DDVREQA
Sbjct:   117 RFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQA 176

Query:   178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237
             +W LGNVAGDS +CRD VL++GA +PLL Q N HA LS+LRNATWTLSNF RGKP P F+
Sbjct:   177 IWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFD 236

Query:   238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
               +  LP L+RL++S+D++VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL+H SP
Sbjct:   237 LVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASP 296

Query:   298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
              VL+PALR +GNIV+G+  QT C+IN   LP L DLLTQN+ + I++EACWTISNITAG 
Sbjct:   297 VVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGL 356

Query:   358 VNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 417
                            LVNL  +AEF+IKKEA WAISNA+ GGS  QIK+LV Q CIK LC
Sbjct:   357 EEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALC 416

Query:   418 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 477
             D+L CPD RI+ V L GLE IL AGE +KN+ +   VN ++Q I+DAEGLEKIENLQ H 
Sbjct:   417 DILVCPDLRIILVSLGGLEMILIAGEVDKNLRD---VNCYSQMIEDAEGLEKIENLQHHG 473

Query:   478 NTEIYEKAVKILETY 492
             N EIYEKAVKIL+TY
Sbjct:   474 NNEIYEKAVKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
 Identities = 308/492 (62%), Positives = 363/492 (73%)

Query:    11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKL 70
             VRRS YK  VD   GRRRRED+MVEIRK KREESLLKKRRE L  H P  +S  LD K  
Sbjct:     9 VRRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALP-HSPSADS--LDQK-- 63

Query:    71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFP 129
                  +++ +WSD+R++ ++ATTQ R LL  E  +  + EVIQ+G+VPRF+EFL+ DD P
Sbjct:    64 -----LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSP 118

Query:   130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189
             QLQFEAAWALTNIASGTSENT VVIDHGAV I VRLL+SP D VREQ VWALGN++GDSP
Sbjct:   119 QLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSP 178

Query:   190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249
             +CRD+VL + AL  LL Q N  AKLSML NA WTLSN CRGKPQP F+Q   ALPAL +L
Sbjct:   179 RCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQL 238

Query:   250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
             I  +D E+L   CWAL YLSDG+N+KIQAVIEA VC RL+ L  H SPSV+ PALRT+GN
Sbjct:   239 IRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGN 298

Query:   310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
             IVTG+D QTQ II+ QALPCL++LL  +Y K+I+KEACWT+SNITAG  +          
Sbjct:   299 IVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADI 358

Query:   370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
                LVNLL N+E ++KKEAAWAI NA +GGS +QI FLV Q CIKPLCDLL C D ++V 
Sbjct:   359 CPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVM 418

Query:   430 VCLEGLENILKAGEAEKNMGNTG-------GVNLFAQAIDDAEGLEKIENLQSHDNTEIY 482
             VCLE L+ ILK GE   +    G        VN  AQ I++AEGLEKIE LQSH+N +IY
Sbjct:   419 VCLEALKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIY 478

Query:   483 EKAVKILETYWV 494
             E AVKILETYW+
Sbjct:   479 ETAVKILETYWM 490

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1469 (522.2 bits), Expect = 1.6e-150, P = 1.6e-150
 Identities = 295/488 (60%), Positives = 375/488 (76%)

Query:     7 ARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALD 66
             ++ E R+S+YK ++D++E RR+RE+  + IRKNKREESLLKKR + +    P+   + + 
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLI- 62

Query:    67 NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 126
             N++LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL   
Sbjct:    63 NQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQ 122

Query:   127 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186
             DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+AG
Sbjct:   123 DFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAG 182

Query:   187 DSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244
             DS  CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +LP
Sbjct:   183 DSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLP 242

Query:   245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 304
              L +LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  PAL
Sbjct:   243 VLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPAL 302

Query:   305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXX 364
             RT+GNIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ N     
Sbjct:   303 RTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQV 361

Query:   365 XXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 424
                     LV LL NAEFEI+KEAAWAISNATS G+ +QI FLVSQGC+KPLCDLL   D
Sbjct:   362 IDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSD 421

Query:   425 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 484
             PRI+ V LEG+ENIL AG+ E  +    GVN + + I+DA+GL KI +LQ H N + +EK
Sbjct:   422 PRIINVALEGIENILVAGKKEAQVT---GVNPYKKIIEDADGLGKIYDLQHHMNKDTFEK 478

Query:   485 AVKILETY 492
               +I+ TY
Sbjct:   479 VSRIISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1416 (503.5 bits), Expect = 6.6e-145, P = 6.6e-145
 Identities = 306/538 (56%), Positives = 372/538 (69%)

Query:    10 EVRRSKYKVAVD--AEEGRRRREDNMVEIRKNKREESLLKKR----REG-------LQAH 56
             E RR++YK       +E RRRRE+  VEIRK KREE+L K+R    R+G       + A 
Sbjct:     8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67

Query:    57 QPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVV 116
             +    ++A++++    LP MV GV+SD    Q+ ATT+FRKLLS ER+PPI  VI++GVV
Sbjct:    68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127

Query:   117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
              RF+EFL R     +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV LLSSP  DVREQ
Sbjct:   128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186

Query:   177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235
             AVWALGN+AGDSP+CRD VL+ GAL PLL   N+  K+SMLRNATWTLSNFCRGK PQP 
Sbjct:   187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246

Query:   236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
             +    PALP L +LI+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RLVELL H 
Sbjct:   247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306

Query:   296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
             S SV  PALR+VGNIVTGDD+QTQ IIN  ALP LL LL+   K  I+KEACWTISNITA
Sbjct:   307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITA 365

Query:   356 GNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCI 413
             GN +            PLV+LL N +F+ +KEA WAISNATSGG    +QI++LV+QGCI
Sbjct:   366 GNSSQIQSVIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCI 425

Query:   414 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGG-VNLFAQAIDDAEGLEKIEN 472
             KPLCDLL CPD +I+ V L+GLENILK GE +K  G     VN +A  I++A G+EKI +
Sbjct:   426 KPLCDLLACPDNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHD 485

Query:   473 LQSHDNTEIYEKAVKILETYWVXXXXXXXXXXXXATQ-AGFGFAGNGLPVPSGGFNFG 529
              Q++ N EIY KA  I+E Y+             A Q    GF         GGF+FG
Sbjct:   486 CQNNANEEIYMKAYNIIEKYFSDEDEAAGDIDELAPQQTQTGFTLGATQQQPGGFSFG 543

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1408 (500.7 bits), Expect = 4.6e-144, P = 4.6e-144
 Identities = 309/534 (57%), Positives = 370/534 (69%)

Query:    10 EVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTN-SAALD 66
             E RR+++K       EE RRRRE+  VEIRK KREE+L K+R  G  A +P  +  AA D
Sbjct:     8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67

Query:    67 N--------KKL-ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
             +         +L E LP MV GV+S+  + Q+ ATT+FRKLLS ER+PPI EVI++GVV 
Sbjct:    68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127

Query:   118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
             RF+EFL R     +QFEAAWALTNIASG++  T+VVI+ GAVPIFV LL SP  DVREQA
Sbjct:   128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186

Query:   178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF 236
             VWALGN+AGDSP+CRD VLS GAL PLL    +  KLSMLRNATWTLSNFCRGK PQP +
Sbjct:   187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246

Query:   237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
                 PALP L +L++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RLVELL H S
Sbjct:   247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306

Query:   297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
              SV  PALR+VGNIVTGDD+QTQ IIN  ALPCLL LL  N K  I+KEACWTISNITAG
Sbjct:   307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAG 365

Query:   357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIK 414
             N              PL++LL N + + +KEA WAISNATSGG    +QI++LV+QGCIK
Sbjct:   366 NSAQIQSVVDANIIPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIK 425

Query:   415 PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG--GVNLFAQAIDDAEGLEKIEN 472
             PLCDLL+CPD +I+ V L+GLENILK G+ +K     G   +N +A  I++  G+EKI  
Sbjct:   426 PLCDLLSCPDNKIIQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHE 485

Query:   473 LQSHDNTEIYEKAVKILETYWVXXXXXXXXXXXXATQAG-FGFAGNGLPVPSGG 525
              Q++ N EIY KA  I+E Y+                 G FGF GN    PSGG
Sbjct:   486 CQTNANEEIYMKAFNIIEKYFSDDDENADDAAPAQGPNGTFGF-GN----PSGG 534

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5702	0.9054	0.8936	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4421	0.9451	0.9727	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5682	0.9054	0.8936	yes	no
O04294	IMA2_ARATH	No assigned EC number	0.7368	0.9943	0.9905	no	no
Q02821	IMA1_YEAST	No assigned EC number	0.5271	0.9659	0.9428	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.8041	0.9981	0.9924	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5283	0.9659	0.9480	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.6086	0.9451	0.9689	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.8169	0.9905	0.9943	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5682	0.9054	0.8936	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5702	0.9054	0.8936	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.848	0.9413	0.9467	yes	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.7873	0.9962	0.9868	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIII0659 hypothetical protein (529 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	529
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.0
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-33
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-32
pfam01749	97	pfam01749, IBB, Importin beta binding domain	7e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-21
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-10
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-09
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	3e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-06
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	9e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-05
pfam04826	254	pfam04826, Arm_2, Armadillo-like	1e-04
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	3e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.001
COG5116	926	COG5116, RPN2, 26S proteasome regulatory complex c	0.001
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.002
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.002
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.003
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.004
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.004

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  602 bits (1553), Expect = 0.0
 Identities = 282/524 (53%), Positives = 355/524 (67%), Gaps = 11/524 (2%)

Query: 10  EVRRSKY--KVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDN 67
           E RR  +  K    A+E RRRRE+  VE+RK KREE L K+R     + +  ++   ++ 
Sbjct: 8   EARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQ 67

Query: 68  KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD 127
           +    LP +   ++SDD   QL A  +FRKLLS E SPPI  VI +GVVPRF+EF+    
Sbjct: 68  QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ 127

Query: 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
              LQFEAAWALTNIASGT++ T+VV+D GAVP+F++LLSS  DDVREQAVWALGN+AGD
Sbjct: 128 RDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187

Query: 188 SPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPA 245
           S  CRD VL  GAL PLL      A  +SMLRNATWTLSN CRGK P P +     ALP 
Sbjct: 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPI 247

Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
           L +LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RLVELL H S  +  PALR
Sbjct: 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307

Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365
           +VGNIVTG D QTQ IIN  AL     LL+ + K++I+KEACWTISNITAGN  QIQA+I
Sbjct: 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAVI 366

Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCP 423
           +A +I PL++LL +AE++IKKEA WAISNATSGG N  + I++LVSQG IKPLCDLL+  
Sbjct: 367 DANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV 426

Query: 424 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE 483
           D +I+ V L+ +ENILK GE ++       +N++A  ++ A G++ I  LQ   N  IY+
Sbjct: 427 DNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYD 485

Query: 484 KAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFN 527
           KA  I+E ++ EED  + L P  A    F F  N      G FN
Sbjct: 486 KAYSIIEKFFGEEDAVDELAPETAGNT-FTFGSN--VNQQGNFN 526

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  121 bits (305), Expect = 8e-33
 Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 2/121 (1%)

Query: 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
            VIQ+G +P  +  LS  D   +Q EAAWAL+N+++G ++N + V++ G +P  V+LL S
Sbjct: 2   AVIQAGGLPALVSLLSSSDEN-VQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
             ++V + A+WAL N+A      + +VL  G + P L    + +   + +NAT  LSN  
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 229 R 229
            
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  118 bits (298), Expect = 8e-32
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
            LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P LV+LL+     V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
            AL  + N+  G +     ++    +P L++LL  +  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  114 bits (288), Expect = 7e-31
 Identities = 42/97 (43%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 4  RPNARTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT-- 60
              + E RR  YK    DAEE RRRRE+  VE+RKNKREE LLK+R  GL         
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60

Query: 61 ---NSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQ 94
             + ++  ++    LP MV GV SDD   QL AT  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 93.9 bits (234), Expect = 5e-23
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421
           +A+I+AG +  LV+LL +++  +++EAAWA+SN ++G +N+ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 422 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 481
             D  +V   L  L N+              G       + +A G+ K+ NL    N +I
Sbjct: 60  SEDEEVVKAALWALRNL------------AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDI 107

Query: 482 YEKAVKILETYW 493
            + A   L    
Sbjct: 108 QKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 89.7 bits (223), Expect = 2e-21
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA 380
           +I    LP L+ LL+ +  +++++EA W +SN++AGN + IQA++EAG +  LV LL + 
Sbjct: 3   VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 381 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438
           + E+ K A WA+ N  +G  +     ++  G +  L +LL+  +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPED-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.1 bits (219), Expect = 5e-21
 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 2/113 (1%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LPA+V+ + S D N+Q +A      L S   +  I  V+++G +P  ++ L  +D  ++ 
Sbjct: 9   LPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVV 66

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185
             A WAL N+A+G  +N  +V++ G VP  V LL S  +D+++ A  AL N+A
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.0 bits (131), Expect = 6e-10
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185
           + EN + VI+ GAVP  V+LLSSP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185
             EN + V+D G +P  V LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397
           +    QA+IEAG + PLV LL + + E+++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184
            +++  AA AL  +A G  E  R  +    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
           + +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
            ++  QAV++AG  P LVELL+     V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 103 RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144
                  V+ +G +P  +E L  +D  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 104 SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144
                 VI++G VP  ++ LS  D  ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.1 bits (108), Expect = 8e-07
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397
             QA+++AG +  LV LL + + E+ KEAAWA+SN +S
Sbjct: 4   NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
                Q +I   A+P L+ LL+    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438
            +E  + +V  G +  L +LL   D  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438
           S E  + ++  G + PL  LL+ PD  +       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
           DD   Q +++   LP L++LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +   +E L  D  P+++  AA AL  +            D  A+P  + LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 176 QAVWALGNVAGDS 188
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSD 270
           A+P L +L+ S D+EV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSD 270
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|218281 pfam04826, Arm_2, Armadillo-like

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379
            ++    L  LL LL       I + A  T+ N  A + NQ   I + G I  + NLL N
Sbjct: 7   DVLEPHDLQKLLALLESTEDPFIHEIALITLGNSAAYSFNQ-DIIRDLGGIPIIANLLSN 65

Query: 380 AEFEIKKEAAWAISNATSGGSN-EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 435
              EIK++A  A++N +    N ++IK  V+Q C   +   LN        V L GL
Sbjct: 66  PNPEIKEKALNALNNLSVNVENQKKIKVYVNQVCEDIVSSPLNSA------VQLAGL 116

This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors. Length = 254

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 64/309 (20%), Positives = 108/309 (34%), Gaps = 50/309 (16%)

Query: 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLV--LSNGALMPLLAQFN 209
           ++    VP    LLS     V   AV  L  +   D      L+  L    L  LL   N
Sbjct: 147 LVRDFLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVR-RLCNLLTVCN 205

Query: 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269
              ++ +LR     L+ +    P+      +  L  +  L+ ++++ VL +A   + +L 
Sbjct: 206 PWLQVKILR----LLTRYAPQDPRE----PKELLEDILNLLQNSNNAVLYEAVKTIIHL- 256

Query: 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-------DMQTQCII 322
           D   + I   + A     L  LL  P  ++   ALR +  I+          D+   C+ 
Sbjct: 257 DPEPELIVLAVNA-----LGRLLSSPDENLRYVALRNLNKILEKHPPAVQHLDLIIFCLK 311

Query: 323 NHQ-------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ--IQAIIEAGI---- 369
                     AL  L  L+ ++  K I KE    +S I         ++AI         
Sbjct: 312 TDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPT 371

Query: 370 -----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-NCP 423
                I  L+ LL  A   +  E    I +        + ++++       LC+LL +  
Sbjct: 372 DAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYPELR-EYILEH-----LCELLEDIE 425

Query: 424 DPRIVTVCL 432
            P      L
Sbjct: 426 SPEARAAAL 434

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229
           SP+ +  V+  GA+ P L Q        +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAV-PPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227
           VRE A  ALG +AG  P    L  +   L+P L    +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGP--ELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 21/158 (13%)

Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
           +I  L  D    L++   ++L     GT  N  VV     +   V   S   DDVR  AV
Sbjct: 520 YINELLYDKDSILRYNGVFSLALAYVGTG-NLGVVST--LLHYAV---SDGNDDVRRAAV 573

Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
            ALG V      C D  L  G +  L    N H +          L   C G        
Sbjct: 574 IALGFVC-----CDDRDLLVGTVELLSESHNFHVRAG----VAVALGIACAGT------G 618

Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 276
            + A   LE L++  +D V   A  A+  +    N ++
Sbjct: 619 DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656

Length = 926

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268
             A   L     G P+ L       LPAL  L+  +DDEV   A WAL  +
Sbjct: 5   EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303
             LE L+   D EV   A  AL  L D               P L+ELL+ P P V   A
Sbjct: 3   ALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRRAA 51

Query: 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351
              +G +  GD          +ALP LL+LL  +    ++  A   ++
Sbjct: 52  AEALGKL--GDP---------EALPALLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 53/219 (24%), Positives = 74/219 (33%), Gaps = 45/219 (20%)

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
                ++ L  +D   ++  AA AL  + S             AVP+   LLS     VR
Sbjct: 44  AADELLKLLEDEDLL-VRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVR 91

Query: 175 EQAVWALGNVAGDSPKCRDLV--LSN--------------------GALMPLLAQFNEHA 212
           + A  ALG + GD      LV  L N                     AL PLL    +  
Sbjct: 92  DAAADALGEL-GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDED 150

Query: 213 KLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271
             S        L +      + L E     A+P L  L+   D +V      A S L   
Sbjct: 151 SGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVR---RAAASALGQL 207

Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310
            ++ ++A         LV+ L   S  V   AL  +G I
Sbjct: 208 GSENVEAA------DLLVKALSDESLEVRKAALLALGEI 240

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD-V 173
            +P  +E L +D  P+++  AA AL  +            D  A+P  + LL    D  V
Sbjct: 32  ALPALLELL-KDPDPEVRRAAAEALGKLG-----------DPEALPALLELLQDDDDAVV 79

Query: 174 REQAVWALG 182
           R  A  AL 
Sbjct: 80  RAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVA 185
           +P+ + LL+ P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	529
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.88
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.82
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.79
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.79
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.79
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.75
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.75
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.73
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.73
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.71
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.7
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.69
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.68
PRK09687	280	putative lyase; Provisional	99.68
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.66
PRK09687	280	putative lyase; Provisional	99.64
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.64
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.61
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.6
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.59
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.59
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.55
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.54
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.51
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.5
PTZ00429	746	beta-adaptin; Provisional	99.5
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.49
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.49
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.47
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.45
PTZ00429	746	beta-adaptin; Provisional	99.41
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.4
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.38
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.34
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.3
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.26
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.22
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.19
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.16
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.15
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.11
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.08
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.06
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.04
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.02
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.0
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.0
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.99
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.99
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.96
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.92
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.92
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.9
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.9
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.88
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.86
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.8
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.77
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.76
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.76
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.71
COG5369	743	Uncharacterized conserved protein [Function unknow	98.69
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.68
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.67
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.67
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.65
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.65
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.64
COG5369	743	Uncharacterized conserved protein [Function unknow	98.58
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.57
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.55
TIGR02270	410	conserved hypothetical protein. Members are found	98.54
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.54
TIGR02270	410	conserved hypothetical protein. Members are found	98.51
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.51
PF05536	543	Neurochondrin: Neurochondrin	98.49
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.49
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.47
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.46
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.46
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.44
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.43
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.38
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.38
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.38
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.38
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.37
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.34
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.32
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.27
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.25
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.23
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.21
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.2
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.19
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.19
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.19
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.09
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.08
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.08
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.07
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.06
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.02
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.02
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.01
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.0
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.0
PF05536	543	Neurochondrin: Neurochondrin	97.99
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.98
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.98
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.95
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.93
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.87
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.85
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.84
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.78
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.75
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.72
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.72
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.71
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.68
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.66
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.66
KOG0567	289	consensus HEAT repeat-containing protein [General	97.62
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.61
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.61
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.6
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.54
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.53
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.5
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.49
KOG0567	289	consensus HEAT repeat-containing protein [General	97.47
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.45
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.4
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.39
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.38
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.35
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.34
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.3
PRK14707	2710	hypothetical protein; Provisional	97.29
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.26
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.25
PF05004	309	IFRD: Interferon-related developmental regulator (	97.24
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.22
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.19
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.16
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.15
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.13
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.12
PF05004	309	IFRD: Interferon-related developmental regulator (	97.07
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.04
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.04
PRK14707	2710	hypothetical protein; Provisional	97.03
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.03
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.02
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.88
KOG1243	690	consensus Protein kinase [General function predict	96.88
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.75
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.75
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.75
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.75
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.73
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.73
KOG2956	516	consensus CLIP-associating protein [General functi	96.71
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.7
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.7
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.67
KOG2025	892	consensus Chromosome condensation complex Condensi	96.65
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.65
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.63
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.62
KOG2956	516	consensus CLIP-associating protein [General functi	96.56
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.49
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.38
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.34
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.28
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.27
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.26
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.24
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.2
KOG3036	293	consensus Protein involved in cell differentiation	96.04
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.03
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.99
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.94
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.92
KOG3036	293	consensus Protein involved in cell differentiation	95.92
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.86
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.77
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.76
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.71
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.62
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.62
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.59
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.56
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.49
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.49
KOG1243	690	consensus Protein kinase [General function predict	95.49
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.41
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.32
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.28
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.25
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.18
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.17
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.17
KOG2025	892	consensus Chromosome condensation complex Condensi	95.14
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.05
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	95.0
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.96
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.94
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.84
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.84
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	94.66
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.53
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.38
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.37
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	94.36
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.27
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.2
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	94.16
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.05
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.04
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	93.98
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.8
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.73
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.54
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.48
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	93.47
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.45
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.34
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.33
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	93.3
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.27
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	93.21
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.19
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	93.04
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.98
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	92.92
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.81
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.62
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.47
KOG0413	1529	consensus Uncharacterized conserved protein relate	92.43
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.19
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.14
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.11
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.04
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	91.99
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.85
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.71
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.36
KOG0413	1529	consensus Uncharacterized conserved protein relate	91.34
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	91.32
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.32
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.26
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.61
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	90.5
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	90.11
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	90.1
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	89.83
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	89.47
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.42
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.4
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	89.35
KOG2005	878	consensus 26S proteasome regulatory complex, subun	89.26
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	88.74
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	88.51
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	88.4
cd03561	133	VHS VHS domain family; The VHS domain is present i	88.18
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	87.92
KOG1410	1082	consensus Nuclear transport receptor RanBP16 (impo	87.79
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	87.65
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.23
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	87.15
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	87.02
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	86.44
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	86.42
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	86.21
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.04
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	85.87
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	85.81
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	85.68
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	85.55
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	85.34
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	85.26
cd03561	133	VHS VHS domain family; The VHS domain is present i	85.18
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	84.69
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.36
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	84.22
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	84.01
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	83.8
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	83.51
KOG1410	1082	consensus Nuclear transport receptor RanBP16 (impo	83.12
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	82.81
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	82.53
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	82.44
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	82.23
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	81.25
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	80.05

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.4e-88  Score=598.92  Aligned_cols=515  Identities=54%  Similarity=0.833  Sum_probs=464.4

Q ss_pred             CCccHHHhhhccC--CCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCCCccchhhhhhhhhccHHHHHHhhcCC
Q 009665            6 NARTEVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSD   83 (529)
Q Consensus         6 ~~~~~~~~~~~k~--~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~   83 (529)
                      .+.++.|+.+||+  ++.++|+||+|+++++|+||+||+|.+.|||+.....+...+....-.++....+|.+.+.|.|+
T Consensus         4 rf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt~~l~Sd   83 (526)
T COG5064           4 RFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSD   83 (526)
T ss_pred             ccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHHHHHhhh
Confidence            4578899999998  47799999999999999999999999999998732222211111111122234689999999999


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009665           84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV  163 (529)
Q Consensus        84 ~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  163 (529)
                      |.+.|++|...+++++|.+.+||++.+++.|++|.+++++......-++++|+|+|+|+++++..++..++++|++|.++
T Consensus        84 Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi  163 (526)
T COG5064          84 DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI  163 (526)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence            99999999999999999999999999999999999999995544367899999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCC-CCCchhhhhc
Q 009665          164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGK-PQPLFEQTRP  241 (529)
Q Consensus       164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~  241 (529)
                      ++|.+++.+++++++|+|||++++++.+|+.+++.|++.+++.++..+ .+..+.+++.|+|+|||+++ |++....+..
T Consensus       164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq  243 (526)
T COG5064         164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ  243 (526)
T ss_pred             HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence            999999999999999999999999999999999999999999999543 36799999999999999998 8888888999


Q ss_pred             hHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHH
Q 009665          242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI  321 (529)
Q Consensus       242 ~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~  321 (529)
                      .+|.|.+++.+.|+++..+|||++++|++.+.+.++.+++.|+.++|+++|.+++..++.+|++.+||++++++.+++.+
T Consensus       244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqvi  323 (526)
T COG5064         244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVI  323 (526)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC--
Q 009665          322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--  399 (529)
Q Consensus       322 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~--  399 (529)
                      ++.|+++.+..+|.++ ...+|++|||+++|+++|+.++++.+++.+++|.|+++|...+..++++||||+.|.++++  
T Consensus       324 I~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~  402 (526)
T COG5064         324 INCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN  402 (526)
T ss_pred             eecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence            9999999999999999 8899999999999999999999999999999999999999999999999999999999876  


Q ss_pred             CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCH
Q 009665          400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT  479 (529)
Q Consensus       400 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~  479 (529)
                      -|+.++||++.|++++|+++|...+.++...+++++.++++.++..... +....|.|..++++.||++.|..+|.+.|.
T Consensus       403 ~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~  481 (526)
T COG5064         403 RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGGMDAIHGLQDSVNR  481 (526)
T ss_pred             CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhcccHHHHHHhhhcccc
Confidence            4799999999999999999999999999999999999999999876643 334568899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCC-CCCCCCCCCccccCCCCCCCCCCCCcC
Q 009665          480 EIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFAGNGLPVPSGGFNF  528 (529)
Q Consensus       480 ~v~~~a~~il~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (529)
                      ++|.+|..||++||++||..|+ .|.+.  +..|+|...    ++.+|||
T Consensus       482 ~iy~KAYsIIe~fFgeeD~vd~lapet~--g~tftfg~~----~~~qg~f  525 (526)
T COG5064         482 TIYDKAYSIIEKFFGEEDAVDELAPETA--GNTFTFGSN----VNQQGNF  525 (526)
T ss_pred             HHHHHHHHHHHHHcccchhhhhcCcccc--CCeeecCCC----ccccCCC
Confidence            9999999999999998876665 45543  348888765    3345555

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-86  Score=631.98  Aligned_cols=507  Identities=66%  Similarity=1.021  Sum_probs=461.8

Q ss_pred             cHHHhhhccC-CCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCCCccchhhhhhhhhccHHHHHHhhcCCCHHH
Q 009665            9 TEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNI   87 (529)
Q Consensus         9 ~~~~~~~~k~-~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~~~   87 (529)
                      ...|+++||+ +++++|+||||++..+|+||+||++.+.|||+........+  ............+.++..+.|+++..
T Consensus         5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~   82 (514)
T KOG0166|consen    5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDE--LLSDSQSQASNLELMLAALYSDDPQQ   82 (514)
T ss_pred             hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccccc--ccchhHHHhhhhHHHHHHHhCCCHHH
Confidence            3456667776 69999999999999999999999999999999322111111  01111122234788999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC
Q 009665           88 QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS  167 (529)
Q Consensus        88 ~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~  167 (529)
                      +..+...++++++.+.++++..++..|++|.|+++|...+++.++++|+|+|+||++++++.+..++++|++|.|+.++.
T Consensus        83 q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~  162 (514)
T KOG0166|consen   83 QLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS  162 (514)
T ss_pred             HHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc
Confidence            99999999999999989999999999999999999987766999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHH
Q 009665          168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL  246 (529)
Q Consensus       168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L  246 (529)
                      +++..++++|+|+|+|++++++.+|+.++..|++.+|+.++..+....+.+++.|+|+|||+++ |.+.+..+..++|.|
T Consensus       163 s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L  242 (514)
T KOG0166|consen  163 SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL  242 (514)
T ss_pred             CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999966666789999999999999999 889999999999999


Q ss_pred             HHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCC
Q 009665          247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA  326 (529)
Q Consensus       247 ~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  326 (529)
                      ..++.+.|++|..++||+|+||++++++.++.+++.|+++.|+.+|.+.++.++.+|++++||+++|++.+++.+++.|+
T Consensus       243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~  322 (514)
T KOG0166|consen  243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA  322 (514)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 009665          327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  406 (529)
Q Consensus       327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  406 (529)
                      ++.|..++...+...++++|||+|+||++|++++++.+++.|++|.|+++|+.++.++|++|+||++|++.+++++++.|
T Consensus       323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y  402 (514)
T KOG0166|consen  323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKY  402 (514)
T ss_pred             HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence            99999999855477799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHH
Q 009665          407 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV  486 (529)
Q Consensus       407 l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~  486 (529)
                      |++.|++++|+++|...|++++.+++.+|++|++.++.....   .+ |++..+|+++||+++++.||.|+|.++|++|.
T Consensus       403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~---~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~  478 (514)
T KOG0166|consen  403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR---GT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAY  478 (514)
T ss_pred             HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc---cc-cHHHHHHHHccChhHHHHhhccccHHHHHHHH
Confidence            999999999999999999999999999999999999987642   12 88999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCCCC-CCCCCCCCccccCCCCCCCCCCCCcC
Q 009665          487 KILETYWVEEDEDEPL-PPGDATQAGFGFAGNGLPVPSGGFNF  528 (529)
Q Consensus       487 ~il~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (529)
                      .||++||+.|+++++. |++    .+|+|..+   .|+++|||
T Consensus       479 ~II~~yf~~e~~~~~~~~~~----~~~~~~~~---~~~~~f~f  514 (514)
T KOG0166|consen  479 KIIDTYFSEEDDEDDQQPTT----SQFTFQVQ---APDGGFNF  514 (514)
T ss_pred             HHHHHhcCCCcccccccccc----cccccCCC---CCCCCCCC
Confidence            9999999998655433 322    17777755   48899999

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-42  Score=332.87  Aligned_cols=368  Identities=27%  Similarity=0.427  Sum_probs=330.1

Q ss_pred             ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        71 ~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      |.+|.++..|. ..++.+|++|+++|.+++++. ....+.+++.|.+|.|+.++.+++ .+++++|+|+|+|++.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            88999999997 556999999999999999986 677888999999999999999999 999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          150 TRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      |+.+++.|+++.|+.++...+. .+..++.|+|.|+|.........-.-..+++.|..++ ++.|+.+...+||++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988654 7889999999999976521222223335788899999 8899999999999999999


Q ss_pred             cCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHH
Q 009665          229 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRT  306 (529)
Q Consensus       229 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~  306 (529)
                      .+. +........+++|.|+.+|.+.++.++..++++++|++.+++...+.+++.|+++.|..++. ++...++..|+|+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            887 44555667899999999999999999999999999999999999999999999999999998 5667799999999


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHH
Q 009665          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (529)
Q Consensus       307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~  385 (529)
                      |+||+.|+..+.+.+++.|++|.|+.+|++. +.++|++|+|+|+|++. ++++++.++++.|+++.++++|...|.++.
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii  424 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII  424 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence            9999999999999999999999999999999 89999999999999998 689999999999999999999988899999


Q ss_pred             HHHHHHHHHHhcCCC-------HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          386 KEAAWAISNATSGGS-------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       386 ~~a~~aL~nl~~~~~-------~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      ..++.+|.|+...+.       .....++-+.|+++.+-.|-.+++.++-..+...+.+.+..+
T Consensus       425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            999999999986542       234556778899999999988899899999998888887554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.1e-42  Score=306.24  Aligned_cols=366  Identities=25%  Similarity=0.354  Sum_probs=319.7

Q ss_pred             hccHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           70 LESLPAMVAGV-WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        70 ~~~l~~l~~~L-~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      -|.+|++++.+ ..+....+++|+++|.+++|+. ....+.+++.|.+|.++++|.+++ .+++.+++|+|+|++.+++.
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence            47899999999 4667779999999999999986 566778899999999999999998 89999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665          149 NTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  226 (529)
                      +++.+++.|++..++.++.+  .+..+...+.|+|+|+|+....-.+.-.-...++.|.+++ ...|+++...|||++++
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSY  269 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISY  269 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence            99999999999999999877  4468899999999999954311111111123678888888 88899999999999999


Q ss_pred             hhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHH
Q 009665          227 FCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  305 (529)
Q Consensus       227 l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~  305 (529)
                      |+.+. .........++.+.|+.+|.+++..++..+++.++|+..+++...+.+++.|+++.+..+|+++...++..|||
T Consensus       270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW  349 (526)
T COG5064         270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW  349 (526)
T ss_pred             hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence            99986 33344455788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHhcCCh
Q 009665          306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEF  382 (529)
Q Consensus       306 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~l~~L~~~l~~~~~  382 (529)
                      +++|+..++.++.+.+++.+++|.|+.+|.+. +-.++++|||+++|.+.+   -|+.+.++++.|++..|+++|.-.+.
T Consensus       350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN  428 (526)
T COG5064         350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN  428 (526)
T ss_pred             eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence            99999999999999999999999999999998 999999999999999984   68999999999999999999999888


Q ss_pred             hHHHHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          383 EIKKEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       383 ~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      ++-+.++.++.|+...+..          ....++-+.|+++.+..+-.+.+..+-..+-..+..++
T Consensus       429 kiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF  495 (526)
T COG5064         429 KIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF  495 (526)
T ss_pred             cchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence            8999999999999876632          23344445899999999988888888777776666555

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=5.1e-40  Score=359.23  Aligned_cols=408  Identities=21%  Similarity=0.252  Sum_probs=344.0

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      +-|.+|.++..|.++++..|..|+..+..++... ..+...+++.|++|.|+++|.+++++.+|++|+|+|++|+.++++
T Consensus       187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e  265 (2102)
T PLN03200        187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE  265 (2102)
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH
Confidence            4479999999999999999999999998877653 457888999999999999998765479999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------hHH---HHHhcCChHHHH
Q 009665          149 NTRVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRD---LVLSNGALMPLL  205 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~---~~~~~~~i~~l~  205 (529)
                      .+..+++.|++|.|+.++.+++         ..++++|+|+|+|||++.+.           .|+   .....|++.+++
T Consensus       266 ~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll  345 (2102)
T PLN03200        266 AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYAL  345 (2102)
T ss_pred             HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHH
Confidence            9999999999999999998655         34699999999999987543           111   123457777787


Q ss_pred             HHhccchhHHHH----HHHHHHHhhhhcCC-CCCchh-------------------hhhchHHHHHHhhccCChHHHHHH
Q 009665          206 AQFNEHAKLSML----RNATWTLSNFCRGK-PQPLFE-------------------QTRPALPALERLIHSNDDEVLTDA  261 (529)
Q Consensus       206 ~~l~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~-------------------~~~~~l~~L~~ll~~~d~~v~~~a  261 (529)
                      ..+. ..+....    ..++|+|.+|++++ +.....                   ...++++.|+.++...+.+++.++
T Consensus       346 ~l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~A  424 (2102)
T PLN03200        346 MVFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEEL  424 (2102)
T ss_pred             HhcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHH
Confidence            7773 3333332    35789999999987 333121                   113566788899998999999999


Q ss_pred             HHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchh
Q 009665          262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  341 (529)
Q Consensus       262 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  341 (529)
                      +|+|.+++.+..+..+.+.+.|+++.|+.+|.+++..++..|+++|++++.+++.++..+++.|++|.|+.+|.++ +.+
T Consensus       425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~  503 (2102)
T PLN03200        425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQK  503 (2102)
T ss_pred             HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHH
Confidence            9999999999888999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009665          342 IKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  420 (529)
Q Consensus       342 v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  420 (529)
                      ++++|+|+|+|++.+ +++++.++ +.|+++.|+++|.++++++++.|+|+|.+++..++.+.         ++.|+.+|
T Consensus       504 iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LL  573 (2102)
T PLN03200        504 AKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALL  573 (2102)
T ss_pred             HHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHh
Confidence            999999999999997 44455555 78999999999999999999999999999998776554         36678889


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCC
Q 009665          421 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  498 (529)
Q Consensus       421 ~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~  498 (529)
                      ..+++.++..++.+|.+++...+....         ........||++.|.+|+.++++++|+.|.++|.+||.+..+
T Consensus       574 lsdd~~~~~~aL~vLgnIlsl~~~~d~---------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        574 LGDLPESKVHVLDVLGHVLSVASLEDL---------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             cCCChhHHHHHHHHHHHHHhhcchhHH---------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            999999999999999999886653221         122334579999999999999999999999999999986543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=6.1e-38  Score=343.05  Aligned_cols=416  Identities=19%  Similarity=0.202  Sum_probs=368.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      +.++.|+..|...+.+.|..++++|..++..+ ....+.+++.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            56788999999999999999999999987654 566888899999999999999988 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ..+++.|++|.|+++|.+++..+++.|+|+|+|++.+++..+..+...|++++|+.+| .+.+...+..++|+|.+++..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888888899999999999 666889999999999999753


Q ss_pred             CCCCc-----------------------------------h---hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665          231 KPQPL-----------------------------------F---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (529)
Q Consensus       231 ~~~~~-----------------------------------~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~  272 (529)
                      .....                                   .   ....++++.|+.++.++++.++..++|+|.+++.+.
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            21100                                   0   012468999999999999999999999999999988


Q ss_pred             chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                      .+..+.++..|++++++.+|.+.+..++..++++|++++.+.. .+...+++.|+++.|+.+|.+. +.+++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999997443 4456678999999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHH--HHHHHHcCChHHHHhccCCCCHHHHH
Q 009665          352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLCDLLNCPDPRIVT  429 (529)
Q Consensus       352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~--~~~l~~~~~l~~L~~lL~~~~~~v~~  429 (529)
                      |++.. ++....+...|+++.|+++|.+++++.|+.|+|+|.+++.+.+.++  ..++...|.+.+|+++|+..|.+...
T Consensus       720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~  798 (2102)
T PLN03200        720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA  798 (2102)
T ss_pred             HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence            99997 5667778889999999999999999999999999999999876554  36777889999999999999988776


Q ss_pred             H--HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009665          430 V--CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  496 (529)
Q Consensus       430 ~--~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~  496 (529)
                      .  ++++|..+.+..+...     ...++|..+++..++++.|.....|.+|.++++|..+|+++..+.
T Consensus       799 ~~~al~~l~~l~~~~~~~~-----~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        799 TSEALEALALLARTKGGAN-----FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             HHHHHHHHHHHHhhcccCC-----CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            6  8999999988654433     245789999999999999977779999999999999999998754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3e-29  Score=224.76  Aligned_cols=364  Identities=21%  Similarity=0.271  Sum_probs=319.1

Q ss_pred             hhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009665           68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  147 (529)
Q Consensus        68 ~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~  147 (529)
                      .++.++..++..+.++..++|..++.++.+++..  +.....+...|.+..+.++-++.+ ..+|..+..+|.+++. +.
T Consensus       123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~  198 (550)
T KOG4224|consen  123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR  198 (550)
T ss_pred             EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence            4567888899888888999999999999999876  344556778999999999888888 8999999999999998 78


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhccchhHHHHHHHHHHHh
Q 009665          148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLS  225 (529)
Q Consensus       148 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~  225 (529)
                      ++++.++.+|++|.|+.++.+.+..++..|+.+++||+.+.. .|+.+.+.+  .++.|+.++ .++++.++..+..+|.
T Consensus       199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr  276 (550)
T KOG4224|consen  199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR  276 (550)
T ss_pred             hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998765 588888888  899999999 8889999999999999


Q ss_pred             hhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC-cchHHHHH
Q 009665          226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPAL  304 (529)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~v~~~al  304 (529)
                      +++............+.+|.++++++++-.........|+.|++-++-. ...+++.|++.+|+.+|+..+ ++++..|.
T Consensus       277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAv  355 (550)
T KOG4224|consen  277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAV  355 (550)
T ss_pred             hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHH
Confidence            9999876666677789999999999998888888888999999987643 356889999999999998864 55999999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhH
Q 009665          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  384 (529)
Q Consensus       305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v  384 (529)
                      .+|.|++...+.....+.+.|.+|.+..++.+. .-.++.+...+++.++.. ......+.+.|++|.|+.+..+.+.++
T Consensus       356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev  433 (550)
T KOG4224|consen  356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEV  433 (550)
T ss_pred             HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhh
Confidence            999999998888899999999999999999998 889999999999988876 555678899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHH------cCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          385 KKEAAWAISNATSGGSNEQIKFLVS------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      +..|+.+|.|++..  .++...+.+      .|+-..|.+++.+.+.-++..+.|.+..++...
T Consensus       434 ~gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  434 RGNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             cccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            99999999999984  355555443      355677888888888888888999988888654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-29  Score=225.12  Aligned_cols=404  Identities=22%  Similarity=0.232  Sum_probs=330.9

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      +-+....+...+++.++.+|..+..++.+++-..  ...-.++..+++..|+.-+..+. .++|..++.|++|++.- ++
T Consensus        83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~--enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~  158 (550)
T KOG4224|consen   83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNM--ENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DS  158 (550)
T ss_pred             hhhhhhHHHHHHhCcchhhhhhhhhhhccceecc--CCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-cc
Confidence            3356778888899999999999999999887532  33444556667776666555555 68999999999999984 77


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      .+..+...|++.++.++-++.+..++.++..+|.|+... .+.|..+...|.++.|+.++ +..++.++..++.++++++
T Consensus       159 nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIa  236 (550)
T KOG4224|consen  159 NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIA  236 (550)
T ss_pred             chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhh
Confidence            888899999999999988889999999999999999744 45789999999999999999 8899999999999999998


Q ss_pred             cCCCCCchhhh--hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009665          229 RGKPQPLFEQT--RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (529)
Q Consensus       229 ~~~~~~~~~~~--~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~  306 (529)
                      -..........  ..++|.|+.++.++++.++-.+..+|.+++.... +...++++|.+|.++++|+++........+.|
T Consensus       237 Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaC  315 (550)
T KOG4224|consen  237 VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVAC  315 (550)
T ss_pred             hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHH
Confidence            87633333333  3499999999999999999999999999997654 55679999999999999999988889999999


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHH
Q 009665          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  386 (529)
Q Consensus       307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~  386 (529)
                      +.|++-+.- ....+.+.|++.+|+.+|....+.+++..|..+|.|++..+.+....+.++|.+|.++.++.++...++.
T Consensus       316 Irnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqs  394 (550)
T KOG4224|consen  316 IRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQS  394 (550)
T ss_pred             HhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHH
Confidence            999987533 3345678999999999999885677999999999999998888899999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh--
Q 009665          387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--  464 (529)
Q Consensus       387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~--  464 (529)
                      +...++..++..  .....+|.+.|+++.|+.++.+.+.+++..+..+|.|+...-+.            |...++--  
T Consensus       395 eisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~------------YarviEawd~  460 (550)
T KOG4224|consen  395 EISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH------------YARVIEAWDH  460 (550)
T ss_pred             HHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH------------HHHHHHHhcC
Confidence            999999999885  36778899999999999999999999999999999999765432            34444321  


Q ss_pred             ---chHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          465 ---EGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       465 ---g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                         |.-..|.++..++.-.+...|.|-|..+.+
T Consensus       461 P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle  493 (550)
T KOG4224|consen  461 PVQGIQGRLARFLASHELTFRHIARWTIQQLLE  493 (550)
T ss_pred             cchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence               222234444444445555555555554443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=1.4e-24  Score=220.73  Aligned_cols=394  Identities=19%  Similarity=0.186  Sum_probs=319.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  153 (529)
                      +++-..++.++ .+...++..|.+++..  ......+...|+++.|+++|.+++ .++...++.+|.+++. ..+++..+
T Consensus       253 kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM  327 (708)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            34444444443 4445677888888743  355667889999999999999988 8999999999999998 78899999


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009665          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  233 (529)
Q Consensus       154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  233 (529)
                      .+.|+++.|.+++.+++.+++..++++|.|++.+.. .|..+...|++|.|+.+|..   +..+..++.+|.+++.....
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence            999999999999999999999999999999997765 69999999999999999942   34556788999999998765


Q ss_pred             CchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009665          234 PLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (529)
Q Consensus       234 ~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~  312 (529)
                      .......+++|.+++++. .+++.+...+++.+.|++.+.. +.+.+.+.++++.|+.........   ..+.++.|++.
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~  479 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQ  479 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHh
Confidence            666666789999998765 4577788888999999998764 557888888999999887554332   24578889988


Q ss_pred             CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHH
Q 009665          313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAW  390 (529)
Q Consensus       313 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~  390 (529)
                      +.+.... .+. +.+..|+.++..+.+.+...++..+|+|+...+.+....+-+.+++|.|.+.|..+  ++++..+++.
T Consensus       480 h~~~~k~-~f~-~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGPLKE-LFV-DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCchHHH-HHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            7644333 332 46777778887766889999999999999987555555555789999999999876  5689999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHcCChHHHHhccCC--CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHH
Q 009665          391 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE  468 (529)
Q Consensus       391 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~  468 (529)
                      .++.++.  ++.....+.+.|+++.|+++|..  .|.+++..++.+++.++...+..            ..++.+.+...
T Consensus       558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr------------~~ll~~~~~~~  623 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR------------EVLLKETEIPA  623 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH------------HHHHhccchHH
Confidence            9999987  67888999999999999999974  66889999999999999886542            55667889999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009665          469 KIENLQSHDNTEIYEKAVKILETYWVEE  496 (529)
Q Consensus       469 ~l~~L~~~~~~~v~~~a~~il~~~~~~~  496 (529)
                      .+..|.++.|++|+..|..+|+-.-+.|
T Consensus       624 ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  624 YLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            9999999999999988877766554443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=1.4e-24  Score=220.78  Aligned_cols=365  Identities=19%  Similarity=0.215  Sum_probs=304.5

Q ss_pred             hhhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009665           67 NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT  146 (529)
Q Consensus        67 ~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~  146 (529)
                      ..+-+.++.|++.|.+++.++...++..|.++.-.  ..+...+.+.|+++.|.+++.+++ .+++..++++|.|++. +
T Consensus       286 M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d  361 (708)
T PF05804_consen  286 MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-D  361 (708)
T ss_pred             HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-C
Confidence            34457899999999999999999999999997543  456788899999999999999988 8999999999999999 7


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665          147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (529)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  226 (529)
                      ++.+..+++.|++|.|+.+|.++  ..+..|+.+|.+++.+. ..|..+...++++.+++++..+++..+...+++++.|
T Consensus       362 ~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN  438 (708)
T PF05804_consen  362 PELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN  438 (708)
T ss_pred             HHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence            89999999999999999999864  46677999999999865 4789999999999999998677777777888999999


Q ss_pred             hhcCCCCCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHHH
Q 009665          227 FCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPAL  304 (529)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al  304 (529)
                      ++............++++.|+...-. .|+-    .+..+.|++.++......+.  +.+..|+.++.. ++++....++
T Consensus       439 La~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~L  512 (708)
T PF05804_consen  439 LALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECL  512 (708)
T ss_pred             HhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHH
Confidence            99987555555666888888876543 3433    34588999988754433333  577777788766 4678899999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--C
Q 009665          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--E  381 (529)
Q Consensus       305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~  381 (529)
                      ++|+|+...+......+-+.+++|++...|..+. .+++..+++..++.++.. +.....+.+.|+++.|+.+|...  |
T Consensus       513 GiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeD  591 (708)
T PF05804_consen  513 GILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQED  591 (708)
T ss_pred             HHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCch
Confidence            9999999877677776778899999999997652 457899999999999875 77777888999999999999885  7


Q ss_pred             hhHHHHHHHHHHHHhcCCCHHHHHHHH-HcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 009665          382 FEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN  447 (529)
Q Consensus       382 ~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~  447 (529)
                      .++....++++..+..+.  +.+..++ +.+++..|++++++.++.++..|-.+|.-+...++.+..
T Consensus       592 dE~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~  656 (708)
T PF05804_consen  592 DEIVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAE  656 (708)
T ss_pred             HHHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            899999999999999974  4555554 468999999999999999999999999999988876643

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=5.4e-20  Score=181.86  Aligned_cols=391  Identities=19%  Similarity=0.285  Sum_probs=315.7

Q ss_pred             cHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           72 SLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        72 ~l~~l~~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      .+..|+..|+.. |+..|++|+..++.+++..+.+....+--..++|.|+.+|+.+.+.++...|+++|++++.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            577888889865 9999999999999999987666665555567899999999999889999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          151 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      ..+++.++||.|+.-|.. +..++.++++.+|-.|+.+.+   ..+++.|++..++..| +-.+..+++.|+.+.+|.|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999986655 889999999999999998766   3678999999999999 77789999999999999999


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC---CchhHHHHHHhCcHHHHHHhcCCC----CcchHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHP----SPSVLIP  302 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~----~~~v~~~  302 (529)
                      .-+...+..+...+|.|..+|+..|....+.+|-++.++++.   .++..+.+...|++....+++.-.    +..+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            887788888899999999999999999999999999999853   557778888999999999998654    3345667


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-------------ch-hHHHHHH---------------------
Q 009665          303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------------KK-SIKKEAC---------------------  347 (529)
Q Consensus       303 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-------------~~-~v~~~a~---------------------  347 (529)
                      .++.+..++.+++-....++..++...+..+|....             .+ ++-...+                     
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            888999999988877777888888888877774421             00 0000000                     


Q ss_pred             ------------------------------HHHH-------------HHh---------cCCHHHHHHHHHcCCHHHHHH
Q 009665          348 ------------------------------WTIS-------------NIT---------AGNVNQIQAIIEAGIIGPLVN  375 (529)
Q Consensus       348 ------------------------------~~L~-------------nl~---------~~~~~~~~~l~~~~~l~~L~~  375 (529)
                                                    ..+.             +.-         ...|+..+.++. .++|.|++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve  562 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE  562 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence                                          0111             000         011233333333 38999999


Q ss_pred             HHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCc
Q 009665          376 LLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGG  453 (529)
Q Consensus       376 ~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~  453 (529)
                      ++.+. ++.||..++.||..+....+.+.+..++.. .+-..+-.+|.++|..|+..+|.....|++.-..         
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd---------  633 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD---------  633 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH---------
Confidence            99886 999999999999999999888888777655 4456777899999999999999999988876543         


Q ss_pred             cchHHHHHHhhchHHHHHHHhcCCC
Q 009665          454 VNLFAQAIDDAEGLEKIENLQSHDN  478 (529)
Q Consensus       454 ~~~~~~~i~~~g~~~~l~~L~~~~~  478 (529)
                        .|...|.+.|.+..++.|....+
T Consensus       634 --~F~~~F~REGV~~~v~~L~~~~~  656 (1051)
T KOG0168|consen  634 --TFSPSFRREGVFHAVKQLSVDSN  656 (1051)
T ss_pred             --HhhhhHhhhhHHHHHHHHhccCC
Confidence              37888999999999999976433

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.82  E-value=3.8e-18  Score=169.83  Aligned_cols=367  Identities=20%  Similarity=0.224  Sum_probs=282.6

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--h
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--C  191 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~  191 (529)
                      --+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+++.+++.+|+|+|.||......  .
T Consensus       233 ~~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  233 PTLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             cccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            34688899999888 99999999999999999999999999999999999999999999999999999999965544  6


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc--------------CChHH
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS--------------NDDEV  257 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~--------------~d~~v  257 (529)
                      +-.+.+.+.++.++.+|....|.++++.+..+|+||+..+ ..........+..|...+-.              .+.++
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v  390 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV  390 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence            7788899999999999987789999999999999999984 44445556666666544421              13678


Q ss_pred             HHHHHHHHHHhccCCchhHHHHHH-hCcHHHHHHhcCC------CCcchHHHHHHHHHHhhcCChh-----h--------
Q 009665          258 LTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM-----Q--------  317 (529)
Q Consensus       258 ~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~~-----~--------  317 (529)
                      ..++..||.|++....+..+.+.+ .|++..|+..+.+      .+....+.|+-++.|+...-..     .        
T Consensus       391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~  470 (717)
T KOG1048|consen  391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA  470 (717)
T ss_pred             eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence            899999999999866555555544 4889999888753      3455677788888888642210     0        


Q ss_pred             ------------------HHH----------------------HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 009665          318 ------------------TQC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  357 (529)
Q Consensus       318 ------------------~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  357 (529)
                                        ...                      +.+..++..-+.+|....++.+.+.++.+|-|++++.
T Consensus       471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~  550 (717)
T KOG1048|consen  471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL  550 (717)
T ss_pred             ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence                              000                      1112234444455544436788899999999999952


Q ss_pred             ----HHHHHHH-HHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC------HH
Q 009665          358 ----VNQIQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PR  426 (529)
Q Consensus       358 ----~~~~~~l-~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~------~~  426 (529)
                          ......+ .+..++|.|+++|..++.+|.+.++.+|.|++.+.  .. +.++-.++++.|++.|....      .+
T Consensus       551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sed  627 (717)
T KOG1048|consen  551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSED  627 (717)
T ss_pred             CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence                2233344 46789999999999999999999999999999853  33 44455889999999997533      57


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhc-CCCHHHHHHHHHHHHhhCCCCC
Q 009665          427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYWVEED  497 (529)
Q Consensus       427 v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~-~~~~~v~~~a~~il~~~~~~~~  497 (529)
                      ++..++..|.+++......            ..-+-+.+|+++|..+.. ..++++.+.|..++..++...+
T Consensus       628 tv~~vc~tl~niv~~~~~n------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  628 TVRAVCHTLNNIVRKNVLN------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHHhHHHHHHHhHHH------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999665432            334446889999998854 4667899999999999988654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.79  E-value=1.2e-15  Score=154.56  Aligned_cols=399  Identities=18%  Similarity=0.205  Sum_probs=298.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  153 (529)
                      +.++.+|++.+.+....++..|.+++...  .+...  ..+..+.|...|.+++ +.+|..+++.|.+++.++......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            34888899888888888899999998653  22222  4567889999999998 9999999999999999777777888


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009665          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  233 (529)
Q Consensus       154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  233 (529)
                      .+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            88999999999999999999999999999999877654 5577778888888888 445667788899999999887633


Q ss_pred             C-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC--c---chH-HHHHHH
Q 009665          234 P-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--P---SVL-IPALRT  306 (529)
Q Consensus       234 ~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~--~---~v~-~~al~~  306 (529)
                      . ......|+++.++..+.++|.-++.+++..|..++.. +...+.+.+.|+++.|+.++.+..  +   .+. ...+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            2 3334468999999999999999999999999999994 455688999999999999996642  2   222 234477


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC-----CHHHHHHHHhcC
Q 009665          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAG-----IIGPLVNLLLNA  380 (529)
Q Consensus       307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~-----~l~~L~~~l~~~  380 (529)
                      .++++...+....... ..++..+..++.+. ++..+..|.-+++.++.. .+....+ ...+     ++..+.....++
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~  349 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG  349 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence            8888875443332211 23555666777777 899999999999999975 5666666 3322     344555555566


Q ss_pred             ChhHHHHHHHHHHHHhcCCCH---HHHHHH-------HHcCChH-HHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcC
Q 009665          381 EFEIKKEAAWAISNATSGGSN---EQIKFL-------VSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMG  449 (529)
Q Consensus       381 ~~~v~~~a~~aL~nl~~~~~~---~~~~~l-------~~~~~l~-~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~  449 (529)
                      ..++|..++.++.++....+.   +.+..+       ...+... .+..+++.+=++++..++..|..++...-.     
T Consensus       350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg-----  424 (503)
T PF10508_consen  350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG-----  424 (503)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence            778999999999999665432   111111       1233444 888899988899999999999999866421     


Q ss_pred             CCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          450 NTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       450 ~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                             ...+....|.++.+-+=....+++..+.=..++..+...
T Consensus       425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~  463 (503)
T PF10508_consen  425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS  463 (503)
T ss_pred             -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence                   244555566666665545556777777777777777643

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.79  E-value=7.9e-16  Score=155.81  Aligned_cols=368  Identities=17%  Similarity=0.183  Sum_probs=283.2

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009665          117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL  196 (529)
Q Consensus       117 ~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  196 (529)
                      +.+...|++.+ .+....++.+|..+.... .....  ..+..+.|...|.++++.+|..+++.|++++.++......+.
T Consensus        41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            34788888776 777788888999888732 22221  446779999999999999999999999999988887778888


Q ss_pred             hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhH
Q 009665          197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI  276 (529)
Q Consensus       197 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~  276 (529)
                      +.++++.++.++ .+++..+...|+.+|..++...+........+.++.|..++...++.++..++.++.+++..+++..
T Consensus       117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            899999999999 8889999999999999999876444444445668889999988888999999999999999999888


Q ss_pred             HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchh-----HHHHHHHHHH
Q 009665          277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-----IKKEACWTIS  351 (529)
Q Consensus       277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~-----v~~~a~~~L~  351 (529)
                      ..+.+.|+++.++..+.+++.-++..++.+|..++. .+...+.+.+.|+++.|..++.+.....     .-.......+
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            999999999999999999888899999999999999 6777888999999999999996652222     1223346677


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHH-HHc-----CChHHHHhccCCCCH
Q 009665          352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL-VSQ-----GCIKPLCDLLNCPDP  425 (529)
Q Consensus       352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l-~~~-----~~l~~L~~lL~~~~~  425 (529)
                      +++...+..+..... .++..+.+++.+.|+..+..|..+++.++.  +.+....| ...     .++..+.........
T Consensus       275 ~la~~~~~~v~~~~p-~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  275 NLARVSPQEVLELYP-AFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHhcChHHHHHHHH-HHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            777754554433332 367777788888899999999999999986  45665555 322     236666666777888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhc--hHH-HHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009665          426 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE--GLE-KIENLQSHDNTEIYEKAVKILETYWVEE  496 (529)
Q Consensus       426 ~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g--~~~-~l~~L~~~~~~~v~~~a~~il~~~~~~~  496 (529)
                      +++..++.+|.+++.........   .-.+.....++..+  -.. .+..+...+=+|++-.+..++...+...
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~---~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~  422 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDN---DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP  422 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence            99999999999998765431100   00011122222222  233 6677788888999999999999887754

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.79  E-value=5e-17  Score=161.94  Aligned_cols=363  Identities=20%  Similarity=0.244  Sum_probs=276.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh--h
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--N  149 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~  149 (529)
                      .+|+.+.+|.+.++.+|..|+..+..+.. .++.....+.+.|.|+.|+.+|.+.. .+++..|+++|.|+..+...  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcf-gd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCF-GDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHh-hhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            68999999999999999999988888654 44555667778999999999999999 99999999999999997765  7


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------------chhHH
Q 009665          150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------------HAKLS  215 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~-------------~~~~~  215 (529)
                      .-.+.+.++|+.++++|+. .|.++++.+..+|+||+..+ .++..++. ..+..|...+..             ..+.+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence            8888899999999999987 89999999999999999773 35444443 456666554421             11367


Q ss_pred             HHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhhc------cCChHHHHHHHHHHHHhccCCch-----h-------
Q 009665          216 MLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTND-----K-------  275 (529)
Q Consensus       216 ~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~L~~l~~~~~~-----~-------  275 (529)
                      +..++..+|.|++...  ....+....|.+..|+..++      ..|..-.+++.-.+.|++..-..     .       
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            8999999999999865  23334456788888887776      23666778888888888742210     0       


Q ss_pred             -------------------HHH----------------------HHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcC
Q 009665          276 -------------------IQA----------------------VIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       276 -------------------~~~----------------------~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~  313 (529)
                                         ...                      +....++..-+.+| .+.+..+.+.++.+|-|++.+
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                               000                      11112333323333 334567888999999999987


Q ss_pred             Chhh----HHHH-HhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC------Ch
Q 009665          314 DDMQ----TQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EF  382 (529)
Q Consensus       314 ~~~~----~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~------~~  382 (529)
                      ....    +..+ .+..+++.|+.+|..+ +..+.+.++.+|.|++.+ .. .+.++....++.|++.|...      +.
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~se  626 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLSE  626 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence            6422    3333 4778999999999999 999999999999999987 33 35566688999999999875      35


Q ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhh
Q 009665          383 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       383 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~  442 (529)
                      ++...+|.+|.|++.. +....+-+.+.+.++.|+-+.++. ++++.+++...|..|=.+.
T Consensus       627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            8889999999999975 568888899999999999988764 4577777777777665443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=3.6e-15  Score=154.03  Aligned_cols=388  Identities=15%  Similarity=0.153  Sum_probs=272.6

Q ss_pred             hhHHHHHHHHHHhhHHHHHhhhhhcccCCCCccchhhhhhhhhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCCh
Q 009665           28 RREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPP  106 (529)
Q Consensus        28 ~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~  106 (529)
                      -|+-.+|.+||.-..  .|++-....        ++       ..-..++..+. ...+.+++.-+..+..+++..-+. 
T Consensus        53 ~Rq~aaVl~Rkl~~~--~w~~l~~e~--------~~-------siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-  114 (1075)
T KOG2171|consen   53 VRQLAAVLLRKLLTK--HWSRLSAEV--------QQ-------SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-  114 (1075)
T ss_pred             HHHHHHHHHHHHHHH--HhhcCCHHH--------HH-------HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence            367788888876433  555443211        11       01234555554 456789999999999988765211 


Q ss_pred             hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009665          107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG  186 (529)
Q Consensus       107 ~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  186 (529)
                          --.++++.|++..++++ +..|+.|+.+|..+...-...-...+ ..+.+.|.+.+.+++..+|..++++++.++.
T Consensus       115 ----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~  188 (1075)
T KOG2171|consen  115 ----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAE  188 (1075)
T ss_pred             ----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence                22346777777788888 99999999999999873222211111 0234666667777766699999999999985


Q ss_pred             CCc---hhHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC--ChHHH
Q 009665          187 DSP---KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVL  258 (529)
Q Consensus       187 ~~~---~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~  258 (529)
                      ..+   ..++.+.  ..+|.++..+.   ...+......++.+|..|....|..-......++.....+..+.  ++.+|
T Consensus       189 ~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R  266 (1075)
T KOG2171|consen  189 YLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIR  266 (1075)
T ss_pred             HhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHH
Confidence            442   2222222  35666777664   34466667888888888888876666666677777777777655  67888


Q ss_pred             HHHHHHHHHhccCCchhHHH---------------------------------------------HHH------------
Q 009665          259 TDACWALSYLSDGTNDKIQA---------------------------------------------VIE------------  281 (529)
Q Consensus       259 ~~a~~~L~~l~~~~~~~~~~---------------------------------------------~~~------------  281 (529)
                      ..++.+|..++...+...+.                                             .++            
T Consensus       267 ~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~  346 (1075)
T KOG2171|consen  267 HLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL  346 (1075)
T ss_pred             HHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh
Confidence            88888888776542111110                                             000            


Q ss_pred             hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 009665          282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  361 (529)
Q Consensus       282 ~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  361 (529)
                      .-+++.+-.++.++++..|..++.+|+.++.|+.......++ .+++.++..|+++ ++.||..||.+++.++..-...+
T Consensus       347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHH
Confidence            013444555667888889999999999999999988777665 7899999999999 99999999999999998655555


Q ss_pred             HHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH-HHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          362 QAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       362 ~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      +.-...-+.|.|+..+.+. +++|+..|+.++.|++..+..+.+.... .+++. .|..++.++.+.+++.++.+|..+.
T Consensus       425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            5555566888999999886 7799999999999999987766554322 24566 5555667788899999999999988


Q ss_pred             Hhhhh
Q 009665          440 KAGEA  444 (529)
Q Consensus       440 ~~~~~  444 (529)
                      ...+.
T Consensus       504 ~AA~~  508 (1075)
T KOG2171|consen  504 DAAQE  508 (1075)
T ss_pred             HHHhh
Confidence            77653

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.75  E-value=3.4e-16  Score=144.43  Aligned_cols=381  Identities=16%  Similarity=0.141  Sum_probs=273.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC--CCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009665           82 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  159 (529)
Q Consensus        82 s~~~~~~~~a~~~l~~lls~~--~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  159 (529)
                      ..+..+...+..++.+....+  ++.....-++.+++..|.+..++++ .++..++.++|+|++..+.+.|..+.+.|+-
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            344556666666666655322  1112233356788888888888887 8999999999999999999999999999997


Q ss_pred             HHHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-cchhHHHHHHHHHHHhhhhcCC
Q 009665          160 PIFVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       160 ~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      ..++.+|+.       .+.+....+...|.|...++...+..+.+.|+++.|...+. ...+..........+.++..-.
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            888887764       23577788889999999999999999999999999888874 2334443344333333333221


Q ss_pred             C--CCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCc-------chH
Q 009665          232 P--QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSP-------SVL  300 (529)
Q Consensus       232 ~--~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~-------~v~  300 (529)
                      .  -..+.....+.-.+++++.+ ..+++...+...+.+.++++.-. -.+.+.|.+..++.+++. +..       ...
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence            0  11222234455566666654 36778888899999998876544 347778999999999865 221       123


Q ss_pred             HHHHHHHHHhhcCChhhHHHHHhcC-ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009665          301 IPALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  379 (529)
Q Consensus       301 ~~al~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~  379 (529)
                      ..++....-+..|++ ..+.+...+ ++..+..++.+. +....-.+..+|+|+++. ++.+.++++.+++..|++++..
T Consensus       291 k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556544 445565555 899999999998 999999999999999998 5667788899999999999875


Q ss_pred             -----CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCcc
Q 009665          380 -----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV  454 (529)
Q Consensus       380 -----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~  454 (529)
                           ++.+++..++.||.|+....  .....+...|+.+.++..++...|.+....++.++.+...-++.         
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~---------  436 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI---------  436 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence                 36788999999999998743  45566788999999999999999999999999998776554422         


Q ss_pred             chHHHHHHhhchHHHHHHHhcCCCHH
Q 009665          455 NLFAQAIDDAEGLEKIENLQSHDNTE  480 (529)
Q Consensus       455 ~~~~~~i~~~g~~~~l~~L~~~~~~~  480 (529)
                        .+++...-..+++|.....+++-.
T Consensus       437 --a~eL~kn~~l~ekLv~Wsks~D~a  460 (604)
T KOG4500|consen  437 --ACELAKNPELFEKLVDWSKSPDFA  460 (604)
T ss_pred             --HHHHhcCHHHHHHHHHhhhCCccc
Confidence              233333334455666666655533

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.2e-14  Score=136.17  Aligned_cols=360  Identities=15%  Similarity=0.164  Sum_probs=280.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+.-++++|..++.++.......|.++. .- .++...+.+.|++..|++++...+ ++++...+..+.|++. +...+.
T Consensus       305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLS-If-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~  380 (791)
T KOG1222|consen  305 IVAMLVKALDRSNSSLLTLVIKFLKKLS-IF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP  380 (791)
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHhh-hh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence            4678889999888888888888888864 33 456778889999999999999999 9999999999999999 678889


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      .++..|.+|.|..++.+..  -...|+..+..++-++. .+.++....+++.+++.+..+.+..+-.......-|+|.++
T Consensus       381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            9999999999999997643  23457777888876654 68888888999999988867777777777777778899887


Q ss_pred             CCCchhhhhchHHHHHHh-hccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHH
Q 009665          232 PQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGN  309 (529)
Q Consensus       232 ~~~~~~~~~~~l~~L~~l-l~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~  309 (529)
                      ...+.......+..|... +...|+-+    ...+.+++.+.......+++  .+..|..++.. +++.....|+++++|
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlan  531 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLAN  531 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence            666666667777776654 44555543    34577888877655455554  35556666654 456788899999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHH
Q 009665          310 IVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKK  386 (529)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~  386 (529)
                      +.-..-.+...+-+.+++|++...|...- ..++....+.+++.++.. ......+..+++++.++++|+..  |.+...
T Consensus       532 L~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~  610 (791)
T KOG1222|consen  532 LKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVV  610 (791)
T ss_pred             cccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence            99877777777778899999999997642 345777778888888775 45555566889999999999874  778888


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHH-HcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 009665          387 EAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN  447 (529)
Q Consensus       387 ~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~  447 (529)
                      ..+++...+..+  ...+.+++ +...-..|++++++.+.+++.+|-.+|..+...+..+.+
T Consensus       611 QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK  670 (791)
T KOG1222|consen  611 QIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK  670 (791)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence            899999999886  24445554 446678899999999999999999999988887766554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.73  E-value=1.5e-15  Score=157.89  Aligned_cols=363  Identities=19%  Similarity=0.195  Sum_probs=275.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhhH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      ...+..++...|.   ..-.+.|..+.+.  ......+...|.+|.|+++|.-++  +.+.+..|-.+|.||....++..
T Consensus       199 s~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k  273 (2195)
T KOG2122|consen  199 SNSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK  273 (2195)
T ss_pred             hhHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence            3355556666555   4556666666543  355677889999999999997554  25788999999999998777665


Q ss_pred             HHHHhCCChHHHHH----------hhCC-----CCHHHHH---HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--
Q 009665          151 RVVIDHGAVPIFVR----------LLSS-----PTDDVRE---QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--  210 (529)
Q Consensus       151 ~~~~~~g~i~~L~~----------lL~~-----~~~~v~~---~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--  210 (529)
                      ..-.+..++..|-+          .+..     .+..+..   .|+.+|..++.+ .+.|..+.+.|++..+-.++.-  
T Consensus       274 r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh  352 (2195)
T KOG2122|consen  274 RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDH  352 (2195)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44444344443332          2221     1222222   455556665544 5689999999999998887741  


Q ss_pred             ---------chhHHHHHHHHHHHhhhhcCCC--CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHH-
Q 009665          211 ---------HAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-  278 (529)
Q Consensus       211 ---------~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~-  278 (529)
                               .....+++++..+|.||..++.  ........+++..++..|.+..+++..-....|.||+...+..... 
T Consensus       353 ~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkv  432 (2195)
T KOG2122|consen  353 EMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKV  432 (2195)
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHH
Confidence                     1245789999999999999982  2333445899999999999888899988999999999665555444 


Q ss_pred             HHHhCcHHHHHHh-cCCCCcchHHHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHHhccCC---chhHHHHHHHHHHHH
Q 009665          279 VIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY---KKSIKKEACWTISNI  353 (529)
Q Consensus       279 ~~~~~~~~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl  353 (529)
                      +-+.|-+..|+.. |....+......+.+|+||+.++.+....+- -.|++.+|+.+|....   .-.|...|..+|.|+
T Consensus       433 LrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNV  512 (2195)
T KOG2122|consen  433 LRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNV  512 (2195)
T ss_pred             HHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHH
Confidence            4455878888776 4556667889999999999988776655543 4589999999996541   345667777888877


Q ss_pred             hc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHH
Q 009665          354 TA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV  430 (529)
Q Consensus       354 ~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~  430 (529)
                      ..   .+..+++.+.+++++..|+..|++....+..++|.+|+||+.. +++..++|++.|.+..|..++++.+..+..-
T Consensus       513 SS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~G  591 (2195)
T KOG2122|consen  513 SSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMG  591 (2195)
T ss_pred             HhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhh
Confidence            65   5677888888999999999999999999999999999999987 5688899999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 009665          431 CLEGLENILKAG  442 (529)
Q Consensus       431 ~l~aL~~l~~~~  442 (529)
                      ...+|.|++..-
T Consensus       592 SaaALrNLln~R  603 (2195)
T KOG2122|consen  592 SAAALRNLLNFR  603 (2195)
T ss_pred             HHHHHHHHhcCC
Confidence            999999999765

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=2.3e-14  Score=128.43  Aligned_cols=318  Identities=15%  Similarity=0.181  Sum_probs=250.0

Q ss_pred             hcCChHHHHHhh---cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009665          112 QSGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAG  186 (529)
Q Consensus       112 ~~g~i~~Li~lL---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~  186 (529)
                      ..|..+.++.++   .+++ ..+-..++.+|..+..+.|+    +.+..++..++.+|..  ++.++....+..+..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            345555444433   3444 67888899999888886665    4567788999998865  678888888888888888


Q ss_pred             CCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC-c---------hhhhhchHHHHHHhhccC-Ch
Q 009665          187 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-L---------FEQTRPALPALERLIHSN-DD  255 (529)
Q Consensus       187 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~---------~~~~~~~l~~L~~ll~~~-d~  255 (529)
                      .+...|+.+++.++++.+...|.......+.+.++|++..|...+... .         ...-.+++..|+..++-. ||
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            888899999999999999988866666689999999999998765221 1         112245677888888744 79


Q ss_pred             HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCc----chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHH
Q 009665          256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP----SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  331 (529)
Q Consensus       256 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~----~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  331 (529)
                      .+...++.+|..|+-.+ +..+.+.+.|++..|+.++.+.+.    .....++..|..++. ++.....+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence            99999999999999765 456779999999999999987432    244678888888875 677788899999999999


Q ss_pred             HHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 009665          332 DLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLV  408 (529)
Q Consensus       332 ~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~  408 (529)
                      .++ .+..+|.|..+++.+++-++--+|++-..+++.|+-...++.|+..  ...++++|||.+.|+...+ .++...++
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l  413 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILL  413 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHH
Confidence            877 4444889999999999999998899999999999999999999875  4579999999999999874 46767766


Q ss_pred             HcCChHHHHhccCCCCHHHHHHHHHHHHHH
Q 009665          409 SQGCIKPLCDLLNCPDPRIVTVCLEGLENI  438 (529)
Q Consensus       409 ~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l  438 (529)
                      .. +++.|+..-+..++.....+-.+|.-+
T Consensus       414 ~~-GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  414 AN-GIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             hc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            65 477777777777777777777777655

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.3e-14  Score=134.14  Aligned_cols=379  Identities=17%  Similarity=0.132  Sum_probs=281.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009665           83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF  162 (529)
Q Consensus        83 ~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  162 (529)
                      ..+.+...|+..|.+++..  ...-..+...+++..|++.|...+ .++.......|..++- -.+++..+.+.|++..|
T Consensus       275 KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL  350 (791)
T KOG1222|consen  275 KQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL  350 (791)
T ss_pred             HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence            3455666777888887743  334456778899999999999988 7888888888988887 56788889999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhch
Q 009665          163 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA  242 (529)
Q Consensus       163 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  242 (529)
                      ++++...+++++...+..+.|++.++. .|..++..|.+|.+..++..+...   ..|...+..++.++....+.....+
T Consensus       351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdc  426 (791)
T KOG1222|consen  351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDC  426 (791)
T ss_pred             HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHH
Confidence            999999999999999999999998875 678888999999999999544332   3355667777777655556666889


Q ss_pred             HHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcCChhhHHH
Q 009665          243 LPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQC  320 (529)
Q Consensus       243 l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~  320 (529)
                      ++.+.+.+-+ .+.+|-...+....|+|-+.. +.+.+++...+..|++.. ...++ .   -...+.|++.+.......
T Consensus       427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~  501 (791)
T KOG1222|consen  427 IKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNM  501 (791)
T ss_pred             HHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHH
Confidence            9988876553 456665555555567775542 346667766777777664 33332 2   345667777765544444


Q ss_pred             HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcC
Q 009665          321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG  398 (529)
Q Consensus       321 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~  398 (529)
                      +++  .+.-|...++...+.....++..+++|+....-+-...+-+.+++|.+-..|..+  ..+++...+.+++.++. 
T Consensus       502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-  578 (791)
T KOG1222|consen  502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-  578 (791)
T ss_pred             HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-
Confidence            443  4556666666654677888999999999986555555566788999999999876  56788888999999887 


Q ss_pred             CCHHHHHHHHHcCChHHHHhccCC--CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC
Q 009665          399 GSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH  476 (529)
Q Consensus       399 ~~~~~~~~l~~~~~l~~L~~lL~~--~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~  476 (529)
                       +......+...++++.|+++|+.  .|.+++..++..+..++.....            ..-++.+...-..+..|+++
T Consensus       579 -d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHD  645 (791)
T KOG1222|consen  579 -DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHD  645 (791)
T ss_pred             -hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhc
Confidence             44677777888999999999974  5677877888888888776432            24566677777889999999


Q ss_pred             CCHHHHHHHHHHHH
Q 009665          477 DNTEIYEKAVKILE  490 (529)
Q Consensus       477 ~~~~v~~~a~~il~  490 (529)
                      .|.+|++-+...|.
T Consensus       646 kN~eiRkVCDn~Ld  659 (791)
T KOG1222|consen  646 KNAEIRKVCDNALD  659 (791)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99998876655443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.8e-15  Score=146.68  Aligned_cols=359  Identities=18%  Similarity=0.227  Sum_probs=231.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhh-HHh---hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN-EVI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT  146 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~-~~i---~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~  146 (529)
                      +.+|.|.+.|.+++...+.-|..+|.++..... ...+ .+.   -.-.+|.++++.++++ |.+|..|+.|+..+.-..
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa-~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSA-QFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhH-HHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence            358999999999999999999999999875321 1111 010   1236899999999998 999999999998887643


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHHHhccchhHHHHHHHHHHHh
Q 009665          147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEHAKLSMLRNATWTLS  225 (529)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  225 (529)
                      +.....-++ ..+..+..+-..++++||.+.+.++.-+....+.  ..+- -.++++.++... ++.+..+.-.||....
T Consensus       206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFwl  281 (885)
T KOG2023|consen  206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWL  281 (885)
T ss_pred             cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHH
Confidence            333222222 3456677777779999999999999999865442  1111 123455555555 6678889999999999


Q ss_pred             hhhcCCC--CCchhhhhchHHHHHHhhccCChHH--HH------------------------------------------
Q 009665          226 NFCRGKP--QPLFEQTRPALPALERLIHSNDDEV--LT------------------------------------------  259 (529)
Q Consensus       226 ~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v--~~------------------------------------------  259 (529)
                      .++...-  .........++|.|+.-+.-.+.++  ..                                          
T Consensus       282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D  361 (885)
T KOG2023|consen  282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD  361 (885)
T ss_pred             HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence            9998861  1222345677777765443211110  00                                          


Q ss_pred             ----HHHHHHHHhccCCchhHHHHHHhCcH----HHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHH
Q 009665          260 ----DACWALSYLSDGTNDKIQAVIEAGVC----PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  331 (529)
Q Consensus       260 ----~a~~~L~~l~~~~~~~~~~~~~~~~~----~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  331 (529)
                          ..-|-|...+...-+....+....++    |.|-+.|.++.+.+++.++.++|.++.|.-...-.-+. .++|.++
T Consensus       362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~  440 (885)
T KOG2023|consen  362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLL  440 (885)
T ss_pred             cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHH
Confidence                00122222221111112223333444    44555567789999999999999999876433221111 4789999


Q ss_pred             HHhccCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 009665          332 DLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS  409 (529)
Q Consensus       332 ~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  409 (529)
                      .+|.+. .+-||.-+||+|+..+.-  +.+.-+++..  ++..|+..+-+++.+|++.||.|+..+-..+.++-+.++-.
T Consensus       441 ~~L~DK-kplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~  517 (885)
T KOG2023|consen  441 SLLDDK-KPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY  517 (885)
T ss_pred             HHhccC-ccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            999998 999999999999998761  1121122222  55566666667888999999999999988777676666532


Q ss_pred             cCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          410 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       410 ~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                        ++..|...+.....+-.....+|++.+...
T Consensus       518 --IL~~l~~af~kYQ~KNLlILYDAIgtlAds  547 (885)
T KOG2023|consen  518 --ILDQLVFAFGKYQKKNLLILYDAIGTLADS  547 (885)
T ss_pred             --HHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence              455555555433333333445666666554

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=6e-14  Score=125.83  Aligned_cols=309  Identities=12%  Similarity=0.124  Sum_probs=247.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009665           82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVP  160 (529)
Q Consensus        82 s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  160 (529)
                      +++...-+.++.+|..+....     ..+.+..+...++++|.... +.++....+.++..-+-.+..+++.+++.++++
T Consensus       118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            566677777777777765432     34566778888888886432 267888888888888888899999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          161 IFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       161 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      .+.+.|.. ....+.....|++..+..+++         .....+...|++..|+..+.-..++.+...++.+|..|+-.
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99987766 344577788999999986553         23456777788999999997667899999999999999887


Q ss_pred             CCCCchhhhhchHHHHHHhhccC-ChH---HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC--CCCcchHHHHH
Q 009665          231 KPQPLFEQTRPALPALERLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPAL  304 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~~~-d~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~al  304 (529)
                      ..........|++..|+.++.+. +..   ....++..|..|+-.++ ....+++.|+.+.++.++.  ..+|.+...++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            65555566689999999999863 333   45678888888876654 5577999999999999873  36788999999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009665          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (529)
Q Consensus       305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~  383 (529)
                      .+++-++-..+.....+++.|+-...++.|+ ++....+++.|||++.|++..+.++...++.. +++.|+......++.
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~t  430 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHET  430 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999885 44467899999999999999878877777765 678888888888888


Q ss_pred             HHHHHHHHHHHHhc
Q 009665          384 IKKEAAWAISNATS  397 (529)
Q Consensus       384 v~~~a~~aL~nl~~  397 (529)
                      ....|..+|..+-.
T Consensus       431 ce~~akaALRDLGc  444 (461)
T KOG4199|consen  431 CEAAAKAALRDLGC  444 (461)
T ss_pred             HHHHHHHHHHhcCc
Confidence            88888888887743

>PRK09687 putative lyase; Provisional

Probab=99.68  E-value=8.1e-15  Score=136.26  Aligned_cols=255  Identities=15%  Similarity=0.141  Sum_probs=202.1

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (529)
                      -++.|..+|.+++ ..++..|++.|..+..           ..+++.+..++.++++.+|..++|+|+.+-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4678889999988 8999999999988764           23467788889999999999999999998543211    


Q ss_pred             HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009665          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  274 (529)
Q Consensus       195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~  274 (529)
                        ...+++.|..++..+.++.++..++.+|.+++...+..    ...+++.+...+.++++.|+..++++|+.+...   
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~---  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE---  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH---
Confidence              11246677777558889999999999999997654222    123556677788888999999999999876421   


Q ss_pred             hHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHh
Q 009665          275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  354 (529)
Q Consensus       275 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  354 (529)
                              ..++.|+.+|.++++.++..|+.+||.+..+++         .+++.|+..|.+. ++.||..|+++|+.+-
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    367899999999999999999999999944333         3567799999988 9999999999999864


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHH
Q 009665          355 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLE  433 (529)
Q Consensus       355 ~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~  433 (529)
                      .  +.         .+|.|+..+.+++  ++..|+.+|+++-.   +         ..++.|..+++ .+|+.++..+.+
T Consensus       221 ~--~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~~d~~v~~~a~~  275 (280)
T PRK09687        221 D--KR---------VLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKFDDNEIITKAID  275 (280)
T ss_pred             C--hh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhCCChhHHHHHHH
Confidence            2  32         7899999998765  67889999999854   2         25788888886 789999999988


Q ss_pred             HHHH
Q 009665          434 GLEN  437 (529)
Q Consensus       434 aL~~  437 (529)
                      +|..
T Consensus       276 a~~~  279 (280)
T PRK09687        276 KLKR  279 (280)
T ss_pred             HHhc
Confidence            8763

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=4.7e-13  Score=138.64  Aligned_cols=396  Identities=16%  Similarity=0.178  Sum_probs=271.5

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        72 ~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      .++.|...++ +.|+++|..|+..+|+++..- -+.+..-....+-..|+..+.++..+.+|...+.++..++...-.. 
T Consensus        37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-  114 (1075)
T KOG2171|consen   37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-  114 (1075)
T ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence            4667777776 789999999999999998752 2222222333455566666666555899999999999999844222 


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      .   =.++++.|.+..+++++..|+.|+.+|+++...-.. .+..+..  +.+.+.+.+ .+.+..++..++.++..++.
T Consensus       115 ~---WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~  188 (1075)
T KOG2171|consen  115 K---WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALGAFAE  188 (1075)
T ss_pred             c---hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHHHHHH
Confidence            0   124678888889999999999999999999743322 1111111  233334444 33333499999999988877


Q ss_pred             CCC--CCchhhhhchHHHHHHhh----ccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--CcchHH
Q 009665          230 GKP--QPLFEQTRPALPALERLI----HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLI  301 (529)
Q Consensus       230 ~~~--~~~~~~~~~~l~~L~~ll----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~  301 (529)
                      ..+  ..........+|.++..+    ..+|.+....++.+|..+....+......+. .++...+.+..+.  +..+|.
T Consensus       189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~  267 (1075)
T KOG2171|consen  189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH  267 (1075)
T ss_pred             HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence            653  333344566777666555    4567777888888998888776655444333 3444444444442  455666


Q ss_pred             HHHHHHHHhhcCChh---------------------------------------------hHHHHH-----h-------c
Q 009665          302 PALRTVGNIVTGDDM---------------------------------------------QTQCII-----N-------H  324 (529)
Q Consensus       302 ~al~~L~~l~~~~~~---------------------------------------------~~~~~~-----~-------~  324 (529)
                      .|+.+|..++...+.                                             .....+     +       .
T Consensus       268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p  347 (1075)
T KOG2171|consen  268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP  347 (1075)
T ss_pred             HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence            666666665532100                                             000000     0       1


Q ss_pred             CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHH
Q 009665          325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  404 (529)
Q Consensus       325 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~  404 (529)
                      -+++.+..++.++ ++.-|+++..+|+-++.|+++.+...++. +++.++..|.++++.||-.|+.|++.++..-.++..
T Consensus       348 ~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq  425 (1075)
T KOG2171|consen  348 PLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ  425 (1075)
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence            1355666777888 99999999999999999999988776654 899999999999999999999999999987666655


Q ss_pred             HHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHH
Q 009665          405 KFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE  483 (529)
Q Consensus       405 ~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~  483 (529)
                      ++ ....+++.|+..+++. ++.|...+..++-+++..+.+..       ..+|...+.+.    ++..|..++.+.+++
T Consensus       426 k~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~-------l~pYLd~lm~~----~l~~L~~~~~~~v~e  493 (1075)
T KOG2171|consen  426 KK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI-------LEPYLDGLMEK----KLLLLLQSSKPYVQE  493 (1075)
T ss_pred             HH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHHHHH----HHHHHhcCCchhHHH
Confidence            55 4556788888888864 56899999999999998776543       33455554422    677778888888888


Q ss_pred             HHHHHHH
Q 009665          484 KAVKILE  490 (529)
Q Consensus       484 ~a~~il~  490 (529)
                      .+...|.
T Consensus       494 ~vvtaIa  500 (1075)
T KOG2171|consen  494 QAVTAIA  500 (1075)
T ss_pred             HHHHHHH
Confidence            7766554

>PRK09687 putative lyase; Provisional

Probab=99.64  E-value=4.6e-14  Score=131.21  Aligned_cols=254  Identities=16%  Similarity=0.125  Sum_probs=200.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .++.|+..|.+.+..++..++..|..+-.            ..+++.+..++.+++ +.+|..|+++|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            56789999999999999999999987632            235677888888888 99999999999998752211   


Q ss_pred             HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          152 VVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       152 ~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                         ....++.|..+ +.++++.|+..++.+||+++......     ...++..+...+ .+.+..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11346778876 66789999999999999997443211     111344455556 66688999999999976532 


Q ss_pred             CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                               ...++.|+.++.++++.|+..++.+|+.+....+         .+++.|+..|.+.++.|+..|++.|+.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3588999999999999999999999999843322         4567899999999999999999999996


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-cCChhHHHHHH
Q 009665          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAA  389 (529)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~  389 (529)
                      -.  +         .+++.|+..|.++ +  ++..++.+|+++..  +.         .+|.|..++. .+|..++..|.
T Consensus       220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence            43  2         4688999999887 4  78889999998865  22         7889999997 67999999999


Q ss_pred             HHHHH
Q 009665          390 WAISN  394 (529)
Q Consensus       390 ~aL~n  394 (529)
                      ++|..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            98853

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.64  E-value=3.7e-13  Score=124.66  Aligned_cols=400  Identities=13%  Similarity=0.073  Sum_probs=284.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC---C---ChHHHHHHHHHHHHHhc
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD---D---FPQLQFEAAWALTNIAS  144 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~---~---~~~v~~~a~~~L~~l~~  144 (529)
                      +.++.+.+...|++.++-.+..++|.++...+ ++....+.+.|+-..+++.|+..   +   +.+.-.-+...|.|..-
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            45677777778889999999999999987654 77788888999977777776531   1   24566677789999999


Q ss_pred             CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHHHhccchhHHHHHHHH
Q 009665          145 GTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  221 (529)
Q Consensus       145 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~  221 (529)
                      ++.+.+..+++.|+++.|...+.-  .+....+.++...+|+..- .....+...+......+++++.....+++...++
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999999988754  6677778888777777632 2223455666677778888886666888888888


Q ss_pred             HHHhhhhcCCCCCchhhhhchHHHHHHhhcc-CC-------hHHHHHHHHHHHHhccCCchhHHHHHHhC-cHHHHHHhc
Q 009665          222 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-ND-------DEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL  292 (529)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~L~~lL  292 (529)
                      ..+...+.++.-.......|.+..+..+++. .+       -.....++....-+..+++ ..+.+...+ ++..+...+
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHh
Confidence            9999888887444444456777777777764 21       1233444444444455543 445566555 899999999


Q ss_pred             CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009665          293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG  368 (529)
Q Consensus       293 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  368 (529)
                      .+.+......+.-++||++..++ .+..+++.+++..|+.+|...    .+.+++..++.+|.|++-. ......++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence            99999999999999999999555 555678889999999999542    1567788999999999985 34456788999


Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhccCCCCHH-HHHHHHHHHHHHHHhhhhhh
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEK  446 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~-v~~~~l~aL~~l~~~~~~~~  446 (529)
                      +.+.++..++...|.+...-...+.=+... -+-....|.. ...++.|+..-+++|.. +.....+.+.-+++..... 
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k-  480 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK-  480 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh-
Confidence            999999999999888887777776655442 2212223322 24466777776666644 5555666666666553211 


Q ss_pred             hcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHH
Q 009665          447 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  485 (529)
Q Consensus       447 ~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a  485 (529)
                               .+...+-+.||++.........+-..+..|
T Consensus       481 ---------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEa  510 (604)
T KOG4500|consen  481 ---------DVILTVPKSGGIKEKVSMFTKNHINMQNEA  510 (604)
T ss_pred             ---------hhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence                     124445567888777777666555555554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.61  E-value=4.6e-13  Score=145.50  Aligned_cols=275  Identities=16%  Similarity=0.189  Sum_probs=220.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      ..++.|+..|.++++.+|..|+..|..+..            .+.++.|+..|.+++ +.+|..|+..|..+....+   
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence            357899999999999999999999988632            246889999998888 9999999999988854211   


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                             ..+.|...|.++++.+|..++.+|+.+....            ...++..| .+.++.++..++.+|..+-. 
T Consensus       685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence                   2367788888899999999999999875221            23456677 78899999999999987521 


Q ss_pred             CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                                  .+.|..++.++++.|+..++.+|..+.....         ..++.|..++.++++.++..|+..|+.+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        1346778899999999999999999865432         2367888999999999999999999998


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 009665          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (529)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~  390 (529)
                      ....          .+.+.+...|.++ ++.||..|+++|+.+..  ++         .++.|+.+|.+++..||..|++
T Consensus       803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHH
Confidence            5421          1235688889888 99999999999998743  22         5688999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHH
Q 009665          391 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  436 (529)
Q Consensus       391 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~  436 (529)
                      +|+.+.  +++.         ..+.|...+++.|+.|+..+..+|.
T Consensus       861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            999972  2323         3556778889999999999999886

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=2.4e-13  Score=132.09  Aligned_cols=349  Identities=13%  Similarity=0.156  Sum_probs=237.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009665           76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID  155 (529)
Q Consensus        76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  155 (529)
                      .+..+...++.++...-..+..+++...   .+..  ..++|.|.++|.+++ ....+-|..+|..|+.++++.-+.-+.
T Consensus        95 ~l~~lgd~~~lIr~tvGivITTI~s~~~---~~~w--pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~  168 (885)
T KOG2023|consen   95 CLHGLGDASPLIRATVGIVITTIASTGG---LQHW--PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVL  168 (885)
T ss_pred             HHhhccCchHHHHhhhhheeeeeecccc---cccc--hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcc
Confidence            3444555555555444444555554432   1111  347899999999988 788999999999999976654433211


Q ss_pred             ----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          156 ----HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       156 ----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                          .-.+|.++++.+++++.+|..|+.++..+.-....  ..... -.+++.+..+- .+.++++++++|.++..|..-
T Consensus       169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llev  245 (885)
T KOG2023|consen  169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEV  245 (885)
T ss_pred             cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHh
Confidence                13689999999999999999999999988754432  12111 12445555555 788999999999999999998


Q ss_pred             CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH--hCcHHHHHHhcCCCC------------
Q 009665          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPS------------  296 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~lL~~~~------------  296 (529)
                      .+........+++..+++..++.|++|...||.....++..+. ....+..  ..++|.|+.-+...+            
T Consensus       246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD  324 (885)
T KOG2023|consen  246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED  324 (885)
T ss_pred             cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence            8888788889999999999999999999999999999998763 2222221  155666655432110            


Q ss_pred             --------------------------------------------cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH
Q 009665          297 --------------------------------------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD  332 (529)
Q Consensus       297 --------------------------------------------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  332 (529)
                                                                  +.+|..++.+|.-++.-..   +.++. -++|.|..
T Consensus       325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~  400 (885)
T KOG2023|consen  325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKE  400 (885)
T ss_pred             ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHH
Confidence                                                        2344443333333332111   11222 34566666


Q ss_pred             HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHH-HHHHHHHcC
Q 009665          333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQG  411 (529)
Q Consensus       333 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~  411 (529)
                      .|.++ .+.+|+.++.+++.++.|.-...-.-+. .++|.|+.+|.++.+-||.-+||+|+..+...-.+ ..+++.  .
T Consensus       401 ~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--p  476 (885)
T KOG2023|consen  401 HLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--P  476 (885)
T ss_pred             HcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--H
Confidence            77777 8999999999999999874433222121 37899999999999999999999999987643211 113322  1


Q ss_pred             ChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      ++..|+..+-+++.+|+++++.++..+-+..
T Consensus       477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence            4455555555789999999999998776543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.59  E-value=3.3e-12  Score=124.69  Aligned_cols=406  Identities=16%  Similarity=0.109  Sum_probs=269.4

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV  153 (529)
Q Consensus        75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~  153 (529)
                      .++..+...+++....|..-..+++.+. +++...++..|.++.|..+++..+ .++.+.+.+.++...+.+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            3444556778888888888888887764 555557899999999999998665 26777777778888888888888899


Q ss_pred             HhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          154 IDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       154 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      .+.+.++.|+++|.+++ ..+++.++.++.++...++..-  .......++..+..++ ..........-+...+++|..
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~  170 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST  170 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence            99999999999999988 8999999999999986654221  1122222344443333 223334445555556666665


Q ss_pred             CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHH---HhccCCchhHH----HHHHhCcHH--HHHHhcCCCCcchHH
Q 009665          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS---YLSDGTNDKIQ----AVIEAGVCP--RLVELLRHPSPSVLI  301 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~---~l~~~~~~~~~----~~~~~~~~~--~L~~lL~~~~~~v~~  301 (529)
                      ..........++...+.-++......++..++.+++   .+..+++....    ...+.|+.+  .+..++.+++...+.
T Consensus       171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l  250 (678)
T KOG1293|consen  171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL  250 (678)
T ss_pred             chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence            544444455677777777776677889999999999   66655443322    233445555  345556666666666


Q ss_pred             HHHHHHHHhhcCCh-------------h----hHH----------------------------------HHHhcCChHHH
Q 009665          302 PALRTVGNIVTGDD-------------M----QTQ----------------------------------CIINHQALPCL  330 (529)
Q Consensus       302 ~al~~L~~l~~~~~-------------~----~~~----------------------------------~~~~~~~l~~L  330 (529)
                      .++.++-++..++-             -    ..+                                  ...+...++.+
T Consensus       251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~  330 (678)
T KOG1293|consen  251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT  330 (678)
T ss_pred             HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence            66666666554320             0    000                                  00000111111


Q ss_pred             HHHh----------------------------------------------------ccCCchhHHHHHHHHHHHHhcCCH
Q 009665          331 LDLL----------------------------------------------------TQNYKKSIKKEACWTISNITAGNV  358 (529)
Q Consensus       331 ~~lL----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~~  358 (529)
                      ..++                                                    ... +...+.+||.++-++++.-.
T Consensus       331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~  409 (678)
T KOG1293|consen  331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVS  409 (678)
T ss_pred             HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHH
Confidence            1111                                                    111 33445555555555554211


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHH
Q 009665          359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  438 (529)
Q Consensus       359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l  438 (529)
                      .....+-...+...|+.++..++..|+..+..+|+|+...-+ .....++..|+++.+.+++.+.++.++..++|+|+++
T Consensus       410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l  488 (678)
T KOG1293|consen  410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL  488 (678)
T ss_pred             HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            111112235678899999999999999999999999987544 4556778999999999999999999999999999999


Q ss_pred             HHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          439 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      +-.++...           ...+-.-=+...|..+.++++..|++.+.+++.++...
T Consensus       489 ~f~~de~~-----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  489 MFNCDEEE-----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HhcchHHH-----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            75443321           11111122356688899999999999999999998776

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.59  E-value=5.4e-13  Score=121.13  Aligned_cols=238  Identities=18%  Similarity=0.222  Sum_probs=184.6

Q ss_pred             hhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh
Q 009665          239 TRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  317 (529)
Q Consensus       239 ~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~  317 (529)
                      ..+-+..|+.+|+ +.|+.++..++.++++.+..+. ....+.+.|+++.+..+|.++++.++..|+.+|.|++...+.+
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            3567788999998 5689999999999999877654 4577888899999999999999999999999999998865543


Q ss_pred             HHHHHhcCChHHHHHH-hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665          318 TQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (529)
Q Consensus       318 ~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (529)
                      .  .++. .++.+... +.++-+..++..+..+|.|++..+ +. +.++. +.++.++.+|..++..+|..++++|.|++
T Consensus        89 ~--~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   89 E--QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             H--HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3  2343 35555554 444446789999999999998753 22 33342 37999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhhhhhhhc--CCCCccchHHHHHHhhc-hHHHHHH
Q 009665          397 SGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNM--GNTGGVNLFAQAIDDAE-GLEKIEN  472 (529)
Q Consensus       397 ~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~g-~~~~l~~  472 (529)
                      .  ++...+.++..+++..|+.+++.. +.++...++..+.||...-.+....  ...........+|.+.+ .-++|..
T Consensus       163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            8  668889999999999999999875 6788899999999995443322110  01112344456676665 7889999


Q ss_pred             HhcCCCHHHHHHH
Q 009665          473 LQSHDNTEIYEKA  485 (529)
Q Consensus       473 L~~~~~~~v~~~a  485 (529)
                      |..|+++||+.+.
T Consensus       241 l~~h~d~ev~~~v  253 (254)
T PF04826_consen  241 LANHPDPEVKEQV  253 (254)
T ss_pred             HHcCCCHHHhhhc
Confidence            9999999999764

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.55  E-value=2.6e-12  Score=125.43  Aligned_cols=371  Identities=15%  Similarity=0.124  Sum_probs=250.0

Q ss_pred             hhhccHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 009665           68 KKLESLPAMVAGVWSDD--RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG  145 (529)
Q Consensus        68 ~~~~~l~~l~~~L~s~~--~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~  145 (529)
                      -+.|.++.+...++..+  .+.+.+.+..+.....++ ......+.+.+.++.|+.+|.+.+...++...++++..+...
T Consensus        48 ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet  126 (678)
T KOG1293|consen   48 IKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFET  126 (678)
T ss_pred             hhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhc
Confidence            35688999999888555  455556677777777765 677888999999999999999887567899999999999985


Q ss_pred             ChhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHH
Q 009665          146 TSENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT  223 (529)
Q Consensus       146 ~~~~~~~~~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  223 (529)
                      ++..-....  ...+++.+..++..+...+...-+....++++.. ..+-.+...|+.+.+.-++ ...+...+..+..+
T Consensus       127 ~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~  204 (678)
T KOG1293|consen  127 SKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLC  204 (678)
T ss_pred             ccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHH
Confidence            543333322  2345555555555344555555555556655544 4566666777666655555 55577788888888


Q ss_pred             Hh---hhhcCCCCCchhhh-----hchHH--HHHHhhccCChHHHHHHHHHHHHhccCCchh----------------H-
Q 009665          224 LS---NFCRGKPQPLFEQT-----RPALP--ALERLIHSNDDEVLTDACWALSYLSDGTNDK----------------I-  276 (529)
Q Consensus       224 L~---~l~~~~~~~~~~~~-----~~~l~--~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~----------------~-  276 (529)
                      ++   ++..+++.......     .++.+  .+.+++++++..-+..++.++.++...+.+.                + 
T Consensus       205 ~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~  284 (678)
T KOG1293|consen  205 LSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIV  284 (678)
T ss_pred             hhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHH
Confidence            88   66666544433222     34444  3445666666666666666666554322000                0 


Q ss_pred             HH----------------------------------HHHhCcHHHHHHhc------------------------------
Q 009665          277 QA----------------------------------VIEAGVCPRLVELL------------------------------  292 (529)
Q Consensus       277 ~~----------------------------------~~~~~~~~~L~~lL------------------------------  292 (529)
                      +.                                  ..+....+.+.+++                              
T Consensus       285 q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~  364 (678)
T KOG1293|consen  285 QYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYG  364 (678)
T ss_pred             HHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhh
Confidence            00                                  00011111111111                              


Q ss_pred             ----------------------CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665          293 ----------------------RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (529)
Q Consensus       293 ----------------------~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  350 (529)
                                            ...+..++..|+.++-+++..-......+-...+...+++++..+ +..|...+..+|
T Consensus       365 ~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai  443 (678)
T KOG1293|consen  365 LEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAI  443 (678)
T ss_pred             cchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHH
Confidence                                  112233455555555555543332222233457889999999888 889999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHH
Q 009665          351 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV  430 (529)
Q Consensus       351 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~  430 (529)
                      +|+.-........++..|++..+..++.+.++.++..+.|+|.++..+++......+...=....+..+..++++.|++.
T Consensus       444 ~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq  523 (678)
T KOG1293|consen  444 CNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQ  523 (678)
T ss_pred             HHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHH
Confidence            99998666677889999999999999999999999999999999999887666555555444566777888999999999


Q ss_pred             HHHHHHHHHHhh
Q 009665          431 CLEGLENILKAG  442 (529)
Q Consensus       431 ~l~aL~~l~~~~  442 (529)
                      ++..|.|+....
T Consensus       524 ~fqllRNl~c~~  535 (678)
T KOG1293|consen  524 CFQLLRNLTCNS  535 (678)
T ss_pred             HHHHHHHhhcCc
Confidence            999999998663

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.54  E-value=3.2e-12  Score=139.03  Aligned_cols=278  Identities=16%  Similarity=0.200  Sum_probs=219.3

Q ss_pred             hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009665          112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  191 (529)
Q Consensus       112 ~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  191 (529)
                      ..+.++.|+..|.+++ +.+|..|+..|..+..           .+.++.|...|.+++..+|..|+.+|+.+....+  
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence            4457789999999998 9999999999998753           2467899999999999999999999998853221  


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~  271 (529)
                              ..+.+...| .+.++.++..++.+|..+....           ...++..|.++|+.|+..++.+|..+.. 
T Consensus       685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence                    124566777 6688899999999888764221           2356788999999999999999997621 


Q ss_pred             CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                                   .+.|..++.++++.|+..++.+|+.+.....         ..++.|..+++++ ++.+|..|+.+|+
T Consensus       744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg  800 (897)
T PRK13800        744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA  800 (897)
T ss_pred             -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence                         1346678999999999999999999865322         2367888999998 8999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHH
Q 009665          352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  431 (529)
Q Consensus       352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~  431 (529)
                      .+... +.         .++.++..|.++++.||..|+++|..+-.            ...++.|..+|+++++.|+..+
T Consensus       801 ~~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A  858 (897)
T PRK13800        801 ELGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAA  858 (897)
T ss_pred             hcCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHH
Confidence            98653 11         33567888999999999999999998742            1256889999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009665          432 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  491 (529)
Q Consensus       432 l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~  491 (529)
                      ..+|..+ . +.                    ....+.|.....+++.+|+..|...|+.
T Consensus       859 ~~aL~~~-~-~~--------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        859 VLALTRW-P-GD--------------------PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHhcc-C-CC--------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999975 1 11                    1124567778889999999999988763

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=2.1e-12  Score=117.25  Aligned_cols=196  Identities=19%  Similarity=0.240  Sum_probs=163.1

Q ss_pred             hhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009665          111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  190 (529)
Q Consensus       111 i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  190 (529)
                      .+.+-+..|+.+|+...+|.++..++.++++.+. .+..+..+.+.|+++.+..+|..+++.+++.|++++.|++...+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            5667789999999976659999999999999887 78889999999999999999999999999999999999997765 


Q ss_pred             hHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009665          191 CRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (529)
Q Consensus       191 ~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~  269 (529)
                      .+..+-.  .++.++..+... -+..++..++.+|.+|+.....  ...+...+|.++.+|.+++..++..++++|.+|+
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3444432  466666655333 4778889999999999876433  2334568999999999999999999999999999


Q ss_pred             cCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHHHHHHHhhcC
Q 009665          270 DGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~  313 (529)
                      .++. ....++..+++..++.++... +.++...++..+.|+..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            8875 456788889999999999775 677899999999999654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.51  E-value=1.6e-12  Score=135.18  Aligned_cols=361  Identities=17%  Similarity=0.216  Sum_probs=246.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+..+.+.|.++++.++..|++.+.++..       .++++ .+++.+.+++.+++ +.+|..|+.++..+...+|+...
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-------~~~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRT-------PEMAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-------HHHHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-------cchhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence            56677778889999999999999998752       12222 36788899999988 99999999999999986665432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhh
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~  228 (529)
                         .. .++.+..++.++++.++..|+.++..+ ..++....     ..++.++..|.   ...++-.+..++.++..++
T Consensus       151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence               22 579999999889999999999999999 22221100     23444444442   5567788888888888877


Q ss_pred             cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009665          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~  308 (529)
                      ...+....  ...+++.+..++++.++.|...++.++..+.....      .-..+++.|..++.++++.++..++.+|.
T Consensus       221 ~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  221 PMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS  292 (526)
T ss_dssp             SSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             cCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence            65421110  05678888888888899999999999998876543      22367889999999888899999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-cCChhHHH
Q 009665          309 NIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKK  386 (529)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~  386 (529)
                      .++.....    .+.  .....+..+. ++ +..+|..++.+|..++.  +.+...     +++.|...+. .++++++.
T Consensus       293 ~l~~~~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~  358 (526)
T PF01602_consen  293 QLAQSNPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRR  358 (526)
T ss_dssp             HHCCHCHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHH
T ss_pred             Hhhcccch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhh
Confidence            99886521    222  2233344554 55 88999999999999985  344333     5667888884 44888999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhch
Q 009665          387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG  466 (529)
Q Consensus       387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~  466 (529)
                      .++.+++.++....+ ....     +++.+++++......+...+...+.+++...+..+           ...      
T Consensus       359 ~~i~~I~~la~~~~~-~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----------~~~------  415 (526)
T PF01602_consen  359 ELIKAIGDLAEKFPP-DAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----------EKI------  415 (526)
T ss_dssp             HHHHHHHHHHHHHGS-SHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----------HHH------
T ss_pred             hHHHHHHHHHhccCc-hHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----------HHH------
Confidence            999999998864221 1111     35667777776666666666677777765543221           111      


Q ss_pred             HHHHH-HHhcCCCHHHHHHHHHHHHhhCCCC
Q 009665          467 LEKIE-NLQSHDNTEIYEKAVKILETYWVEE  496 (529)
Q Consensus       467 ~~~l~-~L~~~~~~~v~~~a~~il~~~~~~~  496 (529)
                      +..+. .+..-.++++...+.|++.+|-+..
T Consensus       416 l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~  446 (526)
T PF01602_consen  416 LKKLIELLEDISSPEALAAAIWILGEYGELI  446 (526)
T ss_dssp             HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence            22222 2234566777777788888776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.50  E-value=1.6e-12  Score=135.83  Aligned_cols=362  Identities=19%  Similarity=0.197  Sum_probs=266.5

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCCchhHHH
Q 009665          118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP---TDDVREQAVWALGNVAGDSPKCRDL  194 (529)
Q Consensus       118 ~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~~  194 (529)
                      .|..++...+    +.+.++-+..++. +++....+...|.++.|+++|..+   +.+.+..|-.+|.||....++....
T Consensus       201 sllsml~t~D----~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~  275 (2195)
T KOG2122|consen  201 SLLSMLGTDD----EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG  275 (2195)
T ss_pred             HHhhhcccCC----HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence            4555555555    5666777888887 778888888999999999999763   5688899999999999766543222


Q ss_pred             HHhcCChHHHH---HHh-------c-cc------hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc-----
Q 009665          195 VLSNGALMPLL---AQF-------N-EH------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----  252 (529)
Q Consensus       195 ~~~~~~i~~l~---~~l-------~-~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----  252 (529)
                      -.+..++..|-   ...       . ..      .+..-+..|+.+|..++.+......+..-|++..+..++.-     
T Consensus       276 RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mh  355 (2195)
T KOG2122|consen  276 RREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMH  355 (2195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            11212222221   111       0 00      11122234455555555555555555667788877777651     


Q ss_pred             ----C---ChHHHHHHHHHHHHhccCCchhHHHHHH-hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH-h
Q 009665          253 ----N---DDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-N  323 (529)
Q Consensus       253 ----~---d~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~  323 (529)
                          +   ...++.++..+|.||+.++..+...++. .|++..++..|.+..+++..-...+|.||.=..+.....++ +
T Consensus       356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE  435 (2195)
T KOG2122|consen  356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE  435 (2195)
T ss_pred             CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh
Confidence                1   2458999999999999877665555554 49999999999998888888888999999877676666665 5


Q ss_pred             cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcC----ChhHHHHHHHHHHHHhcC
Q 009665          324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA----EFEIKKEAAWAISNATSG  398 (529)
Q Consensus       324 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~----~~~v~~~a~~aL~nl~~~  398 (529)
                      .|-+..|...--........+..+.+|.||++++.++...+.. .|.+..|+.+|...    ...+.+.|-.+|.|+...
T Consensus       436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~  515 (2195)
T KOG2122|consen  436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL  515 (2195)
T ss_pred             hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence            6777777766544435567788899999999988888777774 68899999999865    446778888888887653


Q ss_pred             C--CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC
Q 009665          399 G--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH  476 (529)
Q Consensus       399 ~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~  476 (529)
                      .  ..++.+.|.+..++..|++.|++..--++.++|++|.||.-.+...            .++|-+.|.+.-|.+|.++
T Consensus       516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D------------Qq~LwD~gAv~mLrnLIhS  583 (2195)
T KOG2122|consen  516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED------------QQMLWDDGAVPMLRNLIHS  583 (2195)
T ss_pred             hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH------------HHHHHhcccHHHHHHHHhh
Confidence            2  3467788889999999999999999999999999999998777654            5678889999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCC
Q 009665          477 DNTEIYEKAVKILETYWVEE  496 (529)
Q Consensus       477 ~~~~v~~~a~~il~~~~~~~  496 (529)
                      .+..+..-+...|.++....
T Consensus       584 KhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  584 KHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhhHHHHHHHHhcCC
Confidence            99999988888888877654

>PTZ00429 beta-adaptin; Provisional

Probab=99.50  E-value=3.1e-10  Score=118.31  Aligned_cols=371  Identities=13%  Similarity=0.125  Sum_probs=242.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .++.+++.+.++|..++......+...+...  + -..+.   .++.|.+-+.+++ |.+|..|++.|++|-.  ++...
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--p-elalL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e  139 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--P-EKALL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE  139 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--h-HHHHH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence            6788999999999999999988888876432  2 11111   4678888888888 9999999999998876  44444


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      .+     ++.+.+.+.+.++-||..|+.++..+...+++   .+...+.++.+..+| .+.++.+..+|+.+|..++...
T Consensus       140 ~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        140 YT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             HH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence            33     47788889999999999999999999876553   445567788888888 7889999999999999998765


Q ss_pred             CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009665          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (529)
Q Consensus       232 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~  311 (529)
                      +. ........+..++..+..-++..+..++.+|.......+...     ..++..+...|.+.++.|...|++++.++.
T Consensus       211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            43 234456666777777777788888888888866443222211     256788888899999999999999999887


Q ss_pred             cCC-hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-------------------------
Q 009665          312 TGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-------------------------  365 (529)
Q Consensus       312 ~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-------------------------  365 (529)
                      ... +.....+.. .+-+.++.++ ++ +++++..++..|.-++...|.....-+                         
T Consensus       285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La  361 (746)
T PTZ00429        285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV  361 (746)
T ss_pred             CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence            642 222222211 1224444443 33 566776666666555543332211100                         


Q ss_pred             H----cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          366 E----AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       366 ~----~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      +    ..++..|.....+.+.+++..++.++++++..-. ...     ..++..|+++++.... ++..++.++.+++..
T Consensus       362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a-----~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk  434 (746)
T PTZ00429        362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVA-----PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK  434 (746)
T ss_pred             CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHH-----HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence            0    0123344444445566777777777777765422 221     2356677777764333 334456666666654


Q ss_pred             hhhhhhcCCCCccchHHHHHHhhchHHHHHH-H--hcCCCHHHHHHHHHHHHhhCCC
Q 009665          442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN-L--QSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~-L--~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      .+.             ..      .+..|.. +  ..-.+++.+....|||..|-+.
T Consensus       435 yP~-------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~  472 (746)
T PTZ00429        435 YPE-------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF  472 (746)
T ss_pred             Ccc-------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence            321             00      1222221 1  2335677777779999988553

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=1.7e-11  Score=121.50  Aligned_cols=360  Identities=15%  Similarity=0.114  Sum_probs=238.5

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009665           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  154 (529)
Q Consensus        75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  154 (529)
                      .++..|.+..|...-.|..++..++..+ -| ...  -.++++.|+.....+....++..++.+|+.++.+-....-.-.
T Consensus        94 ~il~tL~~~ep~~~s~Aaq~va~IA~~E-lP-~n~--wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~  169 (859)
T KOG1241|consen   94 NILRTLGSPEPRRPSSAAQCVAAIACIE-LP-QNQ--WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ  169 (859)
T ss_pred             HHHHHcCCCCCCccchHHHHHHHHHHhh-Cc-hhh--CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            3455677778888888889998888765 11 111  1234445555555555235899999999999985322211111


Q ss_pred             hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009665          155 DHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       155 ~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  232 (529)
                      .+.++..+++..+.  ++..+|-.|+.+|.|-.......-..-.+.+.+...+--..++++.+++..++.||..+..-..
T Consensus       170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY  249 (859)
T KOG1241|consen  170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY  249 (859)
T ss_pred             HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence            24567777887766  6789999999999886533221111122334443333333377899999999999998876542


Q ss_pred             CCchhhh-hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhH---------------HHHHH---hCcHHHHHHhcC
Q 009665          233 QPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI---------------QAVIE---AGVCPRLVELLR  293 (529)
Q Consensus       233 ~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~---------------~~~~~---~~~~~~L~~lL~  293 (529)
                      .....+. ...++.-+..+.+++++|...++...+++|+...+..               ..+..   .+++|.|+++|.
T Consensus       250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~  329 (859)
T KOG1241|consen  250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT  329 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence            2222233 3466666777789999999999999999886422210               11111   267888888885


Q ss_pred             C-------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009665          294 H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  366 (529)
Q Consensus       294 ~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  366 (529)
                      .       +++.....|--||.-++......   ++. .++|++-.-++++ +++-|..|+.+++.+..+.......-+-
T Consensus       330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV  404 (859)
T KOG1241|consen  330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV  404 (859)
T ss_pred             hCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence            4       24567777777777766533221   222 5677777777888 9999999999999999974444444444


Q ss_pred             cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009665          367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  444 (529)
Q Consensus       367 ~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~  444 (529)
                      .+.+|.++.++.++...++..+.|+++.++................+..++.-|. ..|.+..+++|++.++.+...+
T Consensus       405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~e  481 (859)
T KOG1241|consen  405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYE  481 (859)
T ss_pred             hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHH
Confidence            5699999999998888999999999999998653222222222334555555444 5788999999999999976544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.49  E-value=9.7e-12  Score=129.25  Aligned_cols=329  Identities=18%  Similarity=0.210  Sum_probs=246.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      ..++.+++.+.+++...+.-+-.++..+....  +..-.+    +++.+.+-|.+++ +.++..|+++|+++..  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            47889999999999999999888888877543  221111    5677888888888 9999999999999995  6655


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ..+     ++.+.+++.++++.||..|+.++..+....|+.   +... .++.+..++ .+.++.+...|+.++..+ ..
T Consensus       113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            544     588999999999999999999999998665542   2222 578888888 788899999999999998 22


Q ss_pred             CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                      .+..........++.|.+++...++.++..++..+..++.........   ..+++.+..++.+.++.+...|+.++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            211111445666777777778899999999999999998766544311   36788888888888899999999999988


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-cCChhHHHHHH
Q 009665          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAA  389 (529)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~  389 (529)
                      .....      .-..+++.+..++.++ ++.+|..++.+|..++...+....      .....+..+. +++..+|..++
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~------~~~~~~~~l~~~~d~~Ir~~~l  325 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF------NQSLILFFLLYDDDPSIRKKAL  325 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG------THHHHHHHHHCSSSHHHHHHHH
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh------hhhhhhheecCCCChhHHHHHH
Confidence            76433      2225788899999987 899999999999999987534332      2222333455 77899999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHcCChHHHHhcc-CCCCHHHHHHHHHHHHHHHHhhh
Q 009665          390 WAISNATSGGSNEQIKFLVSQGCIKPLCDLL-NCPDPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       390 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-~~~~~~v~~~~l~aL~~l~~~~~  443 (529)
                      ..|.+++..   .....     +++.|...+ ...+++++..++..|..+.....
T Consensus       326 ~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~  372 (526)
T PF01602_consen  326 DLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFP  372 (526)
T ss_dssp             HHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence            999999853   44444     466777777 45688899999999998876654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.47  E-value=1.3e-12  Score=106.69  Aligned_cols=119  Identities=35%  Similarity=0.621  Sum_probs=110.2

Q ss_pred             HHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009665          109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS  188 (529)
Q Consensus       109 ~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  188 (529)
                      .+++.|+++.|++++.+++ +.++..++++|.+++..+++....+++.|+++.++.++.++++.++..++|+|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4568899999999999988 999999999999999988999999999999999999999999999999999999999988


Q ss_pred             chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       189 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      +..+..+...|+++.++..+ .+.+..++..++|+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77788888999999999999 66688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.45  E-value=2.2e-12  Score=105.27  Aligned_cols=118  Identities=34%  Similarity=0.507  Sum_probs=110.1

Q ss_pred             HHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Q 009665          279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  358 (529)
Q Consensus       279 ~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  358 (529)
                      +++.|+++.+++++.++++.++..++++|++++...+.....+++.++++.+..+|.++ ++.++..++|+|+|++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998888888888999999999999998 99999999999999999877


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                      .....+.+.|+++.++.++.+++.+++..++|+|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            777888899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PTZ00429 beta-adaptin; Provisional

Probab=99.41  E-value=2.1e-09  Score=112.14  Aligned_cols=294  Identities=15%  Similarity=0.102  Sum_probs=208.4

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      |.+..+.+.|++.+...+..+++.+......+ .+.      ..+++.+++++.+++ ..++.-..-.+.+++...++..
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            34567788888888888888888776665443 111      235677888998888 8999999989999988666643


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      -.     +++.|.+=+.++++.+|..|++++++|-..  ..-+.     .+.++.+.+ .+.++-+++.|+.++..+...
T Consensus       104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence            22     367888888899999999999999998532  22222     355667777 778999999999999999876


Q ss_pred             CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                      .|.  .....+.++.|..+|.+.|+.|..+|+.+|..+....+....  ...+.+..++..+..-++..+...+.+|...
T Consensus       171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            542  223456788899999999999999999999999866544332  2335677788888776777777788887654


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHH
Q 009665          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  389 (529)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~  389 (529)
                      .-.++...     ..++..+...|++. ++.|.-+|+.++.++... +++....+.. .+.+.++.+ .+++++++-.++
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL  318 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC  318 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence            32222211     24677788888888 899999999999988764 2343333322 133445555 345667777777


Q ss_pred             HHHHHHhc
Q 009665          390 WAISNATS  397 (529)
Q Consensus       390 ~aL~nl~~  397 (529)
                      ..|.-++.
T Consensus       319 r~I~~i~~  326 (746)
T PTZ00429        319 KNIHALLV  326 (746)
T ss_pred             HHHHHHHH
Confidence            66655554

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.40  E-value=5.3e-10  Score=108.26  Aligned_cols=323  Identities=14%  Similarity=0.174  Sum_probs=229.4

Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhc-----CChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          157 GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       157 g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ..+..++.++.. ...++.+.++..+.-+..+.+.....+.+.     ....+++.+| ...+.-+...++..++.+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            345667777766 668888888988998888777655555553     4677888888 566888889999999988776


Q ss_pred             CCCCch-hhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--CcchHHHHHHH
Q 009665          231 KPQPLF-EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT  306 (529)
Q Consensus       231 ~~~~~~-~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~al~~  306 (529)
                      .+.... ......++.+...+.+. +...+.-++.++..+...+..+ ..+.+.++++.|+.+|+..  +..+...++.|
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            532211 12223445666666654 4667777888999988876544 5677888999999999763  34678889999


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHcCCHHHHHHHHhcC
Q 009665          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------VNQIQAIIEAGIIGPLVNLLLNA  380 (529)
Q Consensus       307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~l~~L~~~l~~~  380 (529)
                      ++-++...+ ........++++.+..+++.....++-+-++.++.|+...+      ......+++.|+.+.+-.+...+
T Consensus       211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK  289 (429)
T ss_pred             HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence            999987544 44555677999999999988767889999999999999842      22344566776666444444333


Q ss_pred             --ChhHHHHHHHHHH-------HHhc------------------CC----CHHHHHHHHHcC--ChHHHHhccC-CCCHH
Q 009665          381 --EFEIKKEAAWAIS-------NATS------------------GG----SNEQIKFLVSQG--CIKPLCDLLN-CPDPR  426 (529)
Q Consensus       381 --~~~v~~~a~~aL~-------nl~~------------------~~----~~~~~~~l~~~~--~l~~L~~lL~-~~~~~  426 (529)
                        |+++....-..-.       .+++                  +.    -.++...|.+++  ++..|+.+|+ +.|+.
T Consensus       290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~  369 (429)
T cd00256         290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI  369 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence              6665433222211       1110                  00    124455555554  3788999995 56788


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       427 v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      +...||.=|+.+++..+.            ....+++.|+-+.+-.|+.|+|++|+..|...++++..
T Consensus       370 ~laVAc~Dige~vr~~P~------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         370 ILAVACHDIGEYVRHYPR------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             eeehhhhhHHHHHHHCcc------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            888889889988877643            26778899999999999999999999999999988753

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.38  E-value=1.3e-13  Score=105.18  Aligned_cols=88  Identities=45%  Similarity=0.612  Sum_probs=60.3

Q ss_pred             CCccHHHhhhccC-CCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCCCc----cchhhh-hhhhhccHHHHHHh
Q 009665            6 NARTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPL----TNSAAL-DNKKLESLPAMVAG   79 (529)
Q Consensus         6 ~~~~~~~~~~~k~-~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~----~~~~~~-~~~~~~~l~~l~~~   79 (529)
                      +...+.|++.||+ |+|++|+|+||++..|+|||+||++.|.|||+.........    ...... .......+|.++..
T Consensus         3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~   82 (97)
T PF01749_consen    3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG   82 (97)
T ss_dssp             ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred             ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence            3467899999999 58999999999999999999999999999999865443311    001111 11223468899999


Q ss_pred             hcCCCHHHHHHHHH
Q 009665           80 VWSDDRNIQLDATT   93 (529)
Q Consensus        80 L~s~~~~~~~~a~~   93 (529)
                      +.|+|+..|+.|..
T Consensus        83 v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   83 VNSDDPEVQLEATQ   96 (97)
T ss_dssp             HTSSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHhhC
Confidence            99999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.34  E-value=1.5e-09  Score=105.22  Aligned_cols=321  Identities=12%  Similarity=0.075  Sum_probs=222.5

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhh-----cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 009665           72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQ-----SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG  145 (529)
Q Consensus        72 ~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~-----~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~  145 (529)
                      ....++..++ ....++....+..+..++... +.....+.+     ......++.+|..++ .-+...|+.+|+.+...
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            3456666666 456777778888888888653 333444443     346677888998877 88999999999999875


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch-hHHHHHHHHHH
Q 009665          146 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWT  223 (529)
Q Consensus       146 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~  223 (529)
                      .+.........-.++.|...+.+ .+...+..|+.++..+....+ +|..+.+.++++.|+.+|.... +.+++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            44321111111133455556655 347788888999999987654 7999989999999999996544 77899999999


Q ss_pred             HhhhhcCCCCCchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCc------hhHHHHHHhCcHHHHHHhcCC--
Q 009665          224 LSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRH--  294 (529)
Q Consensus       224 L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~~~~L~~lL~~--  294 (529)
                      ++-|+...+........++++.++.+++.. .+.|..-++.++.|+.....      .....+++.|+.+ ++..|..  
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK  289 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence            999988864333344478999999999854 68899999999999987431      2334566666655 4444433  


Q ss_pred             -CCcchHHHHHHHHHHh--------hcC--------------Ch---------hhHHHHH--hcCChHHHHHHhccCCch
Q 009665          295 -PSPSVLIPALRTVGNI--------VTG--------------DD---------MQTQCII--NHQALPCLLDLLTQNYKK  340 (529)
Q Consensus       295 -~~~~v~~~al~~L~~l--------~~~--------------~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~  340 (529)
                       .++++.. .+..|...        ++.              ++         +....+-  +..++..|..+|..+.++
T Consensus       290 ~~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         290 YDDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence             2333322 12222111        110              11         1111121  224577888898654478


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       341 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                      .+..-||.=|+.+++..|..+..+-+.|+=..++.+|.++|++||.+|+.|+..+..
T Consensus       369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            888999999999999878877777788999999999999999999999999988764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.5e-09  Score=109.06  Aligned_cols=342  Identities=15%  Similarity=0.168  Sum_probs=245.0

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        72 ~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      .+|.|+..|+ ..+.+++..|++++..++..- +.....+++.+.||.|++-|..-...++.++++.+|-.|+..   .-
T Consensus       212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~  287 (1051)
T KOG0168|consen  212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HP  287 (1051)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---cc
Confidence            4788888888 457999999999999998653 455677889999999998777655589999999999999983   44


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      ..++++|++...+.+|.--+..++..|+.+..|+|..- ++--..+++  ++|.|..+| ...+.....+++-++..++.
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD  364 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence            57889999999999998888999999999999999422 111234444  788888888 77788888999999998887


Q ss_pred             CC-CCCch---hhhhchHHHHHHhhccCC----hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCc----
Q 009665          230 GK-PQPLF---EQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP----  297 (529)
Q Consensus       230 ~~-~~~~~---~~~~~~l~~L~~ll~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~----  297 (529)
                      .. +.+..   ....+++.-..+++...+    ..+-...++.+..++.+.+.....+.+.++...|..+|.....    
T Consensus       365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na  444 (1051)
T KOG0168|consen  365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA  444 (1051)
T ss_pred             hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence            75 22222   233677777777777543    3455667777888887766666667777777777777643110    


Q ss_pred             c----h-H------HHH---------------------------------------------------HHHHHHh-----
Q 009665          298 S----V-L------IPA---------------------------------------------------LRTVGNI-----  310 (529)
Q Consensus       298 ~----v-~------~~a---------------------------------------------------l~~L~~l-----  310 (529)
                      .    + +      ...                                                   .+++..+     
T Consensus       445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~  524 (1051)
T KOG0168|consen  445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG  524 (1051)
T ss_pred             ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence            0    0 0      000                                                   0111100     


Q ss_pred             --------hc---------CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCCHH
Q 009665          311 --------VT---------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIE-AGIIG  371 (529)
Q Consensus       311 --------~~---------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~l~  371 (529)
                              ..         ..++..+.++. .++|.|+++..+.-++.||..+..+|..+.. .+++.+..++. .++-.
T Consensus       525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS  603 (1051)
T KOG0168|consen  525 TSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS  603 (1051)
T ss_pred             cchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence                    00         01112222222 4688888988877689999999999999887 56888888875 44555


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009665          372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  421 (529)
Q Consensus       372 ~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  421 (529)
                      .+-.+|.+.+..|..-|+...--++..-..-+...+.+.|++..+-+|..
T Consensus       604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            66667888888888777777777776655567788889999888887776

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1.5e-09  Score=107.87  Aligned_cols=361  Identities=14%  Similarity=0.155  Sum_probs=240.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+|.+-+.++++|...+..|+.++..++.+. ++....-+-.+++|.++.++.++. --++..++|+|+.++...++.+.
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~  442 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAII  442 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhcc
Confidence            3566666889999999999999999999764 344444455679999999999777 78899999999999997775543


Q ss_pred             HH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH-----HHHHhcCChHHHHHHhc------cchhHHHHHH
Q 009665          152 VV-IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFN------EHAKLSMLRN  219 (529)
Q Consensus       152 ~~-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-----~~~~~~~~i~~l~~~l~------~~~~~~~~~~  219 (529)
                      .. .-.+.++.++.-|.+ .+.+..+++|++.+++....+..     ..... ...+.++.-|.      +..+..++..
T Consensus       443 n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A  520 (859)
T KOG1241|consen  443 NQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA  520 (859)
T ss_pred             cHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence            22 223555666666654 68899999999999983211100     00000 12333443332      2245678888


Q ss_pred             HHHHHhhhhcCCCCCchhhhhchHHHHHH---------hhccCC----hHHHHHHHHHHHHhccCCchhHHHHHHhCcHH
Q 009665          220 ATWTLSNFCRGKPQPLFEQTRPALPALER---------LIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  286 (529)
Q Consensus       220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~---------ll~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  286 (529)
                      +..+|..+....+........+..+.+..         .+...|    .+++...|.+|..+.......+..+.+ .++.
T Consensus       521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~  599 (859)
T KOG1241|consen  521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG  599 (859)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence            99999999998766655555555554443         222222    456777777777776443333343444 5677


Q ss_pred             HHHHhcCC-CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009665          287 RLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  365 (529)
Q Consensus       287 ~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  365 (529)
                      .++.++.+ .+..+...|+.+++.++..-......-+. .+.|.|..-|+...+..|...|+..++.+++.-.+.+..+.
T Consensus       600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~  678 (859)
T KOG1241|consen  600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC  678 (859)
T ss_pred             HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            78888877 45567888888888887754433332222 57788888886554788889999999999985344343333


Q ss_pred             HcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc--CC-C-C-------HHHHHHHH
Q 009665          366 EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL--NC-P-D-------PRIVTVCL  432 (529)
Q Consensus       366 ~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL--~~-~-~-------~~v~~~~l  432 (529)
                      + +++..|+..|+++  +.++|-..+.+.+.++.....++.+|+-.  +++.|.+.-  +. + |       .++++.++
T Consensus       679 d-~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~--vm~llq~as~~~~d~~~~~~~dYvd~LRe~~l  755 (859)
T KOG1241|consen  679 D-ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM--VMPLLQQASSVQTDPADDSMVDYVDELREGIL  755 (859)
T ss_pred             H-HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHhccCCCCcccHHHHHHHHHHHHH
Confidence            3 4888999999987  67899999999999987666677777532  344444332  11 1 1       24677777


Q ss_pred             HHHHHHHHh
Q 009665          433 EGLENILKA  441 (529)
Q Consensus       433 ~aL~~l~~~  441 (529)
                      ++..-++..
T Consensus       756 eay~gi~qg  764 (859)
T KOG1241|consen  756 EAYTGIIQG  764 (859)
T ss_pred             HHHHHHHHH
Confidence            777766543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.22  E-value=3.1e-10  Score=112.04  Aligned_cols=344  Identities=13%  Similarity=0.117  Sum_probs=225.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCChhhH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      .+.+++..++++.+..+...+..+.++.+.-....+.+-.+.-.+..++..++..++ ..+.......+.+-..+    +
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~----r  792 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG----R  792 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh----c
Confidence            366778888888888888888888888765433334443444455666666665442 22333333333332221    0


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      -.-.-.-++..++..|+++++.+|.+|+..++.++.--..|.  +.+...|.  .|...| ....+++.-..+.++..++
T Consensus       793 ~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  793 VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV  869 (1172)
T ss_pred             cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence            000111245666778899999999999999999974222221  22333332  255556 6668888888888877766


Q ss_pred             cCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665          229 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (529)
Q Consensus       229 ~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L  307 (529)
                      ... -.....-..+++|.|..+|++....|+.+++..++.+++..++.+..---..+.--|+++|...+..++..|..++
T Consensus       870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            543 1222334578999999999999999999999999999988776544322234555677888888889999999999


Q ss_pred             HHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHH
Q 009665          308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  387 (529)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~  387 (529)
                      |.|+..-       --..++..|+.-|+.. +...|....-+++-++..+...       .++|.|++-...++..|+.-
T Consensus       950 G~IakaI-------GPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen  950 GYIAKAI-------GPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred             hHHHHhc-------CHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHh
Confidence            9998632       1224455566666555 4444444444444443321111       26888888888888899999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          388 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       388 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      .+.+++.+..........|+..  +.+.|.+.|-+.|..-+..+..++..+.
T Consensus      1015 VLkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence            9999999987655444555443  6788888888888888888888777775

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=1e-07  Score=95.51  Aligned_cols=325  Identities=15%  Similarity=0.186  Sum_probs=236.9

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP---  189 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~---  189 (529)
                      .|+.|++-+.+..-.+=|..|++.|-.++.   ..|..+...| +++|++.|..  .++++...++.++.++..+.+   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            577888877766546779999999999987   5666666555 7889999976  679999999999999985442   


Q ss_pred             ---h----------hHHH-HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchh---hhhchHHHHHHhhcc
Q 009665          190 ---K----------CRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE---QTRPALPALERLIHS  252 (529)
Q Consensus       190 ---~----------~~~~-~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~ll~~  252 (529)
                         .          +.+. +...+.|..++..+ ...|-.++.++...++.+....|.....   ....++..|+.+|.+
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               1          1122 33456777888888 7778999999999999999887544332   236788899999999


Q ss_pred             CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC----CcchHHHHHHHHHHhhcCChhhHHHHHhcCChH
Q 009665          253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  328 (529)
Q Consensus       253 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~  328 (529)
                      ..+.+|-.++..|+.++.........+.=.+++..|+.++..+    ..-|...|+..|.|+...+......+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            9999999999999999988765544444458999999999653    236788899999999999888888888999999


Q ss_pred             HHHHHhccCC--c-----hhH-----HHHHHHHHHHHhc-CC----HHHH-HHHHHcCCHHHHHHHHhcC--ChhHHHHH
Q 009665          329 CLLDLLTQNY--K-----KSI-----KKEACWTISNITA-GN----VNQI-QAIIEAGIIGPLVNLLLNA--EFEIKKEA  388 (529)
Q Consensus       329 ~L~~lL~~~~--~-----~~v-----~~~a~~~L~nl~~-~~----~~~~-~~l~~~~~l~~L~~~l~~~--~~~v~~~a  388 (529)
                      .|.++|....  +     +.-     ...+..++..+.. ++    .++. ..+...+++..|+.++.++  ..+|+.++
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998884321  1     111     1345555666555 22    2233 3455788999999998876  56899999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHcC----------ChHHHHhccCC-CCHHHHHHHHHHHHHHHHhhhhh
Q 009665          389 AWAISNATSGGSNEQIKFLVSQG----------CIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAE  445 (529)
Q Consensus       389 ~~aL~nl~~~~~~~~~~~l~~~~----------~l~~L~~lL~~-~~~~v~~~~l~aL~~l~~~~~~~  445 (529)
                      ..+++++.++.. .....+.+-.          ++-.++.+... .....+.+++.++..++-.+...
T Consensus       338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            999999998753 3334444321          12233344443 34577888888888887665543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=7.9e-08  Score=95.33  Aligned_cols=218  Identities=16%  Similarity=0.183  Sum_probs=162.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      -+.++..|++.-+-++..|+..+.++.-.. ++..+     ..+|.|++-|.+++ |.++.+|+.+++.++..+|.+.-.
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~  218 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ  218 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc
Confidence            467788888888999999998888876443 11121     36899999999999 999999999999999988776433


Q ss_pred             HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHh--hhhc
Q 009665          153 VIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS--NFCR  229 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~--~l~~  229 (529)
                           .-|.+.++|.. .+.-+....+..+++|+--.|.....     .++++..++......++...+..++.  +++.
T Consensus       219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                 34888888865 45556667788889998776665444     67899999955555666666665554  2333


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      +. ........-++..|-.++.+.|+.++.-++-+++.+....+..++     .--+.++.+|.+.++.++..|+..+.-
T Consensus       289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~g  362 (877)
T KOG1059|consen  289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLYG  362 (877)
T ss_pred             CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHHH
Confidence            32 133344566778888888899999999999999999977665444     234678899999999999999999988


Q ss_pred             hhcC
Q 009665          310 IVTG  313 (529)
Q Consensus       310 l~~~  313 (529)
                      ++..
T Consensus       363 mVsk  366 (877)
T KOG1059|consen  363 MVSK  366 (877)
T ss_pred             Hhhh
Confidence            8763

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.15  E-value=5e-09  Score=97.85  Aligned_cols=280  Identities=13%  Similarity=0.093  Sum_probs=203.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      .+.+++.|..+|.-+...+.+.+.++++.... ........=....|...+++..+++-..-|++||..+.. .++.|..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence            46778888888998888899999998876522 111100001223445556664447788889999999998 7889999


Q ss_pred             HHhCCChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          153 VIDHGAVPIFVRLLS-S-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~-~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ++...++..++..+. + .+..++-+.+.+++-+...+.. .+.+...+.++.|..++..+....+.+.++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            998888999999883 3 6788999999999999866654 466678889999999998888999999999999999987


Q ss_pred             CCCCc------hhhhhchHHHHHHhhcc---CChHHHHHHHHHHHHh-------ccC---------------Cc------
Q 009665          231 KPQPL------FEQTRPALPALERLIHS---NDDEVLTDACWALSYL-------SDG---------------TN------  273 (529)
Q Consensus       231 ~~~~~------~~~~~~~l~~L~~ll~~---~d~~v~~~a~~~L~~l-------~~~---------------~~------  273 (529)
                      .+...      ...+..-++..++.|..   .|+++..+.-..-..|       +..               +.      
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            64221      12223334444555542   3666654433332222       111               00      


Q ss_pred             --hhHHHHHH--hCcHHHHHHhcCCC-CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHH
Q 009665          274 --DKIQAVIE--AGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  348 (529)
Q Consensus       274 --~~~~~~~~--~~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~  348 (529)
                        ++...+.+  ..++..|+.+|... +|.+..-|+.=+|..+...++....+.+.|+=+.++.+|.++ +++||.+|..
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl  431 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL  431 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence              11111222  25788999999775 488888999999999999999999899999999999999999 9999999999


Q ss_pred             HHHHHhcC
Q 009665          349 TISNITAG  356 (529)
Q Consensus       349 ~L~nl~~~  356 (529)
                      ++..+..+
T Consensus       432 avQ~lm~~  439 (442)
T KOG2759|consen  432 AVQKLMVH  439 (442)
T ss_pred             HHHHHHhh
Confidence            98776543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=3.3e-08  Score=91.33  Aligned_cols=187  Identities=20%  Similarity=0.237  Sum_probs=157.8

Q ss_pred             CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH
Q 009665          253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD  332 (529)
Q Consensus       253 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  332 (529)
                      .+.+-+..++.-|..++..-+ ....++..|++..++.++.+.+..+|..|+++||.++..++.....+++.++++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            466778888888888887654 4466888899999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009665          333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ  410 (529)
Q Consensus       333 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  410 (529)
                      .+.+..+..+|..|..+++.+.+..+.....+...++...|...|.+  .+..++..|+..+..++... ......+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHHh
Confidence            99887677889999999999999988888889988889999999999  47788899999999998753 2333455555


Q ss_pred             CChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          411 GCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       411 ~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      +....+..+....+.++...++.++..++..
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            6777777777788888888888777766644

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=6e-07  Score=90.17  Aligned_cols=324  Identities=18%  Similarity=0.203  Sum_probs=240.0

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCCh-
Q 009665           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTS-  147 (529)
Q Consensus        71 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~-  147 (529)
                      +.++.|+..+.+ .-.+-|..|++.|..+...    ....+.. .+++.|++.|+.+. ++++...++..+.++...+. 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            478899988874 4578899999999987643    2444444 46778888887543 48899999999999887442 


Q ss_pred             -----h----------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHHHHhc-CChHHHHHHhc
Q 009665          148 -----E----------NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLSN-GALMPLLAQFN  209 (529)
Q Consensus       148 -----~----------~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~-~~i~~l~~~l~  209 (529)
                           +          ..+.++ ..+.|..|+.++...+-.||..++..|.++.. .+.+.++.++.. .+|..++.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 1          122333 45789999999999999999999999999874 445677776654 3789999999 


Q ss_pred             cchhHHHHHHHHHHHhhhhcCCCCCch-hhhhchHHHHHHhhccC---C-hHHHHHHHHHHHHhccCCchhHHHHHHhCc
Q 009665          210 EHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV  284 (529)
Q Consensus       210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~---d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  284 (529)
                      .+....++..+...|..+.++.+.... .....++..|..++...   | .-|..+|+..+.||..+...+...+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            777788899999999999998855544 34588999999999854   3 358899999999999888778788888999


Q ss_pred             HHHHHHhcCC---CC-----cch-----HHHHHHHHHHhhcCCh------hhHHHHHhcCChHHHHHHhccC-CchhHHH
Q 009665          285 CPRLVELLRH---PS-----PSV-----LIPALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQN-YKKSIKK  344 (529)
Q Consensus       285 ~~~L~~lL~~---~~-----~~v-----~~~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~  344 (529)
                      +++|.++|..   .+     |.-     ...++.++..++.-..      .....+...+++..|..++-++ -..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988854   22     111     2346677776665321      2223456788999999988776 3678999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcC----------CHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCC
Q 009665          345 EACWTISNITAGNVNQIQAIIEAG----------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGGS  400 (529)
Q Consensus       345 ~a~~~L~nl~~~~~~~~~~l~~~~----------~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~  400 (529)
                      ++..+++++.+++......+.+..          ++-.++.+..+. .+..|..+.+++..+.....
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~  402 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND  402 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence            999999999999887777766521          122233333333 67899999999998887643

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=6.8e-08  Score=97.16  Aligned_cols=341  Identities=16%  Similarity=0.200  Sum_probs=233.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      ..++.++++....|.+.....-..+.+.+...   |..   ..++++.+++=..+++ |.+|.-|++.++.+-.  +...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~---P~~---a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK---PDL---AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccC---chH---HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence            46899999999999888877777777776543   222   2356788888888888 9999999888777665  2222


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ..     +...+..++++.++.+|..+..+..++-..++   +.+...|.++.|-.++ .+.++.+..+|+.+|..+...
T Consensus       120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            22     35788999999999999999999999876554   5677889999999999 688999999999999999887


Q ss_pred             CCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          231 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       231 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      .+. .........+..++..+..-++.-+...+.++.+-...++...+     .++.++...|.+.+..+...+...+-+
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            753 33444456666666666666666677777777665544432222     456778888888888888888888877


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 009665          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-------------------------AI  364 (529)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l  364 (529)
                      +..........+. ..+-+.++.++.+. . +++..|..-+.-+....|+...                         .+
T Consensus       266 ~~~~~~~~~~~~~-~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVNELLF-KKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHHHHHH-HHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            7765444222222 24556666666555 3 4444444333333222222110                         01


Q ss_pred             HH-cC---CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665          365 IE-AG---IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       365 ~~-~~---~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~  440 (529)
                      .. .+   ++..+...-..-|.+..+++++|+++++......       ++++..|+++++..-..++..+...+..++.
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            11 11   3344444444558888999999999998854321       5789999999997776677777778888887


Q ss_pred             hhhh
Q 009665          441 AGEA  444 (529)
Q Consensus       441 ~~~~  444 (529)
                      +.+.
T Consensus       416 kyP~  419 (734)
T KOG1061|consen  416 KYPN  419 (734)
T ss_pred             cCCC
Confidence            7654

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2e-08  Score=92.70  Aligned_cols=187  Identities=23%  Similarity=0.238  Sum_probs=154.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009665           81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP  160 (529)
Q Consensus        81 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  160 (529)
                      .+.+.+.+..|+..|..++.  +-++...++..|++..++.++++.+ +.+|..|+|+|+.++..+|.....+++.|+++
T Consensus        93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            46678889999999999884  3567888899999999999999998 99999999999999999999999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009665          161 IFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQ  238 (529)
Q Consensus       161 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~  238 (529)
                      .|+..+.+ .+..++..|+.+++++....+.....+...++...|...+... .+..+++.++..+..+...........
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~  249 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA  249 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            99999987 5677889999999999999888888899999999999999543 688899999999999988763332232


Q ss_pred             -hhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009665          239 -TRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (529)
Q Consensus       239 -~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~  270 (529)
                       ..+....+..+....+.++...++.++..+..
T Consensus       250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence             23333445555666677787777777766553

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.02  E-value=4.2e-07  Score=85.29  Aligned_cols=321  Identities=15%  Similarity=0.159  Sum_probs=213.0

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHH------HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          159 VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDL------VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       159 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~------~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      +..++.+++. ..++....++..+.-+...+......      ......-...+.++ ...+.-+.....|.++.++...
T Consensus        67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g  145 (442)
T KOG2759|consen   67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACFG  145 (442)
T ss_pred             HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHhc
Confidence            4455556655 33455555555555554433321111      11223356778888 5666677777889998887765


Q ss_pred             CCCchh-hhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHH
Q 009665          232 PQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTV  307 (529)
Q Consensus       232 ~~~~~~-~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L  307 (529)
                      +..... ...-....|-..+++ .+++-+.-+.+||..+...++.+ ..++...++..++..+.+  .+-.++...+.|+
T Consensus       146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci  224 (442)
T KOG2759|consen  146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQYQSIFCI  224 (442)
T ss_pred             cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence            322221 222233344455554 56777888888999888877655 445556777788877733  3556788899999


Q ss_pred             HHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH------HHHHHHHHcCCHHHHHHHHhcC-
Q 009665          308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV------NQIQAIIEAGIIGPLVNLLLNA-  380 (529)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~l~~L~~~l~~~-  380 (529)
                      +-++. ++...+.+-..+.++.|..++++....+|-+-++.++.|++...+      +....++..++.+.+-.+-..+ 
T Consensus       225 WlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky  303 (442)
T KOG2759|consen  225 WLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY  303 (442)
T ss_pred             HHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence            98876 455556667789999999999887678899999999999998653      4445566776666655554443 


Q ss_pred             -ChhHHHHHHHHHHH-------HhcCC----------------------CHHHHHHHHHc--CChHHHHhccCCC-CHHH
Q 009665          381 -EFEIKKEAAWAISN-------ATSGG----------------------SNEQIKFLVSQ--GCIKPLCDLLNCP-DPRI  427 (529)
Q Consensus       381 -~~~v~~~a~~aL~n-------l~~~~----------------------~~~~~~~l~~~--~~l~~L~~lL~~~-~~~v  427 (529)
                       |+++....-..-..       +++..                      -.+++..|.++  .++..|+.+|+.. ||.+
T Consensus       304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i  383 (442)
T KOG2759|consen  304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII  383 (442)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence             55554332222221       21110                      12445555554  3488899999864 5888


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          428 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       428 ~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      ...|+.=|+.++...+.            ....++..||-+.+-+|.+|+|++|+-.|...++++..
T Consensus       384 L~VAc~DIge~Vr~yP~------------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  384 LCVACHDIGEYVRHYPE------------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             eehhhhhHHHHHHhCch------------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            88888888888887654            37788999999999999999999999999888877654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.00  E-value=2e-07  Score=90.20  Aligned_cols=355  Identities=13%  Similarity=0.131  Sum_probs=223.9

Q ss_pred             ccHHHHHHhhcCC-------CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 009665           71 ESLPAMVAGVWSD-------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA  143 (529)
Q Consensus        71 ~~l~~l~~~L~s~-------~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~  143 (529)
                      +.+|.+++.|..+       +...-..|..+|.-.+..-.    +.+.+ .++..+=+-+.+++ ..-+..|+.+++.+.
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g----d~i~~-pVl~FvEqni~~~~-w~nreaavmAfGSvm  394 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG----DKIMR-PVLGFVEQNIRSES-WANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh----hHhHH-HHHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence            3688999888642       34455555555554432211    11122 13333344566666 788999999999999


Q ss_pred             cCChh-hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--chhHHHHHHH
Q 009665          144 SGTSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNA  220 (529)
Q Consensus       144 ~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~~a  220 (529)
                      .+..+ ++..++ ..++|.+...+.++.--+++.++|+++.|+.+   ....+-..+.++..+.....  ...+.+..++
T Consensus       395 ~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~liGl~D~p~~~~nc  470 (858)
T COG5215         395 HGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLIGLMDCPFRSINC  470 (858)
T ss_pred             cCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHhhhhccchHHhhh
Confidence            86543 344444 46788888888888888999999999999865   33455556666665554322  2356778889


Q ss_pred             HHHHhhhhcCCCCCc---hhhh----hchHHHHHHhhc--cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH-
Q 009665          221 TWTLSNFCRGKPQPL---FEQT----RPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-  290 (529)
Q Consensus       221 ~~~L~~l~~~~~~~~---~~~~----~~~l~~L~~ll~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-  290 (529)
                      +|..-||..+-+...   ...+    ..++..|++...  .++...+..+..+|+.+....++....+.- |+...... 
T Consensus       471 sw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~~~k  549 (858)
T COG5215         471 SWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYTSKK  549 (858)
T ss_pred             HHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHH
Confidence            999999988753222   1122    233333333322  345678888888888887655544332221 22222222 


Q ss_pred             ----------hcCCCC----cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009665          291 ----------LLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (529)
Q Consensus       291 ----------lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  356 (529)
                                .+..++    .+++..-+..|..+........+.+ +..++..++.+|.+.....+-.....++++++..
T Consensus       550 l~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~s  628 (858)
T COG5215         550 LDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTTAFGDVYTAISALSTS  628 (858)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHH
Confidence                      222221    3455666667766665444333222 2246778888888773444556778889999875


Q ss_pred             CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC--HHHHHHHHHH
Q 009665          357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEG  434 (529)
Q Consensus       357 ~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~~l~a  434 (529)
                      -.+...... ..++|.|...|...+..+...|...++.++..-+.+...|  ....+..|++.|.++.  .+++-.++.+
T Consensus       629 l~e~Fe~y~-~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSv  705 (858)
T COG5215         629 LEERFEQYA-SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSV  705 (858)
T ss_pred             HHHHHHHHH-hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHH
Confidence            344444333 3499999999988899999999999999987655454443  2346788999988654  4677777877


Q ss_pred             HHHHHH
Q 009665          435 LENILK  440 (529)
Q Consensus       435 L~~l~~  440 (529)
                      ++-|..
T Consensus       706 FgDIAl  711 (858)
T COG5215         706 FGDIAL  711 (858)
T ss_pred             HHHHHH
Confidence            777743

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.00  E-value=6.2e-07  Score=86.88  Aligned_cols=347  Identities=14%  Similarity=0.065  Sum_probs=216.7

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHH----hhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE----FLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~----lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+..|.+..|..-..|+..+..++..+        +..|.+|-|.+    ....+.....+.+++.++++++.....  +
T Consensus        99 al~aL~s~epr~~~~Aaql~aaIA~~E--------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e  168 (858)
T COG5215          99 ALRALKSPEPRFCTMAAQLLAAIARME--------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--E  168 (858)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHHHhh--------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--H
Confidence            345677888888888888888877654        23345555544    444444357899999999999983322  2


Q ss_pred             HHH-hC-CChHHHHH-hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHH---HhccchhHHHHHHHHHHH
Q 009665          152 VVI-DH-GAVPIFVR-LLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA---QFNEHAKLSMLRNATWTL  224 (529)
Q Consensus       152 ~~~-~~-g~i~~L~~-lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~---~l~~~~~~~~~~~a~~~L  224 (529)
                      .++ .. .++-.++. .++. ++..+|-.++.+|.+-+..   .+..+...+-...+++   -..+..+.+++..+..||
T Consensus       169 ~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl  245 (858)
T COG5215         169 DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCL  245 (858)
T ss_pred             HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence            222 22 23333444 3333 6788898898888873321   2222222222222222   223677899999999999


Q ss_pred             hhhhcCCCCCchhhh-hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHH-------------HH---HhCcHHH
Q 009665          225 SNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-------------VI---EAGVCPR  287 (529)
Q Consensus       225 ~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~-------------~~---~~~~~~~  287 (529)
                      ..+..-.......+. ..+.......+.+++++|...+....+.+|....+..-.             +.   -.+++|.
T Consensus       246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~  325 (858)
T COG5215         246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE  325 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHH
Confidence            887654311111222 333345567788999999999999888887532211000             11   1257899


Q ss_pred             HHHhcCC-------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Q 009665          288 LVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  360 (529)
Q Consensus       288 L~~lL~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  360 (529)
                      |+.+|..       +++.+...|..||.-.+....   ..++. .++..+-+-++++ ++.-|..|+.+++.+..+..+.
T Consensus       326 lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~  400 (858)
T COG5215         326 LLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCED  400 (858)
T ss_pred             HHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHH
Confidence            9999854       345677777777766654222   12222 3666677777888 8999999999999999975554


Q ss_pred             HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhc-cC--CCCHHHHHHHHHHHHH
Q 009665          361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL-LN--CPDPRIVTVCLEGLEN  437 (529)
Q Consensus       361 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l-L~--~~~~~v~~~~l~aL~~  437 (529)
                      +..-+-...+|.+...+.++...++..++|+++.++.+-    ...+-..|-+...++. +.  ...|.+...+.|...+
T Consensus       401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~n  476 (858)
T COG5215         401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKEN  476 (858)
T ss_pred             HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHh
Confidence            444444458999999999888889999999999998632    2222222333222221 11  3467788889999999


Q ss_pred             HHHhhhh
Q 009665          438 ILKAGEA  444 (529)
Q Consensus       438 l~~~~~~  444 (529)
                      +...-.+
T Consensus       477 lv~h~a~  483 (858)
T COG5215         477 LVDHIAK  483 (858)
T ss_pred             HHHhhhh
Confidence            9765443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.99  E-value=1.9e-08  Score=96.30  Aligned_cols=230  Identities=17%  Similarity=0.224  Sum_probs=166.5

Q ss_pred             HHHHhhc--cCChHHHHHHHHHHHHhccCCchhHHHHHHh------CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009665          245 ALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEA------GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  316 (529)
Q Consensus       245 ~L~~ll~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  316 (529)
                      .++.+|.  +.+++++.+++..+..+....+...+.+...      ..+..++.++.+++..+...|+.+++.+....+.
T Consensus        59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~  138 (312)
T PF03224_consen   59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK  138 (312)
T ss_dssp             ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence            3334443  4689999999999999998777776666552      3678888999999999999999999999987665


Q ss_pred             hHHHHHhcCChHHHHHHhcc----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH------hc-CChhHH
Q 009665          317 QTQCIINHQALPCLLDLLTQ----NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL------LN-AEFEIK  385 (529)
Q Consensus       317 ~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l------~~-~~~~v~  385 (529)
                      ...... .+.++.++.++.+    + +..++..|+.+++++... ++.+..+.+.++++.+.+++      .. ....++
T Consensus       139 ~~~~~~-~~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~  215 (312)
T PF03224_consen  139 RSEKLV-KEALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ  215 (312)
T ss_dssp             --HHHH-HHHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred             cccchH-HHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence            444322 3455666666654    4 567789999999999976 88888888999999999999      22 266788


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh
Q 009665          386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  464 (529)
Q Consensus       386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  464 (529)
                      -+++.++.-++.  +++.+..+...++++.|.++++. ...+|.+.++.+|.|++..+.+.           +...+-..
T Consensus       216 Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~-----------~~~~mv~~  282 (312)
T PF03224_consen  216 YQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS-----------NIELMVLC  282 (312)
T ss_dssp             HHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-----------HHHHHHHH
T ss_pred             HHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-----------HHHHHHHc
Confidence            899999999988  66888999999999999999984 55789999999999999776532           35566679


Q ss_pred             chHHHHHHHhc--CCCHHHHHHHHHHHH
Q 009665          465 EGLEKIENLQS--HDNTEIYEKAVKILE  490 (529)
Q Consensus       465 g~~~~l~~L~~--~~~~~v~~~a~~il~  490 (529)
                      |++..++.|+.  -+++|+++--..+-+
T Consensus       283 ~~l~~l~~L~~rk~~Dedl~edl~~L~e  310 (312)
T PF03224_consen  283 GLLKTLQNLSERKWSDEDLTEDLEFLKE  310 (312)
T ss_dssp             -HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            99999999964  477888776555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.99  E-value=7.7e-09  Score=100.46  Aligned_cols=262  Identities=16%  Similarity=0.165  Sum_probs=179.9

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC-CC
Q 009665          158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QP  234 (529)
Q Consensus       158 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~  234 (529)
                      ++..++.+|+++.+.+|.+|+...+.++.--..|  ...+...|.  .|..-| ....+++.-..+.+++.+..... ..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence            5677888999999999999999999887321111  123333332  244445 55678888877777776654331 11


Q ss_pred             chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 009665          235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  314 (529)
Q Consensus       235 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~  314 (529)
                      ...-..+++|.|..+|++....|..+.+..++.++...++.+..---..+.--|+..|.+-+.+++..|..++|.++..-
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            22235789999999999999999999999999999887765443222345556777888888999999999999987632


Q ss_pred             hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHH
Q 009665          315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  394 (529)
Q Consensus       315 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~n  394 (529)
                      .       -..++..|+.-|+.. +...|....-+++-++..+-.       -.++|.|+.-...++..|+.-.+.+++.
T Consensus       762 G-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~f  826 (975)
T COG5181         762 G-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCF  826 (975)
T ss_pred             C-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence            2       224556666666665 554554444455444432111       1268888888888888999999999999


Q ss_pred             HhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          395 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       395 l~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      +..........|+..  +.+.|.+.|.+.|+.-+..+...|..|.
T Consensus       827 mFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~  869 (975)
T COG5181         827 MFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLV  869 (975)
T ss_pred             HHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence            987655555555443  5777888888888877777776666664

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.96  E-value=3.8e-08  Score=94.21  Aligned_cols=227  Identities=14%  Similarity=0.189  Sum_probs=163.2

Q ss_pred             hHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCCCCchhhhh-------chHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665          201 LMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTR-------PALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (529)
Q Consensus       201 i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~  272 (529)
                      ...++.+|... .+.++.++++-.+..++...+........       .....+++++.++|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            55566777555 78899999999999999987644433321       24566777888999999999999999998776


Q ss_pred             chhHHHHHHhCcHHHHHHhcCC----CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh------ccCCchhH
Q 009665          273 NDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSI  342 (529)
Q Consensus       273 ~~~~~~~~~~~~~~~L~~lL~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~v  342 (529)
                      +....... .+.++.++.++.+    ++..++..|+.+++++.. .+..+..+.+.++++.+..++      .+....++
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            54434322 3566777777654    445677889999999986 677888888999999999999      44446788


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009665          343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  421 (529)
Q Consensus       343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  421 (529)
                      +.+++.++.-++-. ++.+..+.+.++++.|++++... ..+|.+-++.++.|++..........++..|+++.+..+..
T Consensus       215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            89999999988876 78888888888999999999875 67899999999999999876558888888888888777765


Q ss_pred             --CCCHHHHHH
Q 009665          422 --CPDPRIVTV  430 (529)
Q Consensus       422 --~~~~~v~~~  430 (529)
                        ..|+++..-
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence              467777654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.2e-06  Score=88.34  Aligned_cols=290  Identities=14%  Similarity=0.143  Sum_probs=147.3

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009665           77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH  156 (529)
Q Consensus        77 ~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  156 (529)
                      .+-|++.+.-++-.|+.++.++.+.+       ++ ..+.|.+-++|++.+ +-++..|+-|...+....|+....+   
T Consensus       113 knDL~s~nq~vVglAL~alg~i~s~E-------ma-rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f---  180 (866)
T KOG1062|consen  113 KNDLNSSNQYVVGLALCALGNICSPE-------MA-RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF---  180 (866)
T ss_pred             HhhccCCCeeehHHHHHHhhccCCHH-------Hh-HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh---
Confidence            33444555555555555555554322       11 124455556666655 6666666666666665555544433   


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------------chhHHHHHHHHH
Q 009665          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSMLRNATW  222 (529)
Q Consensus       157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~~~~a~~  222 (529)
                        ++...++|.+.+.-|...++..+..+|..+++.-..+.+  .++.++..|.+              -.+|=++..++.
T Consensus       181 --~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr  256 (866)
T KOG1062|consen  181 --VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR  256 (866)
T ss_pred             --hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence              244455555555555555555555555444332222211  33334333320              013334444444


Q ss_pred             HHhhhhcCCCCCchhhhhchHHHHHHhhccC---ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcch
Q 009665          223 TLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV  299 (529)
Q Consensus       223 ~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v  299 (529)
                      .|.-|-.+++.. ...+..++..+..-..+.   ...+...+..++..|-....-+   +   -++..|-++|.+.+..+
T Consensus       257 lLriLGq~d~da-Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr---v---lainiLgkFL~n~d~Ni  329 (866)
T KOG1062|consen  257 LLRILGQNDADA-SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR---V---LAINILGKFLLNRDNNI  329 (866)
T ss_pred             HHHHhcCCCccH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH---H---HHHHHHHHHhcCCccce
Confidence            444443332111 111111111111111100   1233444444444333222111   0   12344555555555556


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009665          300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  379 (529)
Q Consensus       300 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~  379 (529)
                      +.-|+..|...+..++...+.     -=..++.+|+++ |..+|+.|...+-.+.-.  .++..     ++..|+..|..
T Consensus       330 rYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~  396 (866)
T KOG1062|consen  330 RYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLES  396 (866)
T ss_pred             eeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHh
Confidence            666666666665544433321     224688899999 999999999888877754  23332     45678889988


Q ss_pred             CChhHHHHHHHHHHHHhcCCCHH
Q 009665          380 AEFEIKKEAAWAISNATSGGSNE  402 (529)
Q Consensus       380 ~~~~v~~~a~~aL~nl~~~~~~~  402 (529)
                      .+.+.+...+.-++.++..-.|+
T Consensus       397 ~d~~~k~~~as~I~~laEkfaP~  419 (866)
T KOG1062|consen  397 SDEDFKADIASKIAELAEKFAPD  419 (866)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCc
Confidence            89999999999999888754443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=8.9e-07  Score=89.29  Aligned_cols=293  Identities=14%  Similarity=0.171  Sum_probs=199.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      ..|.+-+.|+..++-++..|+.+..++....  |..-    ..+++...++|.+.+ ..+...++..+..++..+++...
T Consensus       143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~----e~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~  215 (866)
T KOG1062|consen  143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLV----EHFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALS  215 (866)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHH----HHhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHH
Confidence            3577788889999999999999999988653  2222    236778888998888 88999999999999998887777


Q ss_pred             HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc--cchhH
Q 009665          152 VVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKL  214 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~---------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~  214 (529)
                      .+.+  .++.|+..|+.               +++-++...++.|.-+-.+++...+.+.+  ++..+..--.  ++...
T Consensus       216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~Gn  291 (866)
T KOG1062|consen  216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGN  291 (866)
T ss_pred             HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchh
Confidence            6665  56666665531               56889999999999888776655444322  2222211111  11123


Q ss_pred             HHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009665          215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  294 (529)
Q Consensus       215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  294 (529)
                      .+...++.++..+-.+.     ....-++..|-++|.+.|..++.-++..|..+...++...+   .  -=..++++|++
T Consensus       292 AILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq---r--Hr~tIleCL~D  361 (866)
T KOG1062|consen  292 AILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ---R--HRSTILECLKD  361 (866)
T ss_pred             HHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH---H--HHHHHHHHhcC
Confidence            45566666665543332     22234677888999999999999999999999987765433   1  12568999999


Q ss_pred             CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHH
Q 009665          295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPL  373 (529)
Q Consensus       295 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L  373 (529)
                      ++..++..|+..+-.++..+.  ...     .+..++.+|... +++.+...+.-+..++.. .|+...      .+..+
T Consensus       362 pD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------~idtm  427 (866)
T KOG1062|consen  362 PDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------HIDTM  427 (866)
T ss_pred             CcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------HHHHH
Confidence            999999999999999887443  332     345688888887 889999888888888762 344333      23344


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          374 VNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       374 ~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      ...+.....-|+..+...+..++..+
T Consensus       428 l~Vl~~aG~~V~~dv~~nll~LIa~~  453 (866)
T KOG1062|consen  428 LKVLKTAGDFVNDDVVNNLLRLIANA  453 (866)
T ss_pred             HHHHHhcccccchhhHHHHHHHHhcC
Confidence            45555443344444444444444433

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=4e-06  Score=82.85  Aligned_cols=343  Identities=15%  Similarity=0.130  Sum_probs=230.7

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (529)
                      ++..|+.-+..+. +.+|.....||..+.........    .-+.+.+.+++......-+..+.+.++.+.....  -..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence            5677888888888 99999999999887762211111    1245778888888888888999999999987654  355


Q ss_pred             HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009665          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  274 (529)
Q Consensus       195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~  274 (529)
                      +.+.+++..+...+....+..-++.+..+.-..+..-......++...+|.++..+.+..+.|+..+..+...+...-+.
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            66777888888888433333333333333333333322334445567788888888888889988888877766544221


Q ss_pred             -hHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009665          275 -KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (529)
Q Consensus       275 -~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  353 (529)
                       ...     -+++.++.-+....+.....++..+|.++...+.+....+. .++|.+...|.+. .+++|+.+..++..+
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp-~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP-DLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh-HhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence             112     23444444444457888999999999999888877765554 7999999999998 999999999999999


Q ss_pred             hc--CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhccCCCCHHHHH
Q 009665          354 TA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVT  429 (529)
Q Consensus       354 ~~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~  429 (529)
                      +.  .+++ +    . .++|.|++.+.++.-.+ .++...|+.-....  ++..+..     +++.|.+-+...+..+.+
T Consensus       323 ~svidN~d-I----~-~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr  390 (569)
T KOG1242|consen  323 GSVIDNPD-I----Q-KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR  390 (569)
T ss_pred             HHhhccHH-H----H-HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence            87  3444 2    1 27889999998765333 23444444333221  1111111     356666667777888889


Q ss_pred             HHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       430 ~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      .+..++.|++..-+..+.         ....+.+.  ++.|+.......|+++.-+.+.|.....
T Consensus       391 ~t~~IidNm~~LveDp~~---------lapfl~~L--lp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  391 KTAIIIDNMCKLVEDPKD---------LAPFLPSL--LPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             hHHHHHHHHHHhhcCHHH---------HhhhHHHH--hhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            999999999887644332         23334333  6667777777799999888877744433

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.90  E-value=1.8e-07  Score=90.37  Aligned_cols=320  Identities=17%  Similarity=0.111  Sum_probs=200.7

Q ss_pred             hhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009665          111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  190 (529)
Q Consensus       111 i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  190 (529)
                      .-.++++..+..+.+.+ ..+++.|+..+.|++.... ......-..+...+.++....+..++.. ...+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcc
Confidence            44578999999999998 8999999999999997221 1111122344566666666666555543 3333333221111


Q ss_pred             hHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHH
Q 009665          191 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  267 (529)
Q Consensus       191 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~  267 (529)
                      -++.   .--++.++.+|.   ...++..+.....-+..|-...+.....+...+++.|..+|.++.++|+..+=.+++.
T Consensus       158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE  234 (675)
T ss_pred             cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            0110   112445555553   3446777777666666555443333344567889999999999999999777766665


Q ss_pred             hcc---CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHH
Q 009665          268 LSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK  344 (529)
Q Consensus       268 l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~  344 (529)
                      +..   .++..   +--...++.++..+.++++.++..|+.-+..++.-..... ...-.|++..++.++.+.....++.
T Consensus       235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~  310 (675)
T KOG0212|consen  235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKE  310 (675)
T ss_pred             HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHH
Confidence            542   12211   1112577888889999999999999887777776443322 1234577888888887762223554


Q ss_pred             HHHHHH---HHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009665          345 EACWTI---SNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  420 (529)
Q Consensus       345 ~a~~~L---~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  420 (529)
                      .+..+-   ..++.. +..... ++ ..++..+...+.++..+.|.+++.-+..+-.....+...  ....+...|+.-|
T Consensus       311 ~a~~~n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tL  386 (675)
T KOG0212|consen  311 YAQMVNGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTL  386 (675)
T ss_pred             HHHHHHHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhh
Confidence            444332   222221 111111 22 236788888898888899998888888776654322222  2345778888889


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhhh
Q 009665          421 NCPDPRIVTVCLEGLENILKAGEA  444 (529)
Q Consensus       421 ~~~~~~v~~~~l~aL~~l~~~~~~  444 (529)
                      .+.+.+|+..++..+..++.....
T Consensus       387 sd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  387 SDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             cCchhHHHHHHHHHHHHHhcCccc
Confidence            999999999999999999876543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.3e-07  Score=95.28  Aligned_cols=372  Identities=15%  Similarity=0.171  Sum_probs=209.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      ...+.++++++++.+|..++....++-.    ...+.+.+.|+++.|..++.+++ |.+...|+.+|..|...+++....
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~----~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLFD----IDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhhc----CChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence            4567778888999999999999888753    33566778999999999999877 999999999999999866542222


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009665          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  232 (529)
                      .+....+..++..+...++--+...+.++.+....++  ++..   .++..+...| ++.+..+.-.+...+.++...-+
T Consensus       198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~---~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~~  271 (734)
T KOG1061|consen  198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAE---DICERLTPRL-QHANSAVVLSAVKVILQLVKYLK  271 (734)
T ss_pred             cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHH---HHHHHhhhhh-ccCCcceEeehHHHHHHHHHHHH
Confidence            2222233444444443333333333344443332222  1110   0122222223 22222332233333332222211


Q ss_pred             CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhH----------------------HH---HH-Hh---C
Q 009665          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI----------------------QA---VI-EA---G  283 (529)
Q Consensus       233 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~----------------------~~---~~-~~---~  283 (529)
                      .........+.+.++.++.+.. +++.-++.-+.-+....+...                      +.   +. +.   .
T Consensus       272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q  350 (734)
T KOG1061|consen  272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ  350 (734)
T ss_pred             HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence            1111112222233333333222 333333333322221111100                      00   00 00   1


Q ss_pred             cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009665          284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  363 (529)
Q Consensus       284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  363 (529)
                      ++.-+...-..-+......+++++|+++..-+..      .++++.|+.++... -..+..+++..+..+.+..|.....
T Consensus       351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~~~~  423 (734)
T KOG1061|consen  351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNKYES  423 (734)
T ss_pred             HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCchhh
Confidence            3333444444557788899999999998754433      57899999999877 6678888999999998865553322


Q ss_pred             HHHcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          364 IIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       364 l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                           +++.+...+.+ ++++.|....|.++..+...+  ...+     ++..+++-..++...|+...+.+...++-..
T Consensus       424 -----vv~~l~~~~~sl~epeak~amiWilg~y~~~i~--~a~e-----lL~~f~en~~dE~~~Vql~LLta~ik~Fl~~  491 (734)
T KOG1061|consen  424 -----VVAILCENLDSLQEPEAKAALIWILGEYAERIE--NALE-----LLESFLENFKDETAEVQLELLTAAIKLFLKK  491 (734)
T ss_pred             -----hhhhhcccccccCChHHHHHHHHHHhhhhhccC--cHHH-----HHHHHHhhcccchHHHHHHHHHHHHHHHhcC
Confidence                 34445544544 488999999999999887542  2222     3445666666777888888887777776554


Q ss_pred             hhhhhcCCCCccchHHHHHHhhchHHHHHH--HhcCCCHHHHHHHHHHHHhh
Q 009665          443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIEN--LQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~--L~~~~~~~v~~~a~~il~~~  492 (529)
                      ....           .+++      ..+-.  .++.++++++.++...-.-+
T Consensus       492 p~~t-----------q~~l------~~vL~~~~~d~~~~dlrDr~l~Y~RlL  526 (734)
T KOG1061|consen  492 PTET-----------QELL------QGVLPLATADTDNPDLRDRGLIYWRLL  526 (734)
T ss_pred             CccH-----------HHHH------HHHHhhhhccccChhhhhhHHHHHHHh
Confidence            3221           1222      22222  26778899999987765533

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.87  E-value=8.6e-07  Score=90.72  Aligned_cols=352  Identities=14%  Similarity=0.136  Sum_probs=217.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009665           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  154 (529)
Q Consensus        75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  154 (529)
                      .+++.+.+.|.+.|+.|+.-|..-+... .-..+.=-+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.- 
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~-   85 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLET-   85 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHH-
Confidence            6788899999999999999888766543 111222223457888999999998 9999999999999997554443221 


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh----cc-chhHHHHHHHHHHHhhhhc
Q 009665          155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF----NE-HAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l----~~-~~~~~~~~~a~~~L~~l~~  229 (529)
                         .+..|+.-+-++....|..+.-.|......-+......+...+.+.++..+    .. .....++..++..+..+..
T Consensus        86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence               245555554444444444444333322211111122223333444444444    22 2233356666666554443


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHHHHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVG  308 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al~~L~  308 (529)
                      ............++..++.-+.++-..|+..++.+|+.++...+..   .. .+++..|+.-|..+ +......-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            3211111244566777777788888999999999999998654321   11 15566666666553 4445555677788


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc------
Q 009665          309 NIVTGDDMQTQCIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------  379 (529)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~------  379 (529)
                      .++.........-. ..++|.+.+..   ... +.++|+.+..++..+....|..+-..+.. ++..+++.+..      
T Consensus       239 ~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCC
Confidence            87764433222212 25677777777   555 78999999999998887666655333321 34444443321      


Q ss_pred             -------------------------C---ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHH
Q 009665          380 -------------------------A---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  431 (529)
Q Consensus       380 -------------------------~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~  431 (529)
                                               +   ++.||++|+.++..+... ..+....+.+. +-+.++.-++..+..|+.-+
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHH
Confidence                                     0   256999999999999875 44665555443 55677777887777888777


Q ss_pred             HHHHHHHHHh
Q 009665          432 LEGLENILKA  441 (529)
Q Consensus       432 l~aL~~l~~~  441 (529)
                      ..++..++..
T Consensus       394 f~~yi~ll~q  403 (1233)
T KOG1824|consen  394 FHAYIALLKQ  403 (1233)
T ss_pred             HHHHHHHHHc
Confidence            7777777653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=2.7e-07  Score=95.16  Aligned_cols=277  Identities=17%  Similarity=0.216  Sum_probs=208.0

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009665           84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV  163 (529)
Q Consensus        84 ~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  163 (529)
                      --..|+.|.......-+..+.||.+       +|..++.|-+   .--|..|+..|+.+..-.+-....-+.-|++|..+
T Consensus       449 FFteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVL  518 (1387)
T KOG1517|consen  449 FFTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVL  518 (1387)
T ss_pred             hHHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHH
Confidence            3456777777777776666666654       3555555543   34488899999999887788888888889999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch--hHHHHHHHHHHHhhhhcCCCCCchhh-hh
Q 009665          164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQ-TR  240 (529)
Q Consensus       164 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~-~~  240 (529)
                      ++|+++-.+++-..+.+...|..-++.|+..+++.++-..+++.|..+.  +++-+..++..|+.++.+.+..+... ..
T Consensus       519 KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~  598 (1387)
T KOG1517|consen  519 KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG  598 (1387)
T ss_pred             HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc
Confidence            9999999999999999999988777889888888888888888885422  45778888999999999875544443 46


Q ss_pred             chHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC----Ch
Q 009665          241 PALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DD  315 (529)
Q Consensus       241 ~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~  315 (529)
                      +++...+..|.++ .+-++..+|-+|+.|=.+.+...-.-.+.+..+.|..+|.++-++||..|+.+||.+..+    .+
T Consensus       599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd  678 (1387)
T KOG1517|consen  599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD  678 (1387)
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence            7788888888875 678899999999998766544333345568899999999999999999999999999885    33


Q ss_pred             hhHHHH------------HhcCCh---HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 009665          316 MQTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  371 (529)
Q Consensus       316 ~~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~  371 (529)
                      ++...+            ++..+.   -.++.+++.. ++-+|.+.+-+|+.+..+...+...+.-....+
T Consensus       679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~  748 (1387)
T KOG1517|consen  679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP  748 (1387)
T ss_pred             hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence            333322            222222   2566677788 899999999999999987666555444433333

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.4e-05  Score=81.15  Aligned_cols=328  Identities=15%  Similarity=0.178  Sum_probs=221.9

Q ss_pred             HHHHHHHHHHHHhcCCCCChhhH-----HhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009665           87 IQLDATTQFRKLLSIERSPPINE-----VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI  161 (529)
Q Consensus        87 ~~~~a~~~l~~lls~~~~~~~~~-----~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  161 (529)
                      -...++.+|+++++..  +....     ..--|.++.++.++.....+.++.-|+.++..+.. +.++...++..|.+..
T Consensus      1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            4456889999998764  22211     12236778888888766558899999999988877 7889999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC---CCCchhh
Q 009665          162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQ  238 (529)
Q Consensus       162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~  238 (529)
                      |+.+|.+ -+..|+.++.+|..++.... ......+.|++..+..++-.+.++..+..++..+..+...+   |......
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9999987 46789999999999987654 55667788999999998877788899999999999998876   3333323


Q ss_pred             hhchHHHH-----------HHhhcc--CChHH------HHHHHHHHHHhcc--------CCc------hh----------
Q 009665          239 TRPALPAL-----------ERLIHS--NDDEV------LTDACWALSYLSD--------GTN------DK----------  275 (529)
Q Consensus       239 ~~~~l~~L-----------~~ll~~--~d~~v------~~~a~~~L~~l~~--------~~~------~~----------  275 (529)
                      +..+-..+           +.++..  ++|++      +...-..+..+..        ++.      +.          
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            22222233           333331  22221      1122222222211        000      00          


Q ss_pred             -------HHH-------------HHHhCcHHHHHHhcCCCCcchH--HHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH
Q 009665          276 -------IQA-------------VIEAGVCPRLVELLRHPSPSVL--IPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  333 (529)
Q Consensus       276 -------~~~-------------~~~~~~~~~L~~lL~~~~~~v~--~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  333 (529)
                             ...             .+-.++++.+.+++..+++.-.  ..-..++-.+....+...+.+-..|.+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                   000             1111466666777765544322  222233344455566667777788999999999


Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 009665          334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  413 (529)
Q Consensus       334 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  413 (529)
                      +... +..+-+.|..+|..++.. .-.+..+.....+..++..|... +....-|+.+|..+......+........|++
T Consensus      2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            9877 666778899999999876 55666666666677777777653 45566899999999887666667777788999


Q ss_pred             HHHHhccCC
Q 009665          414 KPLCDLLNC  422 (529)
Q Consensus       414 ~~L~~lL~~  422 (529)
                      +.|+.+|+.
T Consensus      2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred             HHHHHHhcc
Confidence            999999974

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.77  E-value=1.8e-06  Score=86.12  Aligned_cols=333  Identities=13%  Similarity=0.121  Sum_probs=209.6

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009665          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN--TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (529)
Q Consensus       116 i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (529)
                      +..++..|.+.+ +.++.+|+..+..++.--..+  -..+...|  -.|...|...++++.-..+.+|..|+....-.+.
T Consensus       801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence            345566777888 999999999999888621111  12233334  3466778888888887777777766532210000


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCch-hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~  272 (529)
                      .---.+++|.|..+| ++....++.++...+..+|...+.... ...-.+---|+.+|.+.+.+++..+..++++++..-
T Consensus       878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence            001235788888888 788899999999999999988744222 122233345778888889999999999999998653


Q ss_pred             chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (529)
Q Consensus       273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  352 (529)
                      ...       .++..|+.-|...+-..+....-+++-.+..+..       ..++|.|+.=...+ ...|+...+.+++-
T Consensus       957 GPq-------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen  957 GPQ-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred             CHH-------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence            221       4455555555544433333333333333332211       24567777766777 77888888888887


Q ss_pred             HhcCC-HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-------CCC
Q 009665          353 ITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-------CPD  424 (529)
Q Consensus       353 l~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-------~~~  424 (529)
                      +.... .-...++..  +.|.|-+.|.+.|.--|..|+.++.+++.+..        -.|+.+.++-||.       .+.
T Consensus      1022 ~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~s 1091 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETS 1091 (1172)
T ss_pred             HHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCC
Confidence            76521 122223332  78889999999999999999999999988642        1233333333332       456


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009665          425 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  496 (529)
Q Consensus       425 ~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~  496 (529)
                      |.++....+++..+-..-                   ...-.+..+.+=.-|+...|++..-.+++..+-.+
T Consensus      1092 Phviqa~~e~~eg~r~~L-------------------g~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1092 PHVIQAFDEAMEGLRVAL-------------------GPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred             hHHHHHHHHHHHHHHHHh-------------------chHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence            777777777776553221                   11112334444456888888888777777666543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=3.4e-05  Score=70.19  Aligned_cols=342  Identities=14%  Similarity=0.145  Sum_probs=226.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh---hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP---INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~---~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      +|.+-..|..++..+...++..+..++...+...   +..++..++++.++.++-.++ .++...|...+..++. .+..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence            5666677788889999999999999886542212   445668999999999999888 8999999999999998 7888


Q ss_pred             HHHHHhCCChHHH--HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665          150 TRVVIDHGAVPIF--VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (529)
Q Consensus       150 ~~~~~~~g~i~~L--~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  227 (529)
                      ...+.++.....+  ..+-...+.-.|......+..+..-++.....+...|.+..|..-+....|.-+..++......|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            8888887766543  33334456667777888888888888888888888999998888885557878888888888888


Q ss_pred             hcCCCCCchhhhhchHHHHHHhhcc--CChHHHHHHHHHHHHhccCCch---hHHHHHHh--CcHHHHHHhcCCCCcchH
Q 009665          228 CRGKPQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLRHPSPSVL  300 (529)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--~~~~~L~~lL~~~~~~v~  300 (529)
                      +.......+....+++..+..++.-  .+|--.-.++...+.+.....-   .-+.+++.  -.+...++.+...++...
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            8766555555667888888888763  3443333344433333221100   00112221  234445566677888899


Q ss_pred             HHHHHHHHHhhcCChhhHHHHHhcCC--hHHHHHHhccCCchhHHHHHHHHHHHHhc---CCHHHH---------H-HHH
Q 009665          301 IPALRTVGNIVTGDDMQTQCIINHQA--LPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQI---------Q-AII  365 (529)
Q Consensus       301 ~~al~~L~~l~~~~~~~~~~~~~~~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~---------~-~l~  365 (529)
                      ..|+.++|.+.+.. +..+.+.+.|-  ...++.-..+.....-+..+..+|.+++.   -.++++         . .+.
T Consensus       322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif  400 (524)
T KOG4413|consen  322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF  400 (524)
T ss_pred             HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence            99999999998744 34555555442  23333333232133345667778888875   223322         1 111


Q ss_pred             Hc-------CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009665          366 EA-------GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  418 (529)
Q Consensus       366 ~~-------~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  418 (529)
                      ++       .-+..+..+++.+.++++..+...+..++.... -....+...++++...+
T Consensus       401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPW-alkeifakeefieiVtD  459 (524)
T KOG4413|consen  401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPW-ALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcH-HHHHHhcCccceeeecc
Confidence            11       235566777888899999999999999987421 23333444455554443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.76  E-value=1.2e-05  Score=82.53  Aligned_cols=410  Identities=15%  Similarity=0.168  Sum_probs=233.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhh-------------------------------------cC
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ-------------------------------------SG  114 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~-------------------------------------~g  114 (529)
                      .+..+++.|...+.++|..|++++.-+.+.-+......+++                                     ..
T Consensus        48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t  127 (1233)
T KOG1824|consen   48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT  127 (1233)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence            46778888888888999999988886654432222222221                                     11


Q ss_pred             ChHH----HHHhhcC-CCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 009665          115 VVPR----FIEFLSR-DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP  189 (529)
Q Consensus       115 ~i~~----Li~lL~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  189 (529)
                      +.+.    |...+.. ++...++..++.+++.+...-.+.... ...+++..++..+.++-..+|..++.+|+.++...+
T Consensus       128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~  206 (1233)
T KOG1824|consen  128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN  206 (1233)
T ss_pred             HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence            2222    2222211 111235566666555554421111111 223445556666677788999999999999996554


Q ss_pred             hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh---ccCChHHHHHHHHHHH
Q 009665          190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---HSNDDEVLTDACWALS  266 (529)
Q Consensus       190 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll---~~~d~~v~~~a~~~L~  266 (529)
                      .  +.  -.+++..+++-|.....+...+....+|..+|+.....--.....++|.+.+..   ..+|+++++.++.++.
T Consensus       207 ~--~l--y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale  282 (1233)
T KOG1824|consen  207 R--DL--YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE  282 (1233)
T ss_pred             H--HH--HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence            2  22  223677788888677778888888999999998764444455678889998888   6778999999999998


Q ss_pred             HhccCCchhHHHHHHhCcHHHHHHhcCC----------------------------------CCcchHHHHHHHHHHhhc
Q 009665          267 YLSDGTNDKIQAVIEAGVCPRLVELLRH----------------------------------PSPSVLIPALRTVGNIVT  312 (529)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~----------------------------------~~~~v~~~al~~L~~l~~  312 (529)
                      .+....+..+...+. .++..++..+.+                                  -+|.||+.|+.|+..+..
T Consensus       283 ~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is  361 (1233)
T KOG1824|consen  283 SFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS  361 (1233)
T ss_pred             HHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence            877655443332222 344444444421                                  024589999999988876


Q ss_pred             CChhhHHHHH------------------hcCChHHHHHHhccCC-------c-------------hhHHH----------
Q 009665          313 GDDMQTQCII------------------NHQALPCLLDLLTQNY-------K-------------KSIKK----------  344 (529)
Q Consensus       313 ~~~~~~~~~~------------------~~~~l~~L~~lL~~~~-------~-------------~~v~~----------  344 (529)
                      ...+....+.                  ...++..++.+|.+..       +             ..++.          
T Consensus       362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~  441 (1233)
T KOG1824|consen  362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ  441 (1233)
T ss_pred             ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH
Confidence            4432222111                  1233444444443210       0             01111          


Q ss_pred             ------------HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009665          345 ------------EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQ  410 (529)
Q Consensus       345 ------------~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  410 (529)
                                  .+...|..+....|.....-+ ..++|.++..+.+.  ....+..++..+.+....+.++...-... 
T Consensus       442 ~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~-~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~-  519 (1233)
T KOG1824|consen  442 KQLREKSVKTRQGCFLLLTELINVLPGALAQHI-PSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLS-  519 (1233)
T ss_pred             HHHhhccccchhhHHHHHHHHHHhCcchhhhcc-cccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchh-
Confidence                        111111111111111110000 12567777777664  45678888888888877666665444322 


Q ss_pred             CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHH-hcCCCHHHHHHHHHHH
Q 009665          411 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEKAVKIL  489 (529)
Q Consensus       411 ~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L-~~~~~~~v~~~a~~il  489 (529)
                      ...+.+.....++-+++-..++-....++++-...+... .-+.++|...+-.+    .+..| ..+.+.+|+++|..++
T Consensus       520 ~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~-~~d~~~~v~~m~~~----tl~rL~a~d~DqeVkeraIscm  594 (1233)
T KOG1824|consen  520 ALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPS-SFDASPYVKTMYDC----TLQRLKATDSDQEVKERAISCM  594 (1233)
T ss_pred             hhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCc-cCCCChhHHHHHHH----HHHHHhcccccHHHHHHHHHHH
Confidence            245555556666777877777777777776654332210 01234454444322    24444 4677899999998877


Q ss_pred             HhhCC
Q 009665          490 ETYWV  494 (529)
Q Consensus       490 ~~~~~  494 (529)
                      ..|..
T Consensus       595 gq~i~  599 (1233)
T KOG1824|consen  595 GQIIA  599 (1233)
T ss_pred             HHHHH
Confidence            76654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=1.6e-05  Score=79.50  Aligned_cols=255  Identities=15%  Similarity=0.169  Sum_probs=181.6

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (529)
                      +-+-++.+|++.. |-+|..|+.+++.+....|+..+.     .+|.|..-|..+++.|+..|+..++.|+..+|...  
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence            4466778888888 899999999999999866665443     56999999999999999999999999998887531  


Q ss_pred             HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHH--hccC
Q 009665          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSY--LSDG  271 (529)
Q Consensus       195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~--l~~~  271 (529)
                      +   ..-|.+..++..+.+.=+.......+..|+--.|    .....+++.|..++.+. -..+...|+.++..  ++.+
T Consensus       217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence            1   2456677777555565566666777777765433    23457788888888765 34566666666543  3333


Q ss_pred             CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                      .++... .+. -++..|-.++.+.++.++..++.+++.+....+...+.     --+.++.+|.+. +..+|..|...|-
T Consensus       290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence            212211 111 34667777888999999999999999999877755542     346789999998 9999999999998


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCC
Q 009665          352 NITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~  399 (529)
                      .+...  +++..     ++..|+..+... ....|.+.+.-+..+++..
T Consensus       362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s  403 (877)
T KOG1059|consen  362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS  403 (877)
T ss_pred             HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence            87753  33333     444566555544 3477877777777776643

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=1.8e-07  Score=89.93  Aligned_cols=309  Identities=14%  Similarity=0.110  Sum_probs=198.3

Q ss_pred             HHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccC
Q 009665          175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN  253 (529)
Q Consensus       175 ~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~  253 (529)
                      ..++.+|-.++..-...|.-+.+..+.+.|++.| .+++..+...+...++|+.-.. +-.......+++..|++++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            3444555666666566777788888999999999 6666666667777777776654 4445556689999999999999


Q ss_pred             ChHHHHHHHHHHHHhccCCchhHH-HHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh---hHHHHHhc----C
Q 009665          254 DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH----Q  325 (529)
Q Consensus       254 d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~----~  325 (529)
                      |..++....|.+.++.-+..+..+ .++..-++..++.+..++...++..++.++.|+...+..   .....++.    -
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            999999999999999866544322 244556789999999999999999999999999874332   22222221    2


Q ss_pred             ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcC-----------ChhHHHHHHHHHH
Q 009665          326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNA-----------EFEIKKEAAWAIS  393 (529)
Q Consensus       326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L~~~l~~~-----------~~~v~~~a~~aL~  393 (529)
                      ++..++..+... +|-.-.+.|+.|.++++.+....+.++ +..++..+..+|...           ..++-..-.+...
T Consensus       566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v  644 (743)
T COG5369         566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV  644 (743)
T ss_pred             HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence            456667777776 666677779999999987555444444 344555555555321           1122222233333


Q ss_pred             HHhcCCCHHHHHHHHHcCChHHHHhccC---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHH
Q 009665          394 NATSGGSNEQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI  470 (529)
Q Consensus       394 nl~~~~~~~~~~~l~~~~~l~~L~~lL~---~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l  470 (529)
                      ++...++  .....+..  -+.+-..=+   .++.++..+..|.+.++.-..+..+..   +..-..++.+...|.-+-+
T Consensus       645 ~l~e~~d--~f~r~~~~--~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e~l  717 (743)
T COG5369         645 NLSENSD--KFKRLVLT--TPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIREWL  717 (743)
T ss_pred             ccccccc--ccccceec--CCCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHHHH
Confidence            3333211  11110000  022222211   233456666777777743222111100   0112457888889999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhh
Q 009665          471 ENLQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       471 ~~L~~~~~~~v~~~a~~il~~~  492 (529)
                      ..+|.++++.|++++...|..+
T Consensus       718 ~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         718 VKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHhccCcHHHHHHHHHHHHhh
Confidence            9999999999999999988754

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.68  E-value=1.4e-06  Score=82.57  Aligned_cols=272  Identities=17%  Similarity=0.184  Sum_probs=185.2

Q ss_pred             hhHHhhcCChHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 009665          107 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV  184 (529)
Q Consensus       107 ~~~~i~~g~i~~Li~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl  184 (529)
                      .+.+...|.+..|++++..++. ..++.+|++.|..+..  .++++.++..| +..++.+... +..++....+.+|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3445567899999999998872 3569999999999986  78888888877 4555555443 6788999999999999


Q ss_pred             hCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhhccCChHHHHHHH
Q 009665          185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHSNDDEVLTDAC  262 (529)
Q Consensus       185 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~  262 (529)
                      ..++.+....++..|++..++-.. ...++.+.+.++.+|.|.+.+.  ..........+...|..+..+.|+-.+.++|
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999888888899999999988877 6678999999999999988775  2223334456666787787788888999999


Q ss_pred             HHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhH
Q 009665          263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI  342 (529)
Q Consensus       263 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  342 (529)
                      .+++.|+.+.+ ....+.++|.+..+-.++.+-++.....   --...+.+.        ....++.|+.+|++. ..+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence            99999987753 3345666676665555555544432111   001111111        123467788888876 5555


Q ss_pred             HHHHHHHHHHHhcCCHH--HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665          343 KKEACWTISNITAGNVN--QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (529)
Q Consensus       343 ~~~a~~~L~nl~~~~~~--~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  395 (529)
                      +..+++-++.=+.-...  ....+-+-|.+..|-++.++.+.--.+-|..+|.-+
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            55555555433331111  122334567788888888876544444455555444

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.67  E-value=1.2e-05  Score=78.84  Aligned_cols=335  Identities=13%  Similarity=0.137  Sum_probs=211.5

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh--hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS--ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (529)
                      ++..++..|.+.. |+++..|+...+.++.--.  .....+...|  ..|...|...++++.-..+.+++.|..... ++
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~  680 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR  680 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence            4567778888888 9999999998888775111  1122333444  346667777888888888888877764321 11


Q ss_pred             H-HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchh-hhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009665          193 D-LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (529)
Q Consensus       193 ~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~  270 (529)
                      . .---.|++|.+..+| .+....+..+....+..+|...|..... ..-.+---|+.+|.+.+.+++.+|..+++.++.
T Consensus       681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            1 011346889999999 7778888999999999999887543222 112333457788888999999999999999986


Q ss_pred             CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665          271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (529)
Q Consensus       271 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  350 (529)
                      .-...       .++..|+.-|...+-..+....-+++-.+..+.       -..++|.|+.=...+ ...|+.....++
T Consensus       760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam  824 (975)
T COG5181         760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM  824 (975)
T ss_pred             hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence            53322       445556655555443333333333333333211       124566666666666 777888888888


Q ss_pred             HHHhcCC-HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc----CCCCH
Q 009665          351 SNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL----NCPDP  425 (529)
Q Consensus       351 ~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL----~~~~~  425 (529)
                      +-+.... .....++..  +.|.|-+.|.+.|+--|..|...+.+++.++....     ..++.-.|+++|    -.+.|
T Consensus       825 ~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg-----~eda~IHLlNllwpNIle~sP  897 (975)
T COG5181         825 CFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG-----DEDAAIHLLNLLWPNILEPSP  897 (975)
T ss_pred             HHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc-----cHHHHHHHHHHhhhhccCCCc
Confidence            7766521 222333333  77888889999999999999999999988653110     001122333333    35677


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          426 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       426 ~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      .++....+++..+...-.                   ..-.+..+++=.-|++..|+.+.-...+..+-.
T Consensus       898 hvi~~~~Eg~e~~~~~lg-------------------~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~  948 (975)
T COG5181         898 HVIQSFDEGMESFATVLG-------------------SGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVF  948 (975)
T ss_pred             HHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence            777777777766543321                   111234555556789999988876666665543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=1.4e-06  Score=90.08  Aligned_cols=255  Identities=16%  Similarity=0.204  Sum_probs=193.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+|.+++-|-|+  --|+.|+..|...+... .-.+.....-|++|..+++|+++. .+++---+.+-..|..-++.+..
T Consensus       473 QLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  473 QLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             hcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence            445555544442  34567888888888664 555666678899999999999998 89999999999999888899999


Q ss_pred             HHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          152 VVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      .+++.++-..+++.|..   -+++-|..|+.+|+.++..-+-.++.+++.+.+...+..+..+..+-++..++-+|..|-
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            99988888888888876   246899999999999998777778888898999988888855456778889999999999


Q ss_pred             cCCCCCchh-hhhchHHHHHHhhccCChHHHHHHHHHHHHhccC----CchhHHHH------------HHhCcH---HHH
Q 009665          229 RGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PRL  288 (529)
Q Consensus       229 ~~~~~~~~~-~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~~~~---~~L  288 (529)
                      .+.+..... ....+...|..+|.++-++|+..++.+|+.+..+    .++....+            ++.-+.   -.+
T Consensus       629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l  708 (1387)
T KOG1517|consen  629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL  708 (1387)
T ss_pred             hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence            887444333 3467888999999999999999999999998865    22222221            222222   256


Q ss_pred             HHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHH
Q 009665          289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL  330 (529)
Q Consensus       289 ~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L  330 (529)
                      +.++++..+-++....-+|+.++.+.......+.-....+-.
T Consensus       709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~  750 (1387)
T KOG1517|consen  709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPES  750 (1387)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccch
Confidence            667788888889888888999888777666555443343333

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=3e-05  Score=78.33  Aligned_cols=324  Identities=18%  Similarity=0.209  Sum_probs=191.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+..+-+.|+.+|+.+|-.|++++..+    +-+.+.-    =++-.+-+...+.. +-+|..|+.+|-.+-+-+++...
T Consensus       109 SIntfQk~L~DpN~LiRasALRvlSsI----Rvp~IaP----I~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~  179 (968)
T KOG1060|consen  109 SINTFQKALKDPNQLIRASALRVLSSI----RVPMIAP----IMLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD  179 (968)
T ss_pred             eHHHHHhhhcCCcHHHHHHHHHHHHhc----chhhHHH----HHHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence            355666677777777776666666543    1111111    11223344555666 88899999998888877777766


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      .+     +..+-.+|.+.++-|.-.|+.++-.+|-+.-   +.+  .+-...+.++| .+-+.=-+..+...|..-|+..
T Consensus       180 qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--HknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~  248 (968)
T KOG1060|consen  180 QL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ  248 (968)
T ss_pred             HH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence            44     3566677888888888888888888875432   222  12345566665 3222222333334444434433


Q ss_pred             -CCCc----------------------------hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh
Q 009665          232 -PQPL----------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA  282 (529)
Q Consensus       232 -~~~~----------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~  282 (529)
                       +.+.                            ..-..-++...-.+|.+.++.|...++.+..+++...  ...     
T Consensus       249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~-----  321 (968)
T KOG1060|consen  249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT-----  321 (968)
T ss_pred             CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----
Confidence             1110                            0111234445556778889999999999999997543  222     


Q ss_pred             CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHH
Q 009665          283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQI  361 (529)
Q Consensus       283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~  361 (529)
                      .++..|+.+|.+. ..++...+..+..++...+...        .|.+..+.-.+. ...++..-..+|++|+....-  
T Consensus       322 ~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF--------~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni--  390 (968)
T KOG1060|consen  322 KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLF--------EPHLKSFFVRSSDPTQVKILKLEILSNLANESNI--  390 (968)
T ss_pred             HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhh--------hhhhhceEeecCCHHHHHHHHHHHHHHHhhhccH--
Confidence            5678888888764 3567777888888776544221        244444432221 234555556677777653111  


Q ss_pred             HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       362 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      .     .+++.+...+.+.+..+...|+.+|+.++.... .     +...++..|+.++++.+..|+..+.-.|..+++.
T Consensus       391 ~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~  459 (968)
T KOG1060|consen  391 S-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK  459 (968)
T ss_pred             H-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence            1     145566666666666677777777777765432 1     2233566777777777777777777777777766


Q ss_pred             hhh
Q 009665          442 GEA  444 (529)
Q Consensus       442 ~~~  444 (529)
                      .+.
T Consensus       460 ~p~  462 (968)
T KOG1060|consen  460 DPA  462 (968)
T ss_pred             ChH
Confidence            544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=7.4e-06  Score=81.02  Aligned_cols=319  Identities=18%  Similarity=0.167  Sum_probs=198.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHH-HHHHHHHHhcCChhhHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFE-AAWALTNIASGTSENTR  151 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~-a~~~L~~l~~~~~~~~~  151 (529)
                      ++.+.+.+.+.....+..++..+..+..   ...+..+.+.+++..|...+.+.. ...+.+ ++.+...... .-.   
T Consensus       136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~---g~~i~~~~~~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~-~Lg---  207 (569)
T KOG1242|consen  136 LELLLELLTSTKIAERAGAAYGLAGLVN---GLGIESLKEFGFLDNLSKAIIDKK-SALNREAALLAFEAAQG-NLG---  207 (569)
T ss_pred             HHHHHHHhccccHHHHhhhhHHHHHHHc---CcHHhhhhhhhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHH-hcC---
Confidence            4555566666666677777777766653   334555666778888888887766 333333 3322222222 100   


Q ss_pred             HHHhCC---ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          152 VVIDHG---AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       152 ~~~~~g---~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      ...+.+   .+|.++....+....+|+.+..+.-.+...-+...-    .-.++.++.-+ ..........++..+..+.
T Consensus       208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l-~~~kWrtK~aslellg~m~  282 (569)
T KOG1242|consen  208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSL-LEAKWRTKMASLELLGAMA  282 (569)
T ss_pred             CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHH-HHHhhhhHHHHHHHHHHHH
Confidence            112223   345555555567788888888887776533221110    11345555544 2235567778888888888


Q ss_pred             cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch-hHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L  307 (529)
                      ...|.........++|.+.+.|-+.+++++..+..++..++.-.+. -++     .++|.|+..+.+++..+ ..++..|
T Consensus       283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~-~e~~~~L  356 (569)
T KOG1242|consen  283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYT-PECLDSL  356 (569)
T ss_pred             HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccch-HHHHHhh
Confidence            7766666677889999999999999999999999999988854321 122     46788888888876333 3344444


Q ss_pred             HHhhcCC--hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009665          308 GNIVTGD--DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (529)
Q Consensus       308 ~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~~~  383 (529)
                      +.-..-.  +...-    .-++|.|..-+... +..+++.++.++.|++.-  ++.....++.. ++|.|-..+.+..|+
T Consensus       357 ~~ttFV~~V~~psL----almvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~PE  430 (569)
T KOG1242|consen  357 GATTFVAEVDAPSL----ALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVPE  430 (569)
T ss_pred             cceeeeeeecchhH----HHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCChh
Confidence            4322111  11111    12345555555555 778889999999999983  45555555543 778888888888999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009665          384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  421 (529)
Q Consensus       384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  421 (529)
                      +|..+..+|+.+........   +  .+.++.+...+.
T Consensus       431 vR~vaarAL~~l~e~~g~~~---f--~d~~p~l~e~~~  463 (569)
T KOG1242|consen  431 VRAVAARALGALLERLGEVS---F--DDLIPELSETLT  463 (569)
T ss_pred             HHHHHHHHHHHHHHHHHhhc---c--cccccHHHHhhc
Confidence            99999999999876432111   1  345555555553

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.64  E-value=2.1e-06  Score=81.36  Aligned_cols=266  Identities=14%  Similarity=0.098  Sum_probs=174.4

Q ss_pred             ccHHHHHHhhcCCCHHH--HHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           71 ESLPAMVAGVWSDDRNI--QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~--~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      +.+..+++++.+++.+.  +.++.+.|..++..+   +.+.+..-| +..++.+-+....++++...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae---N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE---NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh---hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            57889999999887654  899999999998654   345555544 444445544444478999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665          149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  227 (529)
                      ....++..|++..++......++.+..+|+.+|+|++.+ ....+..+++..+-+.|..+. .+.|.-++..+|.+.+.+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            999999999999999999988999999999999999854 345566777777777777776 556888899999999999


Q ss_pred             hcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665          228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (529)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L  307 (529)
                      +..+.........+.+..+-.++.+-|+.--          +....+..+ -....-++.|+.+|++..-+.+..+..-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            9887444444445555554455555454321          111111111 01114567888888865433332222222


Q ss_pred             HHhh--cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009665          308 GNIV--TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (529)
Q Consensus       308 ~~l~--~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  353 (529)
                      ..=+  ..-......+-+-|.+..|..+..++ +..-.+.|-.+|.-|
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi  450 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence            1111  11111223344668888888888876 544344444444433

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=4.8e-07  Score=87.04  Aligned_cols=282  Identities=17%  Similarity=0.235  Sum_probs=191.0

Q ss_pred             HHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009665          109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS  188 (529)
Q Consensus       109 ~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  188 (529)
                      .+.+..+...|+++|+.++ ..+..-+...++|..-.-+..+..+++.|++..|+.++.+.+..++....|.+..+...+
T Consensus       426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync  504 (743)
T COG5369         426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC  504 (743)
T ss_pred             hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence            3456678899999999987 677788888899988877788889999999999999999999999999999999988544


Q ss_pred             c-hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC--Cchhhh------hchHHHHHHhhccCChHHHH
Q 009665          189 P-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQT------RPALPALERLIHSNDDEVLT  259 (529)
Q Consensus       189 ~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~------~~~l~~L~~ll~~~d~~v~~  259 (529)
                      . ..+-..+...++..++.+. .++.-.++..++..|.|+.-+...  ......      .-....++..+...+|-...
T Consensus       505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~  583 (743)
T COG5369         505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL  583 (743)
T ss_pred             cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence            3 2334556666788999998 788889999999999999774311  111111      23556677777777777777


Q ss_pred             HHHHHHHHhccCCchhHHHHHHh-CcHHHHHHhcCC-----------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCCh
Q 009665          260 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH-----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL  327 (529)
Q Consensus       260 ~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~-----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l  327 (529)
                      ..|..|.+++..++.....+.+. .++..+.++|..           ....+..+-....-++....+.......-.   
T Consensus       584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---  660 (743)
T COG5369         584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---  660 (743)
T ss_pred             hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---
Confidence            77899998887766555544443 445555554421           112333344444444444323222211100   


Q ss_pred             HHHHHHhc--cCCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665          328 PCLLDLLT--QNYKKSIKKEACWTISNITA---G------NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (529)
Q Consensus       328 ~~L~~lL~--~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  395 (529)
                      |.+=..=.  ...+.++-.+..|.+-|+.-   +      +.+.++.+.+.|+-+.+..+...+++.||+.+-.+|.++
T Consensus       661 p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         661 PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            11111111  11145677888898888654   2      225566677888878777777777889999999999886

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=4.4e-05  Score=77.19  Aligned_cols=360  Identities=13%  Similarity=0.155  Sum_probs=230.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      -+|..++.+.+.+.+++...-..|...+....+   ..+.   -|..+-+-|++++ +-+|..|+++|..|--       
T Consensus        72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd---LALL---SIntfQk~L~DpN-~LiRasALRvlSsIRv-------  137 (968)
T KOG1060|consen   72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD---LALL---SINTFQKALKDPN-QLIRASALRVLSSIRV-------  137 (968)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC---ceee---eHHHHHhhhcCCc-HHHHHHHHHHHHhcch-------
Confidence            578888888899998888877777776644311   1111   3678888999998 8999888888766654       


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      .++..=++-.+-++..++.+-||..|+.+|-.+..-.++.++.+      ..++..|..+.++-+...|+.++-..|-+.
T Consensus       138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL------~e~I~~LLaD~splVvgsAv~AF~evCPer  211 (968)
T KOG1060|consen  138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL------EEVIKKLLADRSPLVVGSAVMAFEEVCPER  211 (968)
T ss_pred             hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH------HHHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence            12211123344456667889999999999999987766655543      234444447788889999998888877543


Q ss_pred             CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC---Cchh----------------------HHHHHHh---C
Q 009665          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDK----------------------IQAVIEA---G  283 (529)
Q Consensus       232 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~---~~~~----------------------~~~~~~~---~  283 (529)
                          ...+.+-...+..+|.+-++.-+..++..|...+..   .+..                      .....+.   -
T Consensus       212 ----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l  287 (968)
T KOG1060|consen  212 ----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL  287 (968)
T ss_pred             ----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence                445556666777777666666566666655544432   0000                      0000010   1


Q ss_pred             cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009665          284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  363 (529)
Q Consensus       284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  363 (529)
                      ++...-.+|.+.++.+...++++...++-.+.  .     ..++..|+.+|.+.  +.++......+..++...+.... 
T Consensus       288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~-  357 (968)
T KOG1060|consen  288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRSN--REVQYVVLQNIATISIKRPTLFE-  357 (968)
T ss_pred             HHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhh-
Confidence            23334455677888899999999998886432  2     24567888888764  56777777777777765555332 


Q ss_pred             HHHcCCHHHHHHHH--hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          364 IIEAGIIGPLVNLL--LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       364 l~~~~~l~~L~~~l--~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                             |.+-...  .++...++..=+..|.+++...+.   ..     ++.-|..++++.|..+...+..+|+.....
T Consensus       358 -------P~lKsFfv~ssDp~~vk~lKleiLs~La~esni---~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~  422 (968)
T KOG1060|consen  358 -------PHLKSFFVRSSDPTQVKILKLEILSNLANESNI---SE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASR  422 (968)
T ss_pred             -------hhhhceEeecCCHHHHHHHHHHHHHHHhhhccH---HH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence                   3333322  223446777778888998875432   22     456677888888888888888888876544


Q ss_pred             hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCC
Q 009665          442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED  497 (529)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  497 (529)
                      ....                 ..-++.-|..|..+.+.-|-..|...|.++...+.
T Consensus       423 ~~sv-----------------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  423 IGSV-----------------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             hCch-----------------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence            3221                 12235556666666677777777777777766543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=1.8e-05  Score=82.39  Aligned_cols=256  Identities=16%  Similarity=0.146  Sum_probs=167.0

Q ss_pred             ChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHH
Q 009665          200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  279 (529)
Q Consensus       200 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~  279 (529)
                      +++.+-.+. .+.+..++...+..+..+.--.  +....+....|.+...+++.++.|+.+..+.+..+-...+..-...
T Consensus       399 ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~--~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~  475 (759)
T KOG0211|consen  399 ILPEVQVLV-LDNALHVRSALASVITGLSPIL--PKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST  475 (759)
T ss_pred             hhHHHHHHH-hcccchHHHHHhccccccCccC--CcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence            334443333 4555555555554444433222  2233446778888889999999999999988876654333222234


Q ss_pred             HHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CC
Q 009665          280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GN  357 (529)
Q Consensus       280 ~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~  357 (529)
                      .....++.+..+-....+.++...++.+..++....   ..+++...-+.+...+.+. ...+++.|+..+.-++.  |.
T Consensus       476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~  551 (759)
T KOG0211|consen  476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS  551 (759)
T ss_pred             hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc
Confidence            445677888888877788899999999888876433   2344444556666666665 67899999988888876  31


Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHH
Q 009665          358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  437 (529)
Q Consensus       358 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~  437 (529)
                      .-.+     ...++.++.....++...|...+.++.-++...+.+.    ....+++.+.++..++.+.|+..++..|..
T Consensus       552 ~w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~  622 (759)
T KOG0211|consen  552 EWAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPK  622 (759)
T ss_pred             chhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHH
Confidence            1111     2267777777777778899998888888776544333    334578899999999999999999999998


Q ss_pred             HHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHH
Q 009665          438 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV  486 (529)
Q Consensus       438 l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~  486 (529)
                      +...-....               .+.-..+.++.|..+++.+++-+|.
T Consensus       623 i~~~L~~~~---------------~~~~v~pll~~L~~d~~~dvr~~a~  656 (759)
T KOG0211|consen  623 ILKLLDESV---------------RDEEVLPLLETLSSDQELDVRYRAI  656 (759)
T ss_pred             HHhhcchHH---------------HHHHHHHHHHHhccCcccchhHHHH
Confidence            876543211               1222344555555566666655543

>TIGR02270 conserved hypothetical protein

Probab=98.54  E-value=2.8e-05  Score=76.28  Aligned_cols=241  Identities=17%  Similarity=0.050  Sum_probs=165.6

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        72 ~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      .++.++..|. .+++.+...++..+..   .+ .+        ..+..|+..|.+.+ +.++..++.+|+.+-.      
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence            4566777774 4556666655554432   11 11        13778888888887 7899999888876554      


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                           ....+.|+.+|.+.++.++..++.+++..-.            ...+.+...| ++.++.++..++.+|..+...
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                 2346778888888888898888877776321            1345677777 688889999999999887653


Q ss_pred             CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                                ..++.|...+.+.++.|+..+++++..+..  .         ..+..+..+...........+..+++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      456667788888899999999999877643  1         2234444444444444444444444443


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 009665          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (529)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~  390 (529)
                        +.+         ..++.|..+++++   .++..++++++.+...  .         .++.|+..+.+.  .++..|.+
T Consensus       237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~p--~---------av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGDV--E---------AAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCCc--c---------hHHHHHHHhcCc--HHHHHHHH
Confidence              222         4678888888776   3899999999977543  2         678888888643  49999999


Q ss_pred             HHHHHhc
Q 009665          391 AISNATS  397 (529)
Q Consensus       391 aL~nl~~  397 (529)
                      ++..++-
T Consensus       290 A~~~ItG  296 (410)
T TIGR02270       290 AFSLITG  296 (410)
T ss_pred             HHHHhhC
Confidence            9999975

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=4.5e-05  Score=76.71  Aligned_cols=317  Identities=15%  Similarity=0.097  Sum_probs=162.8

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q 009665          122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  201 (529)
Q Consensus       122 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i  201 (529)
                      =|++++ +-+|-..++.|+.+-.  ++...     ..+|.+...|.+.+.-||.+|+.++..|.....   ..+  .++-
T Consensus       107 DLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDap  173 (948)
T KOG1058|consen  107 DLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAP  173 (948)
T ss_pred             hccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChH
Confidence            355666 6677777777766654  33332     456888889999999999999999998864421   111  1233


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc---cCChHHHHHHHHHHHHhccCCchhHHH
Q 009665          202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQA  278 (529)
Q Consensus       202 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~L~~l~~~~~~~~~~  278 (529)
                      +.+-..|....|+..+++|+..|...-..          .++..|...+.   +-++..+......|...+...+...  
T Consensus       174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~--  241 (948)
T KOG1058|consen  174 ELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK--  241 (948)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh--
Confidence            34445555666788888877666543221          11222222111   1233344444444444443222211  


Q ss_pred             HHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH---------------------------------HHHHhcC
Q 009665          279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT---------------------------------QCIINHQ  325 (529)
Q Consensus       279 ~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~---------------------------------~~~~~~~  325 (529)
                         ...+..+..+|.+.++.++..|..+|-+++.......                                 ..+++ |
T Consensus       242 ---~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-~  317 (948)
T KOG1058|consen  242 ---ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-G  317 (948)
T ss_pred             ---hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-H
Confidence               1234444555544444444444444433332111000                                 00111 2


Q ss_pred             ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH-HHhcC------ChhHHHHHHHHHHHHhcC
Q 009665          326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN-LLLNA------EFEIKKEAAWAISNATSG  398 (529)
Q Consensus       326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~-~l~~~------~~~v~~~a~~aL~nl~~~  398 (529)
                      .+--++.+|.++ +-++|+.+......++..  .++..+++     .|-. +.+..      ....|.....++..++..
T Consensus       318 l~mDvLrvLss~-dldvr~Ktldi~ldLvss--rNvediv~-----~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~  389 (948)
T KOG1058|consen  318 LIMDVLRVLSSP-DLDVRSKTLDIALDLVSS--RNVEDIVQ-----FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK  389 (948)
T ss_pred             HHHHHHHHcCcc-cccHHHHHHHHHHhhhhh--ccHHHHHH-----HHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence            233344445555 556666655555555432  11111111     1111 11111      223456666666666554


Q ss_pred             CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCC
Q 009665          399 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN  478 (529)
Q Consensus       399 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~  478 (529)
                      - ++..     ..+++.|++.+.+.++..-..++..+...++..++..           ...++..     ++.+-.-.+
T Consensus       390 F-p~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-----------~~ii~~l-----~~~~~~irS  447 (948)
T KOG1058|consen  390 F-PEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-----------ASIIEKL-----LETFPQIRS  447 (948)
T ss_pred             C-hHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-----------HHHHHHH-----HHhhhhhcc
Confidence            2 2332     2367888888888888777777777776665544321           2222221     333334456


Q ss_pred             HHHHHHHHHHHHhhCCCCC
Q 009665          479 TEIYEKAVKILETYWVEED  497 (529)
Q Consensus       479 ~~v~~~a~~il~~~~~~~~  497 (529)
                      .+++.-|.||+..|..++.
T Consensus       448 ~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  448 SKICRGALWILGEYCEGLS  466 (948)
T ss_pred             cccchhHHHHHHHHHhhhH
Confidence            7889999999999998876

>TIGR02270 conserved hypothetical protein

Probab=98.51  E-value=3.6e-05  Score=75.55  Aligned_cols=244  Identities=18%  Similarity=0.064  Sum_probs=170.1

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (529)
                      ..++.++..|.....+.+...+++++.....  +.         ++..|+..|.+.++.++..++.+|+.+-..      
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~------  116 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQED--AL---------DLRSVLAVLQAGPEGLCAGIQAALGWLGGR------  116 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--hH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCch------
Confidence            3678888888543337777766655532221  11         378899999999999999999999876321      


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~  273 (529)
                           .....|+.++ .+.++.++..++.++...-           ....+.+..+|.+.++.|+..++.+|+.+...  
T Consensus       117 -----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       117 -----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             -----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                 2456788888 7778888888887766521           22456788889999999999999999998643  


Q ss_pred             hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009665          274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (529)
Q Consensus       274 ~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  353 (529)
                               ..++.|...+.+.++.|+..|+..++.+..  +         ..++.+..+.... .......+..++...
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence                     345667778999999999999999987743  3         1234455544443 333443333344333


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHH
Q 009665          354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  433 (529)
Q Consensus       354 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~  433 (529)
                        +.+         ..++.|..++.++.  ++..++++++.+-..            ..++.|+..+.+.  .+...+.+
T Consensus       237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCc--HHHHHHHH
Confidence              323         26778888887644  999999999987542            3577788877644  38899999


Q ss_pred             HHHHHHHh
Q 009665          434 GLENILKA  441 (529)
Q Consensus       434 aL~~l~~~  441 (529)
                      ++..|.-.
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99988754

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=0.00077  Score=67.69  Aligned_cols=327  Identities=17%  Similarity=0.140  Sum_probs=196.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      .-+-++.|+++--....-+-..+.-++... .+..+.     ++..+.+=|.+.+ +....-|+.|++|+.+  -+.+..
T Consensus        76 hmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea  146 (938)
T KOG1077|consen   76 HMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEA  146 (938)
T ss_pred             hHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHH
Confidence            344556666554444444444554444322 222222     3345555566666 7889999999999986  444444


Q ss_pred             HHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          153 VIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      +.     +-+-++|.++  ..-++..++.+|..+...+|+   .+-..+....++.+| .+.+..+...+...+..|+..
T Consensus       147 ~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~  217 (938)
T KOG1077|consen  147 FA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKK  217 (938)
T ss_pred             hh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHc
Confidence            43     2233666553  366888888888888877654   333335678889998 666677777777777777776


Q ss_pred             CCCCchhhhhchHHHHHHhhc-------------cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--
Q 009665          231 KPQPLFEQTRPALPALERLIH-------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--  295 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~-------------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--  295 (529)
                      .|..........+..|..+..             -+.|.++..+++.|.++-.-.+.... ..-..+++.++...+.+  
T Consensus       218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~  296 (938)
T KOG1077|consen  218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPK  296 (938)
T ss_pred             CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCcc
Confidence            644433333344444443332             13577888888888887432221111 11113444444444421  


Q ss_pred             Ccc-----hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009665          296 SPS-----VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII  370 (529)
Q Consensus       296 ~~~-----v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l  370 (529)
                      ...     .....+.-.-+++.+-+..-..+.  ..+..|-++|.+. ...+|.-|...++.++.. ...+..+-.+  .
T Consensus       297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss-~~s~davK~h--~  370 (938)
T KOG1077|consen  297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASS-EFSIDAVKKH--Q  370 (938)
T ss_pred             ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhc-cchHHHHHHH--H
Confidence            111     222233333444443333322222  4677888999888 888999999999998885 2223333333  6


Q ss_pred             HHHHHHHh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHH
Q 009665          371 GPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL  432 (529)
Q Consensus       371 ~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l  432 (529)
                      ..++..|+ ..|..+|+.|+..|..++...   ..+.     ++.-|+++|.+.|+.+++-..
T Consensus       371 d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----IV~elLqYL~tAd~sireeiv  425 (938)
T KOG1077|consen  371 DTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----IVAELLQYLETADYSIREEIV  425 (938)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----HHHHHHHHHhhcchHHHHHHH
Confidence            67888888 569999999999999998754   4343     455677788888887776543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.49  E-value=0.00039  Score=71.23  Aligned_cols=380  Identities=15%  Similarity=0.117  Sum_probs=229.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh--hhHHhhcCChHHHHHhhcCCC------ChHHHHHHHHHHHHHh
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNIA  143 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~~i~~g~i~~Li~lL~~~~------~~~v~~~a~~~L~~l~  143 (529)
                      .+.+.+..|++.+-+.++.++..+.+++...+...  .+.+.+.=+.+.|-++|.++.      ....+.-|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            57888999999888888999999999987643212  234666666778888887732      1456788888999998


Q ss_pred             cCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHH
Q 009665          144 SGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW  222 (529)
Q Consensus       144 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  222 (529)
                      . +++....---.+-||.|+..+.+.+. .+...|+.+|..++.. +..+..+.+.|.++.|...+.+  .+.....++.
T Consensus        86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~  161 (543)
T PF05536_consen   86 R-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEIALN  161 (543)
T ss_pred             C-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHH
Confidence            8 55543221122579999999988666 9999999999999944 5568899999999999999844  4455677777


Q ss_pred             HHhhhhcCCCC----CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchh-HH----HHHHhCcHHHHHHhcC
Q 009665          223 TLSNFCRGKPQ----PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQ----AVIEAGVCPRLVELLR  293 (529)
Q Consensus       223 ~L~~l~~~~~~----~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~-~~----~~~~~~~~~~L~~lL~  293 (529)
                      ++.+++.....    ........+++.+...+.......+..+|..|..+-...+.. ..    .-.-..+...+..+|.
T Consensus       162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~  241 (543)
T PF05536_consen  162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ  241 (543)
T ss_pred             HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence            77777665421    122333466677777777777777888899998887655211 11    1111234445555665


Q ss_pred             C-CCcchHHHHHHHHHHhhcCChhhHHHHH-hc-----CChHHHHHH---------------hccCCchhH--HHHHHH-
Q 009665          294 H-PSPSVLIPALRTVGNIVTGDDMQTQCII-NH-----QALPCLLDL---------------LTQNYKKSI--KKEACW-  348 (529)
Q Consensus       294 ~-~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~-----~~l~~L~~l---------------L~~~~~~~v--~~~a~~-  348 (529)
                      + ..+.-|.+++...+.+.....  .+.++ +.     .++-.++++               .+.+.....  +-.+|+ 
T Consensus       242 sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~  319 (543)
T PF05536_consen  242 SRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFS  319 (543)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHH
Confidence            5 345667777777777764311  11111 11     111111111               111100111  111222 


Q ss_pred             ----HHHHHhc--------CCHHHHHHHHH--cCCHHHHHHHHhcC------ChhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 009665          349 ----TISNITA--------GNVNQIQAIIE--AGIIGPLVNLLLNA------EFEIKKEAAWAISNATSGGSNEQIKFLV  408 (529)
Q Consensus       349 ----~L~nl~~--------~~~~~~~~l~~--~~~l~~L~~~l~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~  408 (529)
                          .+..++.        -.++....+..  .+.+..++++|.+-      ++.....++.+|+......+....+.+ 
T Consensus       320 ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v-  398 (543)
T PF05536_consen  320 ILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV-  398 (543)
T ss_pred             HHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH-
Confidence                1122222        13444444443  34566666666642      333666788899888876554444443 


Q ss_pred             HcCChHHHHhccCCCCH----------HHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHH
Q 009665          409 SQGCIKPLCDLLNCPDP----------RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN  472 (529)
Q Consensus       409 ~~~~l~~L~~lL~~~~~----------~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~  472 (529)
                       .+.++.|+++......          +.+...+=+|..+..-.             ..+..+...||.+.+.+
T Consensus       399 -~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~-------------~gr~~l~~~~g~~~l~~  458 (543)
T PF05536_consen  399 -YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEE-------------EGRKILLSNGGWKLLCD  458 (543)
T ss_pred             -HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccH-------------HHHHHHHhCCcHHHHHH
Confidence             3688899988864322          34555555666554322             23666666777666554

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=0.00015  Score=65.70  Aligned_cols=275  Identities=14%  Similarity=0.136  Sum_probs=176.7

Q ss_pred             HHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH
Q 009665          202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  281 (529)
Q Consensus       202 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  281 (529)
                      ..++.++ .+.++.++..|..-+..++......-.......++.+.+++...++  ...+..++.|++....-+ ..+++
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~-~~ll~   81 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR-KKLLQ   81 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH-HHHHH
Confidence            3567777 7788999999998888887762111122234567778888887766  778899999999875433 44555


Q ss_pred             hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH------hcCChHHHHHHhccCCchhH-HHHHHHHHHHHh
Q 009665          282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII------NHQALPCLLDLLTQNYKKSI-KKEACWTISNIT  354 (529)
Q Consensus       282 ~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~------~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~  354 (529)
                      . ++..++..+.++........+..+.|++...+.......      +.+.+.....+..++.+... -...+.+++|++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            4 888888999998888999999999999986554433322      24555555666655533211 245567778887


Q ss_pred             cCCHHHHHHHHHcCCHH-HHHHHHhcCChhHHHH-HHHHHHHHhcCCC---------HHHHHHHHH-------------c
Q 009665          355 AGNVNQIQAIIEAGIIG-PLVNLLLNAEFEIKKE-AAWAISNATSGGS---------NEQIKFLVS-------------Q  410 (529)
Q Consensus       355 ~~~~~~~~~l~~~~~l~-~L~~~l~~~~~~v~~~-a~~aL~nl~~~~~---------~~~~~~l~~-------------~  410 (529)
                      .. +..+..+.....++ ..+.-+.+.+..+|+. .+..|.|++....         .....++.-             .
T Consensus       161 ~~-~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~  239 (353)
T KOG2973|consen  161 QF-EAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA  239 (353)
T ss_pred             hh-hhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence            75 44455555433222 1122233345556544 6677788775431         111111110             1


Q ss_pred             CChHHHHhccC-----CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHH-hcCCCHHHHHH
Q 009665          411 GCIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEIYEK  484 (529)
Q Consensus       411 ~~l~~L~~lL~-----~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L-~~~~~~~v~~~  484 (529)
                      +...-| ++|.     .+|+.++...+++|..|+.-..             .++.+.+.|+...+..| ...+++++...
T Consensus       240 ~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~-------------GRe~lR~kgvYpilRElhk~e~ded~~~a  305 (353)
T KOG2973|consen  240 KLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA-------------GREVLRSKGVYPILRELHKWEEDEDIREA  305 (353)
T ss_pred             cCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH-------------hHHHHHhcCchHHHHHHhcCCCcHHHHHH
Confidence            112222 4443     4678999999999987764332             48889999999999998 45688999998


Q ss_pred             HHHHHHhhCCCC
Q 009665          485 AVKILETYWVEE  496 (529)
Q Consensus       485 a~~il~~~~~~~  496 (529)
                      +.++.+-....+
T Consensus       306 ce~vvq~Lv~~e  317 (353)
T KOG2973|consen  306 CEQVVQMLVRLE  317 (353)
T ss_pred             HHHHHHHHHhcc
Confidence            888887777643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=0.00012  Score=76.22  Aligned_cols=304  Identities=12%  Similarity=0.179  Sum_probs=198.1

Q ss_pred             hhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009665           69 KLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  147 (529)
Q Consensus        69 ~~~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~  147 (529)
                      -++.++-++..|. ..++.++..|+..+..+.+.  .+....+...|.+..|+.+|.+.  |..|..++.+|+.+++ ++
T Consensus      1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NG 1843 (2235)
T ss_pred             hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-Cc
Confidence            4566777777777 57788999999999887654  46788889999999999999775  6899999999999999 77


Q ss_pred             hhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---chhHHHHHh----------cCChHHHHHHhccc-h
Q 009665          148 ENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS---PKCRDLVLS----------NGALMPLLAQFNEH-A  212 (529)
Q Consensus       148 ~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~----------~~~i~~l~~~l~~~-~  212 (529)
                      +......+.|++..+..++.. .+...|.+++..++.+..+.   |..+-.++.          .+.-+..+..+... .
T Consensus      1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred             HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence            777778888888887776644 67899999999999997543   222111111          01123334444211 1


Q ss_pred             hH------HHHHHHHHHHhhhhc----CC---C--------------------------------------CCchhhhhc
Q 009665          213 KL------SMLRNATWTLSNFCR----GK---P--------------------------------------QPLFEQTRP  241 (529)
Q Consensus       213 ~~------~~~~~a~~~L~~l~~----~~---~--------------------------------------~~~~~~~~~  241 (529)
                      ++      ..+......+..+..    ..   |                                      ........+
T Consensus      1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred             CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence            11      112222222222211    00   0                                      001122244


Q ss_pred             hHHHHHHhhccCCh--HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHH
Q 009665          242 ALPALERLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  319 (529)
Q Consensus       242 ~l~~L~~ll~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~  319 (529)
                      ++..+..++..+++  ....-.-.++..|....+...+.+-..|.+|.++..+.+.+..+-..|++.|..++. +..+..
T Consensus      2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCCD 2082 (2235)
T ss_pred             HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHHH
Confidence            55555666654432  222223333444444444445555556999999999988888888999999999987 445566


Q ss_pred             HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcC
Q 009665          320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA  380 (529)
Q Consensus       320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~  380 (529)
                      .......+..++..+...  +...--|+.+|..+.. ...+.....++.|++|.|+.+|+..
T Consensus      2083 AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            666667777788888654  2334477788877765 4456666777899999999999764

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=0.00079  Score=67.61  Aligned_cols=301  Identities=14%  Similarity=0.139  Sum_probs=176.4

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009665          119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  198 (529)
Q Consensus       119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  198 (529)
                      -+++|+++..++ +.-.--.+.-+...+.+..+.+     +..+..=|.+.++.....|+.+++|+-+.  +.++.+.  
T Consensus        79 aV~LLss~kysE-KqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--  148 (938)
T KOG1077|consen   79 AVNLLSSNKYSE-KQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--  148 (938)
T ss_pred             HHHHhhcCCccH-HHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--
Confidence            457777665222 2222222223333333333332     34555566677888889999999998532  2333322  


Q ss_pred             CChHHHHHHhcc-chhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHH
Q 009665          199 GALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  277 (529)
Q Consensus       199 ~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~  277 (529)
                         ..+-++|.. +...-++..++.+|..|.+..|  +.....+-...++.+|.+.+-.|...+...+..|+...++...
T Consensus       149 ---~DI~KlLvS~~~~~~vkqkaALclL~L~r~sp--Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk  223 (938)
T KOG1077|consen  149 ---DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSP--DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK  223 (938)
T ss_pred             ---hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCc--cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence               223355533 3355677888888888887743  3333345667889999988888888888888888866554433


Q ss_pred             HHHHhCcHHHHHHhcC-------------CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhH-
Q 009665          278 AVIEAGVCPRLVELLR-------------HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSI-  342 (529)
Q Consensus       278 ~~~~~~~~~~L~~lL~-------------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v-  342 (529)
                      ..+. -.+..|..+..             -+.|-+....++.|.++-...+.....-+ ..+++.++...+.+. ...+ 
T Consensus       224 ~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l-~evl~~iLnk~~~~~~~k~vq  301 (938)
T KOG1077|consen  224 TCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL-NEVLERILNKAQEPPKSKKVQ  301 (938)
T ss_pred             hhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH-HHHHHHHHhccccCccccchH
Confidence            1111 12222222221             14566788888888888554443332211 134444544444221 1222 


Q ss_pred             ----HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009665          343 ----KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  418 (529)
Q Consensus       343 ----~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  418 (529)
                          +....+-.-+++.+-+..-..+..  .+..|.+++.+.++.+|--|...++.++....  ....+. . -.+.++.
T Consensus       302 ~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK-~-h~d~Ii~  375 (938)
T KOG1077|consen  302 HSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVK-K-HQDTIIN  375 (938)
T ss_pred             hhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHH-H-HHHHHHH
Confidence                222333333444421111112222  67789999999999999999999999998632  222222 2 2677888


Q ss_pred             ccC-CCCHHHHHHHHHHHHHHHHhh
Q 009665          419 LLN-CPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       419 lL~-~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      .|+ ..|..++..+++.|+.++..+
T Consensus       376 sLkterDvSirrravDLLY~mcD~~  400 (938)
T KOG1077|consen  376 SLKTERDVSIRRRAVDLLYAMCDVS  400 (938)
T ss_pred             HhccccchHHHHHHHHHHHHHhchh
Confidence            888 789999999999999998765

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=4.4e-05  Score=69.02  Aligned_cols=270  Identities=15%  Similarity=0.125  Sum_probs=166.4

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009665          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (529)
Q Consensus       116 i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (529)
                      ...++.++.+.+ |.++..|+..+..++..   .-+.+.  +...++.+.+++....+  .+.|+.++.|++.+. ..++
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHH
Confidence            346789999999 99999999999999884   111222  23467888888887555  788999999999765 4677


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh--h-----hchHHHHHHhhccCC--hHHHHHHHHH
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ--T-----RPALPALERLIHSND--DEVLTDACWA  264 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~-----~~~l~~L~~ll~~~d--~~v~~~a~~~  264 (529)
                      .++.. .+..++..+ .+........+|.+|+|+++.........  .     .+.+.....+....-  ..-..+....
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            77665 566666666 55556678889999999998762221111  1     223333333333221  2335566777


Q ss_pred             HHHhccCCchhHHHHHHhCc--HHHHHHhcCCCCcchH-HHHHHHHHHhhcCChhhHHHHHh--cCChHHHH--------
Q 009665          265 LSYLSDGTNDKIQAVIEAGV--CPRLVELLRHPSPSVL-IPALRTVGNIVTGDDMQTQCIIN--HQALPCLL--------  331 (529)
Q Consensus       265 L~~l~~~~~~~~~~~~~~~~--~~~L~~lL~~~~~~v~-~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~--------  331 (529)
                      +++++.....+ ..+.+...  ...+..+-. .+..+| ...+.+|-|+|.....+- .+++  .+++|.|+        
T Consensus       156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccc
Confidence            78888765544 22333322  222333333 344444 447788888876544332 2332  12233222        


Q ss_pred             -------------HHhcc----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHH
Q 009665          332 -------------DLLTQ----NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAIS  393 (529)
Q Consensus       332 -------------~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~  393 (529)
                                   +.|..    ..++.+|+...-+|.-+|+. ...++.+...|+.|.+-.+-+.. +++++ .+|.-+.
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vv  310 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVV  310 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHH
Confidence                         33321    12678999999999999886 56677788888888777766655 55554 4666666


Q ss_pred             HHhcCC
Q 009665          394 NATSGG  399 (529)
Q Consensus       394 nl~~~~  399 (529)
                      ++....
T Consensus       311 q~Lv~~  316 (353)
T KOG2973|consen  311 QMLVRL  316 (353)
T ss_pred             HHHHhc
Confidence            665543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=7.4e-05  Score=68.05  Aligned_cols=302  Identities=14%  Similarity=0.123  Sum_probs=197.1

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHH--HHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009665           69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLSRDDFPQLQFEAAWALTNIASGT  146 (529)
Q Consensus        69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~L--i~lL~~~~~~~v~~~a~~~L~~l~~~~  146 (529)
                      +-+.++.++.++..+|.++-..|...+..+...  ......+.++.....+  .++-...+ .-.|......+..+.+-+
T Consensus       126 NaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiS  202 (524)
T KOG4413|consen  126 NAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSIS  202 (524)
T ss_pred             hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcC
Confidence            346688999999999999999999999887643  2344555555555433  22323333 567888889999999989


Q ss_pred             hhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHH
Q 009665          147 SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTL  224 (529)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L  224 (529)
                      ++....+-.+|.+..|..-+.. .+.-++..|+.....++...- .++.+.+.|.+..+...+... ++|--.-.++...
T Consensus       203 pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgf  281 (524)
T KOG4413|consen  203 PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGF  281 (524)
T ss_pred             HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH
Confidence            9999999999999999988887 778889999999999985432 477888889888888888422 2332222233333


Q ss_pred             hhhhc----CCCCC--chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCc--HHHHHHhcCC-C
Q 009665          225 SNFCR----GKPQP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRLVELLRH-P  295 (529)
Q Consensus       225 ~~l~~----~~~~~--~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~L~~lL~~-~  295 (529)
                      ..+..    .+-.+  .-....-.+.....++..+|++.+..++.+++.+..+... .+.+.+.|-  ...++.-..+ +
T Consensus       282 gkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqn  360 (524)
T KOG4413|consen  282 GKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQN  360 (524)
T ss_pred             HHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccc
Confidence            32222    22011  1111123344556777789999999999999999876543 355555442  3334333333 3


Q ss_pred             CcchHHHHHHHHHHhhcCCh-----------h--hHHHHH-------hcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          296 SPSVLIPALRTVGNIVTGDD-----------M--QTQCII-------NHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       296 ~~~v~~~al~~L~~l~~~~~-----------~--~~~~~~-------~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      ...-+..++++|.+++....           .  .+..++       +..-+..+..+++.+ .++++..+..++..++.
T Consensus       361 ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  361 AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAA  439 (524)
T ss_pred             ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHc
Confidence            33456778889988875311           0  111111       113355677788888 89999999999999998


Q ss_pred             CCHHHHHHHHHcCCHHHHHHH
Q 009665          356 GNVNQIQAIIEAGIIGPLVNL  376 (529)
Q Consensus       356 ~~~~~~~~l~~~~~l~~L~~~  376 (529)
                      ..-.....+-..+++..+.+.
T Consensus       440 qPWalkeifakeefieiVtDa  460 (524)
T KOG4413|consen  440 QPWALKEIFAKEEFIEIVTDA  460 (524)
T ss_pred             CcHHHHHHhcCccceeeeccc
Confidence            744444334456666665543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=2.7e-05  Score=75.80  Aligned_cols=317  Identities=11%  Similarity=0.080  Sum_probs=197.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+++++.++...|..++..|+..+.+++...+...  ...-..+...+.++..+.+ ..++ .++..+-.+..+-.....
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd-~~V~-~~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSD-QNVR-GGAELLDRLIKDIVTESA  160 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCc-cccc-cHHHHHHHHHHHhccccc
Confidence            47888999999999999999988888765432111  1122335566777766665 4444 344444444431111111


Q ss_pred             -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          152 -VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       152 -~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                       .+-=.+.+|.|-.-+...++..|...+.-|..+-... . .+.+- -..+++.|+.+| .+.+.+++..+-.+++++..
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-D-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-c-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence             1111244555555555567778777776666654332 2 23321 223567778888 67777887777777776655


Q ss_pred             CC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcc-hHHHHHHH-
Q 009665          230 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS-VLIPALRT-  306 (529)
Q Consensus       230 ~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-v~~~al~~-  306 (529)
                      .- ..+........++.++..+.++++.++..|+.-|..+..-.... -...-+|++..+++++.+..+. +...+..+ 
T Consensus       238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence            43 33333355678899999999999999988877777776554432 2234458888888888876653 44433322 


Q ss_pred             --HHHhhcCChhhHHHHHhc-CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009665          307 --VGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (529)
Q Consensus       307 --L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~  383 (529)
                        +..++.... ..+. ++. .+++.+.+.+.+. ..+.|.++..-+..+-...|.+. ......+++.|+.-|++.+.+
T Consensus       317 ~~l~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~  392 (675)
T KOG0212|consen  317 GLLLKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDE  392 (675)
T ss_pred             HHHHHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhH
Confidence              222222111 1111 222 3567788888887 78888888765555555434433 223456899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC
Q 009665          384 IKKEAAWAISNATSGGS  400 (529)
Q Consensus       384 v~~~a~~aL~nl~~~~~  400 (529)
                      |...++..+.+++....
T Consensus       393 vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  393 VVLLALSLLASICSSSN  409 (675)
T ss_pred             HHHHHHHHHHHHhcCcc
Confidence            99999999999998643

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.38  E-value=9e-05  Score=77.35  Aligned_cols=387  Identities=12%  Similarity=0.097  Sum_probs=254.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  153 (529)
                      +..-+..+..++.++..++..+..+++..    .......++++.+.++..+.. ..+++.|...+.++...-....  -
T Consensus       240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d  312 (759)
T KOG0211|consen  240 PIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--D  312 (759)
T ss_pred             HHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--h
Confidence            33333445677888888888888876543    225567789999999999888 7899999998888876221111  1


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC-
Q 009665          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-  232 (529)
Q Consensus       154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-  232 (529)
                      ...-+.+.+++...+++..++.........++..-.   ........+++...++ .....+....++.-...++.... 
T Consensus       313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~  388 (759)
T KOG0211|consen  313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNA  388 (759)
T ss_pred             hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCc
Confidence            223456888888888888888777766666542211   1111222356666666 44445555555544444544432 


Q ss_pred             -CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009665          233 -QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (529)
Q Consensus       233 -~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~  311 (529)
                       .........++|.+..+..+.+..++...+..+..+..-.+.  ...+ ....+.+...+.+..+.++....+.+..+-
T Consensus       389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~  465 (759)
T KOG0211|consen  389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLE  465 (759)
T ss_pred             ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence             122223355678888888888999988888777776533220  1011 145677777888888899988888777766


Q ss_pred             cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHH
Q 009665          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  391 (529)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~a  391 (529)
                      ..++...........++.+..+-... .++++.+..+.+-.++....   ..+.+...-+.+...+.+....+++.|+..
T Consensus       466 ~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~  541 (759)
T KOG0211|consen  466 EVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARN  541 (759)
T ss_pred             hccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            55554444445557788888888777 88999999998888876311   233343355566666777778999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHH
Q 009665          392 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE  471 (529)
Q Consensus       392 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~  471 (529)
                      +..++..-+.+..    ....++.++.....++...+..++.++..+.....+.               +.....++.+.
T Consensus       542 l~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e---------------i~~~~Llp~~~  602 (759)
T KOG0211|consen  542 LPALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE---------------ITCEDLLPVFL  602 (759)
T ss_pred             hHHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH---------------HHHHHHhHHHH
Confidence            9988864332221    1224566666666667788888888888776654321               22344578889


Q ss_pred             HHhcCCCHHHHHHHHHHHHhhCCCCC
Q 009665          472 NLQSHDNTEIYEKAVKILETYWVEED  497 (529)
Q Consensus       472 ~L~~~~~~~v~~~a~~il~~~~~~~~  497 (529)
                      ++..++.++|+-.+.+.+.++...-.
T Consensus       603 ~l~~D~vanVR~nvak~L~~i~~~L~  628 (759)
T KOG0211|consen  603 DLVKDPVANVRINVAKHLPKILKLLD  628 (759)
T ss_pred             HhccCCchhhhhhHHHHHHHHHhhcc
Confidence            99999999999999888888776543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.38  E-value=0.00014  Score=70.50  Aligned_cols=313  Identities=16%  Similarity=0.088  Sum_probs=193.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch-hHHHHHHHHHHHhhhhcCCCCCchhh
Q 009665          160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGKPQPLFEQ  238 (529)
Q Consensus       160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~  238 (529)
                      +.+..++-+++.+++..+.+++..+..+... -..+.+.+.-.-++.-|..+. ...-+.+|+..+..+...... ....
T Consensus        28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~~  105 (371)
T PF14664_consen   28 ERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKEI  105 (371)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-cccC
Confidence            3344344445599999999999998877654 455566665555555564433 344477888888877766321 1223


Q ss_pred             hhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH
Q 009665          239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT  318 (529)
Q Consensus       239 ~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~  318 (529)
                      -.+++..++.+..+.++..+..|+.+|+.++-.++   +.++..|++..|+..+.++...+....+.++-.+.. .+..+
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR  181 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTR  181 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccchh
Confidence            46788899999999999999999999999997765   557888999999999987665677778888888876 34444


Q ss_pred             HHHHhcCChHHHHHHhccC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhcCChhHHHHHH
Q 009665          319 QCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAA  389 (529)
Q Consensus       319 ~~~~~~~~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~l~~L~~~l~~~~~~v~~~a~  389 (529)
                      +.+...--++.++.-+.+.      .+.  +.-..+..++..+.+.=+.......+. ..+..|++.|..+.+++|+...
T Consensus       182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il  261 (371)
T PF14664_consen  182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL  261 (371)
T ss_pred             hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence            4444333455555544332      022  233455566666665322211111121 4688899999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHH------HcCChHHHHhcc---CCCC---HHHHHHHHHHHHHHHHhhhhhhhcCCCCccchH
Q 009665          390 WAISNATSGGSNEQIKFLV------SQGCIKPLCDLL---NCPD---PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLF  457 (529)
Q Consensus       390 ~aL~nl~~~~~~~~~~~l~------~~~~l~~L~~lL---~~~~---~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~  457 (529)
                      ..+..+..-..+.....+.      ..+-...-.++.   ....   +.....-...+.+...               -.
T Consensus       262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a---------------Ll  326 (371)
T PF14664_consen  262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA---------------LL  326 (371)
T ss_pred             HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH---------------HH
Confidence            9999998755433222111      111110000000   0000   0000000011111110               12


Q ss_pred             HHHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhhC
Q 009665          458 AQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYW  493 (529)
Q Consensus       458 ~~~i~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~~  493 (529)
                      ...|-++|.++.|..+..+. ++.+..+|.-+|..++
T Consensus       327 l~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  327 LAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            44566799999999997666 8899999999988775

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=2.7e-05  Score=84.11  Aligned_cols=340  Identities=14%  Similarity=0.142  Sum_probs=203.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhc-CChhhH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSI-ERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENT  150 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~-~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~  150 (529)
                      ...+...+.+.++..|..++.-|..+... .+.+++.. .-..+...+..+|.+.+ +-.|..|.+-|+-+=. ++...+
T Consensus       820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l-~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k  897 (1702)
T KOG0915|consen  820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVL-MLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLK  897 (1702)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhh-ccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhH
Confidence            34555566789999988776555544432 22232222 22335578889998887 6777777765554332 123333


Q ss_pred             HHHHhCCChHHHHHhhCC---------CCHHHHH-------------HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 009665          151 RVVIDHGAVPIFVRLLSS---------PTDDVRE-------------QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  208 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~---------~~~~v~~-------------~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l  208 (529)
                      +.+     +..|+.-|..         ++.++.+             ..-.=|+|+|.+-.       +-+.+-.++++.
T Consensus       898 ~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LA  965 (1702)
T KOG0915|consen  898 KSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLA  965 (1702)
T ss_pred             HHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHh
Confidence            333     3444443321         1111111             11223445543321       111244566666


Q ss_pred             ccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHH
Q 009665          209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  288 (529)
Q Consensus       209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L  288 (529)
                      +.+.....+.-|+..+..++...-.........++|.|.+.=.+++..|+.........|...+...++.... .++.-|
T Consensus       966 nh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eL 1044 (1702)
T KOG0915|consen  966 NHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDEL 1044 (1702)
T ss_pred             hhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHH
Confidence            4444556666677777777766544445566778888888877889999888777777777765555554444 788888


Q ss_pred             HHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHH---HHHHHHHhc--C---CHHH
Q 009665          289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA---CWTISNITA--G---NVNQ  360 (529)
Q Consensus       289 ~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~--~---~~~~  360 (529)
                      +.-|.+..+.+|+.+|.+|..+..+.+.....-.-..++..+...+.+- ...+|+.|   +.+|+-++.  +   ++..
T Consensus      1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            8889999999999999999999998653221100113455556666665 56677654   556666554  1   1122


Q ss_pred             HHHHHHcCCHHHHHHH-HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHH
Q 009665          361 IQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  431 (529)
Q Consensus       361 ~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~  431 (529)
                      -+..++ .++|.|++- +.+.-.++|+.++..+..++...+.....++.  ..++.|++.+..-++.|..+.
T Consensus      1124 ~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1124 GKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred             HHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHH
Confidence            223333 266666652 11456789999999999999876654444432  468888888887777665543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.38  E-value=0.00032  Score=68.28  Aligned_cols=250  Identities=27%  Similarity=0.324  Sum_probs=172.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .++.+++.+.+.+..++..++..+..+-..            -.++.+..++.+.+ +.+|..|+.+|+.+-.  +    
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~----  104 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P----  104 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h----
Confidence            678889999999999999999997665432            37889999999999 9999999998887765  2    


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchh-----------HHHHHH
Q 009665          152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----------LSMLRN  219 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~-----------~~~~~~  219 (529)
                           ..++.|+.++. +++..+|..+.++|+.+-...           .+.+++..+.....           ..++..
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                 34788889888 589999999999999984321           36677777733221           123444


Q ss_pred             HHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcch
Q 009665          220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV  299 (529)
Q Consensus       220 a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v  299 (529)
                      +...+..+-.          ...++.+..++.+.+..++..+..+|+.+....         ..+.+.+...+.+++..+
T Consensus       169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence            4444443322          345667778888888888888888888877654         244567777888888888


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009665          300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  379 (529)
Q Consensus       300 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~  379 (529)
                      +..++..++.+-..           ...+.+...+... +..++..+...+..+  ...         .....+...+.+
T Consensus       230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~~  286 (335)
T COG1413         230 RKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLID  286 (335)
T ss_pred             HHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhhc
Confidence            88888888877542           2345566677666 555555554444411  101         123445555666


Q ss_pred             CChhHHHHHHHHHHHHhcC
Q 009665          380 AEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       380 ~~~~v~~~a~~aL~nl~~~  398 (529)
                      ....++..+..++..+...
T Consensus       287 ~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         287 EANAVRLEAALALGQIGQE  305 (335)
T ss_pred             chhhHHHHHHHHHHhhccc
Confidence            6677777777777776654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=2.1e-05  Score=77.86  Aligned_cols=221  Identities=14%  Similarity=0.128  Sum_probs=148.8

Q ss_pred             HHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC---c--hhHHH
Q 009665          204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT---N--DKIQA  278 (529)
Q Consensus       204 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~---~--~~~~~  278 (529)
                      +..+. .+.|..++..|+.+|..|..+.     ..-..+....++++.+.+..|+..|+..+.-.....   .  +..+.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 6778888888888888877743     122345567788899999999998866555444221   1  11111


Q ss_pred             HHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH--hc-
Q 009665          279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI--TA-  355 (529)
Q Consensus       279 ~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~-  355 (529)
                      -....++..++..+.+.+..|+..|...||-+-.-+++.....++..++..+-..=      .-.+......++-  ++ 
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr------~ahkrpk~l~s~GewSsG  350 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKR------TAHKRPKALYSSGEWSSG  350 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhh------hcccchHHHHhcCCcccC
Confidence            12226788899999999999999999999999877776666555544333221111      0111111222222  11 


Q ss_pred             ----------CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCH
Q 009665          356 ----------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP  425 (529)
Q Consensus       356 ----------~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~  425 (529)
                                ...+.-..++.+|..-.++.-+++.-.+||+.|...++.++... |.+...     .+..|++++.++..
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~  424 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIE  424 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHH
Confidence                      11223345778888899999998888899999999999999853 344333     57889999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 009665          426 RIVTVCLEGLENILKAG  442 (529)
Q Consensus       426 ~v~~~~l~aL~~l~~~~  442 (529)
                      .|+..++.+|..|....
T Consensus       425 ~VRL~ai~aL~~Is~~l  441 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVHL  441 (823)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999998887653

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.34  E-value=1.3e-05  Score=63.00  Aligned_cols=154  Identities=10%  Similarity=0.051  Sum_probs=122.3

Q ss_pred             ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHH
Q 009665          326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK  405 (529)
Q Consensus       326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~  405 (529)
                      .+..|+.-.+...+.+.++....-|+|++.. |.+...+.+.+++..+++.+...+..++..++.+|||++.  ++...+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            3455555555555788888888889999886 7778889999999999999999999999999999999998  668889


Q ss_pred             HHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHH
Q 009665          406 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  485 (529)
Q Consensus       406 ~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a  485 (529)
                      .+.+.+.++.++..+.++...++..++.++..+...+..            ....+-.--.++.+++...+.+.+.+..|
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt------------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa  161 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT------------ERDELLSPAVVRTVQRWRESKSHDERNLA  161 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc------------hhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999999998888888888777765433322            24445555667778887777777778888


Q ss_pred             HHHHHhhCC
Q 009665          486 VKILETYWV  494 (529)
Q Consensus       486 ~~il~~~~~  494 (529)
                      ...++++..
T Consensus       162 ~~fl~~~~~  170 (173)
T KOG4646|consen  162 SAFLDKHVH  170 (173)
T ss_pred             HHHHHhhcc
Confidence            888877654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.32  E-value=3.8e-05  Score=81.15  Aligned_cols=295  Identities=16%  Similarity=0.122  Sum_probs=191.8

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC----C
Q 009665          158 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----P  232 (529)
Q Consensus       158 ~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~  232 (529)
                      +++.+...+++ ...+.+..|+..|..++.....   ...-..++|.++.++ .+....++..|+.+|..+...-    +
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence            35666666666 5677888899999888854321   111224788899998 7788899999998888765543    3


Q ss_pred             CCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009665          233 QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (529)
Q Consensus       233 ~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~  311 (529)
                      ........-++|.|..++.+ ....++..-+.+|..|+....    .+.+.+.-.....++..++.+       ....  
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse-------t~~~--  565 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE-------TAPE--  565 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc-------cccc--
Confidence            33344557788999888887 456678888888888875422    122222222222234444433       1111  


Q ss_pred             cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHH
Q 009665          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  389 (529)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~  389 (529)
                      ...+...+.+.+ .+-..+..+|.++ ++-||...+..|+-||.  | .+.    -+.=+++.|+..|++.|+.+|..-.
T Consensus       566 ~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG-k~k----sND~iLshLiTfLNDkDw~LR~aFf  638 (1431)
T KOG1240|consen  566 QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG-KEK----SNDVILSHLITFLNDKDWRLRGAFF  638 (1431)
T ss_pred             cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh-hcc----cccchHHHHHHHhcCccHHHHHHHH
Confidence            111223333332 4556677888887 78888888888887775  2 110    1122689999999999999998777


Q ss_pred             HHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHH
Q 009665          390 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  469 (529)
Q Consensus       390 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~  469 (529)
                      ..|.-++..-....    ++..+++.|.+-|.+.++-|+..++++|..|++.+--.+              ..-...++.
T Consensus       639 dsI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K--------------~~v~~i~~~  700 (1431)
T KOG1240|consen  639 DSIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK--------------PAVKDILQD  700 (1431)
T ss_pred             hhccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch--------------HHHHHHHHh
Confidence            76665554322221    234578899999999999999999999999998764322              111223455


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          470 IENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       470 l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      +.-|..|+|.=|+..+..+|.....
T Consensus       701 v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  701 VLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             hhhheeCchHHHHHHHHHHHHHHHh
Confidence            6677899999999888877765543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.27  E-value=1.9e-06  Score=54.52  Aligned_cols=41  Identities=44%  Similarity=0.890  Sum_probs=38.2

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009665          146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG  186 (529)
Q Consensus       146 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  186 (529)
                      +++++..+++.|++|.|+.+|.+++.++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.25  E-value=0.00014  Score=70.66  Aligned_cols=319  Identities=15%  Similarity=0.109  Sum_probs=198.2

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchh
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKC  191 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~  191 (529)
                      ...+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|..  .+..=|++|+..+..+.......
T Consensus        25 ~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   25 FFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            34555655566666 8999999999999888 67777788887766666666655  34556889999998887542211


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~  271 (529)
                      .  .+..+++..++.+. .+.+...+..+..+|..++-.+  +......+++..|.+.+.++..++...++.++.++.+.
T Consensus       103 ~--~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~  177 (371)
T PF14664_consen  103 K--EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS  177 (371)
T ss_pred             c--cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence            1  13556788888888 6677789999999999998874  55566688999999888876666888999999999988


Q ss_pred             CchhHHHHHHhCcHHHHHHhcCCC-------Cc--chHHHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHHhccCCchh
Q 009665          272 TNDKIQAVIEAGVCPRLVELLRHP-------SP--SVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKS  341 (529)
Q Consensus       272 ~~~~~~~~~~~~~~~~L~~lL~~~-------~~--~v~~~al~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~  341 (529)
                      +..+ +.+...--++.++.-..+.       +.  .....+..++..+...-+.......+ ..++..|+..|..+ .++
T Consensus       178 p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~  255 (371)
T PF14664_consen  178 PRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPE  255 (371)
T ss_pred             cchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHH
Confidence            7543 2222212233343333222       12  23445556666665544433222222 25788899999998 888


Q ss_pred             HHHHHHHHHHHHhcC-CHHHH------HHHHHcCCHHHHHHHH---hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Q 009665          342 IKKEACWTISNITAG-NVNQI------QAIIEAGIIGPLVNLL---LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG  411 (529)
Q Consensus       342 v~~~a~~~L~nl~~~-~~~~~------~~l~~~~~l~~L~~~l---~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  411 (529)
                      +|+.....+..+..- .+.-.      ..+...+.+..-.++-   ........... .-=.++..+--.-....|++.|
T Consensus       256 ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll~ili~~g  334 (371)
T PF14664_consen  256 IRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLLAILIEAG  334 (371)
T ss_pred             HHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHHHHHHHcC
Confidence            999999999888872 12111      1111111110000100   00000000000 0001111110112344567899


Q ss_pred             ChHHHHhccCCC-CHHHHHHHHHHHHHHHHhh
Q 009665          412 CIKPLCDLLNCP-DPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       412 ~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~  442 (529)
                      +++.|+++.... ++.+...+.-.|..++...
T Consensus       335 L~~~L~~li~~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  335 LLEALVELIESSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            999999999876 7788888888888887654

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.23  E-value=0.0014  Score=65.66  Aligned_cols=346  Identities=15%  Similarity=0.126  Sum_probs=197.7

Q ss_pred             HHHHHhhcCCCH---HHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           74 PAMVAGVWSDDR---NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        74 ~~l~~~L~s~~~---~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      |.++..|.+.+.   ......+.+|..+....  +-.+.++ ..++..+-..++.+.+.+....++.+|..+.....+..
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~   78 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTSP--QILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK   78 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence            566667765544   45566777777765321  2222222 24555555555443346677778888888766332222


Q ss_pred             -----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---------
Q 009665          151 -----RVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---------  209 (529)
Q Consensus       151 -----~~~~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---------  209 (529)
                           ....+..+++.+......     .  +..+.+.+...+..+...-+.-+..-    .+..+..+..         
T Consensus        79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence                 223344477888776633     1  24566666666666664433222221    1233333331         


Q ss_pred             --cc----hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccC--CchhHHHHH
Q 009665          210 --EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDG--TNDKIQAVI  280 (529)
Q Consensus       210 --~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~--~~~~~~~~~  280 (529)
                        ..    .......-...+++.+-.   ..........+..++.+.. ..++..+..++.+++-++..  .++...   
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRK---DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCc---ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence              00    111122222233333322   2222233456777777655 44688899999999988865  222222   


Q ss_pred             HhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhc----CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          281 EAGVCPRLVELL-RHPSPSVLIPALRTVGNIVT----GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       281 ~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                        .++..+..-. .......+..++.++..++.    .......     ..+..++.+|.+   +++...++.++.-+..
T Consensus       229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~  298 (415)
T PF12460_consen  229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLS  298 (415)
T ss_pred             --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence              2333333333 33344445555555544432    2222221     345667888866   4678888888888877


Q ss_pred             CCHH--------HHHHHHHc----CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009665          356 GNVN--------QIQAIIEA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  423 (529)
Q Consensus       356 ~~~~--------~~~~l~~~----~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~  423 (529)
                      ..++        .++.+.+.    .++|.|++.....+...|.....||+++..+........ --..+++.|++.|+.+
T Consensus       299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~  377 (415)
T PF12460_consen  299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP  377 (415)
T ss_pred             CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence            5332        23333332    267888888887777799999999999999765443222 1235799999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhh
Q 009665          424 DPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       424 ~~~v~~~~l~aL~~l~~~~~  443 (529)
                      |++++..++.+|..++...+
T Consensus       378 ~~~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  378 DADVLLSSLETLKMILEEAP  397 (415)
T ss_pred             CHHHHHHHHHHHHHHHHcCH
Confidence            99999999999999987653

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.21  E-value=3.1e-06  Score=53.53  Aligned_cols=41  Identities=46%  Similarity=0.690  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       357 ~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                      ++++++.+++.|++|.|+.+|.+++++++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47888999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.20  E-value=6.9e-05  Score=79.26  Aligned_cols=270  Identities=14%  Similarity=0.138  Sum_probs=175.6

Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC---hh
Q 009665           73 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---SE  148 (529)
Q Consensus        73 l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~---~~  148 (529)
                      ++.+..++++ ...+.+..|+..|..+.....    .+..-..++|.++.++.++. .++|..|+..|+.+...-   +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4455555553 345677888888887764432    22222358999999999998 999999999998877522   22


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHH---HHhc------------------------CC
Q 009665          149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDL---VLSN------------------------GA  200 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~---~~~~------------------------~~  200 (529)
                      .-..+...-++|.|-.++.+ ....+|..-+..|+.+|...-.+...   +...                        ..
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~  578 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT  578 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence            22233344567888888877 44555655556666555211000000   0000                        01


Q ss_pred             hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009665          201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  280 (529)
Q Consensus       201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  280 (529)
                      +...+.-|..+.++-+++..+..|.-||...  .......-+++.|+.+|++.|..++..-...|..++-.-..+   -+
T Consensus       579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~  653 (1431)
T KOG1240|consen  579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SV  653 (1431)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eH
Confidence            2222222224555677777777777777542  111122457789999999999999998888888776432211   23


Q ss_pred             HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       281 ~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      +..++|.|.+-|.++.+.|...|++++.-++...--....+.  .+++.+..+|.++ +.-+|..++..|..++.
T Consensus       654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            447889999999999999999999999999875433333333  4677788889999 88899999999988776

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=5.5e-05  Score=75.10  Aligned_cols=253  Identities=15%  Similarity=0.141  Sum_probs=163.0

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHH---hhhhcCC---CCC
Q 009665          161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL---SNFCRGK---PQP  234 (529)
Q Consensus       161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L---~~l~~~~---~~~  234 (529)
                      -|..+..+.+..++.+|+.+|..+... ......     .....+.++ .+.+..++..|..++   +|.+-..   ...
T Consensus       202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  202 GLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            366677777778888888877777652 222122     234456666 667778888775544   4554221   122


Q ss_pred             chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC-
Q 009665          235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-  313 (529)
Q Consensus       235 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~-  313 (529)
                      .......++..+...+.+-.-.|+..+..+|+.+...+.+.+...++..++..+-.--.   ..-+-..+..=|-.+.| 
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~---ahkrpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT---AHKRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh---cccchHHHHhcCCcccCc
Confidence            23344667778888888888899999999999988777766666666544442211110   00011111111211111 


Q ss_pred             ----------ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009665          314 ----------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (529)
Q Consensus       314 ----------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~  383 (529)
                                .++....++.+|....++.-|.++ -.+||++|+..++.++..+|....     ..+..|++++.+....
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV  425 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence                      234455678889999999999988 889999999999999997666432     2567899999998889


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHH
Q 009665          384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  436 (529)
Q Consensus       384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~  436 (529)
                      ||..|+.+|..++.+..       ++...++.++..|.+..++++......|.
T Consensus       426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999987532       12234556666666666666655444433

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.19  E-value=0.00011  Score=66.72  Aligned_cols=229  Identities=14%  Similarity=0.161  Sum_probs=155.1

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhC-CChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh-
Q 009665          122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS-  197 (529)
Q Consensus       122 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-  197 (529)
                      +++.-+ +-.+.-|+.|+.++.. .++.|...... ..-..++..++.  ...+++-+.+.+++-+.... .+.+.+-. 
T Consensus       157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~  233 (432)
T COG5231         157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKM  233 (432)
T ss_pred             HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence            333334 5678899999999998 67887776543 344567777766  56789999999998887543 34433222 


Q ss_pred             cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCc--hhhhhc-hHHHHHHhhc---cCChHHHHHHHHHHHHhccC
Q 009665          198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRP-ALPALERLIH---SNDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       198 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~-~l~~L~~ll~---~~d~~v~~~a~~~L~~l~~~  271 (529)
                      -..+..++.+........+.+-++..+.|++...|...  .....+ +.+. ++.|.   -.|++++.+.-..=+.+...
T Consensus       234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~-vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKC-VQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHH-HHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence            12456677777666788899999999999998543222  122233 4443 44443   23666654443332222211


Q ss_pred             Cc------------------------------hhHHHHHHh--CcHHHHHHhcCCCCcc-hHHHHHHHHHHhhcCChhhH
Q 009665          272 TN------------------------------DKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVTGDDMQT  318 (529)
Q Consensus       272 ~~------------------------------~~~~~~~~~--~~~~~L~~lL~~~~~~-v~~~al~~L~~l~~~~~~~~  318 (529)
                      ..                              .+...+.+.  .++..|.++++..++. ...-||.-++.++...++..
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~  392 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN  392 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence            00                              112223322  5788899999887776 56678999999999999999


Q ss_pred             HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       319 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      ..+.+.|+=..++.++.|+ +++|+-+|..++..+..
T Consensus       393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            9899999999999999999 99999999998876653

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.19  E-value=0.00032  Score=68.31  Aligned_cols=249  Identities=24%  Similarity=0.289  Sum_probs=170.9

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (529)
                      ..++.+++++.+.+ +.++..+++.++.+..           .-.++.+..++.+.+..+|..++.+|+.+-.  +    
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~----  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--P----  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--h----
Confidence            36788999999987 8999999999776664           1357999999999999999999999988732  2    


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCCh------------HHHHHH
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA  261 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~------------~v~~~a  261 (529)
                           ..++.++..+..+.+..++..+.++|..+-..          ..+..++..+.+...            .++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 15788999995578899999999999987554          235566666665542            244444


Q ss_pred             HHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchh
Q 009665          262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  341 (529)
Q Consensus       262 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  341 (529)
                      ...++.+...           ..++.+...+.+....++..|...|+.+....         ..+.+.+...+.++ +..
T Consensus       170 ~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            4444443221           34567777788877788888888888887754         23456677778777 888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009665          342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  421 (529)
Q Consensus       342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  421 (529)
                      +|..++.+++.+-..  .         .++.++..+...+..++..+..++...-   .         ......+...+.
T Consensus       229 vr~~~~~~l~~~~~~--~---------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~---------~~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE--E---------AVDALAKALEDEDVILALLAAAALGALD---L---------AEAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc--h---------hHHHHHHHHhccchHHHHHHHHHhcccC---c---------hhhHHHHHHHhh
Confidence            888888888877543  1         4456677777777777666665555110   0         012334444555


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 009665          422 CPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       422 ~~~~~v~~~~l~aL~~l~  439 (529)
                      +.+..++.....++..+.
T Consensus       286 ~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         286 DEANAVRLEAALALGQIG  303 (335)
T ss_pred             cchhhHHHHHHHHHHhhc
Confidence            556666655555555443

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.09  E-value=4.5e-05  Score=60.13  Aligned_cols=115  Identities=13%  Similarity=0.091  Sum_probs=97.9

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (529)
                      +.+..|+.-.+...+.+.+++...-|.|++- +|.+-..+.+..++..++..|..++..+.+.++..|+|+|.+.. ..+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence            3455566656555558889999999999998 78888899999999999999999999999999999999998865 578


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      .+.+.+.++.++..+ .++...+..+++.++..|+.+.
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            888999999999998 7777778888889999998775

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.08  E-value=0.00042  Score=63.06  Aligned_cols=237  Identities=17%  Similarity=0.159  Sum_probs=148.6

Q ss_pred             HHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHHHHhhcCChhhHHHHH
Q 009665          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCII  322 (529)
Q Consensus       245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~  322 (529)
                      .|-++++.-++-.+.-|..++.++......+.....+...-.++++++++  +...++...+.+++.++.. +...+ .+
T Consensus       153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aq-di  230 (432)
T COG5231         153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQ-DI  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHH-HH
Confidence            33445555566677788888888887665554444555566778888866  4567888899999888763 33332 22


Q ss_pred             h--cCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHH-HcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHh
Q 009665          323 N--HQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAII-EAGIIGPLVNLLLNA--EFEIKKEAAWAISNAT  396 (529)
Q Consensus       323 ~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~-~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~  396 (529)
                      +  ...+.-++.+.+.....+|-+-+|.++.|++.. ....+..+. ..++.+.+..++..+  |.+++...-..=..+.
T Consensus       231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1  134555666666554667888899999999983 234444444 344555544444443  5555433222222111


Q ss_pred             cCC-----------------------------CHHHHHHHHHc--CChHHHHhccCCCCHH-HHHHHHHHHHHHHHhhhh
Q 009665          397 SGG-----------------------------SNEQIKFLVSQ--GCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEA  444 (529)
Q Consensus       397 ~~~-----------------------------~~~~~~~l~~~--~~l~~L~~lL~~~~~~-v~~~~l~aL~~l~~~~~~  444 (529)
                      ...                             -...+..+...  .++..|..+++..++. ....|+.-|..++...+.
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE  390 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE  390 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence            100                             01233344433  3467788888876665 445566667777666543


Q ss_pred             hhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          445 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       445 ~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                                  ....+...|+-+.|-+|.+|++++|+-.|...+..+.+.
T Consensus       391 ------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         391 ------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             ------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence                        367788899999999999999999999999888877653

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.08  E-value=0.00014  Score=71.19  Aligned_cols=288  Identities=13%  Similarity=0.081  Sum_probs=168.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  153 (529)
                      |.|-..|++....+++++++.+..+....   .....++ ..+..|-.+|+++. ...|+.|+++|..++...|+...  
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~--  339 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS--  339 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee--
Confidence            44445566667888888888888865432   1112222 25667778888887 78899999999999985554321  


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009665          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  233 (529)
Q Consensus       154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  233 (529)
                       -++  +-+-.++.+.+..+...|+.+|..-  ...+.-+.+     +..+..++ .+.+...+..+..++..||...|.
T Consensus       340 -vcN--~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~  408 (898)
T COG5240         340 -VCN--KEVESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPS  408 (898)
T ss_pred             -ecC--hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcH
Confidence             111  3445566666666665555555442  222222222     22222333 333445555666677777766555


Q ss_pred             CchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009665          234 PLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (529)
Q Consensus       234 ~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~  312 (529)
                      .....    +..|...|. ...-+....+..+|+.+....++..+     .++..|+.++.+..  ...-++++|+-+..
T Consensus       409 k~~s~----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~  477 (898)
T COG5240         409 KKLSY----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGR  477 (898)
T ss_pred             HHHHH----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcc
Confidence            44433    334443333 45667788888888888877655444     34566777765532  23344555555544


Q ss_pred             CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 009665          313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  392 (529)
Q Consensus       313 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL  392 (529)
                      ..+....   -...+..+..-+--+ +.-+|..|+.+|+-++..-.+.   .....+...|-+++.+.|.++|..|..+|
T Consensus       478 EgP~a~~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l  550 (898)
T COG5240         478 EGPRAKT---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLL  550 (898)
T ss_pred             cCCCCCC---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            3332111   012234444444444 6789999999998887642211   11222455677889999999999999999


Q ss_pred             HHHhc
Q 009665          393 SNATS  397 (529)
Q Consensus       393 ~nl~~  397 (529)
                      .++-.
T Consensus       551 ~~~~~  555 (898)
T COG5240         551 RNMRL  555 (898)
T ss_pred             Hhhhh
Confidence            99853

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.07  E-value=8.5e-06  Score=55.52  Aligned_cols=55  Identities=22%  Similarity=0.552  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665          340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (529)
Q Consensus       340 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  395 (529)
                      +.+|..|+|+|++++...++....... .+++.|+.+|.++++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999999887887776554 4999999999999999999999999875

...

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.06  E-value=0.0012  Score=66.34  Aligned_cols=253  Identities=16%  Similarity=0.129  Sum_probs=163.4

Q ss_pred             hhhHHhhcCChHHHHHhh---------cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC-----CH
Q 009665          106 PINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----TD  171 (529)
Q Consensus       106 ~~~~~i~~g~i~~Li~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~  171 (529)
                      ....+.....+..|.++-         ....++.+..+|++||+|+...++..+..+++.|..+.++..|+..     +.
T Consensus        14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~   93 (446)
T PF10165_consen   14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS   93 (446)
T ss_pred             cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence            344455555556665554         2222389999999999999999999999999999999999999875     68


Q ss_pred             HHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHHHhcc----------------chhHHHHHHHHHHHhhhhcCCCCC
Q 009665          172 DVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNE----------------HAKLSMLRNATWTLSNFCRGKPQP  234 (529)
Q Consensus       172 ~v~~~a~~~L~nl~~~~~~~~~~~~~~-~~i~~l~~~l~~----------------~~~~~~~~~a~~~L~~l~~~~~~~  234 (529)
                      ++.-...+.|.-++...+..+..+.+. +++..++..|..                ..+......++.++.|+....+..
T Consensus        94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~  173 (446)
T PF10165_consen   94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS  173 (446)
T ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence            888888888888887666677665554 566666665531                024556777888888888776433


Q ss_pred             chhhh----hchHHHHHHhh---c--cCChHHHHHHHHHHHHhccCCchh-----------HHHHHHhCcHHHHHHhcCC
Q 009665          235 LFEQT----RPALPALERLI---H--SNDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELLRH  294 (529)
Q Consensus       235 ~~~~~----~~~l~~L~~ll---~--~~d~~v~~~a~~~L~~l~~~~~~~-----------~~~~~~~~~~~~L~~lL~~  294 (529)
                      .....    ..++..+..++   .  .+.......++.+|.++--.....           .........+..|+.+|..
T Consensus       174 ~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~  253 (446)
T PF10165_consen  174 VPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDK  253 (446)
T ss_pred             cchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHH
Confidence            32222    33444444442   1  123456777778887773111000           0001122456666666632


Q ss_pred             -----C---CcchHHHHHHHHHHhhcCChhhHHHHH----------------hcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665          295 -----P---SPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQNYKKSIKKEACWTI  350 (529)
Q Consensus       295 -----~---~~~v~~~al~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~~~~v~~~a~~~L  350 (529)
                           .   -.....+.+.+|.+++......++.+-                ...+-..|+.++.++ .+.+|..+...+
T Consensus       254 ~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaell  332 (446)
T PF10165_consen  254 RLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELL  332 (446)
T ss_pred             HHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHH
Confidence                 1   135778889999999987655444332                124556788888887 588888888887


Q ss_pred             HHHhcCCHH
Q 009665          351 SNITAGNVN  359 (529)
Q Consensus       351 ~nl~~~~~~  359 (529)
                      -.+|..+..
T Consensus       333 f~Lc~~d~~  341 (446)
T PF10165_consen  333 FVLCKEDAS  341 (446)
T ss_pred             HHHHhhhHH
Confidence            777765433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.02  E-value=0.011  Score=61.77  Aligned_cols=141  Identities=16%  Similarity=0.154  Sum_probs=109.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      -++.+++.+.+.|.+++...-..+.......   |...+.   .++.+.+=+++++ +.+|..|++.++.+=.  ++...
T Consensus        56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~---P~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~  126 (757)
T COG5096          56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK---PELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG  126 (757)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---HHHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence            4677888888888888888777777776543   333332   5778888899998 9999999999987765  33322


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                           .+++.+.+++.++++.||..|+.++.++..-++   +.+.+.|.+..+..++ .+.++.+.++|+.+|..+...
T Consensus       127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                 356899999999999999999999999986543   4566667777666666 888999999999999988665

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0028  Score=69.23  Aligned_cols=316  Identities=17%  Similarity=0.167  Sum_probs=178.6

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--h
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--C  191 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~  191 (529)
                      .+||.|.++=-+++ +.+|.....+...+..++....+... ..++.-|+.-+.+....+|+.++.+|..|....+.  .
T Consensus       998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen  998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred             HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence            47888888877887 88888877777777775444444443 35667777778888899999999999999976553  2


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHH---HHHHHhhhhcCC-----CCCchhhhhchHHHHHH-hhccCChHHHHHHH
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRN---ATWTLSNFCRGK-----PQPLFEQTRPALPALER-LIHSNDDEVLTDAC  262 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~---a~~~L~~l~~~~-----~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~  262 (529)
                      .+.+.+  ....+++.+ ++-...++..   ++.+++.+|-..     +.........++|.|+. .+-+.-++++..++
T Consensus      1076 ~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred             HHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence            222221  333344444 4444555554   445555555432     22233444566666652 22266789999999


Q ss_pred             HHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHH-HHHH----------HH-HhhcCChh--hHHHH-------
Q 009665          263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-ALRT----------VG-NIVTGDDM--QTQCI-------  321 (529)
Q Consensus       263 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~-al~~----------L~-~l~~~~~~--~~~~~-------  321 (529)
                      .++..|+......+....- .+++.|+...+.-++.+... +++.          +. +.+.+++-  ....+       
T Consensus      1153 ~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred             HHHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence            9999999877654332222 56666666666554444322 2332          11 11111110  00000       


Q ss_pred             HhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 009665          322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (529)
Q Consensus       322 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (529)
                      +=...+|.+.++++.+-.-..|..++..++-++.. ..+.. ... -.++..++..+.+.+..+++.-+.|.+.++....
T Consensus      1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-P~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-PYS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred             HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-cch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence            01134555556555442333444555555544431 01100 000 1145556666677788999999999999999888


Q ss_pred             HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          401 NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       401 ~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      +++.+.+++.    .+..++...++. ...++..+.+|....
T Consensus      1310 ~dq~qKLie~----~l~~~l~k~es~-~siscatis~Ian~s 1346 (1702)
T KOG0915|consen 1310 PDQMQKLIET----LLADLLGKDESL-KSISCATISNIANYS 1346 (1702)
T ss_pred             hHHHHHHHHH----HHHHHhccCCCc-cchhHHHHHHHHHhh
Confidence            8887776542    334444433321 144444555554443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.01  E-value=4.4e-05  Score=69.82  Aligned_cols=186  Identities=17%  Similarity=0.263  Sum_probs=117.5

Q ss_pred             CCCCcchHHHHHHHHHHhhcCC--hhhHHHHHh--cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009665          293 RHPSPSVLIPALRTVGNIVTGD--DMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  368 (529)
Q Consensus       293 ~~~~~~v~~~al~~L~~l~~~~--~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  368 (529)
                      .+.++..+..++..|..++.++  ......++.  ..++..+...+.+. ...+.+.||.++..++..........++. 
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~-   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADI-   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHH-
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHH-
Confidence            5678899999999999998876  222222221  15667777788777 78899999999999997433334444443 


Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN  447 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~  447 (529)
                      ++|.|+..+.++..-++..|..+|..++...+ ...   +    .+..+...+.+.++.++..++..+..++........
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~---~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK---I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H---H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH---H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            78999999999888999999999999998764 111   1    155677788899999999999999999876541110


Q ss_pred             cCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          448 MGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       448 ~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      .     .. ....+  ....+.+..+..+.+++|++.|..++..|+..
T Consensus       168 ~-----l~-~~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  168 V-----LQ-KSAFL--KQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             G-----G---HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             h-----hc-ccchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            0     00 01111  22356788889999999999998888877654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.00023  Score=71.65  Aligned_cols=159  Identities=19%  Similarity=0.232  Sum_probs=107.1

Q ss_pred             chHHHHHHhhccCChHHHHHHHHHHHH--hccCCchhHHHHHHhCcHHHHHHh-cCCCCcchHHHHHHHHHHhhcCChhh
Q 009665          241 PALPALERLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQ  317 (529)
Q Consensus       241 ~~l~~L~~ll~~~d~~v~~~a~~~L~~--l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~  317 (529)
                      ++=+.+-+++.+.|+-+|...+.++.-  ...+.         .+++..|+.. .++.+.+|++.|.-+||-++..++++
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence            344566677888888888877766542  22222         2567777777 57789999999999999999877643


Q ss_pred             HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       318 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                               ++..+.+|..++++.||..++.+|+-.|+|+-...       .+..|-.+..+...-||+.|+.+++-+..
T Consensus       590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence                     46778888777799999999999999998633211       23333334455566799999999988876


Q ss_pred             CCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009665          398 GGSNEQIKFLVSQGCIKPLCDLLNCPDPR  426 (529)
Q Consensus       398 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~  426 (529)
                      ..++..+...  .++.+.+.+.+.+.+.+
T Consensus       654 Q~t~~~~pkv--~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  654 QQTEQLCPKV--NGFRKQLEKVINDKHED  680 (929)
T ss_pred             hcccccCchH--HHHHHHHHHHhhhhhhH
Confidence            5443332221  23445555555554443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.00  E-value=4.7e-05  Score=58.18  Aligned_cols=95  Identities=18%  Similarity=0.307  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC
Q 009665          342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  421 (529)
Q Consensus       342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  421 (529)
                      .|+.+.++|+.++.+-+..+...++. +++.++..+.+++++||..||.+|.|++.....+...++.  .++..|..++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence            36788899998887655555555554 8999999999999999999999999999876656666554  48899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 009665          422 CPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       422 ~~~~~v~~~~l~aL~~l~~  440 (529)
                      ++|+.|+..+ +.|.++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999987665 66766654

>PF05536 Neurochondrin: Neurochondrin

Probab=97.99  E-value=0.0011  Score=67.97  Aligned_cols=236  Identities=18%  Similarity=0.160  Sum_probs=161.2

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhccc------hhHHHHHHHHHHHhhhhc
Q 009665          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEH------AKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~~~i~~l~~~l~~~------~~~~~~~~a~~~L~~l~~  229 (529)
                      +...+.+|++.+.+-+-.++..+.+++...+..   +..+.+.=+..-+-++|...      +....+.-++..|+.+|.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            556677888877777788888888888655432   23455555555556666421      345567778888888998


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCCh-HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~  308 (529)
                      ...........+-+|.++..+.+.+. ++...++.+|..++..+. ..+.+++.|.++.|++.+.+ .+.....|+.++.
T Consensus        87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~  164 (543)
T PF05536_consen   87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLLL  164 (543)
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence            65444455667899999999987776 999999999999996554 55779999999999999987 5567888999999


Q ss_pred             HhhcCChhhHHH---HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH-HHH----HHHcCCHHHHHHHHhcC
Q 009665          309 NIVTGDDMQTQC---IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-IQA----IIEAGIIGPLVNLLLNA  380 (529)
Q Consensus       309 ~l~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~----l~~~~~l~~L~~~l~~~  380 (529)
                      +++.........   -.-..+++.+...+... ....+-+++..|+.+....+.. ...    -.-..+...+..++.+.
T Consensus       165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr  243 (543)
T PF05536_consen  165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR  243 (543)
T ss_pred             HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence            988754421100   00113455566666655 5667888999999988754211 111    11223566677777776


Q ss_pred             -ChhHHHHHHHHHHHHhc
Q 009665          381 -EFEIKKEAAWAISNATS  397 (529)
Q Consensus       381 -~~~v~~~a~~aL~nl~~  397 (529)
                       .+.-|..++.....+..
T Consensus       244 ~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  244 LTPSQRDPALNLAASLLD  261 (543)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence             56667777766666654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.98  E-value=0.00012  Score=67.05  Aligned_cols=186  Identities=18%  Similarity=0.145  Sum_probs=120.3

Q ss_pred             ccCChHHHHHHHHHHHHhccCC--chhHHHHHHh--CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCC
Q 009665          251 HSNDDEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA  326 (529)
Q Consensus       251 ~~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  326 (529)
                      .+.+.+.+..++..|..++.+.  ......+...  .++..+...+.+....+...|+.++..++..........++ .+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence            4567888999999998887654  2222222221  56677778888888889999999999999865555554443 67


Q ss_pred             hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC--HHHH
Q 009665          327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQI  404 (529)
Q Consensus       327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~--~~~~  404 (529)
                      +|.|+..+.++ ...++..|..+|..++...+... .+    .++.+...+.+.++.+|..++..+..++....  ....
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~-~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP-KI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH-HH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            88999999888 88899999999999998644111 11    25666777888899999999999999987644  1111


Q ss_pred             H-HHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009665          405 K-FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       405 ~-~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~  443 (529)
                      . ...-..+++.+..++.+++++|+..+-.++..+....+
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            1 10113467889999999999999999999998876544

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.0045  Score=65.50  Aligned_cols=260  Identities=14%  Similarity=0.122  Sum_probs=161.3

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhH
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR  192 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~  192 (529)
                      +++..|+..+++.+ ..++-.|+..++.++...|..   ++ ..++...+.++.. ++...-..++.+|+.++..+--.-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            57778888888888 799999999999999866622   11 1334555565544 345666689999999986543222


Q ss_pred             HHHHhcCChHHHHHHhcc-------chhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHH-HhhccCChHHHHHHHH
Q 009665          193 DLVLSNGALMPLLAQFNE-------HAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALE-RLIHSNDDEVLTDACW  263 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~-~ll~~~d~~v~~~a~~  263 (529)
                      ..+.  .+++.++.-|..       .....++..||.+++.+++.. +.........+.+.|+ ..+-+.+-.++..|..
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            2222  245556655531       234578899999999998876 3222233344444333 3444666777888888


Q ss_pred             HHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH-hccCCchhH
Q 009665          264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSI  342 (529)
Q Consensus       264 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v  342 (529)
                      ++-...-...+. .     .+++ |+...+.-....+..+...+..-....+..+..+++     .++.. +.|= +..+
T Consensus       494 AlqE~VGR~~n~-p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i  560 (1133)
T KOG1943|consen  494 ALQENVGRQGNF-P-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI  560 (1133)
T ss_pred             HHHHHhccCCCC-C-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence            877554221110 0     1111 112222223344556666666666666666655543     22222 5555 8899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                      |..++|+|.+++...|+.    .....+|.+++.....+...+.-+..+.+.++.
T Consensus       561 relaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  561 RELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            999999999987765553    344678889988888888888776666666654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.0039  Score=59.47  Aligned_cols=225  Identities=12%  Similarity=0.158  Sum_probs=158.9

Q ss_pred             hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC---------hhhHHHHHhCCChHHHHHhhCCCCH------
Q 009665          107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---------SENTRVVIDHGAVPIFVRLLSSPTD------  171 (529)
Q Consensus       107 ~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~~~g~i~~L~~lL~~~~~------  171 (529)
                      ...+++.++++.|+.+|.+.+ .++....+..|..++..+         ....+.+++.++++.|++.+..-++      
T Consensus       118 Yp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea  196 (536)
T KOG2734|consen  118 YPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEA  196 (536)
T ss_pred             HHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhh
Confidence            446788999999999999998 899999999999998633         1345567788999999998876333      


Q ss_pred             HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCC-CCchhhhhchHHHHHHh
Q 009665          172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERL  249 (529)
Q Consensus       172 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~l  249 (529)
                      .-...++..+-|+....+.+...+.+.|.+..|+..+... .-.....++...++-+..+.. ......--.++..+++-
T Consensus       197 ~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~  276 (536)
T KOG2734|consen  197 DGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQ  276 (536)
T ss_pred             hhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhh
Confidence            3345667788888888888888888999999988866433 334456677788887777653 22222223455555554


Q ss_pred             hc----c----C-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh--hhH
Q 009665          250 IH----S----N-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQT  318 (529)
Q Consensus       250 l~----~----~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~  318 (529)
                      +.    +    . ..+...+...+||.+......+ ..++...++....-+++. ....+..++++|-.+..+.+  ..+
T Consensus       277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C  354 (536)
T KOG2734|consen  277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNC  354 (536)
T ss_pred             cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHH
Confidence            43    1    1 3567888888888887776544 556666666666555655 44567789999999988776  556


Q ss_pred             HHHHhcCChHHHHHHh
Q 009665          319 QCIINHQALPCLLDLL  334 (529)
Q Consensus       319 ~~~~~~~~l~~L~~lL  334 (529)
                      ..+++..++..++.+.
T Consensus       355 ~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  355 NKFVEILGLRTIFPLF  370 (536)
T ss_pred             HHHHHHHhHHHHHHHH
Confidence            6667777777666654

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.0079  Score=63.20  Aligned_cols=321  Identities=14%  Similarity=0.139  Sum_probs=189.0

Q ss_pred             CChHHHHHhhc------CC-CChHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009665          114 GVVPRFIEFLS------RD-DFPQLQFEAAWALTNIASGT--SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV  184 (529)
Q Consensus       114 g~i~~Li~lL~------~~-~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  184 (529)
                      |+++.+++.|.      .+ +++.-+.-|++.++++++--  +..-...++.=+++.+...++++..-+|..|+|.++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            56667777776      22 23667888889998888510  11111222333467777788899999999999999999


Q ss_pred             hCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC---chhhhhchHHHHHHhhccCChHHHHHH
Q 009665          185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSNDDEVLTDA  261 (529)
Q Consensus       185 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~l~~L~~ll~~~d~~v~~~a  261 (529)
                      +...  +.+...-..++....+.|..+.+..++..|+.+|..+..+.+..   ....+.+++..|+++.+.-+.+....+
T Consensus       490 ~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             Hhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            8433  22232333467777788856778899999999999998886332   233455666667777776665555555


Q ss_pred             HHHH-HHhccCCchhHHHHHHhCcHHHHHHhcCC---CCc---chHHHHHHHHHHhh---cCChhhH--HHHHhcCChHH
Q 009665          262 CWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---PSP---SVLIPALRTVGNIV---TGDDMQT--QCIINHQALPC  329 (529)
Q Consensus       262 ~~~L-~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~~~---~v~~~al~~L~~l~---~~~~~~~--~~~~~~~~l~~  329 (529)
                      +..+ +..+..-......+.. .+.....+++..   .++   .-...|.++|..+.   ..-+...  -.-++..+++.
T Consensus       568 me~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v  646 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV  646 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5544 3333322222222222 445556666653   122   22333444444333   2211111  11234466777


Q ss_pred             HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHH-
Q 009665          330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-  408 (529)
Q Consensus       330 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-  408 (529)
                      +-.+|++. -.++-.+++..+.+++...++.--.+.  ++++.+.+.+.....+.-....-+|.|+...+.+.....-. 
T Consensus       647 i~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y  723 (1010)
T KOG1991|consen  647 IGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDY  723 (1010)
T ss_pred             HHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchH
Confidence            77788777 778888888888888775333222222  26788888888887888889999999999887654322110 


Q ss_pred             HcCChHHHHhccCC---CCHHHHHHHHHHHHHHHHh
Q 009665          409 SQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       409 ~~~~l~~L~~lL~~---~~~~v~~~~l~aL~~l~~~  441 (529)
                      ..-+...+..++.+   .|.+. ..++..+.-++..
T Consensus       724 ~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL~  758 (1010)
T KOG1991|consen  724 LQILLEIIKKVLTSENGEDSDC-ESACKLLEVIILN  758 (1010)
T ss_pred             HHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHHH
Confidence            01122233334443   23333 4456666666543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.87  E-value=3.9e-05  Score=58.27  Aligned_cols=87  Identities=32%  Similarity=0.518  Sum_probs=70.7

Q ss_pred             HHHHHHhh-ccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHH
Q 009665          243 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI  321 (529)
Q Consensus       243 l~~L~~ll-~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~  321 (529)
                      +|.|++.+ .++++.++..++++|+.+..   .        .+++.|+.++.++++.++..|+++|+.+..         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD---P--------EAIPALIELLKDEDPMVRRAAARALGRIGD---------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---H--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---H--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence            57888888 78899999999999995421   1        457899999999999999999999998842         


Q ss_pred             HhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          322 INHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       322 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                        ...++.|..++.++.+..+|..|+++|+
T Consensus        61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 --PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              2478889999988746677999998885

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.85  E-value=4.5e-05  Score=57.88  Aligned_cols=87  Identities=28%  Similarity=0.443  Sum_probs=69.4

Q ss_pred             hHHHHHhh-cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009665          116 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (529)
Q Consensus       116 i~~Li~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (529)
                      ||.|++.| ++++ +.+|..++++|+.+..  +         .+++.|+.++.++++.+|..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 6666 9999999999995532  2         34799999999999999999999999983         


Q ss_pred             HHhcCChHHHHHHhccchhHHHHHHHHHHHh
Q 009665          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS  225 (529)
Q Consensus       195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  225 (529)
                        ....++.|..++.++.+..++..+.++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12378889999966667777888888774

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.84  E-value=0.0079  Score=59.36  Aligned_cols=308  Identities=14%  Similarity=0.146  Sum_probs=177.1

Q ss_pred             HHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhH
Q 009665          135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL  214 (529)
Q Consensus       135 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~  214 (529)
                      ..++...+...+++....+     .|.|-..+++.-+-+.-.++++++.++..+-.  ..+.. ..+..|-.+| .....
T Consensus       247 lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv  317 (898)
T COG5240         247 LVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRV  317 (898)
T ss_pred             hHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchH
Confidence            3344445555455554444     36677777776677888888888888754411  11111 1344455555 66777


Q ss_pred             HHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009665          215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  294 (529)
Q Consensus       215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  294 (529)
                      ..+-.|..+|..|+...|.....    +-+-+-.++.+.+..+...|+.+|..-  +.++.+..++.  .++.++.-+++
T Consensus       318 ~~rFsA~Riln~lam~~P~kv~v----cN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~SD  389 (898)
T COG5240         318 VLRFSAMRILNQLAMKYPQKVSV----CNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDMSD  389 (898)
T ss_pred             HHHHHHHHHHHHHHhhCCceeee----cChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhhcc
Confidence            88889999999998876544332    234455666677777777777776543  33344443432  34445555555


Q ss_pred             CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 009665          295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV  374 (529)
Q Consensus       295 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~  374 (529)
                      +-..+...|++.|+...-   ....     ..+..|...|.....-+.++.++.+|+.+....|+....     .+..|+
T Consensus       390 ~FKiI~ida~rsLsl~Fp---~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC  456 (898)
T COG5240         390 GFKIIAIDALRSLSLLFP---SKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLC  456 (898)
T ss_pred             CceEEeHHHHHHHHhhCc---HHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHH
Confidence            555566666666666543   2211     245666666655436778888888888888766665443     345677


Q ss_pred             HHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCcc
Q 009665          375 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV  454 (529)
Q Consensus       375 ~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~  454 (529)
                      ..+.+-+  .-+-+...|+-+-..+....-+    ...+.++..-+--++.-++..++.||..+.-.....         
T Consensus       457 ~fIEDce--y~~I~vrIL~iLG~EgP~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---------  521 (898)
T COG5240         457 TFIEDCE--YHQITVRILGILGREGPRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---------  521 (898)
T ss_pred             HHHhhcc--hhHHHHHHHHHhcccCCCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---------
Confidence            7776532  2234445555444332100000    011223333333456678888888887663221110         


Q ss_pred             chHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665          455 NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  493 (529)
Q Consensus       455 ~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  493 (529)
                            +........+.+..++.+.+|+++|.-.++.+-
T Consensus       522 ------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         522 ------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             ------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence                  111223445778888999999999988887664

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.027  Score=59.41  Aligned_cols=358  Identities=14%  Similarity=0.127  Sum_probs=197.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhc-CCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      +.++-.++|+---+|..|++.+..+.+.+-..+   ..-..++....+.|. +.+ -.++.+|+-+|..+.+..+.....
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~---~~l~~ale~t~~~l~~d~~-lPV~VeAalALq~fI~~~~~~~e~  540 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDP---NNLSEALELTHNCLLNDNE-LPVRVEAALALQSFISNQEQADEK  540 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHhccCCCh---HHHHHHHHHHHHHhccCCc-CchhhHHHHHHHHHHhcchhhhhh
Confidence            333444567777889999999999875431111   111234455566666 444 789999999999998855544333


Q ss_pred             HHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc----c-hhHHHHHHHHHHH
Q 009665          153 VID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----H-AKLSMLRNATWTL  224 (529)
Q Consensus       153 ~~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~----~-~~~~~~~~a~~~L  224 (529)
                      +..  .+++..|+.+.+. +++.+...-=..++..+..-..+...+. .+....+.+++..    + .+.+-...|.++|
T Consensus       541 ~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL  619 (1010)
T KOG1991|consen  541 VSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGIL  619 (1010)
T ss_pred             HhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence            332  2455566666665 3333333333344444433222222222 2345566666642    1 1222233344444


Q ss_pred             hhhhc---C--C-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcc
Q 009665          225 SNFCR---G--K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS  298 (529)
Q Consensus       225 ~~l~~---~--~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~  298 (529)
                      ..+..   .  . |.........++|.+-.+|.+.-.++-..++..+.+++....+....+.  |+++.+.+.+....-.
T Consensus       620 ~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~d  697 (1010)
T KOG1991|consen  620 RTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGID  697 (1010)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHH
Confidence            43322   1  1 2222223355667777777777788888888888887755433322232  6788888888887777


Q ss_pred             hHHHHHHHHHHhhcCChhhHHHHHhc-----CChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 009665          299 VLIPALRTVGNIVTGDDMQTQCIINH-----QALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  372 (529)
Q Consensus       299 v~~~al~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~  372 (529)
                      ......-+|.|+++....   .+.+.     -++..+..+|.+.. ...-...||..+.-+.-......+..+.. ++..
T Consensus       698 yf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~~  773 (1010)
T KOG1991|consen  698 YFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL-FLEL  773 (1010)
T ss_pred             HHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH-HHHH
Confidence            778888888888763321   12221     23445556665531 22234456666665554212222222211 2222


Q ss_pred             HHHHHhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-----CCHHHHHHHHHHHHHHHHhh
Q 009665          373 LVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-----PDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       373 L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-----~~~~v~~~~l~aL~~l~~~~  442 (529)
                      .+.-+..  .+...+..++.++.|............|-+.|....+..+.-.     ....=++.|+-+|..++..+
T Consensus       774 a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~  850 (1010)
T KOG1991|consen  774 ALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLG  850 (1010)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence            3333333  3567888899999888888777788888877775554333211     11112344555666676665

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.75  E-value=0.011  Score=59.22  Aligned_cols=297  Identities=15%  Similarity=0.104  Sum_probs=169.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCh----hhHHhhcCChHHHHHhhcCCC------ChHHHHHHHHHHHHHhcCCh-hhHHH
Q 009665           84 DRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNIASGTS-ENTRV  152 (529)
Q Consensus        84 ~~~~~~~a~~~l~~lls~~~~~~----~~~~i~~g~i~~Li~lL~~~~------~~~v~~~a~~~L~~l~~~~~-~~~~~  152 (529)
                      +...-...+..+..++.......    .....+..++|.+.++.....      ++.+...+..++..+...-+ +..+.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45666677777777766532222    233345568888888764321      14555666666666665333 33333


Q ss_pred             HHhCCChHHHHHhhC----------C------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHH
Q 009665          153 VIDHGAVPIFVRLLS----------S------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM  216 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~----------~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~  216 (529)
                      ++     ..+..++.          .      ...........+++.+-.+..-  ..  ....+..++.+.....++..
T Consensus       136 ~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~--~~--~~~ll~~l~~~~~~~~~~~~  206 (415)
T PF12460_consen  136 IL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL--PD--LEELLQSLLNLALSSEDEFS  206 (415)
T ss_pred             HH-----HHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc--cC--HHHHHHHHHHHHHcCCChHH
Confidence            32     22333222          0      1111222222333333222110  01  11256667777655666777


Q ss_pred             HHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh-ccCChHHH----HHHHHHHHHhccCCchhHHHHHHhCcHHHHHHh
Q 009665          217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVL----TDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  291 (529)
Q Consensus       217 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~----~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  291 (529)
                      +..++.+++.+....+...  ....++..+...+ ...++..+    ....|...-+.-.......     .++..|+.+
T Consensus       207 ~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~l  279 (415)
T PF12460_consen  207 RLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLEL  279 (415)
T ss_pred             HHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHH
Confidence            8888888887776532222  3345555555444 23333333    4444444444422222222     456778888


Q ss_pred             cCCCCcchHHHHHHHHHHhhcCChhh--------HHHHHhc----CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 009665          292 LRHPSPSVLIPALRTVGNIVTGDDMQ--------TQCIINH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  359 (529)
Q Consensus       292 L~~~~~~v~~~al~~L~~l~~~~~~~--------~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  359 (529)
                      +.+  +.+...+.+.++-+....+..        .+.+...    .++|.++...+.. +...|..-..+|+++..+-|.
T Consensus       280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~  356 (415)
T PF12460_consen  280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPK  356 (415)
T ss_pred             hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCH
Confidence            887  567888888888888763321        2222222    3466666666666 556888888999999997665


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       360 ~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      .+-.---..++|.|++.|+.++.+++..++.+|..+....
T Consensus       357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            4422212348999999999999999999999999999865

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=0.013  Score=56.03  Aligned_cols=223  Identities=16%  Similarity=0.087  Sum_probs=157.6

Q ss_pred             hhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC---------chhHHHHHHhCcHHHHHHhcCCCCcc------hHHH
Q 009665          238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGT---------NDKIQAVIEAGVCPRLVELLRHPSPS------VLIP  302 (529)
Q Consensus       238 ~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~---------~~~~~~~~~~~~~~~L~~lL~~~~~~------v~~~  302 (529)
                      ....+++.++.+|.+++.+|....+..+..+++.+         ...+..+++.++++.|++.+..-+..      -...
T Consensus       122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~  201 (536)
T KOG2734|consen  122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN  201 (536)
T ss_pred             HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence            34678999999999999999999999999998632         13456778889999999887543332      3556


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--
Q 009665          303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--  379 (529)
Q Consensus       303 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--  379 (529)
                      ++..+-|++.-.+..+..+.+.|.+.+|+.-+... .-...+..|.-+++-+...+.+....+-+-+++..+++-+.-  
T Consensus       202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk  281 (536)
T KOG2734|consen  202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK  281 (536)
T ss_pred             HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence            78889999998888888888889999988865432 134567788888888887766666666677788888776542  


Q ss_pred             -CC------hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 009665          380 -AE------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG  452 (529)
Q Consensus       380 -~~------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~  452 (529)
                       .+      .+.-.+...+||.+..  .+.....++...++....-+++. ....+..++.+|..++.-.+         
T Consensus       282 ~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~---------  349 (536)
T KOG2734|consen  282 RHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE---------  349 (536)
T ss_pred             ccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC---------
Confidence             22      3456777888888877  44666777766666555544443 44455667777776654332         


Q ss_pred             ccchHHHHHHhhchHHHHHHH
Q 009665          453 GVNLFAQAIDDAEGLEKIENL  473 (529)
Q Consensus       453 ~~~~~~~~i~~~g~~~~l~~L  473 (529)
                       .-+++..|.+.+|+..+-.+
T Consensus       350 -gt~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  350 -GTPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             -chHHHHHHHHHHhHHHHHHH
Confidence             12357777777777777655

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.0025  Score=64.70  Aligned_cols=325  Identities=13%  Similarity=0.108  Sum_probs=166.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009665           76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID  155 (529)
Q Consensus        76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  155 (529)
                      +-+.|+.+|+-+|-..++.|+++=    .   .+++ ..++|.+...|.+.+ +-+|..|..++..|-....    .++.
T Consensus       104 ~RkDLQHPNEyiRG~TLRFLckLk----E---~ELl-epl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~L~p  170 (948)
T KOG1058|consen  104 YRKDLQHPNEYIRGSTLRFLCKLK----E---PELL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----HLIP  170 (948)
T ss_pred             HhhhccCchHhhcchhhhhhhhcC----c---HHHh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----hhcC
Confidence            334567778888888888887752    1   1222 358899999999988 8999999999988876311    1111


Q ss_pred             CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCC----------------CchhHHHH-------------HhcCChHHHH
Q 009665          156 HGAVPIFVRLLS-SPTDDVREQAVWALGNVAGD----------------SPKCRDLV-------------LSNGALMPLL  205 (529)
Q Consensus       156 ~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~----------------~~~~~~~~-------------~~~~~i~~l~  205 (529)
                       .+-..+-.+|. ..++..+.+|...|...-.+                ++..+-.+             .+...+..+.
T Consensus       171 -DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~  249 (948)
T KOG1058|consen  171 -DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIY  249 (948)
T ss_pred             -ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHH
Confidence             11122222222 24455555554433332110                00000000             0001222333


Q ss_pred             HHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCc
Q 009665          206 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  284 (529)
Q Consensus       206 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  284 (529)
                      .+| .++++.+...++.+|..++...     ..+......++.++. ..|..+..-.+.-|..+.....    .+.+ |.
T Consensus       250 ~lL-~stssaV~fEaa~tlv~lS~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~----~il~-~l  318 (948)
T KOG1058|consen  250 NLL-SSTSSAVIFEAAGTLVTLSNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE----KILQ-GL  318 (948)
T ss_pred             HHH-hcCCchhhhhhcceEEEccCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----HHHH-HH
Confidence            333 2223333333333333333221     111122222222222 1122222222222222221111    1111 55


Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh-c-----cCCchhHHHHHHHHHHHHhcCCH
Q 009665          285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-T-----QNYKKSIKKEACWTISNITAGNV  358 (529)
Q Consensus       285 ~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~-----~~~~~~v~~~a~~~L~nl~~~~~  358 (529)
                      +--++..|++++-+++..++.+.-.+++....  .     .++..|.+-+ +     +....+.|..-..++..++...|
T Consensus       319 ~mDvLrvLss~dldvr~Ktldi~ldLvssrNv--e-----div~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp  391 (948)
T KOG1058|consen  319 IMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV--E-----DIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP  391 (948)
T ss_pred             HHHHHHHcCcccccHHHHHHHHHHhhhhhccH--H-----HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh
Confidence            66677788899999999999888777764331  1     1122222222 1     12245678888899998888767


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHHHH
Q 009665          359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLEN  437 (529)
Q Consensus       359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~  437 (529)
                      +..     +.+++.|++.+.+.++..-...+..+......- |..     +..++..|++-+. -...++...++|+++.
T Consensus       392 ~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~L-----r~~ii~~l~~~~~~irS~ki~rgalwi~Ge  460 (948)
T KOG1058|consen  392 EVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNL-----RASIIEKLLETFPQIRSSKICRGALWILGE  460 (948)
T ss_pred             HHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chH-----HHHHHHHHHHhhhhhcccccchhHHHHHHH
Confidence            743     447889999998887665555555555444422 111     2234555555443 3566788889999997


Q ss_pred             HHHhhh
Q 009665          438 ILKAGE  443 (529)
Q Consensus       438 l~~~~~  443 (529)
                      .+....
T Consensus       461 Yce~~~  466 (948)
T KOG1058|consen  461 YCEGLS  466 (948)
T ss_pred             HHhhhH
Confidence            776544

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.71  E-value=0.062  Score=56.33  Aligned_cols=169  Identities=17%  Similarity=0.195  Sum_probs=125.4

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009665           80 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  159 (529)
Q Consensus        80 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  159 (529)
                      +.+++...+..|++.+......+.+  .     ..+.|-+++...+.+ .+++.-.-.-|..++...|+..-.     ++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d--m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av   94 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED--M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV   94 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC--h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence            6677777788887665544443312  1     125677788888666 899999888899999877744332     36


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhh
Q 009665          160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  239 (529)
Q Consensus       160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  239 (529)
                      +.+.+=+.++++.+|..|+++++.+=  .++.     -..+++++.+++ .+.++.+++.|+.++..+-+-+  +.....
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el-----~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~  164 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKEL-----LGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE  164 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcC--hHHH-----HHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence            78888899999999999999999872  1222     123577888888 8889999999999999998654  222333


Q ss_pred             hchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665          240 RPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~  271 (529)
                      .|.+..+..++.+.||.|..+|+.++..+...
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            45777788888899999999999999988654

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.68  E-value=0.038  Score=57.74  Aligned_cols=248  Identities=15%  Similarity=0.169  Sum_probs=160.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHH
Q 009665          167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL  246 (529)
Q Consensus       167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L  246 (529)
                      .+..+.+.-.+.|+++..+.........+.  .++...+..+..+..+.++..++.+++..|.  +.........++..|
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L  535 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL  535 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence            345677666899999977654322222211  2445556666566667778888888887773  334444556778888


Q ss_pred             HHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc--CCCCcchHHHHHHHHHHhhcCChhhHHHHHhc
Q 009665          247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH  324 (529)
Q Consensus       247 ~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  324 (529)
                      .++......++......+|+..+..+++. ..-.++.+.|.++.+.  .+++|.+...+-.++-.++.... . .--+..
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~-~g~m~e  612 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-N-YGPMQE  612 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-h-hcchHH
Confidence            88888888999999999999999887755 3455667778777765  33566666666666665554111 1 111233


Q ss_pred             CChHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-hcCChhHHHHHHHHHHHHhcCC
Q 009665          325 QALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       325 ~~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      ..+|.+++.|..+ .    ......++-.|..+.++.+.-....+-.-++|.+.++. .++|..+-..+..||..+....
T Consensus       613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            6789999999876 4    55666777788878875443333333344788888875 4458889999999999998875


Q ss_pred             CHHHHHHHHHcC-----ChHHHHhccCC
Q 009665          400 SNEQIKFLVSQG-----CIKPLCDLLNC  422 (529)
Q Consensus       400 ~~~~~~~l~~~~-----~l~~L~~lL~~  422 (529)
                      .++...+=.+.|     ++..+.+||+-
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp  719 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLDP  719 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcCC
Confidence            433333322222     24555566653

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.66  E-value=0.011  Score=56.36  Aligned_cols=207  Identities=13%  Similarity=0.094  Sum_probs=147.8

Q ss_pred             HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh-----HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                      +.+...+++..|+..|..-+-+.+..+..+.+++.......     ...+.. ..-+.+..++....++++-..+...|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence            44666799999999999988889999999999998764322     223332 223334444433335567677777777


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc--CChHHHHhccCCCCHHHHH
Q 009665          352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--GCIKPLCDLLNCPDPRIVT  429 (529)
Q Consensus       352 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~lL~~~~~~v~~  429 (529)
                      .++.. +.....++....+..+.+.+..++.++...|...+..+......-...+|..+  .+...+..+|.+++.-++.
T Consensus       149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr  227 (335)
T PF08569_consen  149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR  227 (335)
T ss_dssp             HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred             HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence            77776 66677888888999999999999999999999999998876443334444332  3467888899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       430 ~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      .++..|+.++......         +.+...+.+..-+..+-.|..+++..|+-.|.++..-|..
T Consensus       228 qslkLL~ellldr~n~---------~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  228 QSLKLLGELLLDRSNF---------NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHHHSGGGH---------HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHchhHH---------HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence            9999999999765433         2345666666778888888999999999999888875543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.0024  Score=61.51  Aligned_cols=147  Identities=15%  Similarity=0.146  Sum_probs=88.7

Q ss_pred             CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc----C--CHH-HHHHHHH
Q 009665          294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA----G--NVN-QIQAIIE  366 (529)
Q Consensus       294 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~--~~~-~~~~l~~  366 (529)
                      +++.-++..|++.++.++-+.........-......+...|.+. .-..|..++|+++||+.    +  +++ ....+..
T Consensus       402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg  480 (728)
T KOG4535|consen  402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG  480 (728)
T ss_pred             hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence            34445777888998888876554444444456677777777776 67789999999999986    2  222 2222222


Q ss_pred             cCCHHHHHHHHh---cCChhHHHHHHHHHHHHhcCCCHH--HHHHHHHcCChHHHHhcc-CCCCHHHHHHHHHHHHHHHH
Q 009665          367 AGIIGPLVNLLL---NAEFEIKKEAAWAISNATSGGSNE--QIKFLVSQGCIKPLCDLL-NCPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       367 ~~~l~~L~~~l~---~~~~~v~~~a~~aL~nl~~~~~~~--~~~~l~~~~~l~~L~~lL-~~~~~~v~~~~l~aL~~l~~  440 (529)
                      . .+..++....   ....+|+..|..+|+|+...-.+-  ........+.+..+.... -...-+|+=+++.+++|+++
T Consensus       481 ~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk  559 (728)
T KOG4535|consen  481 L-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK  559 (728)
T ss_pred             H-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence            1 3444444322   236789999999999997532110  001111222232332222 23445788889999999987


Q ss_pred             hh
Q 009665          441 AG  442 (529)
Q Consensus       441 ~~  442 (529)
                      ..
T Consensus       560 n~  561 (728)
T KOG4535|consen  560 NP  561 (728)
T ss_pred             Cc
Confidence            54

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.62  E-value=0.0072  Score=53.95  Aligned_cols=255  Identities=18%  Similarity=0.227  Sum_probs=154.6

Q ss_pred             HHHHHhhcCCCC-hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 009665          117 PRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  195 (529)
Q Consensus       117 ~~Li~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  195 (529)
                      ..+.+.|...+. ..-++.|+..|.++..  +.         .+..+.+...+++..++...+.+|+.....        
T Consensus         6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~--~~---------~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~--------   66 (289)
T KOG0567|consen    6 ETIGNILVNKSQPLQNRFRALFNLRNLLG--PA---------AIKAITKAFIDDSALLKHELAYVLGQMQDE--------   66 (289)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHhhhccCC--hH---------HHHHHHHhcccchhhhccchhhhhhhhccc--------
Confidence            344455544321 2345666666666665  21         145555555555556666677777766432        


Q ss_pred             HhcCChHHHHHHhcc-chhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009665          196 LSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  274 (529)
Q Consensus       196 ~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~  274 (529)
                         ..++.++..+.. +..+-++..+..+|..+..          ...++.+-+..+++-..|+..+..++..+-.....
T Consensus        67 ---~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   67 ---DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             ---hhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence               256777777743 3356667778888887652          24566666776666677777777777666432110


Q ss_pred             hH----HHH--H------HhCcHHHHHHhcCC-CCcc-hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCch
Q 009665          275 KI----QAV--I------EAGVCPRLVELLRH-PSPS-VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK  340 (529)
Q Consensus       275 ~~----~~~--~------~~~~~~~L~~lL~~-~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  340 (529)
                      ..    ...  +      ..+-+..+-..|.+ ..+. -+..|.+.|.|+..  ++         .+..|..-+..+ +.
T Consensus       134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~~~-Sa  201 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLADD-SA  201 (289)
T ss_pred             ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcccc-hH
Confidence            00    000  0      00112223222222 2222 23456666666533  32         244566667777 88


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009665          341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  418 (529)
Q Consensus       341 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  418 (529)
                      -.|.+++++++.+-+.  .         .+|.|...|.+.  ++-||.+|+.||+.++..   +         +++.|..
T Consensus       202 lfrhEvAfVfGQl~s~--~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~e  258 (289)
T KOG0567|consen  202 LFRHEVAFVFGQLQSP--A---------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLKE  258 (289)
T ss_pred             HHHHHHHHHHhhccch--h---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHHH
Confidence            8999999999988653  2         567777777664  788999999999999752   2         5677888


Q ss_pred             ccCCCCHHHHHHHHHHHHHH
Q 009665          419 LLNCPDPRIVTVCLEGLENI  438 (529)
Q Consensus       419 lL~~~~~~v~~~~l~aL~~l  438 (529)
                      +++++++-|+..|.-+|..+
T Consensus       259 ~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  259 YLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHHH
Confidence            88888888888888777754

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0041  Score=63.55  Aligned_cols=284  Identities=13%  Similarity=0.131  Sum_probs=152.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      ++.+=.++.+....+..+|++++..+-...    ...+..  .+..|--+++++. +.+|+.|.++|..++...|.....
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~----~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPNTN----SRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhccccC----Hhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCccccc
Confidence            444455666677777777777776653221    222221  4555666666666 677777777777777644432211


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009665          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  232 (529)
                         ++  .-|-.++.+.+..+...|+.+|..--.+  ...+.+.     ..+.... .+-+.+.+..+..++..||...|
T Consensus       320 ---cN--~elE~lItd~NrsIat~AITtLLKTG~e--~sv~rLm-----~qI~~fv-~disDeFKivvvdai~sLc~~fp  386 (865)
T KOG1078|consen  320 ---CN--LDLESLITDSNRSIATLAITTLLKTGTE--SSVDRLM-----KQISSFV-SDISDEFKIVVVDAIRSLCLKFP  386 (865)
T ss_pred             ---cc--hhHHhhhcccccchhHHHHHHHHHhcch--hHHHHHH-----HHHHHHH-HhccccceEEeHHHHHHHHhhcc
Confidence               11  2333444444444444444444332111  1112211     1111111 22233334444444445554433


Q ss_pred             CCchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009665          233 QPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (529)
Q Consensus       233 ~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~  311 (529)
                      ...    ...++.|..+|..+ .-+-..+...++..+....++...     .++..|+.++.+..  ...-+.++|+-+.
T Consensus       387 ~k~----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG  455 (865)
T KOG1078|consen  387 RKH----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLG  455 (865)
T ss_pred             HHH----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHh
Confidence            222    34556666666643 455666677777766654333322     34455666654432  3445555665555


Q ss_pred             cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHH
Q 009665          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  391 (529)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~a  391 (529)
                      ...+..   ......+..+...+.-. +..+|.+|..++.++..+++..     ...+...|.+++.+.|.++|..|..+
T Consensus       456 ~EgP~a---~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~  526 (865)
T KOG1078|consen  456 KEGPKA---PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFY  526 (865)
T ss_pred             ccCCCC---CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHH
Confidence            433211   11224455555555555 7789999999999998654332     22355667788888899999999999


Q ss_pred             HHHHh
Q 009665          392 ISNAT  396 (529)
Q Consensus       392 L~nl~  396 (529)
                      |.++.
T Consensus       527 l~~l~  531 (865)
T KOG1078|consen  527 LKNLE  531 (865)
T ss_pred             HHHhh
Confidence            98887

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.035  Score=59.77  Aligned_cols=235  Identities=13%  Similarity=0.064  Sum_probs=143.6

Q ss_pred             HHHHHhccchhHHHHHHHHHHHhhhhcCCC--CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009665          203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  280 (529)
Q Consensus       203 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  280 (529)
                      .+.....++.+..++..+...|..++...+  ......+..+...|..-+++.+...+...+.+|..|.+..+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            344444455678899999999999998832  222334456666777777788888999999999988866552223333


Q ss_pred             HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc-------CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009665          281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (529)
Q Consensus       281 ~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~-------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  353 (529)
                      ..-+.+.++. +.+.+...+..|..+|-.++.       +++. ....++ ..++.|...+-.. ...+......++..+
T Consensus       737 ~k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 PKLIPEVILS-LKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI  812 (1176)
T ss_pred             HHHHHHHHHh-cccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence            3333344444 477777778777777777662       1111 011111 2344444443333 222222223444444


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHH
Q 009665          354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  433 (529)
Q Consensus       354 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~  433 (529)
                      ..........-.-.+++..+.-+|.+..+++++.|+..+.-++..-+........ ..+++.+..++++....++..+-.
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4321111111111235566677788889999999999999999876544444332 236888888888888888888888


Q ss_pred             HHHHHHHhh
Q 009665          434 GLENILKAG  442 (529)
Q Consensus       434 aL~~l~~~~  442 (529)
                      .|..++...
T Consensus       892 LlekLirkf  900 (1176)
T KOG1248|consen  892 LLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHh
Confidence            888887654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.60  E-value=9.5e-05  Score=50.27  Aligned_cols=55  Identities=36%  Similarity=0.579  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHh
Q 009665          214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  268 (529)
Q Consensus       214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l  268 (529)
                      +.++..++|+|.+++...+.........++|.|..+|.++++.|+..++|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4678999999999888765556667789999999999999999999999999875

...

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.14  Score=54.87  Aligned_cols=340  Identities=15%  Similarity=0.153  Sum_probs=182.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+..++..+++.|..++-.|++.+.++.+.....-++.     ++...++++...+.+..=..|+-+|+.++...--...
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            46777888889999999999999999987542111222     4455566555444244556788888888873311111


Q ss_pred             HHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhccchhHHHHHHHH
Q 009665          152 VVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNAT  221 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~  221 (529)
                      .+.  .++|.++..|.-        ....||+.|+.+++.++......  .. +. ......|+.....+.+..+++.|.
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l-~~L~s~LL~~AlFDrevncRRAAs  492 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VL-QSLASALLIVALFDREVNCRRAAS  492 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HH-HHHHHHHHHHHhcCchhhHhHHHH
Confidence            111  245666665532        34679999999999988543321  11 11 111222222222566788899999


Q ss_pred             HHHhhhhcCCCCCchhhhhchHHHHHHhhccCC---hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHh-cCCCCc
Q 009665          222 WTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSP  297 (529)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~  297 (529)
                      .++-......+...     .++    .++.+.|   -..+.++...++.-....+.....+++     .++.- +.|=++
T Consensus       493 AAlqE~VGR~~n~p-----~Gi----~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~  558 (1133)
T KOG1943|consen  493 AALQENVGRQGNFP-----HGI----SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDV  558 (1133)
T ss_pred             HHHHHHhccCCCCC-----Cch----hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccH
Confidence            88887665431111     111    1122222   122333333333222222222222222     22222 444567


Q ss_pred             chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH---HHHHHH---cC---
Q 009665          298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ---IQAIIE---AG---  368 (529)
Q Consensus       298 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~---~~~l~~---~~---  368 (529)
                      .++..+.++|.+++...++    ......++.++....+. +...|..+..+.+.++.+....   ...+.+   ++   
T Consensus       559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~  633 (1133)
T KOG1943|consen  559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLS  633 (1133)
T ss_pred             HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhh
Confidence            8899999999998775543    33456778888877777 7778877777766666531110   111111   11   


Q ss_pred             CHHHHHHH-HhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          369 IIGPLVNL-LLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       369 ~l~~L~~~-l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      +++.++.. +..+ ..-++...+..+-.+..... .....++-.+.-..+.+.+...+ .++..+.+++..++..
T Consensus       634 ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~  706 (1133)
T KOG1943|consen  634 IIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST  706 (1133)
T ss_pred             hccHHHHHHhccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence            23333332 2222 23455566666666665433 22223333334445555553344 6777777777777543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.00044  Score=66.34  Aligned_cols=300  Identities=15%  Similarity=0.133  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-----CCchhHHHHHhcCChH--
Q 009665          130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-----DSPKCRDLVLSNGALM--  202 (529)
Q Consensus       130 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-----~~~~~~~~~~~~~~i~--  202 (529)
                      .++.++..+|..++..-.-.+..+++  +...+...+....+.++..+..++..+-.     +.|+-.+.-...+.+-  
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            46778888888777633222222222  22344445556788899988888877642     2222111111111111  


Q ss_pred             ----HHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHH
Q 009665          203 ----PLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ  277 (529)
Q Consensus       203 ----~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~  277 (529)
                          +.-....++..+..+...|.+++++.... ...........+-.+...-.+.+.-++..+++++.-+.-++.-+..
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d  427 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD  427 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence                11122223345567778888888876543 1111100011111222222234455788888888877766655545


Q ss_pred             HHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC----Ch---hhHHHHHhcCChHHHHHHh--ccCCchhHHHHHHH
Q 009665          278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DD---MQTQCIINHQALPCLLDLL--TQNYKKSIKKEACW  348 (529)
Q Consensus       278 ~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~---~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~  348 (529)
                      ...-......+...+.+..-..+..+.+++|||+..    .+   .....+.. -.+..++..-  .+..+.+|+..+..
T Consensus       428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr  506 (728)
T KOG4535|consen  428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR  506 (728)
T ss_pred             HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence            444446667777777777778899999999999752    11   12222221 1122222221  12225679999999


Q ss_pred             HHHHHhcCCHHHHHHHHHc-------CCHHHHHHH-HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009665          349 TISNITAGNVNQIQAIIEA-------GIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  420 (529)
Q Consensus       349 ~L~nl~~~~~~~~~~l~~~-------~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  420 (529)
                      +|+|+..-    .+.+.+.       +-+..++.. .-.+..+||=+||++++|+..+..-.....=....+.+.|+.++
T Consensus       507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv  582 (728)
T KOG4535|consen  507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV  582 (728)
T ss_pred             HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence            99998642    2222221       112222222 22246789999999999999864211100001122456666666


Q ss_pred             C-CCCHHHHHHHHHHHH
Q 009665          421 N-CPDPRIVTVCLEGLE  436 (529)
Q Consensus       421 ~-~~~~~v~~~~l~aL~  436 (529)
                      . ..+-+|+..+..+|.
T Consensus       583 ~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  583 TSCKNFKVRIRAAAALS  599 (728)
T ss_pred             HHhccceEeehhhhhhc
Confidence            4 355566666655554

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.50  E-value=0.0003  Score=44.33  Aligned_cols=39  Identities=38%  Similarity=0.753  Sum_probs=35.7

Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009665          147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA  185 (529)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  185 (529)
                      ++.+..+++.|+++.|+.++.+++.+++..++|+|+|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346778889999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.49  E-value=0.019  Score=59.90  Aligned_cols=237  Identities=16%  Similarity=0.107  Sum_probs=154.3

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009665          122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  200 (529)
Q Consensus       122 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~  200 (529)
                      .+.....|.+-..+.|.+...+.........+-  -.+...+..+. +..+-++..|+.+++..++... +..  ...++
T Consensus       457 ~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~i  531 (1005)
T KOG2274|consen  457 GLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPMI  531 (1005)
T ss_pred             hcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchHH
Confidence            333333477777888888877763222211110  11233333333 3456677778888887773321 111  12235


Q ss_pred             hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc--cCChHHHHHHHHHHHHhccCCchhHHH
Q 009665          201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQA  278 (529)
Q Consensus       201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~L~~l~~~~~~~~~~  278 (529)
                      +..|+++. ...+.++......+|+..|..+|.........+.|.+..++.  ++||.|...+-.++-.+++... +...
T Consensus       532 ld~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g~  609 (1005)
T KOG2274|consen  532 LDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYGP  609 (1005)
T ss_pred             HHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhcc
Confidence            56666666 556778888999999999998877777777788887776654  6688887777777777765322 2222


Q ss_pred             HHHhCcHHHHHHhcCCCC----cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHh
Q 009665          279 VIEAGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  354 (529)
Q Consensus       279 ~~~~~~~~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  354 (529)
                      +.+ ..+|.++..|..+.    ......++.+|..+..+.+.-....+-..++|.+.++.-|..+...-..+..+|..+.
T Consensus       610 m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I  688 (1005)
T KOG2274|consen  610 MQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI  688 (1005)
T ss_pred             hHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence            222 67899999998765    5566778888888887766444444445678888887766658888889999999888


Q ss_pred             cCCHHHHHHHHH
Q 009665          355 AGNVNQIQAIIE  366 (529)
Q Consensus       355 ~~~~~~~~~l~~  366 (529)
                      ..+.++...--.
T Consensus       689 s~~~eq~~t~~~  700 (1005)
T KOG2274|consen  689 SVTLEQLLTWHD  700 (1005)
T ss_pred             hcCHHHHHhhcc
Confidence            876776554443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.47  E-value=0.018  Score=51.45  Aligned_cols=243  Identities=18%  Similarity=0.227  Sum_probs=134.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009665           84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV  163 (529)
Q Consensus        84 ~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  163 (529)
                      ...-++.|+..|+.+....            .+..+.+...+++ ..++.+.+++|+....           ...++.|+
T Consensus        18 ~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~   73 (289)
T KOG0567|consen   18 PLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLV   73 (289)
T ss_pred             HHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHH
Confidence            3455667777777765322            1444445544444 4555666666666654           23466666


Q ss_pred             HhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC-----------
Q 009665          164 RLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-----------  230 (529)
Q Consensus       164 ~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~-----------  230 (529)
                      ..+..  ..+-+|..|..+|+++. +. .         .++.+-+.. +++-..+...+..++..+-..           
T Consensus        74 ~vl~desq~pmvRhEAaealga~~-~~-~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p  141 (289)
T KOG0567|consen   74 EVLLDESQEPMVRHEAAEALGAIG-DP-E---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSP  141 (289)
T ss_pred             HHhcccccchHHHHHHHHHHHhhc-ch-h---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCc
Confidence            66654  44666777777777765 21 1         122222332 333333444333333332211           


Q ss_pred             ----CCCCchhhhhchHHHHHHhh-ccCChHH-HHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHH
Q 009665          231 ----KPQPLFEQTRPALPALERLI-HSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL  304 (529)
Q Consensus       231 ----~~~~~~~~~~~~l~~L~~ll-~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al  304 (529)
                          +|.+.  ....-+..+-..| ..+.+.. +..++..|.|+..  +         ..+..+..-+..++.-++..+.
T Consensus       142 ~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~SalfrhEvA  208 (289)
T KOG0567|consen  142 YISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADDSALFRHEVA  208 (289)
T ss_pred             cccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccchHHHHHHHH
Confidence                11111  1122233333333 3233332 4445555555422  1         2244555666777788899999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009665          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (529)
Q Consensus       305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~  383 (529)
                      .++|.+-+.           -.++.|.+.|.. .+.+.+|.+|+.+|+.++..  +         .++.|...+.+.++-
T Consensus       209 fVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~~D~~~v  266 (289)
T KOG0567|consen  209 FVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYLGDEERV  266 (289)
T ss_pred             HHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHcCCcHHH
Confidence            999998652           245666666633 33789999999999999753  3         466777778877777


Q ss_pred             HHHHHHHHHHHHhc
Q 009665          384 IKKEAAWAISNATS  397 (529)
Q Consensus       384 v~~~a~~aL~nl~~  397 (529)
                      |++.+..+|.-+-.
T Consensus       267 v~esc~valdm~ey  280 (289)
T KOG0567|consen  267 VRESCEVALDMLEY  280 (289)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777777765543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.45  E-value=0.0029  Score=48.35  Aligned_cols=93  Identities=16%  Similarity=0.268  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHh
Q 009665          384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD  463 (529)
Q Consensus       384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~  463 (529)
                      .|+.++.+|..++.........++  ..++++++..+.++|+.|+-.++++|.++.+.....           +...|.+
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----------~l~~f~~   68 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----------ILPYFNE   68 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence            366778888888766554544443  348999999999999999999999999999876432           2334433


Q ss_pred             hchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665          464 AEGLEKIENLQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       464 ~g~~~~l~~L~~~~~~~v~~~a~~il~~~  492 (529)
                        .++.|-.+..++++.|+..| .+|++.
T Consensus        69 --IF~~L~kl~~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   69 --IFDALCKLSADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             --HHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence              47888999999999999877 455544

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.011  Score=60.71  Aligned_cols=286  Identities=17%  Similarity=0.159  Sum_probs=164.3

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (529)
                      ..+.+-.++.+.. ..+..+|++++.++...++....     ..+..|-.+++++...+|-.|+++|..+|.-.|..   
T Consensus       246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---  316 (865)
T KOG1078|consen  246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---  316 (865)
T ss_pred             HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---
Confidence            3445555566666 78889999998888874433222     26778888888888999999999999998655531   


Q ss_pred             HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch
Q 009665          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  274 (529)
Q Consensus       195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~  274 (529)
                      +..  +-..|-.++ .+.+..+   +..++..|...........+..-++..+.=+.++..-+..+++.+|+.....   
T Consensus       317 v~~--cN~elE~lI-td~NrsI---at~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~---  387 (865)
T KOG1078|consen  317 VTV--CNLDLESLI-TDSNRSI---ATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR---  387 (865)
T ss_pred             ccc--cchhHHhhh-cccccch---hHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH---
Confidence            111  111122222 2222222   2233333333221111111112222222222333334455555555544321   


Q ss_pred             hHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009665          275 KIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (529)
Q Consensus       275 ~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  353 (529)
                      .     ..+.+..|..+|.. +..+.......++..++..++....     .++..|...+.+.   +...-+...|.-+
T Consensus       388 k-----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlL  454 (865)
T KOG1078|consen  388 K-----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLL  454 (865)
T ss_pred             H-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHH
Confidence            1     12445566666654 4556788888888888886665543     4566677777655   4555666666666


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHH
Q 009665          354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  433 (529)
Q Consensus       354 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~  433 (529)
                      ....|...   .....+..+.+...=.+..+|..|..+|.++..... .     ....+.-.|.+++.+.|.+++..+.-
T Consensus       455 G~EgP~a~---~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-~-----l~~sI~vllkRc~~D~DdevRdrAtf  525 (865)
T KOG1078|consen  455 GKEGPKAP---NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-V-----LLPSILVLLKRCLNDSDDEVRDRATF  525 (865)
T ss_pred             hccCCCCC---CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-C-----ccccHHHHHHHHhcCchHHHHHHHHH
Confidence            65212110   011233334443334567899999999999984421 1     12345667888999999999999999


Q ss_pred             HHHHHHH
Q 009665          434 GLENILK  440 (529)
Q Consensus       434 aL~~l~~  440 (529)
                      +|..+..
T Consensus       526 ~l~~l~~  532 (865)
T KOG1078|consen  526 YLKNLEE  532 (865)
T ss_pred             HHHHhhh
Confidence            9988873

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.39  E-value=0.0011  Score=50.59  Aligned_cols=67  Identities=16%  Similarity=0.356  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009665          131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS  197 (529)
Q Consensus       131 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  197 (529)
                      ++...+++|+|++..++...+.+.+.|++|.++....  ..++-+++.|++++.|++..+++.++.+..
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4667889999999999999999999999999999764  478999999999999999999988777655

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.38  E-value=0.00054  Score=43.14  Aligned_cols=40  Identities=48%  Similarity=0.642  Sum_probs=35.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       358 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                      ++....+++.|+++.|+.++.++++++++.|+|+|.|++.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3467778899999999999998899999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.025  Score=60.79  Aligned_cols=243  Identities=12%  Similarity=0.100  Sum_probs=152.8

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHH
Q 009665          119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV  195 (529)
Q Consensus       119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~  195 (529)
                      +.....+.++..+|..+.++|..++.. +.......+  ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334444443389999999999999985 222221111  1233455555566667778888888888875444 222222


Q ss_pred             HhcCChHHHHHHhccchhHHHHHHHHHHHhhhh--cCC----CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009665          196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK----PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (529)
Q Consensus       196 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~  269 (529)
                      ..  .++.++-.+ +..+...++++..+|..++  ...    ..+....+...++.+...+-.+...+....+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  344444444 6678888999999998888  221    22234455666666666554443333333355555555


Q ss_pred             cCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHH
Q 009665          270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  349 (529)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  349 (529)
                      .........-.-.+++..+..+|.+.+..++..|+..+..++...+...-.-....+++.+..+++.. ...+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            33222222222236778888889999999999999999999988775544333445788888888777 88899888888


Q ss_pred             HHHHhc-CCHHHHHHHHH
Q 009665          350 ISNITA-GNVNQIQAIIE  366 (529)
Q Consensus       350 L~nl~~-~~~~~~~~l~~  366 (529)
                      |-.+++ ...+.++.++.
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888877 23555555554

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.34  E-value=0.073  Score=54.01  Aligned_cols=295  Identities=12%  Similarity=0.117  Sum_probs=151.2

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009665          117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL  196 (529)
Q Consensus       117 ~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  196 (529)
                      ..++...+ ++ +..+.-|+..|......-|+.....     +..++.+..+++..||.+|+..|..+|.+.++....  
T Consensus        26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--   96 (556)
T PF05918_consen   26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--   96 (556)
T ss_dssp             HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred             HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence            34555555 35 7889999999999998778876654     588899999999999999999999999987765444  


Q ss_pred             hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc---cCChHHHHHHHHHHHH-hccCC
Q 009665          197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSY-LSDGT  272 (529)
Q Consensus       197 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~L~~-l~~~~  272 (529)
                         +...|+++| ...++.-...+-++|..|...++       .+.+..+...+.   +.|+.+++.++..|.. +-.-.
T Consensus        97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence               456788888 55566666666677766665432       334444444443   5688899999888753 22221


Q ss_pred             chhHH--HHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc----CChhhHHHHHhcCChHHHHHHh------ccCCch
Q 009665          273 NDKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDDMQTQCIINHQALPCLLDLL------TQNYKK  340 (529)
Q Consensus       273 ~~~~~--~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL------~~~~~~  340 (529)
                      .+...  .=.+.-++..+...|.+-...-......+|..+-.    .+....+.+     ++.+....      ... ++
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~  239 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP  239 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence            11111  11222344555666655333333334455555543    122233322     33333222      112 33


Q ss_pred             hHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH
Q 009665          341 SIKKEACWTISN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK  414 (529)
Q Consensus       341 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~  414 (529)
                      +.-.....++..    +..  .+.....++.+. ++|.+-++    ..+.+...+.++..++.++.......++. -++.
T Consensus       240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~  313 (556)
T PF05918_consen  240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ  313 (556)
T ss_dssp             HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence            333222222221    222  234445555543 77766555    44677888999999988765433333321 1334


Q ss_pred             HHHhccCC--CCH----HHHHHHHHHHHHHHHhhh
Q 009665          415 PLCDLLNC--PDP----RIVTVCLEGLENILKAGE  443 (529)
Q Consensus       415 ~L~~lL~~--~~~----~v~~~~l~aL~~l~~~~~  443 (529)
                      .|..++-.  ..+    ..++..+.++..|....+
T Consensus       314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p  348 (556)
T PF05918_consen  314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP  348 (556)
T ss_dssp             HHHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence            44444322  223    345667777777765544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.03  Score=57.16  Aligned_cols=167  Identities=20%  Similarity=0.240  Sum_probs=106.2

Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH-hccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009665          286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGNVNQIQAI  364 (529)
Q Consensus       286 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  364 (529)
                      +.+-+++.+.++-+|.....+++.--.++.       ..+++..|+.. .++. +.+||+.|+.+|+-++..+|++    
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~----  589 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQ----  589 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChhh----
Confidence            444556667777777776665544333222       12445556555 3455 8899999999999999987884    


Q ss_pred             HHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009665          365 IEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       365 ~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~  443 (529)
                           +|..+.+|... ++.||--|+.+|+-.+.+.....        ++..|-.+..++..-|+..++-++..|+.-..
T Consensus       590 -----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  590 -----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             -----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence                 46667777765 99999999999999888643222        34455555566667788999988888764322


Q ss_pred             hhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 009665          444 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  490 (529)
Q Consensus       444 ~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~  490 (529)
                      ..        .++-...|     .+.+..+..+.+++.-.+--.||.
T Consensus       657 ~~--------~~pkv~~f-----rk~l~kvI~dKhEd~~aK~GAilA  690 (929)
T KOG2062|consen  657 EQ--------LCPKVNGF-----RKQLEKVINDKHEDGMAKFGAILA  690 (929)
T ss_pred             cc--------cCchHHHH-----HHHHHHHhhhhhhHHHHHHHHHHH
Confidence            11        12223222     344666666666665444444443

>PRK14707 hypothetical protein; Provisional

Probab=97.29  E-value=0.42  Score=55.02  Aligned_cols=356  Identities=18%  Similarity=0.173  Sum_probs=200.3

Q ss_pred             hHHHHHhh-cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhCCCchhH
Q 009665          116 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-P-TDDVREQAVWALGNVAGDSPKCR  192 (529)
Q Consensus       116 i~~Li~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~-~~~v~~~a~~~L~nl~~~~~~~~  192 (529)
                      +..|++.+ +.+++.+.+..+......++. ++..+..+ +...|..++..++. + ++..+..+...-..++.+ ...+
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence            33444444 344447788877777777777 33444443 44456667777766 4 455554444444445544 4444


Q ss_pred             HHHHhcCChHHHHHHhccchhHHHHHHHHHHHh-hhhcCCCCCchhhh-hchHHHHHHhhccCChHHHHHHHHHHHH-hc
Q 009665          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-NFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSY-LS  269 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~L~~-l~  269 (529)
                      ..+-.. .+-..++.|.+-.+......++.++. .+..+. ....... ..+-..|-.+-+-+|..+...+...|.. |.
T Consensus       242 ~~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~  319 (2710)
T PRK14707        242 NELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA  319 (2710)
T ss_pred             HhCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence            444333 35556666656666655555554444 444332 2222222 2222333333345676776665555543 44


Q ss_pred             cCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh-ccCCchhHHHHHHH
Q 009665          270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACW  348 (529)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~  348 (529)
                      + +.+..+.+--.++-..|-.+-+-++..+...|...|.--....+...+.+ +...+..++.-| +-+ +..+...|+.
T Consensus       320 ~-d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp-~~~~c~~aa~  396 (2710)
T PRK14707        320 D-DPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWP-DTPVCAAAAS  396 (2710)
T ss_pred             c-cHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCC-CchHHHHHHH
Confidence            4 33333333222444444444455776677776666665555555555433 334444455544 445 5556666666


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHH
Q 009665          349 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV  428 (529)
Q Consensus       349 ~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~  428 (529)
                      .|..=..+.++..+.+-..|+-..|-.+-+-++..+...++.+|.--..+ +.+-++.|--.++...|-.+-+.+|..+.
T Consensus       397 ~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c  475 (2710)
T PRK14707        397 ALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPIC  475 (2710)
T ss_pred             HHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence            66655555577665555554444444444557888999998888777665 55666666555666667777788998877


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665          429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  492 (529)
                      ..+.+.|..-+.....            .++.|.-.+....|..|...++...+..|..-|..-
T Consensus       476 ~~aa~~La~~l~~~~~------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~r  527 (2710)
T PRK14707        476 GQTASALAARLAHERR------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAER  527 (2710)
T ss_pred             HHHHHHHHHHhcccHH------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            7666666544433322            355565666777888888888877776664444433

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.26  E-value=0.0023  Score=66.42  Aligned_cols=188  Identities=19%  Similarity=0.172  Sum_probs=128.6

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH--------HHHh----cCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD--------LVLS----NGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (529)
Q Consensus       159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~--------~~~~----~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  226 (529)
                      ...|+.+|+.  +++-..+..++.-+..|++.++.        .+.+    ..++|.++..+ ...+...+.....+|++
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence            3456666654  34445566666666665543321        1222    24677777777 35556667778888888


Q ss_pred             hhcCCCCCc-hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC---cchHHH
Q 009665          227 FCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIP  302 (529)
Q Consensus       227 l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~~~  302 (529)
                      ...+-|... ......++|.|++.|.-+|..++..++.++.-+..........-++ -++|.++.+-.+.+   ..+|..
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence            887654432 2244678889999999999999999999999887655433332222 56777777766554   568999


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       303 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                      |+.+|+.+.+..+...-......++..|.+.|.++ ..-||++|..+=.
T Consensus       973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence            99999999986554444444567888999999998 8899999986643

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.25  E-value=0.009  Score=57.07  Aligned_cols=203  Identities=12%  Similarity=0.100  Sum_probs=138.7

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-----HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  226 (529)
                      .+...+.+..|+..|..-+-+.+..+..+++++.......     .+.+.. ..-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            5566788999999999888999999999999998654332     233333 2123333334333466666666666666


Q ss_pred             hhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh---CcHHHHHHhcCCCCcchHHHH
Q 009665          227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPA  303 (529)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~a  303 (529)
                      .++...-.......+.+..+...+..++=+|..+|..++..+-.........++..   .++.....+|.+++.-++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            66654323333345666677788888899999999999998765555454545544   467778889999999999999


Q ss_pred             HHHHHHhhcCChhh---HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009665          304 LRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (529)
Q Consensus       304 l~~L~~l~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  356 (529)
                      +..||.+.......   ...+-+..-+..++.+|++. +..++-+|..++--+.+.
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhC
Confidence            99999998743322   22333556788999999998 999999999999888873

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.24  E-value=0.057  Score=51.39  Aligned_cols=196  Identities=13%  Similarity=0.115  Sum_probs=126.1

Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH--hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC--ChhhHH
Q 009665          244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQTQ  319 (529)
Q Consensus       244 ~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~--~~~~~~  319 (529)
                      ...+..+.......|..++..+..+..... ..+.+.+  .-++..+...++.+...-+..|+++++-++-.  ......
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            334445555668899999999988774432 1122221  24677778888777766677788888877654  223344


Q ss_pred             HHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHH--HHhc----------CChh
Q 009665          320 CIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVN--LLLN----------AEFE  383 (529)
Q Consensus       320 ~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~--~l~~----------~~~~  383 (529)
                      .+++ .+.|.|...+.+.. ...+|..++.+|+-++.   ..++.....++  .+..+..  +.+.          +++.
T Consensus       125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~  201 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAA  201 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccH
Confidence            4554 57788888887662 34566666666665543   34444443333  2331211  1221          1356


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009665          384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  444 (529)
Q Consensus       384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~  444 (529)
                      +...|+.+.+-++...+...+....+ ..++.|..+|++.+.+|+..+-++|.-|++....
T Consensus       202 l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  202 LVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            88899988888887766544444333 4689999999999999999999999999877653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.22  E-value=0.018  Score=50.07  Aligned_cols=93  Identities=24%  Similarity=0.295  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc
Q 009665          213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  292 (529)
Q Consensus       213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL  292 (529)
                      ++.++.+++-+++-|+...|    ....+.+|.+...|.++++.|+..++.+|.+|...+.-...    ..++..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence            46788889999998887653    34467789999999999999999999999999866432222    23347788888


Q ss_pred             CCCCcchHHHHHHHHHHhhcC
Q 009665          293 RHPSPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       293 ~~~~~~v~~~al~~L~~l~~~  313 (529)
                      .++++.++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999875

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.13  Score=52.91  Aligned_cols=281  Identities=16%  Similarity=0.127  Sum_probs=161.7

Q ss_pred             cCChHHHHHhhcCC-------CChHHHHHHHHHHHHHhc--CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009665          113 SGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN  183 (529)
Q Consensus       113 ~g~i~~Li~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  183 (529)
                      .|+++.+...|...       +++.-.+.|++.+.++..  .-+.....+.+.-+++.++..++++..-++..|+..++.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            47888888888321       224456677777777765  223333344555567888888899999999999999999


Q ss_pred             hhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC--CCchhhhhchHHHHHHhhccCChHHHHHH
Q 009665          184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDA  261 (529)
Q Consensus       184 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~d~~v~~~a  261 (529)
                      +..+   +++..+-..+.+...+++ .+.+..+...|+.++..+..+..  ..-...+.+.+..|+.+-+.-+.++...+
T Consensus       487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            9543   334444444667777777 55778888889999988887751  11112223344444444444456666665


Q ss_pred             HHHHH-HhccCCchhHHHHHHh---CcHHHHHHhcCCCC------cchHHHHHHHHHHhhc---CCh--hhHHHHHhcCC
Q 009665          262 CWALS-YLSDGTNDKIQAVIEA---GVCPRLVELLRHPS------PSVLIPALRTVGNIVT---GDD--MQTQCIINHQA  326 (529)
Q Consensus       262 ~~~L~-~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~------~~v~~~al~~L~~l~~---~~~--~~~~~~~~~~~  326 (529)
                      +..+. +.+..-......+...   ..+.....++..++      ++-...|.++|..+.+   .-+  ...-.-+....
T Consensus       563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl  642 (970)
T COG5656         563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL  642 (970)
T ss_pred             HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            55443 3332211111212211   22233333443321      1223445555444432   111  11111224466


Q ss_pred             hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCCh-hHHHHHHHHHHHHhcCCC
Q 009665          327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGS  400 (529)
Q Consensus       327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~-~v~~~a~~aL~nl~~~~~  400 (529)
                      .|.+--+|++. ..+.-.+|+..+-+.+-.+.+ +. -+--|+.+.+.+++.+... ..-.++.-++.|+...|.
T Consensus       643 ypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~-pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         643 YPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IE-PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             HHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hh-hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence            77777778777 777888999888877654222 11 1122455666666666543 667889999999988774

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.021  Score=58.86  Aligned_cols=238  Identities=15%  Similarity=0.083  Sum_probs=153.8

Q ss_pred             hHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHh-hhhcCCCCCchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHHh
Q 009665          191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-NFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYL  268 (529)
Q Consensus       191 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l  268 (529)
                      -+...+..|+...|+.+. ....+........+|. .+...     ......+++.+.+.++.. ...-...++.++.||
T Consensus       496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f~-----~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL  569 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDFP-----GERSYEVVKPLDSALHNDEKGLENFEALEALTNL  569 (748)
T ss_pred             hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCCC-----CCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence            345566778888888887 4444455555666665 11111     111123444444444432 122355678888899


Q ss_pred             ccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHHhccCCchhHHHHHH
Q 009665          269 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEAC  347 (529)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~  347 (529)
                      +..+....+.+++...++.+-.++..+++..+..++..+.||..+..-....+.+ ...++.....+... ......+++
T Consensus       570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a  648 (748)
T KOG4151|consen  570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA  648 (748)
T ss_pred             cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence            8776655566888777787888888899999999999999999987766666666 34455555566555 777777888


Q ss_pred             HHHHHHhcCCHHHHHH-HHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009665          348 WTISNITAGNVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  426 (529)
Q Consensus       348 ~~L~nl~~~~~~~~~~-l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~  426 (529)
                      .++..|+.....++.. .--......+..++.+.++.++...+..+.|+ ..+..+....+.....+..+..+-.-.-..
T Consensus       649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~-~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~  727 (748)
T KOG4151|consen  649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL-FEALFEIAEKIFETEVMELLSGLQKLNRAP  727 (748)
T ss_pred             ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH-HHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence            7777777654444442 22244778888899999999999999999994 444556666666666665555544333333


Q ss_pred             HHHHHHHHHH
Q 009665          427 IVTVCLEGLE  436 (529)
Q Consensus       427 v~~~~l~aL~  436 (529)
                      .+..+..+|.
T Consensus       728 ~~~~~~~~l~  737 (748)
T KOG4151|consen  728 KREDAAPCLS  737 (748)
T ss_pred             hhhhhhhHHH
Confidence            3333333333

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.15  E-value=0.093  Score=52.84  Aligned_cols=228  Identities=14%  Similarity=0.125  Sum_probs=141.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC-----CChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009665           81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIASGTSENTRVVID  155 (529)
Q Consensus        81 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  155 (529)
                      ...++.+..+|+++|.+++-.. ....+.+++.|..+.+++.|+..     + .++.+-..++|.-++...++.+..+++
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~  119 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE  119 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence            4567899999999999998754 44566777999999999999876     4 789999999999999888888877776


Q ss_pred             C-CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------
Q 009665          156 H-GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------  210 (529)
Q Consensus       156 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~-------  210 (529)
                      . +++..+...|..                 .+......++.++.|+..+.+.... -.....++.++.++..       
T Consensus       120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~  198 (446)
T PF10165_consen  120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS  198 (446)
T ss_pred             HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence            4 677777765531                 1345567788899999765543222 0122344444444321       


Q ss_pred             -chhHHHHHHHHHHHhhhhcCCCC------------CchhhhhchHHHHHHhhc----cC----ChHHHHHHHHHHHHhc
Q 009665          211 -HAKLSMLRNATWTLSNFCRGKPQ------------PLFEQTRPALPALERLIH----SN----DDEVLTDACWALSYLS  269 (529)
Q Consensus       211 -~~~~~~~~~a~~~L~~l~~~~~~------------~~~~~~~~~l~~L~~ll~----~~----d~~v~~~a~~~L~~l~  269 (529)
                       .........+..+|.|+-.....            .........+..|+.+|.    ..    -.+.....+.+|..++
T Consensus       199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence             12345566777777776221100            000111233444444443    21    2357778888888888


Q ss_pred             cCCchhHHHHHHh-----------------CcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009665          270 DGTNDKIQAVIEA-----------------GVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (529)
Q Consensus       270 ~~~~~~~~~~~~~-----------------~~~~~L~~lL~~~~~~v~~~al~~L~~l~~  312 (529)
                      ...... +..+..                 .+-.+|+.++.+..+.++..+...+..+|.
T Consensus       279 ~~~~~~-Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  279 RAAREV-RKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HhcHHH-HHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            765433 333333                 344556666666555566666666655554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.13  E-value=0.0036  Score=47.89  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009665          299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIE  366 (529)
Q Consensus       299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  366 (529)
                      ++...+++|+|++..+......+.+.++++.++..-. ++.+|-+|+.|.|++.|++.++++....+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4667899999999999999999999999999988763 2338999999999999999998887665544

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.12  E-value=0.018  Score=50.10  Aligned_cols=111  Identities=25%  Similarity=0.263  Sum_probs=82.7

Q ss_pred             ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH
Q 009665          254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  333 (529)
Q Consensus       254 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  333 (529)
                      ++.++.+++.+++.|+...+...+     ..++.+...|.++++.+|..|+.+|..+...+--.    ++..++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence            578999999999999976654444     56789999999999999999999999998753311    122344778888


Q ss_pred             hccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhc
Q 009665          334 LTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLN  379 (529)
Q Consensus       334 L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~  379 (529)
                      +.++ +++|+..|..++..+... .+..+    . ..++.++..+..
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~~~~~~i----~-~~~~e~i~~l~~  112 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKKRNPNII----Y-NNFPELISSLNN  112 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHhccchHH----H-HHHHHHHHHHhC
Confidence            8888 999999999999999875 34432    1 244445554544

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.07  E-value=0.039  Score=52.52  Aligned_cols=192  Identities=18%  Similarity=0.230  Sum_probs=121.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHh---hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC--C
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG--T  146 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i---~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~--~  146 (529)
                      .+...+..+.......|..++..+.+++... .  ...++   ...++..+.+.++.+. .+-+..|+.++.-++-.  .
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~--~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSR-Y--LPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-c--cHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCC
Confidence            3677888888778999999999999998653 2  22222   2346778888888887 56666777766666542  2


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhC---CCchhHHHHHhcCChHHHHH--Hhcc---------
Q 009665          147 SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAG---DSPKCRDLVLSNGALMPLLA--QFNE---------  210 (529)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~i~~l~~--~l~~---------  210 (529)
                      ......+++ .+.|.|.+.+...  ...+|..|+.+|+-++.   ..+......++  .+..+..  ....         
T Consensus       120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~  196 (309)
T PF05004_consen  120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAA  196 (309)
T ss_pred             CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccC
Confidence            233344443 4578888888763  45677777777777652   22221111111  2222211  1111         


Q ss_pred             chhHHHHHHHHHHHhhhhcCCCCC-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009665          211 HAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (529)
Q Consensus       211 ~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~  270 (529)
                      ..++.+...|+.+.+-|...-+.. ........+|.|..+|.++|.+|+..|..+|.-|..
T Consensus       197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            113457777776666665544332 223457789999999999999999999999987753

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.04  E-value=0.068  Score=57.63  Aligned_cols=147  Identities=19%  Similarity=0.185  Sum_probs=116.1

Q ss_pred             hhhhchHHHHHHhhc----cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhh
Q 009665          237 EQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIV  311 (529)
Q Consensus       237 ~~~~~~l~~L~~ll~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~  311 (529)
                      ..+..+.|.++...+    ..+|+++..|.-+|+.+..-+..    +.+ .-++.|+..+. ++++.+|..+.-.+|-++
T Consensus       915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDla  989 (1251)
T KOG0414|consen  915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLA  989 (1251)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchh
Confidence            344677888888885    45899999999999998866543    333 45688899986 789999999999999998


Q ss_pred             cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHH
Q 009665          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  391 (529)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~a  391 (529)
                      -..+....     ..-+.|...|.++ ++.+|+.|..+|+++...+-     +--.|.++.+..++.+++..++.-|-..
T Consensus       990 v~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen  990 VRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSF 1058 (1251)
T ss_pred             hhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHH
Confidence            76664332     4567788899998 99999999999999987521     2236889999999999999999988877


Q ss_pred             HHHHhcCC
Q 009665          392 ISNATSGG  399 (529)
Q Consensus       392 L~nl~~~~  399 (529)
                      ...++..+
T Consensus      1059 F~Els~k~ 1066 (1251)
T KOG0414|consen 1059 FKELSSKG 1066 (1251)
T ss_pred             HHHhhhcc
Confidence            77776655

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.04  E-value=0.029  Score=46.69  Aligned_cols=129  Identities=13%  Similarity=0.100  Sum_probs=100.4

Q ss_pred             HHHHHhCcHHHHHHhcCCCC------cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHH
Q 009665          277 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT  349 (529)
Q Consensus       277 ~~~~~~~~~~~L~~lL~~~~------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~  349 (529)
                      ..++..+++..|+.++.++.      ..+...++.++..+..+.- .....++..++..+...+.... +..+...|...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45777899999999997765      3567778888888877532 2334555667788888886653 67899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 009665          350 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  406 (529)
Q Consensus       350 L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  406 (529)
                      |-++...++.....+-+.=-++.|+..|...+++++..|...+-.+...+++...+.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~  140 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKE  140 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            999999877766666665569999999999999999999999999988877665554

>PRK14707 hypothetical protein; Provisional

Probab=97.03  E-value=0.86  Score=52.69  Aligned_cols=399  Identities=17%  Similarity=0.144  Sum_probs=212.8

Q ss_pred             HHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           73 LPAMVAGVW--SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        73 l~~l~~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      +.-+++..+  .++..-+ .++..|...+..+ ....+.+-..|+...|-.+-+.+++++.+..+...-..++. .+..+
T Consensus       165 ~~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHH
Confidence            334444443  2333333 3444555545443 23344444445555555555667767776666555555555 44444


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          151 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWAL-GNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      ..+ +...+...+..|+. ++...-.+++.++ ..++ +.+..+..+-.. .+...++-|.+-.+..+...+...|..=.
T Consensus       242 ~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl  318 (2710)
T PRK14707        242 NEL-KPQELGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL  318 (2710)
T ss_pred             HhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence            443 33345555666655 5554544555444 4444 444455544332 24445555656677777776666655433


Q ss_pred             cCCCCCchhhhhchHHHHHHhh-ccCChHHHHHHHHHHH-HhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009665          229 RGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~  306 (529)
                      .+++..........+..++..| +-+|..+...+..+|. .+++.. +..+.+--.|+-..|-.+-+-++..+...|...
T Consensus       319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~-~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADP-ELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCH-hhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            3332222222222222233333 3355555555555554 455443 333333333554444455556777777777777


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHHh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHH
Q 009665          307 VGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (529)
Q Consensus       307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~  385 (529)
                      |+.-..++.+....+ +...+..++.-| +-+ +..+...++..|..-...+.+.++.+-..++...|-.+-+-+|..+.
T Consensus       398 LA~~l~~d~~l~~~~-~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c  475 (2710)
T PRK14707        398 LAEHVVDDLELRKGL-DPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPIC  475 (2710)
T ss_pred             HHHHhccChhhhhhc-chhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence            766666666555544 444444444444 556 66666777777766666656666555444444444344445677888


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHH-HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh
Q 009665          386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV-CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  464 (529)
Q Consensus       386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~-~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~  464 (529)
                      ..|+.+|..-... +++..+.|--.++...|-.+-+.++...... +.+.-..+..-.             .....|...
T Consensus       476 ~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-------------~l~~~~~~~  541 (2710)
T PRK14707        476 GQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-------------QLRKAFDAH  541 (2710)
T ss_pred             HHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-------------hhhhhhhhH
Confidence            7777777665554 4455565555566667777777777553333 333333333111             124444445


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          465 EGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       465 g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      +....+..|..+++.+....|..-|...+.
T Consensus       542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~  571 (2710)
T PRK14707        542 QVVNTLKALSKWPDKQLCAVAASGLAERLA  571 (2710)
T ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence            556667777888888877777666666554

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.026  Score=55.86  Aligned_cols=155  Identities=15%  Similarity=0.190  Sum_probs=106.1

Q ss_pred             HHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHh-cCCCCcchHHHHHHHHHHhhcCChhhHHHHHh
Q 009665          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  323 (529)
Q Consensus       245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  323 (529)
                      .+-+++.+.|+-.+.....++.---.+..       ..|++..++.. .++.+..|+..|+-+||-+|..+.        
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            45567777777777776665542211111       12677888888 677889999999999999987543        


Q ss_pred             cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHH
Q 009665          324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ  403 (529)
Q Consensus       324 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~  403 (529)
                       ..++..+++|..++++.||...+.+|+-.|+++-.+.       .+..|-.++.+...-||+.|+.+++-+...++++.
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence             4566778888777799999999999999888754432       34455555667777899999999998887665443


Q ss_pred             HHHHHHcCChHHHHhccCCCC
Q 009665          404 IKFLVSQGCIKPLCDLLNCPD  424 (529)
Q Consensus       404 ~~~l~~~~~l~~L~~lL~~~~  424 (529)
                      -...  .++.+.+.+++...+
T Consensus       657 np~v--~~I~k~f~~vI~~Kh  675 (926)
T COG5116         657 NPNV--KRIIKKFNRVIVDKH  675 (926)
T ss_pred             ChhH--HHHHHHHHHHHhhhh
Confidence            2221  234555555554433

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.02  E-value=0.013  Score=52.83  Aligned_cols=187  Identities=16%  Similarity=0.152  Sum_probs=122.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCChhh--HHhhcCChHHHHHh-------hcCCC-C---hHHHHHHHHHHHHHhcCChhhH
Q 009665           84 DRNIQLDATTQFRKLLSIERSPPIN--EVIQSGVVPRFIEF-------LSRDD-F---PQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        84 ~~~~~~~a~~~l~~lls~~~~~~~~--~~i~~g~i~~Li~l-------L~~~~-~---~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      +++.+..|+..|.+-...  .+...  ..-.-|.+..|++=       ++.+. +   ..-...|+..|..+|+ +|+.+
T Consensus         8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr   84 (262)
T PF04078_consen    8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred             CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence            577899999999886543  23232  22355666666542       23221 1   1334566667777887 89999


Q ss_pred             HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHH
Q 009665          151 RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  224 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  224 (529)
                      ..++++.+.-.|..+|..     +.+.+|-.++..+|.+.. ++++.-..+...++++..++.+ ..++.-.+..|...+
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl  163 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL  163 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence            999999987777777754     347789999999999984 5566778888999999999999 555555666677776


Q ss_pred             hhhhcCC--------CCCchhhhhchHHHHHH-hhccCChHHHHHHHHHHHHhccCCch
Q 009665          225 SNFCRGK--------PQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTND  274 (529)
Q Consensus       225 ~~l~~~~--------~~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~L~~l~~~~~~  274 (529)
                      ..+..++        ....+..+..++..++. +...+++.+...+++|...|++++..
T Consensus       164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra  222 (262)
T PF04078_consen  164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA  222 (262)
T ss_dssp             HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred             HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence            6665543        11223334455554443 34467889999999999999988753

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.88  E-value=0.015  Score=59.97  Aligned_cols=244  Identities=14%  Similarity=0.066  Sum_probs=157.9

Q ss_pred             cCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHH
Q 009665          144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW  222 (529)
Q Consensus       144 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  222 (529)
                      ......+...+..|+...|+++.....+..+-....+|. .+...+..      ....++++...+.......-....+.
T Consensus       491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~  564 (748)
T KOG4151|consen  491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALE  564 (748)
T ss_pred             hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHH
Confidence            334555666778899999999988777777777777776 33322211      12355666666633333333445777


Q ss_pred             HHhhhhcCCCCCc-hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH-hCcHHHHHHhcCCCCcchH
Q 009665          223 TLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVL  300 (529)
Q Consensus       223 ~L~~l~~~~~~~~-~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~v~  300 (529)
                      ++.||+....... ...-...++.+-.++..+++..+..++..+.||.-++.-....+.+ ...++....++........
T Consensus       565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~  644 (748)
T KOG4151|consen  565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE  644 (748)
T ss_pred             HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence            8888887763322 2333445555666777888999999999999999877655555555 2445566666666666667


Q ss_pred             HHHHHHHHHhhcCChhhHH-HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009665          301 IPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  379 (529)
Q Consensus       301 ~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~  379 (529)
                      ..++.++..|+......+. ..-.......+..++.++ +.+++......+.|+.....+....++....++.+..+-.-
T Consensus       645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~  723 (748)
T KOG4151|consen  645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKL  723 (748)
T ss_pred             hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            7777777766665554444 233446778889999998 99999999999999776656666666666666666655444


Q ss_pred             CChhHHHHHHHHHHH
Q 009665          380 AEFEIKKEAAWAISN  394 (529)
Q Consensus       380 ~~~~v~~~a~~aL~n  394 (529)
                      .....++.+..+|..
T Consensus       724 ~~a~~~~~~~~~l~~  738 (748)
T KOG4151|consen  724 NRAPKREDAAPCLSA  738 (748)
T ss_pred             hhhhhhhhhhhHHHH
Confidence            333444444444443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.88  E-value=0.065  Score=54.71  Aligned_cols=194  Identities=12%  Similarity=0.138  Sum_probs=140.7

Q ss_pred             hhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh
Q 009665          238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  317 (529)
Q Consensus       238 ~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~  317 (529)
                      +...++|.|++++...|..+|...+.-+-.....-.   ..+++..+++.+...+.+.++.++..++.++..++..-.. 
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~-  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK-  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-
Confidence            456799999999999999999988877776665543   4467778999999999999999999999999988863222 


Q ss_pred             HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       318 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                        ..+....+..+..+-.+. ...+|-....+++-++.......   .+.-....+.+.+.++-..-|..+.+++.....
T Consensus       403 --~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  403 --RNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             --hhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence              133434455555554444 77888888888888876522221   222234455556777777888899988887765


Q ss_pred             CCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009665          398 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  445 (529)
Q Consensus       398 ~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~  445 (529)
                      .-+...    +...+++.++-+.-+++..++..+..++...+...++.
T Consensus       477 ~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  477 YFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             ccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            433222    34568888999999999999999999888887666543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.072  Score=55.47  Aligned_cols=218  Identities=10%  Similarity=0.097  Sum_probs=134.9

Q ss_pred             cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHH
Q 009665          210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  289 (529)
Q Consensus       210 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~  289 (529)
                      .++.+.++..++..+..+.+...........+++......+.+.|+-|--+|+..+..||+-.++        .+++.+.
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~  808 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS  808 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence            44556788899999999998765555566678999999999999999998999988888765432        5667777


Q ss_pred             Hh-cCCC---CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009665          290 EL-LRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  365 (529)
Q Consensus       290 ~l-L~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  365 (529)
                      +. .+..   .++.+...-.++++++..-.+......+ -++..++..+.++ +...|..++..++++|.-........+
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            74 3222   1233444445666665433322222222 4566677777877 888899999999999873222222211


Q ss_pred             HcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCHHHHHHH--HHcCChHHHHhccCC-CCHHHHHHHHHHHHHH
Q 009665          366 EAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFL--VSQGCIKPLCDLLNC-PDPRIVTVCLEGLENI  438 (529)
Q Consensus       366 ~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l  438 (529)
                       ..++..++.+... +.+-+|+.|+..+..+..+-+.+....+  .-.+....+..+... ++..++..+..++..+
T Consensus       887 -~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  887 -HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             -HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence             1144555555554 4788999999999999887554443322  111233333444333 2333444444444444

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.75  E-value=0.047  Score=55.35  Aligned_cols=248  Identities=13%  Similarity=0.118  Sum_probs=130.0

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhc
Q 009665          162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP  241 (529)
Q Consensus       162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  241 (529)
                      ++.... .+...+..|...|.....+-|...+.     ++..++.++ .+.+..++..|...|..+|.+.+    ..+..
T Consensus        28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v~k   96 (556)
T PF05918_consen   28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHVSK   96 (556)
T ss_dssp             HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HHH
T ss_pred             HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHHhH
Confidence            334444 57889999999999999888877655     578899999 78899999999999999999752    34567


Q ss_pred             hHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC---CCCcchHHHHHHHHHHhhc-CChhh
Q 009665          242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVT-GDDMQ  317 (529)
Q Consensus       242 ~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~---~~~~~v~~~al~~L~~l~~-~~~~~  317 (529)
                      +...|+++|.++++.....+=++|..+...++.        +.+..++..+.   .+++.+|..++..|..-.. -....
T Consensus        97 vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~  168 (556)
T PF05918_consen   97 VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPEL  168 (556)
T ss_dssp             HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHH
Confidence            888999999999988777777777777654432        22333333332   4567788888877743332 11111


Q ss_pred             HH--HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHcCCHHHHHHHH------hcCChhHH
Q 009665          318 TQ--CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA----GNVNQIQAIIEAGIIGPLVNLL------LNAEFEIK  385 (529)
Q Consensus       318 ~~--~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~l~~L~~~l------~~~~~~v~  385 (529)
                      ..  .=.+.-++..+.++|.+- ..+--...+.+|..+-.    .+....+.+++     .+.+..      ...|++..
T Consensus       169 ~~p~~E~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~I  242 (556)
T PF05918_consen  169 LTPQKEMEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPESI  242 (556)
T ss_dssp             S---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHHH
T ss_pred             hhchHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHHH
Confidence            11  112223445566666553 32222333444444443    23444444443     222222      22244444


Q ss_pred             HHHHHHHHH----HhcC-CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          386 KEAAWAISN----ATSG-GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       386 ~~a~~aL~n----l~~~-~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      ...+.++..    +..+ .+.....++++. +++.+..+    +.+.+...|.++..+.
T Consensus       243 drli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s  296 (556)
T PF05918_consen  243 DRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELS  296 (556)
T ss_dssp             HHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHc
Confidence            434443333    2222 234566666553 55555554    2233334444444443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.75  E-value=0.46  Score=46.61  Aligned_cols=190  Identities=15%  Similarity=0.185  Sum_probs=120.0

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-Hhh--CC-CchhHHHHHhcCChHHHHHHhc
Q 009665          134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVA--GD-SPKCRDLVLSNGALMPLLAQFN  209 (529)
Q Consensus       134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~--~~-~~~~~~~~~~~~~i~~l~~~l~  209 (529)
                      .|+.+|-.+....+.....+.+.+++..++..+..+-....+.     . +..  .. .++.+.....       ...+ 
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------~~~i-   69 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE-----NKNEEAGSGIPPEYKESSVD-------GYSI-   69 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----ccccCCCCCCCCCccccccc-------cccc-
Confidence            4677777788777777888899999999999885432221111     0 110  00 0010000000       0001 


Q ss_pred             cchhHHHHHHHHHHHhhhhc-CC--CCCch-hhh-hchHHHHHHhhccC---ChHHHHHHHHHHHHhccCCchhHHHHHH
Q 009665          210 EHAKLSMLRNATWTLSNFCR-GK--PQPLF-EQT-RPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIE  281 (529)
Q Consensus       210 ~~~~~~~~~~a~~~L~~l~~-~~--~~~~~-~~~-~~~l~~L~~ll~~~---d~~v~~~a~~~L~~l~~~~~~~~~~~~~  281 (529)
                      ........+..+.++..+.. ..  ..... ... ..++..|..++.+.   .+.+...++..+..+..+.+.....+.+
T Consensus        70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e  149 (379)
T PF06025_consen   70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE  149 (379)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            11223445555555665555 22  11111 122 34555666677655   5789999999999999998888889999


Q ss_pred             hCcHHHHHHhcC-C---CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC
Q 009665          282 AGVCPRLVELLR-H---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN  337 (529)
Q Consensus       282 ~~~~~~L~~lL~-~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  337 (529)
                      .|+++.++..+. .   ++.++....-.+++.+|- +....+.+.+.+.++.++.++.++
T Consensus       150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence            999999999987 4   345566666677888887 455667788889999999999775

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.75  E-value=0.028  Score=58.80  Aligned_cols=156  Identities=18%  Similarity=0.183  Sum_probs=114.9

Q ss_pred             hhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHH--hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009665          238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (529)
Q Consensus       238 ~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  315 (529)
                      ....++|.+++.+.+.+..++..-+.+|+++..+-+.  +.+..  ..++|.|++.|+-++..++..++.++..+.....
T Consensus       864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            3478899999999988888899999999998876553  32322  2678899999999999999999999998887665


Q ss_pred             hhHHHHHhcCChHHHHHHhccCCc--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 009665          316 MQTQCIINHQALPCLLDLLTQNYK--KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  393 (529)
Q Consensus       316 ~~~~~~~~~~~l~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~  393 (529)
                      .....-++ -++|.++.+=.+..+  ..+|..|..++..+++--|...-......++..|+..|+++..-||++|..+=.
T Consensus       942 tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  942 TLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             ccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            44433333 466777776666521  578999999999999833333323333447888888898888889999987755


Q ss_pred             HHh
Q 009665          394 NAT  396 (529)
Q Consensus       394 nl~  396 (529)
                      +..
T Consensus      1021 ~W~ 1023 (1030)
T KOG1967|consen 1021 NWY 1023 (1030)
T ss_pred             hhh
Confidence            543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.73  E-value=1.4  Score=49.32  Aligned_cols=144  Identities=10%  Similarity=0.060  Sum_probs=99.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+..++..|..+...+|-.|+++|..+...+..--....+..|+...    +.+.. ..||.+|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            36677777888889999999999999987642222233333333333    34445 78999999999987776666554


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc--cchhHHHHHHHHHHHhhhhc
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~  229 (529)
                      ...     ..+..-+.++...||..++.++..+|...|.+-..      +..+.++|.  .+....++.-++.++.++..
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            443     33444455678899999999999999887764322      334444443  33344588999999999988


Q ss_pred             CC
Q 009665          230 GK  231 (529)
Q Consensus       230 ~~  231 (529)
                      .+
T Consensus       961 ~p  962 (1692)
T KOG1020|consen  961 TP  962 (1692)
T ss_pred             cC
Confidence            76

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.73  E-value=0.054  Score=45.10  Aligned_cols=127  Identities=13%  Similarity=0.101  Sum_probs=98.0

Q ss_pred             hHHHHHhcCChHHHHHHhccchh-----HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC--ChHHHHHHHH
Q 009665          191 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACW  263 (529)
Q Consensus       191 ~~~~~~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~  263 (529)
                      +...++..+++..|+.++..+..     .++...++.++..|..+.--........++..++..+...  |..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            34567788999999999965542     4777888888888888753233334456667777777643  7889999999


Q ss_pred             HHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh
Q 009665          264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  317 (529)
Q Consensus       264 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~  317 (529)
                      .|-+++.+++.....+.+.=-++.|+..|...++.++..|+..+..+....+..
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            999999988877777777677999999999999999999999888887665543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.71  E-value=0.083  Score=51.29  Aligned_cols=147  Identities=14%  Similarity=0.217  Sum_probs=103.0

Q ss_pred             ChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHH-HHHhccCCchhHHH
Q 009665          200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWA-LSYLSDGTNDKIQA  278 (529)
Q Consensus       200 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~-L~~l~~~~~~~~~~  278 (529)
                      ++..++..|.++.+...+..|+..|..+|...+..-+....-++..+++.-.+.++++...|... +.-++.+.+..   
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence            45667788866688899999999999999998766666666677777777666666665555544 33444444422   


Q ss_pred             HHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       279 ~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                           .+..+..++...+......++.++..++..-....-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus       407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 223344455456777777888888888875443222223347889999999998 89999999999987764

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.70  E-value=0.18  Score=47.95  Aligned_cols=171  Identities=16%  Similarity=0.123  Sum_probs=108.6

Q ss_pred             CChHHHH-HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchh
Q 009665          114 GVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKC  191 (529)
Q Consensus       114 g~i~~Li-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~  191 (529)
                      +++..|+ ..+.+++ +.+|..|+.||+-.+--+.+....     .++.+...+...+..++..|+.++..+.. ++...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4455554 6778888 899999999999999866544333     35778888877899999999999998873 22211


Q ss_pred             HHHHH-------hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc----cCChHHHHH
Q 009665          192 RDLVL-------SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----SNDDEVLTD  260 (529)
Q Consensus       192 ~~~~~-------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----~~d~~v~~~  260 (529)
                      -+...       ....+..+...+ .+.+++++..++..++.|........   ...++..|+-+--    .++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            11111       123455566666 55588899999999999877652222   1233333332222    224556666


Q ss_pred             HHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC
Q 009665          261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  295 (529)
Q Consensus       261 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~  295 (529)
                      ....+-..+...... +..+...+++.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            666666666665544 4455557777777766543

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.24  Score=48.60  Aligned_cols=258  Identities=15%  Similarity=0.135  Sum_probs=142.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC-CchhhhhchHH
Q 009665          167 SSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALP  244 (529)
Q Consensus       167 ~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~  244 (529)
                      .+++..++..|+.+|+|.+...| +++..  ..-.+..++.-|.++.+.++.-.+..+|..+...... ......-++.-
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial  345 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL  345 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence            34788999999999999998744 33322  2235666777775666788888888888777665422 22223344555


Q ss_pred             HHHHhhccCChHHHHHHHHHHHHhccCCchhHHH-HHH--hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHH
Q 009665          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-VIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI  321 (529)
Q Consensus       245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~-~~~--~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~  321 (529)
                      .+..+..+.+++.+..+...++.|+......-+. +.+  .+....++-.+.++++.+ ..||+..-..+.-+- ..+.+
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l-~rke~  423 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNL-VRKEL  423 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchh-HHHHH
Confidence            6777888999999999999988887543222222 221  122233444455666543 456666655554222 11111


Q ss_pred             HhcCChHHHHHHhccCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 009665          322 INHQALPCLLDLLTQNYKKSIKK-EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (529)
Q Consensus       322 ~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (529)
                      .  +.++.   .+ ...-...+. ..-|++ .+....++....+...     ...++++.-+.++..|..--.+...+..
T Consensus       424 ~--~~~q~---~l-d~~~~~~q~Fyn~~c~-~L~~i~~d~l~~~~t~-----~~~~f~sswe~vr~aavl~t~~~vd~l~  491 (533)
T KOG2032|consen  424 Y--HLFQE---SL-DTDMARFQAFYNQWCI-QLNHIHPDILMLLLTE-----DQHIFSSSWEQVREAAVLKTTRSVDSLV  491 (533)
T ss_pred             H--HHHhh---hh-HHhHHHHHHHHHHHHH-HHhhhCHHHHHHHHHh-----chhheecchHHHHHHHHHHHHHHHHHhH
Confidence            0  11111   11 110111111 111211 1222223333322221     2223333333555555555555555545


Q ss_pred             HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665          401 NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       401 ~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~  440 (529)
                      +..+.+.-...+...|..+...+-+++...+..|+..+..
T Consensus       492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            5555554444456778888888899999999999987754

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.67  E-value=0.083  Score=47.74  Aligned_cols=184  Identities=13%  Similarity=0.169  Sum_probs=116.1

Q ss_pred             ChHHHHHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHh-------cCCCC--c---chHHHHHHHHHHhhcCChhhHHH
Q 009665          254 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQC  320 (529)
Q Consensus       254 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~l-------L~~~~--~---~v~~~al~~L~~l~~~~~~~~~~  320 (529)
                      +++.++.|+.-|+.--+..++..-.+..+ |.+..|++=       +..+.  .   .-...|+..+..++. .++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            56778888777776655544544444443 655555432       23222  1   223456666666676 5566777


Q ss_pred             HHhcCChHHHHHHhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665          321 IINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (529)
Q Consensus       321 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  395 (529)
                      ++++++.-.|..+|+...    -..+|-.+..+++.+.. ++++.+..+++.+++|..+..|+.++.-.|..|...+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            889999888888886541    25688899999999998 5678888899999999999999999988999999999999


Q ss_pred             hcCCCHHHHHHHHHc--------CChHHHH-hccCCCCHHHHHHHHHHHHHHHH
Q 009665          396 TSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       396 ~~~~~~~~~~~l~~~--------~~l~~L~-~lL~~~~~~v~~~~l~aL~~l~~  440 (529)
                      ...  .....|+++.        .++..++ .+.+.+++.+.+.+.++...+..
T Consensus       167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd  218 (262)
T PF04078_consen  167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD  218 (262)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred             Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence            873  3444443321        1222222 22345566666666666655543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.65  E-value=0.25  Score=50.55  Aligned_cols=109  Identities=21%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC-Ch
Q 009665          237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DD  315 (529)
Q Consensus       237 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~  315 (529)
                      ..+.+.+..+++...+++..|+..+|..|..+++.....-+.+. .++...+..-+.+..+.||..|+.+|+.+-.. .+
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d  159 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD  159 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence            36678888888888899999999999999999875443323333 37778888888889999999999999998632 22


Q ss_pred             hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (529)
Q Consensus       316 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  352 (529)
                      +      +..+...+..+++..++++||+.|...|.+
T Consensus       160 e------e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  160 E------ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             C------cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            2      124566788888776699999988765553

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.65  E-value=0.0065  Score=47.78  Aligned_cols=70  Identities=19%  Similarity=0.324  Sum_probs=58.0

Q ss_pred             ChHHHHhcc-CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 009665          412 CIKPLCDLL-NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  490 (529)
Q Consensus       412 ~l~~L~~lL-~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~  490 (529)
                      ++..|+.+| .+.|+.+...++.=|+.++...+..            ...+++.|+-+.+-.|+.|+|++|+..|...++
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ  111 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ  111 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            478888988 4567888888999999999887543            677899999999999999999999999999988


Q ss_pred             hhC
Q 009665          491 TYW  493 (529)
Q Consensus       491 ~~~  493 (529)
                      ++.
T Consensus       112 klm  114 (119)
T PF11698_consen  112 KLM  114 (119)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.63  E-value=0.021  Score=61.37  Aligned_cols=161  Identities=20%  Similarity=0.227  Sum_probs=122.5

Q ss_pred             CChHHHHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 009665          114 GVVPRFIEFLSRD---DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP  189 (529)
Q Consensus       114 g~i~~Li~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~  189 (529)
                      .+.|.+++.+..+   ++|++|.+|.-+|+.+..-+.+....     .+|.|+..+. ++++.+|.+++-++|-++..-|
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            4678888887432   23999999999999998866555443     3699999998 6999999999999999986655


Q ss_pred             hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009665          190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (529)
Q Consensus       190 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~  269 (529)
                      ..-+.     .-+.|...| .+.++.++++|..+|++|...+    +..+.|.++.+..++.++++.|..-|=.....|+
T Consensus       994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            43222     345666777 7889999999999999998764    5667899999999999999999888887888787


Q ss_pred             cCCchhHHHHHHhCcHHHHHHhcCCC
Q 009665          270 DGTNDKIQAVIEAGVCPRLVELLRHP  295 (529)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~L~~lL~~~  295 (529)
                      ...+.. -     +++|-++.-|+++
T Consensus      1064 ~k~n~i-y-----nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTI-Y-----NLLPDILSRLSNG 1083 (1251)
T ss_pred             hcccch-h-----hhchHHHHhhccC
Confidence            654321 1     4556666666554

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.28  Score=48.08  Aligned_cols=181  Identities=14%  Similarity=0.191  Sum_probs=108.7

Q ss_pred             cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh----ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 009665          297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL----TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  372 (529)
Q Consensus       297 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~  372 (529)
                      +.-+..-...++.+.....-.     +.|.+.-++..+    .++ +..+|..|+..|+|.+.+.|+.+...... .+..
T Consensus       231 ~~~ritd~Af~ael~~~~~l~-----~~~lL~s~~~~la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~lda  303 (533)
T KOG2032|consen  231 ENGRITDIAFFAELKRPKELD-----KTGLLGSVLLSLANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDA  303 (533)
T ss_pred             ccchHHHHHHHHHHhCccccc-----ccccHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHH
Confidence            344444444555554432211     334444444433    455 77899999999999999866655544433 4555


Q ss_pred             HHHHHhc-CChhHHHHHHHHHHHHhcCCCHHH-HHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 009665          373 LVNLLLN-AEFEIKKEAAWAISNATSGGSNEQ-IKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN  450 (529)
Q Consensus       373 L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~-~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~  450 (529)
                      ++.-|-+ .+.+|..++..+|..+........ -.+++  .+--.+..+.++.+++++..+...++.+........+   
T Consensus       304 ii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e---  378 (533)
T KOG2032|consen  304 IIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE---  378 (533)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch---
Confidence            5555444 478899999999988876443222 22332  2455677788999999999999999988877643321   


Q ss_pred             CCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          451 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       451 ~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                          ..|.+.+.  +....+.--..++++.+...+...+..+++.
T Consensus       379 ----~~Fte~v~--k~~~~lllhl~d~~p~va~ACr~~~~~c~p~  417 (533)
T KOG2032|consen  379 ----EFFTEQVK--KRLAPLLLHLQDPNPYVARACRSELRTCYPN  417 (533)
T ss_pred             ----hhhHHHHH--hccccceeeeCCCChHHHHHHHHHHHhcCch
Confidence                11232221  1222222224667887777776666655443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.56  E-value=0.16  Score=49.38  Aligned_cols=173  Identities=10%  Similarity=0.094  Sum_probs=109.8

Q ss_pred             HHHHHHHH-HHhhhhcCCCCCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc
Q 009665          215 SMLRNATW-TLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  292 (529)
Q Consensus       215 ~~~~~a~~-~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL  292 (529)
                      +-+..|.. ...-+|.+.-.........++-.+++.|.+ .++.++..|++.|..++.+.+.+...-.+ -.+..+++.-
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa  380 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAA  380 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHH
Confidence            33444444 444455554444445556777788888887 68889999999999999876544221111 3445555555


Q ss_pred             CCCCcchHHHHHHHHH-HhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCH
Q 009665          293 RHPSPSVLIPALRTVG-NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGII  370 (529)
Q Consensus       293 ~~~~~~v~~~al~~L~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l  370 (529)
                      .+..+.+...|..... -++...+..        .+..+..++... +...-..+...+..++.. +.+....++. ++.
T Consensus       381 ~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-dia  450 (516)
T KOG2956|consen  381 KDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DIA  450 (516)
T ss_pred             hCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hhh
Confidence            6666666666555433 344433322        233445555455 555556666677777763 3444444443 499


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665          371 GPLVNLLLNAEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       371 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (529)
                      |.+++...+.+..||+.|++||..+...
T Consensus       451 P~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  451 PCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             hHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            9999999999999999999999988653

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.07  Score=55.57  Aligned_cols=224  Identities=13%  Similarity=0.103  Sum_probs=141.5

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009665          119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  198 (529)
Q Consensus       119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  198 (529)
                      .+..+.++. +.++-.++.-|..+...- +....+...+++...+..|.+.+.-+--.|+..+..+|.--+        .
T Consensus       732 ai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e  801 (982)
T KOG4653|consen  732 AISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------E  801 (982)
T ss_pred             HHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------h
Confidence            344455555 678999999999999833 455556677899999999999999999999998888875432        2


Q ss_pred             CChHHHHHHhccc---hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchh
Q 009665          199 GALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK  275 (529)
Q Consensus       199 ~~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~  275 (529)
                      .+++.+...-...   ..++.+-.+-.++.++..........+...++...+..++++|...+..++..++.+|......
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            3556665532111   1123333344666666655433444455677778888888888888999999999998653322


Q ss_pred             HHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhhHHHHHhc---CChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          276 IQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       276 ~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                      ....+. .++..++.+.. +++..+|+.|+..+..+..+.....-.+...   .....+........+..++..|+.++-
T Consensus       882 vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  882 VSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             hhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            222211 34445555543 4677899999999999988766443333321   222333333333325566666666654


Q ss_pred             HH
Q 009665          352 NI  353 (529)
Q Consensus       352 nl  353 (529)
                      .+
T Consensus       961 ei  962 (982)
T KOG4653|consen  961 EI  962 (982)
T ss_pred             HH
Confidence            33

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.38  E-value=0.031  Score=47.38  Aligned_cols=144  Identities=17%  Similarity=0.192  Sum_probs=101.4

Q ss_pred             HHHHHhcC--CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009665          286 PRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  363 (529)
Q Consensus       286 ~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  363 (529)
                      ..++..|.  ...+.++..++-++..+.   +.... -....+-+.+...+... +.+-...++.+++.+.-+.++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34444444  356788999999998885   22222 22334445666666666 6667888999999999988998888


Q ss_pred             HH-HcCCHHHHHHHHh--cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHH-HHHHHHHHHHH
Q 009665          364 II-EAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPR-IVTVCLEGLEN  437 (529)
Q Consensus       364 l~-~~~~l~~L~~~l~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~-v~~~~l~aL~~  437 (529)
                      ++ ..|+++.+..++.  .++..++..++.+|..-+.  +...+.+ +...+++.|..+++. ++.. ++..++-+|.+
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            77 6788999999999  6788999999999988876  3344444 455689999999964 4444 66666655543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.34  E-value=0.035  Score=39.61  Aligned_cols=66  Identities=24%  Similarity=0.358  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Q 009665          343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQG  411 (529)
Q Consensus       343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  411 (529)
                      .+.|.|+++++++. +.....+.+.++++.++++.... ...+|-.|.++|+-++.  +.+-.+.|.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999886 66677777789999999998864 67899999999999987  556666665554

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.28  E-value=0.0087  Score=47.07  Aligned_cols=73  Identities=25%  Similarity=0.351  Sum_probs=60.8

Q ss_pred             hchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009665          240 RPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (529)
Q Consensus       240 ~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~  312 (529)
                      ..++..|+.+|. +.|+.+..-||.=|+.++...+.....+-+.|+-..++.++.+++++|+..|+.++..+..
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            467788899994 5588889999999999998877776767777999999999999999999999999988765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.27  E-value=1.6  Score=44.48  Aligned_cols=287  Identities=13%  Similarity=0.098  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009665           85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  164 (529)
Q Consensus        85 ~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  164 (529)
                      -..|..|+..++..+..-.-.++..     ++..--.++..+..++.|..+...|..++.+.........     ..+..
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence            3466778888887775542222222     4445556776665478899999999998885543111111     12223


Q ss_pred             hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch--------------------------hHHHH
Q 009665          165 LLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSML  217 (529)
Q Consensus       165 lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~  217 (529)
                      .+.. ..++--..-+.+|..|+.++.+.  ...+.++.+.+...+....                          +....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            3333 33444445566777777666554  2245666666666662111                          22333


Q ss_pred             HHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccC---CchhHHHHHHhCcHHHHHHhc
Q 009665          218 RNATWTLSNFCRGK-PQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELL  292 (529)
Q Consensus       218 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL  292 (529)
                      ...+..+.++.... .......+.+++..++.+.. +..+.....++..+-.+..+   +.+...     .++..|....
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~  226 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV  226 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence            44445555555544 33333444555555555533 23344444555444444332   111111     2334444442


Q ss_pred             CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 009665          293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIE-  366 (529)
Q Consensus       293 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-  366 (529)
                      .  .......+-.++.|++...-.+       ..+..|..+|..+     .+..+.+.|+..+..+..+..+....-+. 
T Consensus       227 ~--~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~  297 (464)
T PF11864_consen  227 N--SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF  297 (464)
T ss_pred             c--ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence            2  2367778888999998643322       2355677777322     14556678888898888764222211121 


Q ss_pred             c--CCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          367 A--GIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       367 ~--~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                      .  -+++.+...++.+++.+-.+++..+.++..
T Consensus       298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            2  278889999998887787788888888873

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.26  E-value=0.033  Score=49.02  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC--------CCChHHHHHHHHHHHHHh
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--------DDFPQLQFEAAWALTNIA  143 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~--------~~~~~v~~~a~~~L~~l~  143 (529)
                      ....+++.+.+.....  ..+..|+..+.......++.+++.|++..|+++|..        ....+....++.||..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4456777787655433  555666666654433457888899999999998752        122578999999999999


Q ss_pred             cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009665          144 SGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVA  185 (529)
Q Consensus       144 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  185 (529)
                      . +......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8 4555666665 689999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.25  E-value=1.3  Score=47.50  Aligned_cols=210  Identities=15%  Similarity=0.184  Sum_probs=125.5

Q ss_pred             HhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---cchh----HHHHHHHH
Q 009665          154 IDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNAT  221 (529)
Q Consensus       154 ~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~~~~~a~  221 (529)
                      .+.|++..++.++.+     ....+....+..|...+.- +.+|..+++.++++.|+..+.   ....    ..+....+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            356889999888866     2345666666666665544 568999999999999999885   2222    45555555


Q ss_pred             HHHhhhhcCCCCCch-------------hhhhchHHHHHHhhcc----CChHHHHHHHHHHHHhccCCchhHHHHHHhCc
Q 009665          222 WTLSNFCRGKPQPLF-------------EQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  284 (529)
Q Consensus       222 ~~L~~l~~~~~~~~~-------------~~~~~~l~~L~~ll~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  284 (529)
                      .++-.+.........             .....-+..+++.+.+    .++.+....++.|.+|+.+..+..+.+++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            555444332211000             0122335566666654    368899999999999999988888877653  


Q ss_pred             HHHHHHhc--CCCCcchHHHHHHHHHHhhcCC------hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009665          285 CPRLVELL--RHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (529)
Q Consensus       285 ~~~L~~lL--~~~~~~v~~~al~~L~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  356 (529)
                      +...+.+=  +.....--...+.+++.++.+-      ....+.+++.|++...+..|... -+..        .+   .
T Consensus       271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~---~  338 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KN---T  338 (802)
T ss_pred             HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------cc---C
Confidence            22222321  1111111123466666666543      35567778888888888877654 3333        11   1


Q ss_pred             CHHHHHHHHHcCCHHHHHHHHh
Q 009665          357 NVNQIQAIIEAGIIGPLVNLLL  378 (529)
Q Consensus       357 ~~~~~~~l~~~~~l~~L~~~l~  378 (529)
                      ++......+....+|.++.+|.
T Consensus       339 ~s~eWk~~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  339 DSPEWKEFLSRPSLPYILRLLR  360 (802)
T ss_pred             CCHHHHHHhcCCcHHHHHHHHH
Confidence            2333455555666777776665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.24  E-value=0.56  Score=49.96  Aligned_cols=195  Identities=16%  Similarity=0.152  Sum_probs=119.3

Q ss_pred             HHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHH--HHHHhhccCCh-H
Q 009665          180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E  256 (529)
Q Consensus       180 ~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~L~~ll~~~d~-~  256 (529)
                      +++++....+.....+++.+++..+...+......++...+...+.+++...+..........+.  .+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45566777777778888999999999999766778889999999999988753333322222222  33334444444 7


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-hhHHHHHhcCChHH-HHHHh
Q 009665          257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPC-LLDLL  334 (529)
Q Consensus       257 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~-L~~lL  334 (529)
                      ....++..|+.+....++...                   ...+..+...+......-. ........ ..+.. +..++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~il  633 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVIND-RSFFPRILRIL  633 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhh-hhcchhHHHHh
Confidence            777777777777655432111                   1112222222222221111 11111222 23333 66666


Q ss_pred             ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 009665          335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISN  394 (529)
Q Consensus       335 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~n  394 (529)
                      ..+..+.....|.|++.+++...++....+.+.++++.+.+.-... ..+++.++...+.+
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  694 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES  694 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence            6655778899999999999998888888888888988887764433 44555555554443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.20  E-value=0.019  Score=54.69  Aligned_cols=108  Identities=16%  Similarity=0.189  Sum_probs=82.4

Q ss_pred             HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHH-
Q 009665          330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-  408 (529)
Q Consensus       330 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-  408 (529)
                      +...+++. ++.+|..|..++|-++--+.+...     ..++.+...+..++..++..|+.++..+....+........ 
T Consensus        32 I~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~  105 (298)
T PF12719_consen   32 ILPAVQSS-DPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD  105 (298)
T ss_pred             HHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence            44677888 889999999999998875454322     24667888887789999999999999998643333333222 


Q ss_pred             ------HcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009665          409 ------SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       409 ------~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~  443 (529)
                            ...+++.+...+.+.+++++..+.+++.+|+-.+.
T Consensus       106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~  146 (298)
T PF12719_consen  106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR  146 (298)
T ss_pred             cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence                  23567888899999999999999999999987654

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.04  E-value=1  Score=40.18  Aligned_cols=199  Identities=15%  Similarity=0.092  Sum_probs=125.3

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHh-------hcCC----CChHHHHHHHHHH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRD----DFPQLQFEAAWAL  139 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~l-------L~~~----~~~~v~~~a~~~L  139 (529)
                      +.+++++-.+.+  +..+..|+..+.+......+-..-.+-.-|....|++=       |..+    ..+.-...|+..|
T Consensus        26 dk~~~~i~~l~~--~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~Ll  103 (293)
T KOG3036|consen   26 DKAYQLILSLVS--PPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALL  103 (293)
T ss_pred             cchhhHHHHhhC--CchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHH
Confidence            346666655554  44566777777765432211111122233444444331       1111    1123456666667


Q ss_pred             HHHhcCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHHHhccchh
Q 009665          140 TNIASGTSENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFNEHAK  213 (529)
Q Consensus       140 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~  213 (529)
                      -.+++ .|+.+..++++.+--.|-.+|..     +.+-+|-.++..|+.+.. ++.++-..+...++++.+++.+ ..++
T Consensus       104 QcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim-e~GS  181 (293)
T KOG3036|consen  104 QCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM-ESGS  181 (293)
T ss_pred             HHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH-hccc
Confidence            77776 78999999988765555566643     568899999999999984 4455667788899999999999 6666


Q ss_pred             HHHHHHHHHHHhhhhcCCCC--------CchhhhhchHHHHH-HhhccCChHHHHHHHHHHHHhccCCc
Q 009665          214 LSMLRNATWTLSNFCRGKPQ--------PLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       214 ~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~l~~L~-~ll~~~d~~v~~~a~~~L~~l~~~~~  273 (529)
                      ...+..|..++..+..++..        ..+..+..++..++ ++.+.+++.+...++++..+|++++.
T Consensus       182 elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr  250 (293)
T KOG3036|consen  182 ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR  250 (293)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence            66677777777766655422        12222233444333 44456788999999999999998763

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.03  E-value=0.3  Score=47.86  Aligned_cols=156  Identities=12%  Similarity=0.162  Sum_probs=108.5

Q ss_pred             HHHHHHHHhc--CCCCChhhHHhh-cCChHHHHHhhcCCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009665           91 ATTQFRKLLS--IERSPPINEVIQ-SGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  165 (529)
Q Consensus        91 a~~~l~~lls--~~~~~~~~~~i~-~g~i~~Li~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  165 (529)
                      -++.+..+..  .......+.+++ ..+...|...+++..  -+.+-..|+.++..+....|..-..+.+.|+++.++..
T Consensus        80 lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~  159 (379)
T PF06025_consen   80 LLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDA  159 (379)
T ss_pred             HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHH
Confidence            3444444444  222334555667 566677777777654  26788999999999999899999999999999999998


Q ss_pred             hC-C---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhH------HHHHHHHHHHhhhhcCCCCCc
Q 009665          166 LS-S---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL------SMLRNATWTLSNFCRGKPQPL  235 (529)
Q Consensus       166 L~-~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~  235 (529)
                      +. .   ++.++....-.+|+.||-.... .+.+.+.+.++.+++.+......      +.....-..+-.|.++.|...
T Consensus       160 i~~~~i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk  238 (379)
T PF06025_consen  160 ITAKGILPSSEVLTSLPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLK  238 (379)
T ss_pred             HhccCCCCcHHHHHHHHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHH
Confidence            88 4   6788888888999999977664 57778889999999988432211      334444555667777765555


Q ss_pred             hhhhhchHHHHH
Q 009665          236 FEQTRPALPALE  247 (529)
Q Consensus       236 ~~~~~~~l~~L~  247 (529)
                      ......++..+-
T Consensus       239 ~~i~~~ii~~l~  250 (379)
T PF06025_consen  239 PDIIDAIIKILD  250 (379)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444333

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.99  E-value=0.29  Score=49.93  Aligned_cols=173  Identities=18%  Similarity=0.156  Sum_probs=119.9

Q ss_pred             hcCCCHHHHHHHHHHHH--HHhcCCCCChhhHHhhcCChHHHHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009665           80 VWSDDRNIQLDATTQFR--KLLSIERSPPINEVIQSGVVPRFIEFLSRD---DFPQLQFEAAWALTNIASGTSENTRVVI  154 (529)
Q Consensus        80 L~s~~~~~~~~a~~~l~--~lls~~~~~~~~~~i~~g~i~~Li~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~  154 (529)
                      +...+++.-..|...++  .++-+++      -+-+.+-|...+...+.   +++.++..|.-+|..+.+-+.+...   
T Consensus       862 IggtsEddf~da~~fikE~ElLyGek------svLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~---  932 (1128)
T COG5098         862 IGGTSEDDFVDAFFFIKEKELLYGEK------SVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS---  932 (1128)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhhchh------HHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH---
Confidence            34444445555555554  3343321      12234556666666551   2489999999999998875554433   


Q ss_pred             hCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009665          155 DHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  233 (529)
Q Consensus       155 ~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  233 (529)
                        ..+|.|+..+. +++|.+|.+|+-.++.++..-....+     ..-..|.+.| .+.+..+++.++.++.+|....  
T Consensus       933 --ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLyrrL-~De~~~V~rtclmti~fLilag-- 1002 (1128)
T COG5098         933 --EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLYRRL-GDEDADVRRTCLMTIHFLILAG-- 1002 (1128)
T ss_pred             --HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc--
Confidence              34699999998 69999999999999988743221111     1345677777 7788999999999999887653  


Q ss_pred             CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009665          234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~  273 (529)
                        ...+.|-++.+..+|.++|..+...|-..+..++..+.
T Consensus      1003 --q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098        1003 --QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred             --ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence              23457888999999999999998888888888886554

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.94  E-value=2.1  Score=46.00  Aligned_cols=240  Identities=16%  Similarity=0.178  Sum_probs=142.7

Q ss_pred             hchHHHHHHhhcc-----CChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC----CCC----cchHHHHHHH
Q 009665          240 RPALPALERLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPS----PSVLIPALRT  306 (529)
Q Consensus       240 ~~~l~~L~~ll~~-----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~----~~~----~~v~~~al~~  306 (529)
                      .+++..++.++.+     .+.+....++..|.+.+.-. .+.+.+++.++++.|+..+.    .+.    ..+....+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            3556666666653     23456666777777777664 44577888999999888873    333    5677777777


Q ss_pred             HHHhhcCChhhHHHH----H--------hcCChHHHHHHhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 009665          307 VGNIVTGDDMQTQCI----I--------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  371 (529)
Q Consensus       307 L~~l~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~  371 (529)
                      +..+...........    .        +..-+..++..+.++.   ++.+....+.+|.+++.++++..+.+++.  +.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence            777765322111000    0        1122566666665542   57888999999999999999988888873  33


Q ss_pred             HHHHHHhcC--ChhHHHHHHHHHHHHhcCC-----CHHHHHHHHHcCChHHHHhccCCCC--------HH--------HH
Q 009665          372 PLVNLLLNA--EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCPD--------PR--------IV  428 (529)
Q Consensus       372 ~L~~~l~~~--~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~~--------~~--------v~  428 (529)
                      ..+++=.-+  ...--...+.+++.++.+.     .......+++.|++...+++|...-        ++        -.
T Consensus       273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            333322111  1010123355566665432     2355677888999988888774321        22        23


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCHHHHHHHHHHHHhhCCC
Q 009665          429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~  495 (529)
                      ..+|..|.-+......             .+.+...+++..+..|- -++...|-..|.++|+.+-+.
T Consensus       353 p~iL~lL~GLa~gh~~-------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  353 PYILRLLRGLARGHEP-------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             HHHHHHHHHHHhcCHH-------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence            3455555555543321             22233456777777774 344667888888888877653

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.92  E-value=0.5  Score=47.39  Aligned_cols=110  Identities=21%  Similarity=0.199  Sum_probs=82.2

Q ss_pred             hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009665          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (529)
Q Consensus       236 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  315 (529)
                      ...+.+.+..++..+.++|..|+..+|..|..+++.-.+ +...+-.+++..|.+-+-+..+.|+..|+.+|..+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            456678888899999999999999999999999876543 3445555888888888888899999999999998864332


Q ss_pred             hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       316 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                      ...     ..+...+..+++..++.+||..|..-+.
T Consensus       165 nee-----n~~~n~l~~~vqnDPS~EVRr~allni~  195 (885)
T COG5218         165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLNIS  195 (885)
T ss_pred             ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence            211     1233456777766558889988765443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.92  E-value=1.2  Score=39.83  Aligned_cols=141  Identities=10%  Similarity=0.148  Sum_probs=99.7

Q ss_pred             chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHH
Q 009665          298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGP  372 (529)
Q Consensus       298 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~  372 (529)
                      .-...|+..+..++++ ++.+..++++.+--.+..+|...    ....+|..+..+|+.+.. ++.+.+..++..+++|.
T Consensus        94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl  172 (293)
T KOG3036|consen   94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL  172 (293)
T ss_pred             chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence            3445566666666664 55566677777766777777433    256789999999999998 56777788889999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc--------CCh-HHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          373 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--------GCI-KPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       373 L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~l-~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      ++..++.++...|.-|...+..+....  ....|+++.        -++ +....+.+.+++.+...++.+..++...
T Consensus       173 CLrime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  173 CLRIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999988643  333333221        112 2344455677888888888777766543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.86  E-value=0.013  Score=34.14  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=26.1

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (529)
                      ++|.+++++.+++++||..|+++|+.++.+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            378999999999999999999999999753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.77  E-value=0.21  Score=53.40  Aligned_cols=192  Identities=15%  Similarity=0.129  Sum_probs=130.9

Q ss_pred             chHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcCChhhHH
Q 009665          241 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQ  319 (529)
Q Consensus       241 ~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~  319 (529)
                      .+-+.+..-+.+.+..-+..++..+............ -...+.+-.++.+. .+.+..+...++.+|.-++........
T Consensus       253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            3344455555577777888888888877655431111 11124444444443 456778888999999999987654433


Q ss_pred             HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      .. ..++++.++.-+... ...++..+..++-.++..++-       ..+.+.+...+.++++.++.++...+.......
T Consensus       332 ~~-~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~  402 (815)
T KOG1820|consen  332 KY-AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKL  402 (815)
T ss_pred             HH-HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence            33 337888899999887 777887777666666553222       126788889999999999999888888877654


Q ss_pred             CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       400 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      ++.....-.-.++++.++....+.+.+|+.+++.++..+++.-
T Consensus       403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~  445 (815)
T KOG1820|consen  403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH  445 (815)
T ss_pred             CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence            4222222122457888899889999999999999999887653

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.76  E-value=0.013  Score=34.07  Aligned_cols=29  Identities=28%  Similarity=0.483  Sum_probs=25.7

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIAS  144 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~  144 (529)
                      ++|.+++++++++ +++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            4789999999999 9999999999999985

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.71  E-value=2.8  Score=42.68  Aligned_cols=254  Identities=13%  Similarity=0.075  Sum_probs=129.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009665           83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF  162 (529)
Q Consensus        83 ~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  162 (529)
                      ...+.|..++..+..++..... .. ....    ..+...+..+..++--..-+.+|..++.+..+.  ...+.++.+.|
T Consensus        41 ~p~e~R~~~~~ll~~~i~~~~~-~~-~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L  112 (464)
T PF11864_consen   41 QPSEARRAALELLIACIKRQDS-SS-GLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFL  112 (464)
T ss_pred             CCHHHHHHHHHHHHHHHHcccc-cc-HHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHH
Confidence            3467888888888888765422 01 1111    122333333322322223334444555533333  22566777877


Q ss_pred             HHhhCCC---------------------------CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHH
Q 009665          163 VRLLSSP---------------------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS  215 (529)
Q Consensus       163 ~~lL~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~  215 (529)
                      ...+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+.....+..
T Consensus       113 ~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~  192 (464)
T PF11864_consen  113 LSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED  192 (464)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH
Confidence            7766321                           1222333444445554433221111111223444444443344444


Q ss_pred             HHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-
Q 009665          216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-  294 (529)
Q Consensus       216 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-  294 (529)
                      ....++..+-.+.... ..+......++..|.......  +....+-.++.||+......       ..+..|+.+|.+ 
T Consensus       193 di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~  262 (464)
T PF11864_consen  193 DIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSP  262 (464)
T ss_pred             HHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHccc
Confidence            4455555555444433 111222334444444443222  55556666777777543321       346777888832 


Q ss_pred             -----CCcchHHHHHHHHHHhhcCChhhHHHHHhc---CChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          295 -----PSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       295 -----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                           .+..+...|+..++.+..+.......-+..   -+++.+...++.. +..+-.+....+.++..
T Consensus       263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  263 DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD  330 (464)
T ss_pred             CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence                 234567789999999988763322222221   2678888888877 77777777777777763

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=3.4  Score=43.01  Aligned_cols=299  Identities=15%  Similarity=0.077  Sum_probs=166.8

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHH
Q 009665          134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG--DSPKCRDLVLSNGALMP  203 (529)
Q Consensus       134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~i~~  203 (529)
                      +|+.++..+....++.+    -.|+++.+...|..        .+..-.+.|++.++++..  ..+.....+++.-+++.
T Consensus       389 aal~fl~~~~sKrke~T----fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h  464 (970)
T COG5656         389 AALFFLIISKSKRKEET----FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH  464 (970)
T ss_pred             HHHHHHHHHhcccchhh----hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            45555555554322221    24888999988832        245567788888888764  22222233344444555


Q ss_pred             HHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhC
Q 009665          204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  283 (529)
Q Consensus       204 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  283 (529)
                      ++..+ ++...-++..+|..++.+..+-  +.......+......++.+++-.|+..|.-++..+..+.  .....+...
T Consensus       465 v~P~f-~s~ygfL~Srace~is~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sah  539 (970)
T COG5656         465 VIPAF-RSNYGFLKSRACEFISTIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAH  539 (970)
T ss_pred             hhHhh-cCcccchHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhh
Confidence            55555 5555667888999999885442  333344566677778888888899999999998887654  233334433


Q ss_pred             c---HHHHHHhcCCCCcchHHHHHHH-HHHhhcCChhhHHHHHh---cCChHHHHHHhccCC-----chhHHHHHHHHHH
Q 009665          284 V---CPRLVELLRHPSPSVLIPALRT-VGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNY-----KKSIKKEACWTIS  351 (529)
Q Consensus       284 ~---~~~L~~lL~~~~~~v~~~al~~-L~~l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~  351 (529)
                      +   ++.|+.+-..-+-++...+... ++..+..-......+..   ...+.....++..+.     ..+-+..|...|.
T Consensus       540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~  619 (970)
T COG5656         540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR  619 (970)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence            3   3334444333233333333222 22222211111111111   122223333332220     1122344555555


Q ss_pred             HHhc------CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCH
Q 009665          352 NITA------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP  425 (529)
Q Consensus       352 nl~~------~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~  425 (529)
                      .+..      ..+...+.+.. ...|.+-=++.+.-.++-.+|+..+-+++... .+...  +.-|+.+.+.+++.+..+
T Consensus       620 T~~smiLSlen~p~vLk~le~-slypvi~Filkn~i~dfy~Ea~dildg~tf~s-keI~p--imwgi~Ell~~~l~~~~t  695 (970)
T COG5656         620 TIESMILSLENRPLVLKYLEV-SLYPVISFILKNEISDFYQEALDILDGYTFMS-KEIEP--IMWGIFELLLNLLIDEIT  695 (970)
T ss_pred             HHHHHHHhcccchHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HHhhh--hhhHHHHHHHhcccccch
Confidence            4443      34444444433 36666666677777788889999888876532 12222  223678888888888775


Q ss_pred             -HHHHHHHHHHHHHHHhhhhh
Q 009665          426 -RIVTVCLEGLENILKAGEAE  445 (529)
Q Consensus       426 -~v~~~~l~aL~~l~~~~~~~  445 (529)
                       .-...+..+|.|++.+|.+.
T Consensus       696 ~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         696 AVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             hhhHHHHHHHHHHHHHhCccc
Confidence             66677888999999998543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.62  E-value=0.3  Score=44.49  Aligned_cols=101  Identities=21%  Similarity=0.269  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHh
Q 009665          385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD  463 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~  463 (529)
                      ...|+.+|--++-- .+.....+.+...+..|+++|. ...+.+...++.+|..++-....            ....|++
T Consensus       108 i~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~------------N~r~FE~  174 (257)
T PF08045_consen  108 IALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE------------NQRDFEE  174 (257)
T ss_pred             HHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH------------HHHHHHH
Confidence            34455666555544 4566677788899999999995 46688999999999998877653            3678999


Q ss_pred             hchHHHHHHHhcC--CCHHHHHHHHHHHHhhCCCCCC
Q 009665          464 AEGLEKIENLQSH--DNTEIYEKAVKILETYWVEEDE  498 (529)
Q Consensus       464 ~g~~~~l~~L~~~--~~~~v~~~a~~il~~~~~~~~~  498 (529)
                      .+|+..+-.+..+  -+.+++-+....|--|...|.+
T Consensus       175 ~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~  211 (257)
T PF08045_consen  175 LNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETP  211 (257)
T ss_pred             hCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCC
Confidence            9999999999654  5678999999999888886654

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.59  E-value=0.092  Score=44.50  Aligned_cols=148  Identities=18%  Similarity=0.152  Sum_probs=96.0

Q ss_pred             CChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHH
Q 009665          325 QALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ  403 (529)
Q Consensus       325 ~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~  403 (529)
                      ..++.++..|.. +..+++|..+.-+++.+.....+.    ...-+-+.+-..+..++.+-...+..++..+.-. .++.
T Consensus         3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~----~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv   77 (157)
T PF11701_consen    3 DELDTLLTSLDMLRQPEEVRSHALVILSKLLDAAREE----FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDV   77 (157)
T ss_dssp             CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHH
T ss_pred             HHHHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHH
Confidence            345566666654 337789999999998885221121    1221333444445555566777889999988776 4555


Q ss_pred             HHHH-HHcCChHHHHhccC--CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCH
Q 009665          404 IKFL-VSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNT  479 (529)
Q Consensus       404 ~~~l-~~~~~l~~L~~lL~--~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~  479 (529)
                      ...+ ...|+++.+..+..  ..+..+...++++|..-+....             -+..+. ..+++.|+.+. .++++
T Consensus        78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~-------------~r~~I~-~~~~~~L~~~~~~~~~~  143 (157)
T PF11701_consen   78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS-------------CRTFIS-KNYVSWLKELYKNSKDD  143 (157)
T ss_dssp             HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH-------------HHHCCH-HHCHHHHHHHTTTCC-H
T ss_pred             HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH-------------HHHHHH-HHHHHHHHHHHccccch
Confidence            5554 46788999999998  7888888888888875543332             133343 55688899887 56666


Q ss_pred             H-HHHHHHHHHHh
Q 009665          480 E-IYEKAVKILET  491 (529)
Q Consensus       480 ~-v~~~a~~il~~  491 (529)
                      . ++.+|.-.|-+
T Consensus       144 ~~ir~~A~v~L~K  156 (157)
T PF11701_consen  144 SEIRVLAAVGLCK  156 (157)
T ss_dssp             H-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            6 78888776654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.56  E-value=0.13  Score=43.76  Aligned_cols=147  Identities=10%  Similarity=0.057  Sum_probs=88.7

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (529)
                      .+++.|+.+|+.+.++.+|.+++++|+.|..-+|...+.+....  +.-.  -...+......... ..++....    +
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~-~~~~~~~~----e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLP-MMGISPSS----E   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHh-hccCCCch----H
Confidence            36778888998876699999999999999997776555332211  1000  01111112221111 11111112    2


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~  269 (529)
                      ...-..++..|+..|++..-..-...++.++.++...-..........++|.++..+++.++..++..++-|+.|.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2233346788888885444344444566666666644434446778899999999999777788888877777664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.12  Score=51.42  Aligned_cols=151  Identities=23%  Similarity=0.330  Sum_probs=100.7

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q 009665          121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG  199 (529)
Q Consensus       121 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~  199 (529)
                      +++.+.+ +-+|+..+..+..--.++.       +.|++..|+.. .+..+.++|..|+.+|+-+|.+++.         
T Consensus       523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            3444444 5666665555443322221       24667777776 6668899999999999999976653         


Q ss_pred             ChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHH
Q 009665          200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  279 (529)
Q Consensus       200 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~  279 (529)
                      .+...+.+|..+.+..++...+.+|.-.|.+...      ..++..|-.++.+...-|+..|+-+++-+.....+....-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            4667788887788999999999999988887521      2355666777778888899999999988764333222211


Q ss_pred             HHhCcHHHHHHhcCCC
Q 009665          280 IEAGVCPRLVELLRHP  295 (529)
Q Consensus       280 ~~~~~~~~L~~lL~~~  295 (529)
                      +. ++...+.+.+.+.
T Consensus       660 v~-~I~k~f~~vI~~K  674 (926)
T COG5116         660 VK-RIIKKFNRVIVDK  674 (926)
T ss_pred             HH-HHHHHHHHHHhhh
Confidence            11 4555566665443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.49  E-value=0.34  Score=51.83  Aligned_cols=188  Identities=14%  Similarity=0.102  Sum_probs=132.8

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009665          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ  238 (529)
Q Consensus       159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  238 (529)
                      .+.+..-+.++++.-|..++..+.-+..... ........+.+-.++.....+.+..+...++.+|..++..-......+
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            3445555666778888888888888775543 111112223455556666577788888899999998888764455556


Q ss_pred             hhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh-h
Q 009665          239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-Q  317 (529)
Q Consensus       239 ~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~-~  317 (529)
                      ...++|.++.-+......++..+..++-.++....       -..+.+.+...+.+.++.++..+...+.......+. .
T Consensus       334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~  406 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT  406 (815)
T ss_pred             HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence            67888999999988888887777777666554221       114567888999999999999988888888765541 1


Q ss_pred             HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       318 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      ...---.++++.++....+. +..||..|..+++.+..
T Consensus       407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            11111236788888888888 89999999999988776

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.49  E-value=0.47  Score=48.73  Aligned_cols=257  Identities=13%  Similarity=0.159  Sum_probs=164.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCC-hHHHHHHHHHHHHHhcCChhhHHH
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      -.++..+.-.+.+.+..-...|.+.+..    .-+.++...++|.|+..+..++. .++. ..+.-++..... .+    
T Consensus       257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~l-tpl~k~~k~ld~-~e----  326 (690)
T KOG1243|consen  257 LLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFL-TPLFKLGKDLDE-EE----  326 (690)
T ss_pred             HHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhh-hHHHHhhhhccc-cc----
Confidence            3445555556666665555555554422    23455666678888877766541 2222 222222222221 22    


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009665          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  232 (529)
                       +..+++|.|++++..++..+|-.-+.-+-.....   ..+..++..+++.+..-+ .++++.++...+.++..|+..-.
T Consensus       327 -yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~  401 (690)
T KOG1243|consen  327 -YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLS  401 (690)
T ss_pred             -cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhc
Confidence             5667899999999999999998777666665543   344566667788888888 78889999998888887775421


Q ss_pred             CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCc-HHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009665          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLRHPSPSVLIPALRTVGNIV  311 (529)
Q Consensus       233 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-~~~L~~lL~~~~~~v~~~al~~L~~l~  311 (529)
                      ..  ......+..+..+-.+++..++.+..-|++.++.+....    ...++ ...+..-+.++-..-|..++..+....
T Consensus       402 ~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  402 KR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             hh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence            11  233456666666666677889999888888888664322    12233 333444566776777887777776655


Q ss_pred             cCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      ...+.   .-+...++|.+..+..++ +..+|..|..++...-.
T Consensus       476 ~~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  476 EYFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             cccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence            43332   234457889999888888 88888888877765544

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.41  E-value=1.7  Score=40.37  Aligned_cols=207  Identities=14%  Similarity=0.130  Sum_probs=143.5

Q ss_pred             HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh----hHHHHH-hcCChHHHHHHhccCCc-hhHHHHHHHHH
Q 009665          277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCII-NHQALPCLLDLLTQNYK-KSIKKEACWTI  350 (529)
Q Consensus       277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~-~~~~l~~L~~lL~~~~~-~~v~~~a~~~L  350 (529)
                      +.+.++|++..++..+...+.+.+..++.+..++-...-.    ....+. +..++..++..   ..+ +++-..+...+
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence            4577789999999999998888888999998888653221    112221 22333333333   212 44444444445


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCC----hHHHHhccCCCCHH
Q 009665          351 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC----IKPLCDLLNCPDPR  426 (529)
Q Consensus       351 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~----l~~L~~lL~~~~~~  426 (529)
                      ..+.+. +.....+..+.-+.....++..+..++...|......+.........++|.. +.    .+....++.+++.-
T Consensus       150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~-n~d~ff~e~~~~Ll~s~Nyv  227 (342)
T KOG1566|consen  150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIR-NYDNFFAEVYEKLLRSENYV  227 (342)
T ss_pred             HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHh-ChhhhHHHHHHHHhccccee
Confidence            555444 5555666778889999999999999999999999999887654444444443 23    44467788899999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCC
Q 009665          427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED  497 (529)
Q Consensus       427 v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  497 (529)
                      ++..++.+++.++.......         .....+.+-.-+..+-.|+.+++..++-.|.++...+.-...
T Consensus       228 tkrqs~kllg~llldr~N~~---------~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSA---------VMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHH---------HHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            99999999999987655433         246666656667788888888888999888888876665443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.32  E-value=0.25  Score=54.85  Aligned_cols=166  Identities=16%  Similarity=0.122  Sum_probs=107.7

Q ss_pred             HHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCc
Q 009665          218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP  297 (529)
Q Consensus       218 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~  297 (529)
                      ..+.|+...++...+  -.....+.+..++..+..+...+|..|+.||+.+...++..   +....+-..+..-+.+...
T Consensus       795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa  869 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA  869 (1692)
T ss_pred             hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence            344555555544421  11223567778888888888999999999999999876532   2333444445555667788


Q ss_pred             chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009665          298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  377 (529)
Q Consensus       298 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l  377 (529)
                      .||..|+..+|..+...++....     ....+..-+.++ ...||+.+...+..+|...|+.-. +.+  +...++.-.
T Consensus       870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~-i~~--~cakmlrRv  940 (1692)
T KOG1020|consen  870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSK-IVD--MCAKMLRRV  940 (1692)
T ss_pred             HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhh-HHH--HHHHHHHHh
Confidence            89999999999998877655443     455677777777 788999999999999986554221 111  122222222


Q ss_pred             hcCChhHHHHHHHHHHHHhc
Q 009665          378 LNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       378 ~~~~~~v~~~a~~aL~nl~~  397 (529)
                      .+.+..+++-++.++.++-.
T Consensus       941 ~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  941 NDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             ccchhHHHHHHHHHHHHHhc
Confidence            33333466667666666643

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.28  E-value=2.6  Score=40.80  Aligned_cols=157  Identities=18%  Similarity=0.161  Sum_probs=109.9

Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHhhc-CChhhHHHHHhc-C-ChHHHHHHhccCC----c--------hhHHHHHHHH
Q 009665          285 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY----K--------KSIKKEACWT  349 (529)
Q Consensus       285 ~~~L~~lL~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~----~--------~~v~~~a~~~  349 (529)
                      ++.+...|......+..++++.|..++. ........++.. + -.+.+..++....    .        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6778888988888889999999999999 554555555532 1 1334555553221    1        2788877765


Q ss_pred             HHHHh-cCCHHHHHHHH-HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC---HHHHHHHHHcCChHHHHhccCCCC
Q 009665          350 ISNIT-AGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS---NEQIKFLVSQGCIKPLCDLLNCPD  424 (529)
Q Consensus       350 L~nl~-~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~l~~L~~lL~~~~  424 (529)
                      +..+. .+++.....++ +.+.+..+..-|..+++++....+.+|..-.....   ....-.+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            55544 46777777777 46678889999988888999999999986443221   233334455567888999888777


Q ss_pred             H----HHHHHHHHHHHHHHHh
Q 009665          425 P----RIVTVCLEGLENILKA  441 (529)
Q Consensus       425 ~----~v~~~~l~aL~~l~~~  441 (529)
                      +    .+...+-+.|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    7888888888887743

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.25  E-value=1.3  Score=41.08  Aligned_cols=218  Identities=15%  Similarity=0.163  Sum_probs=126.6

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009665          119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVL  196 (529)
Q Consensus       119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~  196 (529)
                      |=..|.+++ +.+|..|+.+|..+...-+...   ....-+..|+.++.+  .+......++.++..+.....-....  
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--   77 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--   77 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence            446677887 8999999999999887444221   222335666665544  45555666677777776433211111  


Q ss_pred             hcCChHHHHHHhc-cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc-CChHHHHHHHHHHHHhccCCch
Q 009665          197 SNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTND  274 (529)
Q Consensus       197 ~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~~~~~  274 (529)
                      ...++..+.+... +......+..+...+..+...............+..+++.+.. .||.-...+...+..+...-+-
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            1112233333221 1223455667777777776654222222335666777777764 4888888888777777644331


Q ss_pred             hHHHHHHhCcHHHHHHhcC--------C-C-Cc--chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhH
Q 009665          275 KIQAVIEAGVCPRLVELLR--------H-P-SP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI  342 (529)
Q Consensus       275 ~~~~~~~~~~~~~L~~lL~--------~-~-~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  342 (529)
                        .     ...+-+.+.+.        . + ++  -.+..--..|.+....++...     .-.+|.|+.-|.++ .+.+
T Consensus       158 --~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~  224 (262)
T PF14500_consen  158 --S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV  224 (262)
T ss_pred             --c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence              1     22333333332        1 1 11  233334445555555455333     35789999999998 8889


Q ss_pred             HHHHHHHHHHHhc
Q 009665          343 KKEACWTISNITA  355 (529)
Q Consensus       343 ~~~a~~~L~nl~~  355 (529)
                      |..++.+|..++.
T Consensus       225 K~D~L~tL~~c~~  237 (262)
T PF14500_consen  225 KLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998876

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.18  E-value=1.1  Score=43.76  Aligned_cols=275  Identities=19%  Similarity=0.173  Sum_probs=137.0

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCCchhHH
Q 009665          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWAL-GNVAGDSPKCRD  193 (529)
Q Consensus       116 i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~~~  193 (529)
                      +..+++-+.+.....+|..++--|+.-+. +++.+..+..+|.+..+++.+.. ++..+...+..++ .-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            44556666644446788888888888887 89999999999999999999955 4442444444444 44444443 334


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc---------cCChHHHHHHHHH
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWA  264 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~---------~~d~~v~~~a~~~  264 (529)
                      .+........++.++.-...........      .... .............+...+.         .....-+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~-~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRK-KNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hhhh-hhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            4444455555566663000000000000      0000 0000000111111111110         0111122333333


Q ss_pred             HHHhc--------------cCCchhHHHHHHhCcHHHHHHhcC----CC-------Cc-----chHHHHHHHHHHhhcCC
Q 009665          265 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLR----HP-------SP-----SVLIPALRTVGNIVTGD  314 (529)
Q Consensus       265 L~~l~--------------~~~~~~~~~~~~~~~~~~L~~lL~----~~-------~~-----~v~~~al~~L~~l~~~~  314 (529)
                      +-.++              ...+...+.+...|++..++.++.    ..       .+     .....++++|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            33331              111122334555678888888874    11       11     13456888888888776


Q ss_pred             hhhHHHHHhc--CChHHHHHHh-ccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-------h----
Q 009665          315 DMQTQCIINH--QALPCLLDLL-TQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-------L----  378 (529)
Q Consensus       315 ~~~~~~~~~~--~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-------~----  378 (529)
                      ......++..  +.++.+...+ ...  ....+...++.++.|++-.+|+.+..+...++...+..+.       .    
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            6555555532  3333333322 222  0344456788899999988877766655443322211111       1    


Q ss_pred             ---cCChhHHHHHHHHHHHHhcCC
Q 009665          379 ---NAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       379 ---~~~~~v~~~a~~aL~nl~~~~  399 (529)
                         ....+...-++.++.|++.+.
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             ccccccchHHHHHHHhHHHheeeC
Confidence               112345566677777776653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.17  E-value=0.39  Score=43.80  Aligned_cols=100  Identities=16%  Similarity=0.125  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009665          299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  378 (529)
Q Consensus       299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~  378 (529)
                      ....|++.|.-++--.+..+..+-....+..++.+|.....+.++..+..+|..+...++.+...+-..+++..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            45667888888887777777777788999999999965447889999999999999988999998889999999999999


Q ss_pred             cC--ChhHHHHHHHHHHHHhcC
Q 009665          379 NA--EFEIKKEAAWAISNATSG  398 (529)
Q Consensus       379 ~~--~~~v~~~a~~aL~nl~~~  398 (529)
                      +.  +.++|-.++..|.-....
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHcc
Confidence            86  667887777777766653

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.17  E-value=2.6  Score=39.22  Aligned_cols=203  Identities=13%  Similarity=0.102  Sum_probs=140.0

Q ss_pred             HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC---CCchhhh---hchHHHHHHhhccCChHHHHHHHHHHH
Q 009665          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQT---RPALPALERLIHSNDDEVLTDACWALS  266 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~---~~~l~~L~~ll~~~d~~v~~~a~~~L~  266 (529)
                      ..+...|.+..++..+ ...+-+.+..+..+..++.+..-   .+...+.   ..++..|+..-.. .+++...+-..+.
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            3456778888899888 77778888888888888877652   1222222   2344444444111 3556555555555


Q ss_pred             HhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCC----hHHHHHHhccCCchhH
Q 009665          267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA----LPCLLDLLTQNYKKSI  342 (529)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~v  342 (529)
                      ....+. .....+..+.-+.....++..++-++...|..+...+.+........++..+.    .+..-.++.++ +.-.
T Consensus       151 Ecirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            544443 34456777777888888888888889999999999888876665555554333    34466677777 8889


Q ss_pred             HHHHHHHHHHHhcC--CHH-HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          343 KKEACWTISNITAG--NVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       343 ~~~a~~~L~nl~~~--~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      +..+..+++.+..+  +.. ..+++-...-+..++.+|.++...+|-+|-....-+..+.
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            99999999998874  222 2333434456889999999999999999999888887654

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.14  E-value=2.9  Score=43.22  Aligned_cols=103  Identities=20%  Similarity=0.146  Sum_probs=73.9

Q ss_pred             hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009665          201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  280 (529)
Q Consensus       201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  280 (529)
                      +..+++-. .+.+..++..++..|..+.......+.....++...+..-+.+..+.|+..|+.+|+++-..+.+-     
T Consensus        87 f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-----  160 (892)
T KOG2025|consen   87 FYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-----  160 (892)
T ss_pred             HHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-----
Confidence            33333333 556788999999999988886555555566777778888888889999999999999997433221     


Q ss_pred             HhCcHHHHHHhcC-CCCcchHHHHHHHHHH
Q 009665          281 EAGVCPRLVELLR-HPSPSVLIPALRTVGN  309 (529)
Q Consensus       281 ~~~~~~~L~~lL~-~~~~~v~~~al~~L~~  309 (529)
                      +..+...+..++. +++++||..|+.+|.+
T Consensus       161 e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  161 ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            1145566777775 4788999998776644

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.05  E-value=0.19  Score=35.96  Aligned_cols=66  Identities=15%  Similarity=0.198  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 009665          300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA  367 (529)
Q Consensus       300 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  367 (529)
                      .+.|++++|++++ ++.....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+..+.+-+.
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence            5689999999988 4555555667899999999998765788999999999999876 5555444443

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=0.76  Score=47.19  Aligned_cols=190  Identities=14%  Similarity=0.073  Sum_probs=119.5

Q ss_pred             hHHHHHHhhccCChHHHHHHHHHHHHhcc--CCc---hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009665          242 ALPALERLIHSNDDEVLTDACWALSYLSD--GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  316 (529)
Q Consensus       242 ~l~~L~~ll~~~d~~v~~~a~~~L~~l~~--~~~---~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  316 (529)
                      .=|.|...|+..+..|+.+|+..+.++--  .++   +..+.+++ .-...+..+|.++-+.+|..|..-+..+.+..-.
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe  253 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE  253 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            34567778888999999999999988752  222   22333444 4467789999999999999998877777653222


Q ss_pred             hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (529)
Q Consensus       317 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (529)
                      ....-+-..++..+..-+......+||......|..++.. |. ...+++. ++|.|-..|.+....||.++...|..+-
T Consensus       254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~-sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PL-SHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-cc-chhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            1111111123333444343333668888888888888875 22 2233333 5677777788888899999888888774


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          397 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       397 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      ...    ...+..---++.++.-|..++..+....+..|.+.+
T Consensus       331 ~vr----a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  331 AVR----AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             hhh----hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            321    111122122556666677777777666666665554

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=4.1  Score=42.15  Aligned_cols=236  Identities=13%  Similarity=0.095  Sum_probs=137.2

Q ss_pred             hchHHHHH-HhhccCChHHHHHHHHHHHHhccCCc--hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-
Q 009665          240 RPALPALE-RLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-  315 (529)
Q Consensus       240 ~~~l~~L~-~ll~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-  315 (529)
                      .++++.+. ..+.-+...+....-..|+++.....  ...+.++-.=.=+.|..-|+-.+..|+..|+..+-++---.+ 
T Consensus       128 ~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dp  207 (1005)
T KOG1949|consen  128 NDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDP  207 (1005)
T ss_pred             hhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCC
Confidence            45555433 33333334455555555666553321  111111111122445556777899999999999888753222 


Q ss_pred             ----hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC----CHHHHHHHHhcC-ChhHHH
Q 009665          316 ----MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG----IIGPLVNLLLNA-EFEIKK  386 (529)
Q Consensus       316 ----~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~----~l~~L~~~l~~~-~~~v~~  386 (529)
                          +....+++ +-...+..+|.++ -+.||..|..-++.+...    ...++...    ++..+++-+..+ ..+||.
T Consensus       208 d~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~  281 (1005)
T KOG1949|consen  208 DLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRC  281 (1005)
T ss_pred             CccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheeh
Confidence                33444554 3467799999999 899999999888877652    22233222    333444444333 558888


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhch
Q 009665          387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG  466 (529)
Q Consensus       387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~  466 (529)
                      .....|.-++.+.  ..-..| + .+++.|-..|.+....|+.+..+.|..|=..-              +.+...-.-.
T Consensus       282 svf~gl~~~l~np--~sh~~l-e-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr--------------a~~f~~I~~~  343 (1005)
T KOG1949|consen  282 SVFKGLPMILDNP--LSHPLL-E-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR--------------AAKFWKICPM  343 (1005)
T ss_pred             hHhcCcHHHHcCc--cchhHH-H-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh--------------hhhhhccccH
Confidence            8888888887742  222222 1 24667777778888899988888777653221              1222222222


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCC
Q 009665          467 LEKIENLQSHDNTEIYEKAVKILETYWVEEDED  499 (529)
Q Consensus       467 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~  499 (529)
                      -..|..|..++-+--+..+.-|+.-||+...++
T Consensus       344 d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e  376 (1005)
T KOG1949|consen  344 DHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE  376 (1005)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH
Confidence            344555555555555677788888898876643

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.11  Score=47.88  Aligned_cols=142  Identities=12%  Similarity=0.202  Sum_probs=98.3

Q ss_pred             cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009665          284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  363 (529)
Q Consensus       284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  363 (529)
                      .+...+..|.+.++.....++..|..++....+.....++ .++-.+++-+++. ...|-+.||.+++.+...-...+..
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~  166 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ  166 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677788889999999999999998876654444443 4566677777777 7889999999999998753444433


Q ss_pred             HHHcCCHHHHHHHHhc---CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          364 IIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       364 l~~~~~l~~L~~~l~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      ..+    ..+..++..   ++.-|+..|-.+|..+..+..+.-        ++..|+..+...++.++..+.-++.+..
T Consensus       167 ~ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  167 ELD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HHH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            222    122233332   245689999999999998766543        4667777788888888777666555544

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.84  E-value=4.1  Score=39.41  Aligned_cols=160  Identities=18%  Similarity=0.186  Sum_probs=117.5

Q ss_pred             hHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-HHHHHHHHhcC-----C--------hhHHHHHHH
Q 009665          327 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA-GI-IGPLVNLLLNA-----E--------FEIKKEAAW  390 (529)
Q Consensus       327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-l~~L~~~l~~~-----~--------~~v~~~a~~  390 (529)
                      +..+...|... ...+...+...|..++. .+......+... ++ .+.+-.++...     .        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            78888999888 77888899999999998 666666666642 22 44555555321     1        289999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHc-CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHH
Q 009665          391 AISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  469 (529)
Q Consensus       391 aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~  469 (529)
                      .+..+...+++.....++.. +.+..+..-+..++++++..++.+|..-+-.+......       .-...|. ...+.+
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~-------~K~~~fn-~~~L~~  208 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS-------TKCKLFN-EWTLSQ  208 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh-------hhhhhcC-HHHHHH
Confidence            99999988888777776654 66888888888888899999999999655444332211       1144444 446888


Q ss_pred             HHHHhcCCCH----HHHHHHHHHHHhhCCC
Q 009665          470 IENLQSHDNT----EIYEKAVKILETYWVE  495 (529)
Q Consensus       470 l~~L~~~~~~----~v~~~a~~il~~~~~~  495 (529)
                      |..|-...++    .+.+.+...+..++..
T Consensus       209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  209 LASLYSRDGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             HHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence            8888887777    8999999999998863

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.84  E-value=0.16  Score=51.74  Aligned_cols=142  Identities=14%  Similarity=0.121  Sum_probs=101.1

Q ss_pred             cHHHHHHhcCC----CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCH
Q 009665          284 VCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNV  358 (529)
Q Consensus       284 ~~~~L~~lL~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~  358 (529)
                      +-|.+.+...+    .++.++..|.-+|..+..-+...+.     .-+|.++..+. ++ +|.+|..|+..++.++....
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p-~P~IR~NaVvglgD~~vcfN  966 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHP-IPRIRANAVVGLGDFLVCFN  966 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCC-Ccceeccceeeccccceehh
Confidence            33444444433    5778888888888887664444332     45788999887 56 99999999999998876422


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHH
Q 009665          359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  438 (529)
Q Consensus       359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l  438 (529)
                      ..+..     .-..|.+-|.+.+..||+.+..++.++...+-      +.-.|-+..+..+|.++|..+...|--.+..+
T Consensus       967 ~~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098         967 TTADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred             hhhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence            22211     34567777888899999999999999987642      12357788888999999988887776666665


Q ss_pred             HHhh
Q 009665          439 LKAG  442 (529)
Q Consensus       439 ~~~~  442 (529)
                      ...+
T Consensus      1036 a~Kd 1039 (1128)
T COG5098        1036 AKKD 1039 (1128)
T ss_pred             Hhcc
Confidence            5443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.66  E-value=6.9  Score=41.22  Aligned_cols=312  Identities=11%  Similarity=0.092  Sum_probs=157.5

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch-hH
Q 009665          117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CR  192 (529)
Q Consensus       117 ~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~~  192 (529)
                      ..++++|++.++..++..+++.+.-+..+-.-..+.+..  ......+.+++.. ...+.+...+.+++.+.....+ .+
T Consensus       529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~  608 (978)
T KOG1993|consen  529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA  608 (978)
T ss_pred             HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            456677777754667888888887777632222222221  2344455555554 4556677777777777643221 11


Q ss_pred             HHHHhcCChHHHHHHh----ccc-hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCC---hHHHHHHHHH
Q 009665          193 DLVLSNGALMPLLAQF----NEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTDACWA  264 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l----~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d---~~v~~~a~~~  264 (529)
                      ..      ...+++.+    ..+ ..+-++...+.+|.++...-.........-++|.+-....-+.   .-..++++..
T Consensus       609 P~------~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeL  682 (978)
T KOG1993|consen  609 PY------ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMEL  682 (978)
T ss_pred             HH------HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHH
Confidence            11      12222222    122 3444566666788888765433333333333343333332222   2245555554


Q ss_pred             HHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHHhccCCchhHH
Q 009665          265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIK  343 (529)
Q Consensus       265 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  343 (529)
                      ......+.......+.  +++|.++.++....+. ...++.++....- .+.... .-...|+...+..++.+- ..+-.
T Consensus       683 W~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dv-r~egl  757 (978)
T KOG1993|consen  683 WLTTLMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDV-RNEGL  757 (978)
T ss_pred             HHHHHhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHH
Confidence            4444444332222232  5667777776554332 2333444433222 122111 112336677777777654 44445


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHH---
Q 009665          344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLC---  417 (529)
Q Consensus       344 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~---  417 (529)
                      ...+.++..+...++ ........++++.+..-+-.  +.|.+-..-+.+++.++.. +++....+++. .-.+.++   
T Consensus       758 ~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~-n~~~~msvlqt~~~~d~~~~~l  835 (978)
T KOG1993|consen  758 QAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR-NPSLFMSVLQTKNTYDILIAML  835 (978)
T ss_pred             HHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc-ChHHHHHHHHhhhhHHHHHHHH
Confidence            555666666666544 45555667788888776543  3667778888888888776 33443333322 2122222   


Q ss_pred             -----hccC-CCCHHHHHHHHHHHHHHHHh
Q 009665          418 -----DLLN-CPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       418 -----~lL~-~~~~~v~~~~l~aL~~l~~~  441 (529)
                           .+.. -.+++-++.-+-|+..++..
T Consensus       836 i~~WI~~~~~I~~~k~rKl~~LalsSll~t  865 (978)
T KOG1993|consen  836 IGNWILLFDHINHPKDRKLNTLALSSLLRT  865 (978)
T ss_pred             HHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence                 1111 24556555555566666644

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.53  E-value=4.7  Score=47.53  Aligned_cols=265  Identities=9%  Similarity=0.089  Sum_probs=144.0

Q ss_pred             CCCHHHHHHHHHHHHHhhCC---CchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHH
Q 009665          168 SPTDDVREQAVWALGNVAGD---SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  244 (529)
Q Consensus       168 ~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~  244 (529)
                      +++..++..|+..|..++..   ..+....-....++.++..++....+.+++..++.++.++......    .+..+.+
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence            34567777777777777631   1111111223456788888887777889999999999988775421    2223444


Q ss_pred             HHHHhh----ccCChHHHHHHHHHHHHhccCCchhHHHHHH--h----CcHHHHHHhcCCC-CcchHHHHHHHHHHhhcC
Q 009665          245 ALERLI----HSNDDEVLTDACWALSYLSDGTNDKIQAVIE--A----GVCPRLVELLRHP-SPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       245 ~L~~ll----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~----~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~  313 (529)
                      .+..++    ...++.+...+..++..+....-   ..+..  .    .++..+..+.... +..+-..|+..|.+++..
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            444444    35567788888888777664311   11110  1    3444455554433 355666677777655210


Q ss_pred             C----h-----------------------hhH-----HHHHhcCChHHHHHH---hccCCchhHHHHHHHHHHHHhc--C
Q 009665          314 D----D-----------------------MQT-----QCIINHQALPCLLDL---LTQNYKKSIKKEACWTISNITA--G  356 (529)
Q Consensus       314 ~----~-----------------------~~~-----~~~~~~~~l~~L~~l---L~~~~~~~v~~~a~~~L~nl~~--~  356 (529)
                      -    -                       ...     ........+|.|..+   ..++ +.+||..|+.+|-.+..  |
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhh
Confidence            0    0                       000     000011234444433   4555 89999999999887775  1


Q ss_pred             ---CHHHHHHHHHcCCHHHHHHHHhcC------------------C-h----hHHHHHHHHHHHHhcCCCHHHHHHH--H
Q 009665          357 ---NVNQIQAIIEAGIIGPLVNLLLNA------------------E-F----EIKKEAAWAISNATSGGSNEQIKFL--V  408 (529)
Q Consensus       357 ---~~~~~~~l~~~~~l~~L~~~l~~~------------------~-~----~v~~~a~~aL~nl~~~~~~~~~~~l--~  408 (529)
                         +++....++. +++-.+++.+...                  + .    .+...+..+|.+++.--. .+...|  .
T Consensus      1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft-~fFd~L~~~ 1457 (1780)
T PLN03076       1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV-KFYPTVNPL 1457 (1780)
T ss_pred             ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence               4445555555 3555555555321                  0 0    122333333433332100 122221  1


Q ss_pred             HcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          409 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       409 ~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      -.+++..|..++..++..+......+|.+++..+
T Consensus      1458 L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1458 LKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            1345666777777788888888899999997654

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.38  E-value=1.8  Score=42.38  Aligned_cols=242  Identities=17%  Similarity=0.165  Sum_probs=124.6

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHh-hhhcCCCCCch
Q 009665          159 VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-NFCRGKPQPLF  236 (529)
Q Consensus       159 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~  236 (529)
                      +..++.-+.+ .+..+|..++--|+.-+.+ +.++..+..+|....+++.+....+..+...++.++. -++.+......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            4555555553 5578898888888888875 4589999999999999999955544434444444444 44444333333


Q ss_pred             hhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC---------CCCcchHHHHHHH
Q 009665          237 EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR---------HPSPSVLIPALRT  306 (529)
Q Consensus       237 ~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~---------~~~~~v~~~al~~  306 (529)
                      ......+..++.++... ..++.....      . ..........+ ..+..+...+.         +....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            33455566666666611 000000000      0 00000011111 11222222221         1233456667777


Q ss_pred             HHHhhcC--------------ChhhHHHHHhcCChHHHHHHhcc----CC------c-----hhHHHHHHHHHHHHhcCC
Q 009665          307 VGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY------K-----KSIKKEACWTISNITAGN  357 (529)
Q Consensus       307 L~~l~~~--------------~~~~~~~~~~~~~l~~L~~lL~~----~~------~-----~~v~~~a~~~L~nl~~~~  357 (529)
                      +-.++..              .+.....+...|+++.++.++..    ..      .     ...-..+..+|=|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            7777411              11223334456778888888752    10      1     112234566676777655


Q ss_pred             HHHHHHHHH--cCCHHHHHHH----HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009665          358 VNQIQAIIE--AGIIGPLVNL----LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ  410 (529)
Q Consensus       358 ~~~~~~l~~--~~~l~~L~~~----l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  410 (529)
                      .++..+++.  .+.++.+...    .......+...++..+.|++.+. +..+..+...
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~  311 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASP  311 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhh
Confidence            555555543  2333333332    22223445677888999998763 3444444433

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.37  E-value=4  Score=37.25  Aligned_cols=204  Identities=18%  Similarity=0.105  Sum_probs=114.5

Q ss_pred             HHHHH-hhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH
Q 009665          244 PALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII  322 (529)
Q Consensus       244 ~~L~~-ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  322 (529)
                      |.++. +-+..++......+.+|..++.+......     -++..+..+...+.......+.+.+..+-..++...    
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            44443 44567899999999999999977621212     334556666666666666677778877777655332    


Q ss_pred             hcCChHHHHHH-----h----ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-hcCChhHHHHHHHHH
Q 009665          323 NHQALPCLLDL-----L----TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAI  392 (529)
Q Consensus       323 ~~~~l~~L~~l-----L----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~aL  392 (529)
                        +.+..++..     .    ......+.....+..+..+|...|+..     ..+++.+..++ ...++.++..++.+|
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence              122222222     1    111134455555677888888766622     23677788888 677888899999999


Q ss_pred             HHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHH
Q 009665          393 SNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE  471 (529)
Q Consensus       393 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~  471 (529)
                      ..++...-.+...      ....+..-+.. ..|.+... +--+..++..+....        +.|....  ...+..+.
T Consensus       147 ~~Lc~~~vvd~~s------~w~vl~~~l~~~~rp~v~~~-l~~l~~l~~~~~~~~--------e~~~~~~--~~~l~~lW  209 (234)
T PF12530_consen  147 APLCEAEVVDFYS------AWKVLQKKLSLDYRPLVLKS-LCSLFALVPQGAVDS--------EEYEELK--RQILQLLW  209 (234)
T ss_pred             HHHHHHhhccHHH------HHHHHHHhcCCccchHHHHH-HHHHHHHhccccCCh--------hhhhHHH--HHHHHHHH
Confidence            9998532222222      23334443433 33444443 333333443333222        1233322  34577777


Q ss_pred             HHhcCCCHH
Q 009665          472 NLQSHDNTE  480 (529)
Q Consensus       472 ~L~~~~~~~  480 (529)
                      ++..+.+.+
T Consensus       210 ~~~~~~~~~  218 (234)
T PF12530_consen  210 EYTSSSDVN  218 (234)
T ss_pred             hhccccccc
Confidence            776666643

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.36  E-value=10  Score=43.16  Aligned_cols=73  Identities=11%  Similarity=0.132  Sum_probs=56.3

Q ss_pred             cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665          324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       324 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (529)
                      .+++|.|..-|.+. +..+|..|...++.+......+.. =-........+.-+.+.+++||.+++....++...
T Consensus       258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~  330 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN  330 (1266)
T ss_pred             HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence            37899999999888 899999999999999886333322 00123566666677778999999999999998876

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.27  E-value=5  Score=39.60  Aligned_cols=189  Identities=12%  Similarity=0.085  Sum_probs=112.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh--hhHHhhcCChHHHHHhhcCCC----ChH--HHHHHHHHHHHHhcC
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD----FPQ--LQFEAAWALTNIASG  145 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~~i~~g~i~~Li~lL~~~~----~~~--v~~~a~~~L~~l~~~  145 (529)
                      .++...+...+.+.|+.|+....++..+.+...  .+.+.+.-+.+.+-++|.+.+    .|+  .+.-++.+|..++. 
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-   92 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-   92 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence            345556667777889999999999887654322  344667777888888886543    233  35556667777776 


Q ss_pred             ChhhH--HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-cc--hh
Q 009665          146 TSENT--RVVIDHGAVPIFVRLLSS-PTD------DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EH--AK  213 (529)
Q Consensus       146 ~~~~~--~~~~~~g~i~~L~~lL~~-~~~------~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~-~~--~~  213 (529)
                      .|+..  ..++  +.||.|..+++. .++      .+.+.+-.+|..+++..+. ...++..|.++.+.++-. .+  .+
T Consensus        93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d  169 (698)
T KOG2611|consen   93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHD  169 (698)
T ss_pred             ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchh
Confidence            44432  2233  468999999876 233      3788899999999988664 566778899998886642 11  12


Q ss_pred             HHHHHHHHHHHhhhhcC-C-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009665          214 LSMLRNATWTLSNFCRG-K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (529)
Q Consensus       214 ~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~  269 (529)
                      ..+.   +..+.-+... . -.........++..+..-+...+.......|..|..+.
T Consensus       170 ~ala---l~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  170 MALA---LKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             HHHH---HHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            2221   1111111111 1 01111111223444444444556777788888887443

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.20  E-value=4.3  Score=37.01  Aligned_cols=202  Identities=19%  Similarity=0.174  Sum_probs=116.9

Q ss_pred             hHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 009665          116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  195 (529)
Q Consensus       116 i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  195 (529)
                      +|.|+.-+....++..+...+..|..++........     -++..|..+...+..+.+..+...+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            455555444444489999999999999984422222     234666667777777776777788887775554321   


Q ss_pred             HhcCChHHHHHHh---------ccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh-ccCChHHHHHHHHHH
Q 009665          196 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL  265 (529)
Q Consensus       196 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L  265 (529)
                         +.+..++..+         ..+...+.......++..+|...|.    ....+++.+..++ .+.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444431         1222445555666788888888765    4467788888888 788888999999999


Q ss_pred             HHhccCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHHhccC
Q 009665          266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQN  337 (529)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~  337 (529)
                      ..++...--...     .....+..-++.+ .+.+....+..++.+..+.- ..........++..+..+..+.
T Consensus       147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            999944211111     2223333444333 33344333333333332211 1111123445666666666655

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.16  E-value=4.5  Score=45.77  Aligned_cols=148  Identities=16%  Similarity=0.161  Sum_probs=93.4

Q ss_pred             CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009665          283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ  362 (529)
Q Consensus       283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  362 (529)
                      +++|.|-.-|.+++..+|..|...+|.+......+.. --....+...+.-+.+. +..||.+++....++...+++...
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7889898889999999999999999999885543322 00123445555556666 889999999999988887666443


Q ss_pred             HHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          363 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       363 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      ...   ....+....  .|++++.....++..+..   ......+... ++..+.+-+.+..+.|+..|...|..+.+.
T Consensus       337 ~~~---~~~~l~~~~--~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALRERD--LDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHHhhc--CChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            222   222222222  344444333222222211   0121222223 566667777788999999999999988874

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.05  E-value=0.48  Score=40.24  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009665          325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ  362 (529)
Q Consensus       325 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  362 (529)
                      .+++.|+.+|+.+.++.+|.++..++|.|.+-+|...+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k   47 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK   47 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence            46778888898877899999999999999986555443

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.04  E-value=0.57  Score=43.28  Aligned_cols=145  Identities=18%  Similarity=0.199  Sum_probs=102.5

Q ss_pred             chHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHH
Q 009665          241 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC  320 (529)
Q Consensus       241 ~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~  320 (529)
                      ..+...+..|.+.|.+...+.+..|..|+....+.....+. .++..++.-+.+....|...|+.+++.+.+.-......
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~  166 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ  166 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667788889999999999999998776554444443 56667777788888889999999999998865544433


Q ss_pred             HHhcCChHHHHH-HhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          321 IINHQALPCLLD-LLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       321 ~~~~~~l~~L~~-lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                           -++.++. ++...  .+.-|+..|-.+|..+..+-..+       .+++.|+..+.+..+.++..++.+..++..
T Consensus       167 -----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  167 -----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             -----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence                 2333333 33221  14557888888988887742222       267788888888889999998888877765


Q ss_pred             C
Q 009665          398 G  398 (529)
Q Consensus       398 ~  398 (529)
                      .
T Consensus       235 r  235 (334)
T KOG2933|consen  235 R  235 (334)
T ss_pred             e
Confidence            4

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=93.98  E-value=0.74  Score=45.92  Aligned_cols=260  Identities=13%  Similarity=0.140  Sum_probs=143.5

Q ss_pred             HHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C
Q 009665           91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-P  169 (529)
Q Consensus        91 a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~  169 (529)
                      .-..|..++......+.+..++..++..|+.++.+++ +.-|.....+|.++-......+..+. ..+...|.+++.. .
T Consensus       110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~  187 (409)
T PF01603_consen  110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETE  187 (409)
T ss_dssp             HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcc
Confidence            3444555554332222555677788999999999999 99999999999998875566665554 3445667777764 4


Q ss_pred             CHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHH
Q 009665          170 TDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER  248 (529)
Q Consensus       170 ~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~  248 (529)
                      ...-...++.+++.+..+-. ..++.-.. -....++.+.....-.........++..++..+|..    ...++..+++
T Consensus       188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk  262 (409)
T PF01603_consen  188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLK  262 (409)
T ss_dssp             --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHH
Confidence            44555667888888875421 12221100 011223333322222333445555666555543221    1233334444


Q ss_pred             hhccCChHHHHHHHHHHHHhccCCc-hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh---c
Q 009665          249 LIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---H  324 (529)
Q Consensus       249 ll~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~---~  324 (529)
                      .=-..+..-....+.-+..+...-+ .... -+...++..+..++.+++..|...|+..+.|     +.... ++.   .
T Consensus       263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~~  335 (409)
T PF01603_consen  263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNSR  335 (409)
T ss_dssp             HS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTHH
T ss_pred             hCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhChH
Confidence            3334455544555555555554332 2222 2223567788888899998898888876643     22222 222   1


Q ss_pred             CChHHHHHHhccC----CchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009665          325 QALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAI  364 (529)
Q Consensus       325 ~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l  364 (529)
                      .++|.+...|...    =+..++..|..++.-+..-++.....+
T Consensus       336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~  379 (409)
T PF01603_consen  336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC  379 (409)
T ss_dssp             HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            3566666666431    156799999999999988777755443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.80  E-value=1.5  Score=45.35  Aligned_cols=208  Identities=15%  Similarity=0.141  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009665          215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  294 (529)
Q Consensus       215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  294 (529)
                      .-+..-...|..+.-.-  +.......++|.|+..+.+  ....-..+-.+..++...+   +......+++.|..+++.
T Consensus       288 ~qKs~Flk~Ls~~ip~f--p~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~  360 (700)
T KOG2137|consen  288 SQKSSFLKGLSKLIPTF--PARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSA  360 (700)
T ss_pred             HHHHHHHHHHHHhhccC--CHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhcc
Confidence            33444444555555442  3334456788888877732  3333333444444544433   223344677888888774


Q ss_pred             C-CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 009665          295 P-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL  373 (529)
Q Consensus       295 ~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L  373 (529)
                      . ...+....+.-+.-|....+   ..-+...++|.|...+++. +..++..++..+..++..-+   -..+..-++|.+
T Consensus       361 ~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l  433 (700)
T KOG2137|consen  361 SDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRL  433 (700)
T ss_pred             CCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHh
Confidence            2 22222222222222222211   1223447889999999988 99999999999998876422   123455578888


Q ss_pred             HHHHh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          374 VNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       374 ~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      ..+.. ..+..++..++.|+..++...+  ....   -..+..+....+..|+.++..++.+..++.-.
T Consensus       434 ~~l~~~tt~~~vkvn~L~c~~~l~q~lD--~~~v---~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~  497 (700)
T KOG2137|consen  434 KNLAFKTTNLYVKVNVLPCLAGLIQRLD--KAAV---LDELLPILKCIKTRDPAIVMGFLRIYEALALI  497 (700)
T ss_pred             hcchhcccchHHHHHHHHHHHHHHHHHH--HHHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence            87733 3478899999999999984321  1111   12355666677788999988888887777543

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.73  E-value=1.2  Score=47.41  Aligned_cols=164  Identities=18%  Similarity=0.208  Sum_probs=91.6

Q ss_pred             hHHHHHHhhcc----CChHHHHHHHHHHHHhccCCchh---------HHHHHHhCcHHHHHHhcC----CCCcchHHHHH
Q 009665          242 ALPALERLIHS----NDDEVLTDACWALSYLSDGTNDK---------IQAVIEAGVCPRLVELLR----HPSPSVLIPAL  304 (529)
Q Consensus       242 ~l~~L~~ll~~----~d~~v~~~a~~~L~~l~~~~~~~---------~~~~~~~~~~~~L~~lL~----~~~~~v~~~al  304 (529)
                      .+..+..++..    .++.+...++-+++.+....-..         ....+...+++.+...+.    ..+..-+..++
T Consensus       432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L  511 (618)
T PF01347_consen  432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL  511 (618)
T ss_dssp             HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence            34444445542    45667777777777665321000         011112245555655554    45567788899


Q ss_pred             HHHHHhhcCChhhHHHHHhcCChHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--
Q 009665          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--  380 (529)
Q Consensus       305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--  380 (529)
                      ++|||+..  +         ..++.+...+...  .+..+|..|+|++..++...++.        +.+.++.++.+.  
T Consensus       512 kaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e  572 (618)
T PF01347_consen  512 KALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTE  572 (618)
T ss_dssp             HHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS
T ss_pred             HHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCC
Confidence            99999964  2         2455566655443  26789999999999998776654        345666776664  


Q ss_pred             ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHH
Q 009665          381 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGL  435 (529)
Q Consensus       381 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL  435 (529)
                      ++++|..|..+|...-  .+..         .+..+...+. .++.+|...+...|
T Consensus       573 ~~EvRiaA~~~lm~~~--P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  573 DPEVRIAAYLILMRCN--PSPS---------VLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             -HHHHHHHHHHHHHT-----HH---------HHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHhcC--CCHH---------HHHHHHHHHhhCchHHHHHHHHHhc
Confidence            7789999988877741  1222         2444555554 45566666555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.54  E-value=1.8  Score=37.39  Aligned_cols=143  Identities=14%  Similarity=0.169  Sum_probs=89.6

Q ss_pred             hHHHHHHHHHHhhcCChhh-----HHHHH-h-----cCChH-HHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009665          299 VLIPALRTVGNIVTGDDMQ-----TQCII-N-----HQALP-CLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  366 (529)
Q Consensus       299 v~~~al~~L~~l~~~~~~~-----~~~~~-~-----~~~l~-~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  366 (529)
                      +|..|+.+|..++...+..     -..++ +     .+.-+ .+--++.++ ++++|..|+.+++.+..++.......-+
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            6778888888888762211     01111 1     12333 344455666 9999999999999999875544332221


Q ss_pred             cC-------------------CHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009665          367 AG-------------------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  426 (529)
Q Consensus       367 ~~-------------------~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~  426 (529)
                      .+                   +-..|+..|..+ +..+....+.++..+......+..+.=.-..++..+..++.+.|++
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            11                   233455566654 6678888999999998765433322111112355566667789999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 009665          427 IVTVCLEGLENILKAG  442 (529)
Q Consensus       427 v~~~~l~aL~~l~~~~  442 (529)
                      ++..++.+++.++...
T Consensus       161 v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999887654

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.48  E-value=5.9  Score=38.82  Aligned_cols=147  Identities=14%  Similarity=0.075  Sum_probs=90.1

Q ss_pred             HHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc----c-CCchhHHHHHHHHHHH
Q 009665          279 VIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT----Q-NYKKSIKKEACWTISN  352 (529)
Q Consensus       279 ~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~-~~~~~v~~~a~~~L~n  352 (529)
                      +.+..-.+.+-.-+.. +...-+..|+..+..++.........++.    ..+-.++.    + ..++.-+..|+..++.
T Consensus       206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            4444545555555543 33566788899999998754444333322    23333443    1 2267778889999999


Q ss_pred             HhcCCHH------------HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009665          353 ITAGNVN------------QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  420 (529)
Q Consensus       353 l~~~~~~------------~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  420 (529)
                      ++.....            .+..+....++|.|. --.+..+-++..|++.+..+-..-+++....     +++.++.+|
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L  355 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL  355 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence            9873211            244555666778776 2223467799999999999988766554433     688999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 009665          421 NCPDPRIVTVCLEGL  435 (529)
Q Consensus       421 ~~~~~~v~~~~l~aL  435 (529)
                      .+++.-|...+..++
T Consensus       356 ~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  356 QSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TSS-HHHHHHHHHHH
T ss_pred             CCCCcchhhhhhhhC
Confidence            999988887776654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=93.47  E-value=4.1  Score=40.65  Aligned_cols=233  Identities=14%  Similarity=0.102  Sum_probs=129.7

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009665          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  232 (529)
                      .++...+..|+.++.++++.=|+....+|.++.+.-...|..+.. .+...+.+.+...........++..++.+..+..
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            344556788999999999999999999999987655545555433 3445566666445555666777888888887753


Q ss_pred             CCc-hhhhhchHHHHHHhhccCC-hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          233 QPL-FEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       233 ~~~-~~~~~~~l~~L~~ll~~~d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                      .+. .....-....++.+...+. .........++..+...++.....++     ..++..=-..+..-...-+.-+..+
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~el~~i  282 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNELEEI  282 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCchhHHHHHHHHHHH
Confidence            232 2333334455566665553 22344555555555554444333222     2223322223333344455666666


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHHhc----C-Ch
Q 009665          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA---GIIGPLVNLLLN----A-EF  382 (529)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~~l~~----~-~~  382 (529)
                      ....+...-.-+...++..+...+.++ ...|.+.|+..+.|      +....++..   .++|.+...+..    . +.
T Consensus       283 l~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~  355 (409)
T PF01603_consen  283 LEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN------EYFLSLISQNSRVILPIIFPALYRNSKNHWNQ  355 (409)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence            664332221222335677888888888 88888888765432      111222221   156666666543    2 66


Q ss_pred             hHHHHHHHHHHHHhcC
Q 009665          383 EIKKEAAWAISNATSG  398 (529)
Q Consensus       383 ~v~~~a~~aL~nl~~~  398 (529)
                      .|+..|..++.-+...
T Consensus       356 ~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  356 TVRNLAQNVLKILMEM  371 (409)
T ss_dssp             THHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7888888888777664

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.45  E-value=8.6  Score=37.90  Aligned_cols=266  Identities=11%  Similarity=0.051  Sum_probs=135.8

Q ss_pred             CHHHHHHHHHHHHHhhCCCchhHHHHHhcC---ChHHHHHHhc-cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHH
Q 009665          170 TDDVREQAVWALGNVAGDSPKCRDLVLSNG---ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA  245 (529)
Q Consensus       170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~---~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~  245 (529)
                      +.++..+|+.+++.+..+.. ....+-...   ++...+..+. .+.+..+....+|+|+.=-.............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            67899999999999875543 222211111   2344444442 334566777777877742222111111122223333


Q ss_pred             HHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc--CCh-hhH---
Q 009665          246 LERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT--GDD-MQT---  318 (529)
Q Consensus       246 L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~--~~~-~~~---  318 (529)
                      +..+-. -+...+....+.++.++....+.....-.. ..++.++..+-+....++..|..++..+..  +.. ...   
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~  216 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV  216 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            333322 346678888999999988765533221111 367788887777777777776555544432  111 111   


Q ss_pred             HHHHhcC---------ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 009665          319 QCIINHQ---------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEA  388 (529)
Q Consensus       319 ~~~~~~~---------~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a  388 (529)
                      ...++..         +.+.+..++.+. +...-.--+|...-+.-+++. .....++ ..+...-.++.++++.+|.+|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~n-~wL~v~e~cFn~~d~~~k~~A  294 (372)
T PF12231_consen  217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHLN-EWLKVPEKCFNSSDPQVKIQA  294 (372)
T ss_pred             HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhHh-HHHHHHHHHhcCCCHHHHHHH
Confidence            1112222         233366666663 223333334544433333221 1111222 245555567778899999999


Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHcCChHHHHhccCCC-CH----HHHHHHHHHHHHHHH
Q 009665          389 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCP-DP----RIVTVCLEGLENILK  440 (529)
Q Consensus       389 ~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~-~~----~v~~~~l~aL~~l~~  440 (529)
                      ..+-..++...  +.........- +..++...++.. ..    .+...++..+.+++-
T Consensus       295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            98888776522  11111111111 233444444432 22    567777777777763

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.34  E-value=3  Score=43.33  Aligned_cols=175  Identities=14%  Similarity=0.148  Sum_probs=107.7

Q ss_pred             hhhchHHHHHHhhccCC-hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009665          238 QTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  316 (529)
Q Consensus       238 ~~~~~l~~L~~ll~~~d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  316 (529)
                      +...++|.|...++..+ .++..-.+.-+.-|...-+   ..-+...+++.|...+.+.+..++..++..+..++..-+.
T Consensus       346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~  422 (700)
T KOG2137|consen  346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV  422 (700)
T ss_pred             hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH
Confidence            34566777777776432 2222222222222221111   1123347888888889999999999999999999875552


Q ss_pred             hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (529)
Q Consensus       317 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (529)
                         ..+..-++|.|..+.....+..++..++-+++-++.. -+ ...+++  .+..+.......++.+......+..++.
T Consensus       423 ---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-lD-~~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~  495 (700)
T KOG2137|consen  423 ---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-LD-KAAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALA  495 (700)
T ss_pred             ---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-HH-HHHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence               3456678898888765554788899999999888721 11 111222  4555666666778888888777777776


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhccCCCC
Q 009665          397 SGGSNEQIKFLVSQGCIKPLCDLLNCPD  424 (529)
Q Consensus       397 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~  424 (529)
                      ..... . ..++...+++.++-+...+.
T Consensus       496 ~~~~~-g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  496 LIIYS-G-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hhccc-c-eeeehhhhhhhhhhhhhccc
Confidence            54221 1 23344567777777665443

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.33  E-value=0.99  Score=45.39  Aligned_cols=115  Identities=15%  Similarity=0.154  Sum_probs=78.9

Q ss_pred             HHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHH
Q 009665          265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK  344 (529)
Q Consensus       265 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~  344 (529)
                      +.+....+++... +++ |++..++..+.+++..|+..++.+|+.++..-.+ ....+-.+++..|..-+-+. .+.||.
T Consensus        75 ~~Y~~~~dpeg~~-~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~  150 (885)
T COG5218          75 FEYDMPDDPEGEE-LVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRR  150 (885)
T ss_pred             HHhcCCCChhhhH-HHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHH
Confidence            3334444443322 443 7888888889999999999999999998864333 23344447777777777777 788999


Q ss_pred             HHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHH
Q 009665          345 EACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAW  390 (529)
Q Consensus       345 ~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~  390 (529)
                      +|+.+|+.+-.  ++++..       +...|..+++.+ +.+||..|..
T Consensus       151 eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         151 EAVKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             HHHHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence            99999998875  344432       344566666654 6688887654

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=93.30  E-value=3.7  Score=43.30  Aligned_cols=163  Identities=20%  Similarity=0.217  Sum_probs=94.9

Q ss_pred             chHHHHHHhhccC----ChHHHHHHHHHHHHhcc----CCchhHHHHHHhCcHHHHHHhcC----CCCcchHHHHHHHHH
Q 009665          241 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLR----HPSPSVLIPALRTVG  308 (529)
Q Consensus       241 ~~l~~L~~ll~~~----d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~~L~~lL~----~~~~~v~~~al~~L~  308 (529)
                      ..+..+..++.++    .+.+...++-+++.+..    ..+..-..++ ..+++.+...|.    ..+...+..++++||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            4455666666543    45677777777776653    2211101111 245555555543    345556778999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhH
Q 009665          309 NIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEI  384 (529)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v  384 (529)
                      |+....           .++.+...+.  ...+..+|..|+|+|..++...+..        +-+.++.++.+.  ++++
T Consensus       472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence            987622           2344444443  1225689999999999998654553        345566666653  7899


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHH
Q 009665          385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEG  434 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~a  434 (529)
                      |..|+.+|...-  .+...         +..+...+. .++.+|...+...
T Consensus       533 RiaA~~~lm~t~--P~~~~---------l~~ia~~l~~E~~~QV~sfv~S~  572 (574)
T smart00638      533 RMAAVLVLMETK--PSVAL---------LQRIAELLNKEPNLQVASFVYSH  572 (574)
T ss_pred             HHHHHHHHHhcC--CCHHH---------HHHHHHHHhhcCcHHHHHHhHHh
Confidence            999998887752  12222         334444444 4556666555443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.27  E-value=3.6  Score=36.00  Aligned_cols=147  Identities=18%  Similarity=0.168  Sum_probs=93.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      -++.+++...+++..++..|+..+..++..+=-.|.      ..+|.|+.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            367888888899999999999999998876522333      36899999999988 99999999999999886555444


Q ss_pred             HHHhCCChHHHHHhh---CCCCH-HH---HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch-------hHHHH
Q 009665          152 VVIDHGAVPIFVRLL---SSPTD-DV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSML  217 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL---~~~~~-~v---~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~  217 (529)
                      .-...| +..-..+-   ..... ..   ....+..+..+...+...|..+     +..+++.+....       ...-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence            333333 22222221   11111 11   4455666677776665555554     556666663221       33445


Q ss_pred             HHHHHHHhhhhcCC
Q 009665          218 RNATWTLSNFCRGK  231 (529)
Q Consensus       218 ~~a~~~L~~l~~~~  231 (529)
                      ....++..||+.-+
T Consensus       156 ~~~~Fla~nLA~l~  169 (187)
T PF12830_consen  156 DFLLFLAENLATLP  169 (187)
T ss_pred             HHHHHHHHHHhcCC
Confidence            55566666666553

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=93.21  E-value=7.1  Score=36.23  Aligned_cols=220  Identities=16%  Similarity=0.104  Sum_probs=126.0

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC--CCChHHHHHHHHHHHHHhcCC---hhhH
Q 009665           76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--DDFPQLQFEAAWALTNIASGT---SENT  150 (529)
Q Consensus        76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~--~~~~~v~~~a~~~L~~l~~~~---~~~~  150 (529)
                      +=..|.++|+..|..|+..|..++..-....    ....-+..|++++.+  .+ ......++..+..+....   ++..
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~~~~~~~   78 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKNFSPESA   78 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcCCChhhH
Confidence            3346789999999999999999987542111    112223444444322  22 334444466666666421   1111


Q ss_pred             HHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665          151 RVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVL--SNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  226 (529)
                      .     .++..+.+-..  +-....|..+...+..+....   +..+.  ..+++..++..+....||...-.++..+..
T Consensus        79 ~-----~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~  150 (262)
T PF14500_consen   79 V-----KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKV  150 (262)
T ss_pred             H-----HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            1     12233333222  234667888888888887543   22222  234677888888777799988888888888


Q ss_pred             hhcCCCCCchhhhhchHHHHHHhhc-----c-CCh-H-HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcc
Q 009665          227 FCRGKPQPLFEQTRPALPALERLIH-----S-NDD-E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS  298 (529)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~L~~ll~-----~-~d~-~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~  298 (529)
                      +....+.  ......+...+....-     . +|+ . .+.+.-.+|.......+.     ...-.+|.|++-|.++.+.
T Consensus       151 i~~~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~s~~~~  223 (262)
T PF14500_consen  151 ILQEFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLDSTSPS  223 (262)
T ss_pred             HHHhccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHcCCCcH
Confidence            7776542  2222333333332221     1 122 1 233444444443333222     2236789999999999999


Q ss_pred             hHHHHHHHHHHhhcCCh
Q 009665          299 VLIPALRTVGNIVTGDD  315 (529)
Q Consensus       299 v~~~al~~L~~l~~~~~  315 (529)
                      ++..++.+|..++...+
T Consensus       224 ~K~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  224 VKLDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHHHHHCC
Confidence            99999999988876443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.19  E-value=0.46  Score=35.89  Aligned_cols=84  Identities=13%  Similarity=0.178  Sum_probs=64.6

Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009665          285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  364 (529)
Q Consensus       285 ~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  364 (529)
                      +...+..+.++.+.+|..++..|..+....+  ....-..+++..+...|+++ ++-|--.|..+++.++...++.    
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~----   77 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE----   77 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence            4566777889999999999999999998766  11122346788888999998 9999999999999999865552    


Q ss_pred             HHcCCHHHHHHHHhc
Q 009665          365 IEAGIIGPLVNLLLN  379 (529)
Q Consensus       365 ~~~~~l~~L~~~l~~  379 (529)
                          +++.|++...+
T Consensus        78 ----vl~~L~~~y~~   88 (92)
T PF10363_consen   78 ----VLPILLDEYAD   88 (92)
T ss_pred             ----HHHHHHHHHhC
Confidence                45666665544

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=93.04  E-value=9.4  Score=38.36  Aligned_cols=265  Identities=10%  Similarity=0.083  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC----CchhhhhchHH
Q 009665          169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ----PLFEQTRPALP  244 (529)
Q Consensus       169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~l~  244 (529)
                      +++-+....++++..+-..-......++.. .+..+.....+..++..-.....+++.+.+....    ........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            566666666676666554433333333321 2222222222344777777777777777665322    22245677889


Q ss_pred             HHHHhhccCChHHHHHHHHHHHHhccCCc-hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh
Q 009665          245 ALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  323 (529)
Q Consensus       245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  323 (529)
                      .+..+|+.+=.+..-++...++.+.+... ....... ..+++.|+.-.-.....-.-...+.|..+....+...   ..
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y-~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---~~  196 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY-KQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---VA  196 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT-GGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---cc
Confidence            99999988878888888888888875443 1111000 0233333322111111222344556666655433322   22


Q ss_pred             cC----ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhc
Q 009665          324 HQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATS  397 (529)
Q Consensus       324 ~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~  397 (529)
                      .+    ++..+-+++.+. .  --..+...|..+...-+ +.....+.. ++..++.-|++. .++..+.-+..++.++.
T Consensus       197 ~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~~~  272 (435)
T PF03378_consen  197 NNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLFAI  272 (435)
T ss_dssp             -S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence            23    334444556554 2  22456777777766423 333333332 555555556543 66666666666666655


Q ss_pred             CCCHHHHHHHHH---cCChHHHHhcc------CCCCHHHHHHHHHHHHHHHHhh
Q 009665          398 GGSNEQIKFLVS---QGCIKPLCDLL------NCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       398 ~~~~~~~~~l~~---~~~l~~L~~lL------~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      ..+++.....++   .|+...+..-+      +-..+.=++.+.-++.+++..+
T Consensus       273 ~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es  326 (435)
T PF03378_consen  273 KYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES  326 (435)
T ss_dssp             HH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred             HcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence            444454444443   24333333311      1123333555666667766443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.98  E-value=1.6  Score=38.23  Aligned_cols=105  Identities=16%  Similarity=0.124  Sum_probs=73.0

Q ss_pred             cCCCCcchHHHHHHHHHHhhcCChhhHHHHHh----------------cCChHHHHHHhccC-----CchhHHHHHHHHH
Q 009665          292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN----------------HQALPCLLDLLTQN-----YKKSIKKEACWTI  350 (529)
Q Consensus       292 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~lL~~~-----~~~~v~~~a~~~L  350 (529)
                      +.+++......++..|+|++.... ....+++                ...+..|+..+..+     ....--...+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            344556677788889999987443 3333331                23466677766551     1234456788899


Q ss_pred             HHHhcCCHHHHHHHHHc--CC--HHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665          351 SNITAGNVNQIQAIIEA--GI--IGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       351 ~nl~~~~~~~~~~l~~~--~~--l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (529)
                      +|++.. ++.++.+++.  +.  +..|+..+++.+..-|.-++.+|.|++..
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd  133 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD  133 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence            999987 7888888753  34  77888888888777778899999999985

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.92  E-value=7.5  Score=41.12  Aligned_cols=164  Identities=12%  Similarity=0.050  Sum_probs=81.6

Q ss_pred             CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh-CcH-------HHHHHhcCCCCcchHHHHHH
Q 009665          234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVC-------PRLVELLRHPSPSVLIPALR  305 (529)
Q Consensus       234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~-------~~L~~lL~~~~~~v~~~al~  305 (529)
                      ......-.++|.++.+|..+..-|-.+|+.++-.+-...+..-..+... .+.       ..|+..++.+...--....+
T Consensus       491 l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmK  570 (960)
T KOG1992|consen  491 LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMK  570 (960)
T ss_pred             CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHH
Confidence            3344556789999999999999999999988887653322211112221 122       22223333332222222333


Q ss_pred             HHHHhhcCChhhHHHHHh---cCChHHHHHHhccCCchhHHHHHHHHHH---H-HhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009665          306 TVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYKKSIKKEACWTIS---N-ITAGNVNQIQAIIEAGIIGPLVNLLL  378 (529)
Q Consensus       306 ~L~~l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~~~~v~~~a~~~L~---n-l~~~~~~~~~~l~~~~~l~~L~~~l~  378 (529)
                      ++..+..-.+........   .++.+.+...-+.+.++..-......++   + .+..++..+..+. ..++|.+..++.
T Consensus       571 aImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e-~aL~p~fq~Il~  649 (960)
T KOG1992|consen  571 AIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLE-EALFPVFQTILS  649 (960)
T ss_pred             HHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHH-HHHHHHHHHHHH
Confidence            333333322222211111   1222333334455545544443333333   3 3334455444443 448888888888


Q ss_pred             cCChhHHHHHHHHHHHHhcC
Q 009665          379 NAEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       379 ~~~~~v~~~a~~aL~nl~~~  398 (529)
                      .+-.+.--.+...++-+...
T Consensus       650 eDI~EfiPYvfQlla~lve~  669 (960)
T KOG1992|consen  650 EDIQEFIPYVFQLLAVLVEH  669 (960)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            76556666666666666543

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.86  E-value=1.3  Score=38.80  Aligned_cols=123  Identities=15%  Similarity=0.105  Sum_probs=78.4

Q ss_pred             CChHHHHHHHHHHHHhccCCchhHHHHHH----------------hCcHHHHHHhcCC------CCcchHHHHHHHHHHh
Q 009665          253 NDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVGNI  310 (529)
Q Consensus       253 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~~~~L~~lL~~------~~~~v~~~al~~L~~l  310 (529)
                      ++......++..|+|++..+.... .+++                ...+..|+.++..      ....-......++.|+
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            344456667778888877654332 1221                2356666666644      2344566788899999


Q ss_pred             hcCChhhHHHHHhc--CC--hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHHhc
Q 009665          311 VTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN  379 (529)
Q Consensus       311 ~~~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~l~~L~~~l~~  379 (529)
                      +. .+..++.+++.  +.  +..|+.++.+. +..-|..++.+|.|+|-....+ ..++.   .+++|.|+--|..
T Consensus        86 S~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG  158 (192)
T PF04063_consen   86 SQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG  158 (192)
T ss_pred             cC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence            87 45566667643  33  67788888887 7777788899999999874444 33432   3566666655553

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.81  E-value=2.4  Score=45.30  Aligned_cols=195  Identities=18%  Similarity=0.216  Sum_probs=119.5

Q ss_pred             HHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChH--HHHHHhccchhH
Q 009665          138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM--PLLAQFNEHAKL  214 (529)
Q Consensus       138 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~--~l~~~l~~~~~~  214 (529)
                      +|.++...+++....+++.|++..+..++.. ...+++..++..++|++...+. ++.......+.  .+-.++.+..+.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence            6778888889999999999999999999987 6788999999999999865431 22221111121  333344344455


Q ss_pred             HHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC-
Q 009665          215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-  293 (529)
Q Consensus       215 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-  293 (529)
                      +....++..|+.+....+....   .+.           -+.+......++......   ........-+.+.+..++. 
T Consensus       573 ersY~~~siLa~ll~~~~~~~~---~~~-----------r~~~~~~l~e~i~~~~~~---~~~~~~~~~f~~~~~~il~~  635 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTE---CVF-----------RNSVNELLVEAISRWLTS---EIRVINDRSFFPRILRILRL  635 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCcc---ccc-----------hHHHHHHHHHHhhccCcc---ceeehhhhhcchhHHHHhcc
Confidence            7778888888887776432100   000           111222222222222211   1121222122221444443 


Q ss_pred             CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665          294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (529)
Q Consensus       294 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  350 (529)
                      +..+..+..|++++.+++..++.....+.+.++++.+...-.......++.++...+
T Consensus       636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            345678889999999999998888888888899888877765543444455544443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.62  E-value=5.7  Score=42.36  Aligned_cols=197  Identities=16%  Similarity=0.107  Sum_probs=109.3

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCch
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPK  190 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~  190 (529)
                      .+..+.+++....  ---..|++.|..+..........     .+..+..++.+    .+..++..|+.+++.+......
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            4556667776654  11233555555555422122222     34556666665    4677889999888888631110


Q ss_pred             ---------hHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC---Ch
Q 009665          191 ---------CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD  255 (529)
Q Consensus       191 ---------~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~---d~  255 (529)
                               ..........++.+...+.   ...+..-+..++.+|.|+-.          ...++.+...+...   ..
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence                     0111222345666777764   22345677788899998853          35778888887765   67


Q ss_pred             HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH
Q 009665          256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  333 (529)
Q Consensus       256 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  333 (529)
                      .++..|++++..++...++.+        .+.++.++.+  .+.++|..|+.+|-..   ++..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence            899999999998877655433        3566777655  3566888887666442   2211       235567777


Q ss_pred             hccCCchhHHHHH
Q 009665          334 LTQNYKKSIKKEA  346 (529)
Q Consensus       334 L~~~~~~~v~~~a  346 (529)
                      +..+.+.+|....
T Consensus       601 l~~E~~~QV~sfv  613 (618)
T PF01347_consen  601 LWNEPSNQVASFV  613 (618)
T ss_dssp             HTT-S-HHHHHHH
T ss_pred             HhhCchHHHHHHH
Confidence            7665456555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.47  E-value=4  Score=35.32  Aligned_cols=142  Identities=16%  Similarity=0.141  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhcC-Chh----hHHHHHh------CCCh-HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009665          131 LQFEAAWALTNIASG-TSE----NTRVVID------HGAV-PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN  198 (529)
Q Consensus       131 v~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i-~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  198 (529)
                      +|..|+.+|..++.. ++.    ....++-      .+.- +.+.-++.++++.+|..|+.++..+......+-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            577788888887774 211    1111221      1123 344445677899999999999999976543221111111


Q ss_pred             C-------------------ChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCch--hhhhchHHHHHHhhccCChHH
Q 009665          199 G-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLIHSNDDEV  257 (529)
Q Consensus       199 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~L~~ll~~~d~~v  257 (529)
                      .                   .-..|+..|....+..+...++.++..|....|....  .....++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   1223444554556778888999999999988755443  345666677777888999999


Q ss_pred             HHHHHHHHHHhccCC
Q 009665          258 LTDACWALSYLSDGT  272 (529)
Q Consensus       258 ~~~a~~~L~~l~~~~  272 (529)
                      +..++.+++.+....
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999998887543

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=92.43  E-value=19  Score=39.11  Aligned_cols=127  Identities=15%  Similarity=0.229  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009665          299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  378 (529)
Q Consensus       299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~  378 (529)
                      ++..+.-+|+++|-..+....     ..+|.+++-|.......+|...+.+++.+|.....    +++ ..+|.+-..|.
T Consensus       947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa----m~d-~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA----MTD-RYIPMIAASLC 1016 (1529)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH----HHH-HhhHHHHHHhc
Confidence            344455556666554443322     34566666665543555666666666666543111    222 36788888888


Q ss_pred             cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCC--hHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          379 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC--IKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       379 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~--l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      ++++-||+.+...|.++...+   ..+.   .|.  +..+..++ +.+++++.-+--.+..++...
T Consensus      1017 Dp~~iVRrqt~ilL~rLLq~~---~vKw---~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG---IVKW---NGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             CchHHHHHHHHHHHHHHHhhh---hhhc---chhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence            888899999999999998753   2221   122  33333333 467778877777777777654

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.19  E-value=18  Score=42.93  Aligned_cols=263  Identities=14%  Similarity=0.096  Sum_probs=138.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC--CCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009665           82 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  159 (529)
Q Consensus        82 s~~~~~~~~a~~~l~~lls~~--~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  159 (529)
                      +.+..+...|+..|+++...-  ..+....-.+..++..|..++....+.+++...+.|+.+|.....    .-+..| -
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence            446778888888888865421  011011112335677777777665558999999999999986322    223344 4


Q ss_pred             HHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCC----hHHHHHHhccchhHHHHHHHHHHHhhh--
Q 009665          160 PIFVRLLS----SPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGA----LMPLLAQFNEHAKLSMLRNATWTLSNF--  227 (529)
Q Consensus       160 ~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~----i~~l~~~l~~~~~~~~~~~a~~~L~~l--  227 (529)
                      +.++.++.    ..++.+...|..++..|+.+.-   ..+..  .+.    +..+..+.....+..+--.++..|+++  
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence            44555544    4678888999998888764421   11110  122    333333332222333333333333322  


Q ss_pred             --hcCC----------C-------------C------Cch---hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009665          228 --CRGK----------P-------------Q------PLF---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       228 --~~~~----------~-------------~------~~~---~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~  273 (529)
                        +.+.          .             .      ...   ...-.++..|..+..+.+++||..|+.+|..+.....
T Consensus      1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence              1110          0             0      000   1112233344455567789999999999988764322


Q ss_pred             -----hhHHHHHHhCcHHHHHHhcCCC-------------------C-------cchHHHHHHHHHHhhcCChhhHHHHH
Q 009665          274 -----DKIQAVIEAGVCPRLVELLRHP-------------------S-------PSVLIPALRTVGNIVTGDDMQTQCII  322 (529)
Q Consensus       274 -----~~~~~~~~~~~~~~L~~lL~~~-------------------~-------~~v~~~al~~L~~l~~~~~~~~~~~~  322 (529)
                           +.-..++. +++-+++..+++.                   +       ......|++.+..+....-.....++
T Consensus      1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076       1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred             ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 22233333 4555555444310                   0       01222344444444432222222222


Q ss_pred             hcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       323 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      + +++..|..++..+ +..+-+.++.+|.++..
T Consensus      1459 ~-~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1459 K-KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             H-HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            2 5566666666777 77888888888888776

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.14  E-value=0.51  Score=39.15  Aligned_cols=75  Identities=19%  Similarity=0.274  Sum_probs=59.9

Q ss_pred             ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009665          412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  490 (529)
Q Consensus       412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~  490 (529)
                      ++..|..-|.+.++.++..++..|..+++.+..           .|...+...+.++.|..+... .+++|+.+...+|.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-----------~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~  106 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-----------RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK  106 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-----------HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            455666667789999999999999999877643           367777778889999988766 88999999999999


Q ss_pred             hhCCCCC
Q 009665          491 TYWVEED  497 (529)
Q Consensus       491 ~~~~~~~  497 (529)
                      .+-....
T Consensus       107 ~W~~~f~  113 (144)
T cd03568         107 QWADEFK  113 (144)
T ss_pred             HHHHHhC
Confidence            8854433

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.11  E-value=14  Score=36.76  Aligned_cols=233  Identities=16%  Similarity=0.184  Sum_probs=134.2

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCChHHHHHHhcc------chhHHHHHHHHHHHhhhhcCC
Q 009665          161 IFVRLLSSPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFNE------HAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~i~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      .+..++...+.+-+-.++.....++...+   ..+..+++.-+.+-+-+++..      ..+.-.+..+...|..+|+..
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35566666777777778888888874432   234556666566656666632      223344556667788888887


Q ss_pred             CCCchhhhhchHHHHHHhhccC-ChH------HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcch-HHHH
Q 009665          232 PQPLFEQTRPALPALERLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV-LIPA  303 (529)
Q Consensus       232 ~~~~~~~~~~~l~~L~~ll~~~-d~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v-~~~a  303 (529)
                      .-.....+-.-+|.|...+... |++      +..++..+|..++..... ...++..|.++.+.+.-.-++... ...+
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            5555555667889998888733 333      788899999988887554 466888899999998754443322 3334


Q ss_pred             HHHHHHhhcCChhh---HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH--HHHHH----HcCCHHHHH
Q 009665          304 LRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ--IQAII----EAGIIGPLV  374 (529)
Q Consensus       304 l~~L~~l~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l~----~~~~l~~L~  374 (529)
                      +.++--.+.+.+..   ...+..  ++..+..=+... +...+-+.|..|+.+....+..  ...+-    ...+...+.
T Consensus       174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~  250 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVV  250 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHH
Confidence            44443333322211   111111  123333333333 5567889999999766532211  11111    111334455


Q ss_pred             HHHhcC-ChhHHHHHHHHHHHHhc
Q 009665          375 NLLLNA-EFEIKKEAAWAISNATS  397 (529)
Q Consensus       375 ~~l~~~-~~~v~~~a~~aL~nl~~  397 (529)
                      ++|.+. .+.-|.-|+....|+..
T Consensus       251 ~IL~~kv~p~qr~pAL~Laa~~~h  274 (698)
T KOG2611|consen  251 AILQNKVAPSQRLPALILAANMMH  274 (698)
T ss_pred             HHHhcccCchhcChHHHHHHHHHH
Confidence            666665 44555556666666553

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.04  E-value=1.1  Score=38.23  Aligned_cols=112  Identities=20%  Similarity=0.192  Sum_probs=78.7

Q ss_pred             CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHH--hcCChHHHHHHhccCCchhHHHHHHHHHHHHhc---CC
Q 009665          283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GN  357 (529)
Q Consensus       283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~  357 (529)
                      ..+.++..+|.++++.-+..++..+...+..++..  .+.  -...+..++.+|+.+..+.+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            56677889999999999999999999988865321  222  224677888888887677889999999998875   45


Q ss_pred             HHHHHHHHHc---CCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665          358 VNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       358 ~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (529)
                      ++..+.+...   ++++.++.+++.  ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            5555554432   245555555554  46677788888877764

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.99  E-value=6.7  Score=43.97  Aligned_cols=193  Identities=15%  Similarity=0.153  Sum_probs=89.9

Q ss_pred             CcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCChhhHHHHH----hcCChHHHHHHhccCCchhHHHHHHHHHH--HHhc
Q 009665          283 GVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII----NHQALPCLLDLLTQNYKKSIKKEACWTIS--NITA  355 (529)
Q Consensus       283 ~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~----~~~~l~~L~~lL~~~~~~~v~~~a~~~L~--nl~~  355 (529)
                      ++++.+..+... .+..+-..|+..++++...-..-....-    ....++.+..  ..+ ...+-.++.|.+.  +++.
T Consensus       928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~ 1004 (1610)
T KOG1848|consen  928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLAD 1004 (1610)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHH
Confidence            455555555533 4556666676666666542111011111    1233333333  222 4456677777642  3332


Q ss_pred             CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH----HHhccCCCCHHHHHHH
Q 009665          356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP----LCDLLNCPDPRIVTVC  431 (529)
Q Consensus       356 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~----L~~lL~~~~~~v~~~~  431 (529)
                      ...+. ..-+.+|.+..+.+++.+....+.. ++|+.+-.-      .+..|.+..-++.    =-+.++...++....+
T Consensus      1005 ~~~ds-r~eVRngAvqtlfri~~Shg~~l~~-~aW~s~~w~------vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 1005 LCEDS-RAEVRNGAVQTLFRIFNSHGSKLGT-NAWASCCWL------VIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred             Hhccc-hHHHhhhHHHHHHHHHhhhcccCCh-hHHHHHHHH------HHHHHhccccccchhhhcchhHhhhhhhhhhhh
Confidence            11111 1223455666666666655433333 222222110      0011111000000    0001123344566677


Q ss_pred             HHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665          432 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  493 (529)
Q Consensus       432 l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  493 (529)
                      +.+|..++...-+.-.     ..|.+....++.  ++.+..+..+.++++...|...+++..
T Consensus      1077 isgIaklf~e~fk~ll-----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKLLL-----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             HHHHHHHHHHHHHHHH-----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            7788877754322211     133445545443  667777888899999988888877654

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.85  E-value=2.6  Score=42.27  Aligned_cols=157  Identities=16%  Similarity=0.221  Sum_probs=110.2

Q ss_pred             hHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCCh----hHHHHHHHHHHHHhcCCCHH
Q 009665          327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF----EIKKEAAWAISNATSGGSNE  402 (529)
Q Consensus       327 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~----~v~~~a~~aL~nl~~~~~~~  402 (529)
                      ...++.++.++ +..-+.+|...+..+... +.....++....+..|..++.+++.    ++....+.+++.+..++...
T Consensus        85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   85 AKRIMEILTEG-NNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            35577788888 777888888889888876 7888899999999999999998743    56667777777776655200


Q ss_pred             HHHHHHHcCChHHHHhcc--CCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHH
Q 009665          403 QIKFLVSQGCIKPLCDLL--NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTE  480 (529)
Q Consensus       403 ~~~~l~~~~~l~~L~~lL--~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~  480 (529)
                      .  ..+...++.....+.  +..+..+...++..|..+...+..            ....+.+.--++.|.......|..
T Consensus       163 W--~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~------------~~~~v~eev~i~~li~hlq~~n~~  228 (713)
T KOG2999|consen  163 W--ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT------------LRQLVAEEVPIETLIRHLQVSNQR  228 (713)
T ss_pred             e--eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH------------HHHHHHhcCcHHHHHHHHHhcchH
Confidence            0  001122333333333  345566778888888888765542            255565666677777777778899


Q ss_pred             HHHHHHHHHHhhCCCCCCC
Q 009665          481 IYEKAVKILETYWVEEDED  499 (529)
Q Consensus       481 v~~~a~~il~~~~~~~~~~  499 (529)
                      ++..|..+++.+|-.-.++
T Consensus       229 i~~~aial~nal~~~a~~~  247 (713)
T KOG2999|consen  229 IQTCAIALLNALFRKAPDD  247 (713)
T ss_pred             HHHHHHHHHHHHHhhCChH
Confidence            9999999999999865543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.71  E-value=0.72  Score=34.86  Aligned_cols=73  Identities=14%  Similarity=0.190  Sum_probs=58.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      .+...+..|.++.+.+|-.++..|++++....   ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence            46778888999999999999999999997652   111123467788889999998 89999999999999985544

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.36  E-value=9.2  Score=38.55  Aligned_cols=164  Identities=12%  Similarity=0.074  Sum_probs=107.9

Q ss_pred             HHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCc----chHHHHHHHHHHhhcCChhhH
Q 009665          243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP----SVLIPALRTVGNIVTGDDMQT  318 (529)
Q Consensus       243 l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~----~v~~~al~~L~~l~~~~~~~~  318 (529)
                      ...+...+.+++...+..++..+..++... .....++....+..|..++.++..    .+...+++++..+....- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            345667777777777777888888877654 456678888888999999877653    455556666655544321 11


Q ss_pred             HHHHhcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          319 QCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       319 ~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                      ...+...++..+..+..- ..+..+-..|...|-++..+++...+.+.+.--+..|+..+...+..++..|...+..+..
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            111111222222232211 1145677788888888888877777777777789999999999999999998888888887


Q ss_pred             CCCHHHHHHHH
Q 009665          398 GGSNEQIKFLV  408 (529)
Q Consensus       398 ~~~~~~~~~l~  408 (529)
                      .+.++....+.
T Consensus       243 ~a~~~~R~~~~  253 (713)
T KOG2999|consen  243 KAPDDKRFEMA  253 (713)
T ss_pred             hCChHHHHHHH
Confidence            77655544443

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=91.34  E-value=15  Score=39.77  Aligned_cols=129  Identities=13%  Similarity=0.116  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh
Q 009665          171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI  250 (529)
Q Consensus       171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll  250 (529)
                      +.++.+++-+|+++|--.....+     ..+|.+++-|..+....++.+..-+++.+|...    .......+|.+...|
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence            46889999999999955443322     358899999988888888888888888887653    234467889999999


Q ss_pred             ccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009665          251 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (529)
Q Consensus       251 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~  312 (529)
                      .++++-|+..++-.|.+|....--.    .+..++-+++.-|-+.++.++..|=.+++.+..
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence            9999999999999999987643111    111233334444455666777777777776653

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.32  E-value=23  Score=37.78  Aligned_cols=399  Identities=12%  Similarity=0.133  Sum_probs=197.7

Q ss_pred             HHHHhhcC--CCHHHHHHHHHHHHHHhcCC---CCChhhHHhh--cCChH-HHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009665           75 AMVAGVWS--DDRNIQLDATTQFRKLLSIE---RSPPINEVIQ--SGVVP-RFIEFLSRDDFPQLQFEAAWALTNIASGT  146 (529)
Q Consensus        75 ~l~~~L~s--~~~~~~~~a~~~l~~lls~~---~~~~~~~~i~--~g~i~-~Li~lL~~~~~~~v~~~a~~~L~~l~~~~  146 (529)
                      .++..+.+  .|+.++..|+..+.+.+..+   ..+....+.+  ...+. .++.++-+.. ..+|..-..+|+-++..+
T Consensus        41 ~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~D  119 (960)
T KOG1992|consen   41 LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRD  119 (960)
T ss_pred             HHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccc
Confidence            44455543  36889999999999888732   0111112221  11222 3445555554 688998889999998754


Q ss_pred             -hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHH--HHh----c-CChHHHHHHhcc-------
Q 009665          147 -SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDL--VLS----N-GALMPLLAQFNE-------  210 (529)
Q Consensus       147 -~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~--~~~----~-~~i~~l~~~l~~-------  210 (529)
                       |+....     .+|-|+.-+++.+-.+-...+.+-..+.. ..+.+|..  ..+    . ..-.++..++..       
T Consensus       120 FP~kWpt-----Ll~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~  194 (960)
T KOG1992|consen  120 FPDKWPT-----LLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQR  194 (960)
T ss_pred             cchhhHH-----HHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Confidence             443333     35777777777666555555544444431 11111111  111    0 112244444421       


Q ss_pred             -chhHH-------HHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccC---------C----hHHHHHHHHHHHHh
Q 009665          211 -HAKLS-------MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN---------D----DEVLTDACWALSYL  268 (529)
Q Consensus       211 -~~~~~-------~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~---------d----~~v~~~a~~~L~~l  268 (529)
                       ..+..       +..-.+.....|+..+ |.--.......++...+++..+         +    .+++...|..+.-.
T Consensus       195 ~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY  274 (960)
T KOG1992|consen  195 HANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLY  274 (960)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHH
Confidence             11222       2222333444444443 3222233455566666666522         1    23566677777666


Q ss_pred             ccCCchhHHHHHHhCcHHHHHHhcCCCC-----cchHHHHHHHHHHhhcCCh--------h------------------h
Q 009665          269 SDGTNDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDD--------M------------------Q  317 (529)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~-----~~v~~~al~~L~~l~~~~~--------~------------------~  317 (529)
                      +...++..+.++. .++...-.+|.+..     +.....|+..|.+++....        .                  .
T Consensus       275 ~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e  353 (960)
T KOG1992|consen  275 ATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE  353 (960)
T ss_pred             HHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh
Confidence            6555554443333 34444445554422     2345567777777765311        1                  1


Q ss_pred             HHHHHhcCChHHHHHHhccCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-c--CChhHHHHHHHHHH
Q 009665          318 TQCIINHQALPCLLDLLTQNYKKSI-KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-N--AEFEIKKEAAWAIS  393 (529)
Q Consensus       318 ~~~~~~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~--~~~~v~~~a~~aL~  393 (529)
                      -..+.+.+-++.+-.-|... |.+. |+.||..+..++......+-.++.. .+..+++-.. +  .++.-+..|.+.+.
T Consensus       354 DeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~t  431 (960)
T KOG1992|consen  354 DEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVT  431 (960)
T ss_pred             hHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhH
Confidence            11223445566666666655 4444 5677788888887654444444432 2333433322 2  36666777888888


Q ss_pred             HHhcCCCHHHH-----------HHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHH
Q 009665          394 NATSGGSNEQI-----------KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID  462 (529)
Q Consensus       394 nl~~~~~~~~~-----------~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~  462 (529)
                      .++..+.....           .-+....+++.|.+-=-...|-++..   +|..++..-...           -...+.
T Consensus       432 alaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~---aIKy~~~FR~ql-----------~~~~lm  497 (960)
T KOG1992|consen  432 ALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKAD---AIKYIYTFRNQL-----------GKEHLM  497 (960)
T ss_pred             HHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhc---ccceeeeecccC-----------ChHHHH
Confidence            88765421110           01111112222211000122222222   222222221110           122222


Q ss_pred             hhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCC
Q 009665          463 DAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  498 (529)
Q Consensus       463 ~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~  498 (529)
                      .  .+..+.+....+..-|+..|...+++.+...++
T Consensus       498 ~--~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~  531 (960)
T KOG1992|consen  498 A--LLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN  531 (960)
T ss_pred             H--HHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence            2  366777777888889999999999999987655

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.32  E-value=12  Score=34.64  Aligned_cols=215  Identities=19%  Similarity=0.161  Sum_probs=121.0

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCCC--CCh-hhHH-----------hhcCChHHHHHhhcCCCChHHHHHHHHHHHHH
Q 009665           77 VAGVWSDDRNIQLDATTQFRKLLSIER--SPP-INEV-----------IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNI  142 (529)
Q Consensus        77 ~~~L~s~~~~~~~~a~~~l~~lls~~~--~~~-~~~~-----------i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l  142 (529)
                      +.+|.+..+..=..|+..+.++++.-+  ++. .+.+           .-.|+.+.+++-+.++.   ....++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            456667777666777777777765421  111 1111           11234444444455444   344555666666


Q ss_pred             hcC-------ChhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc
Q 009665          143 ASG-------TSENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH  211 (529)
Q Consensus       143 ~~~-------~~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~  211 (529)
                      +..       +++.+-.+.-.+.+|.++..+.+++    ......++..|+.+|....        ...+..++....+.
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            542       1222322222356788888787765    2344556677888873321        12344444444322


Q ss_pred             ---hhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHH
Q 009665          212 ---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  288 (529)
Q Consensus       212 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L  288 (529)
                         ...+....++..|..-..  |.    ....++..|..+|.+.-+.++..++..|..+...-+-...  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence               234444555544443221  11    2245667788999888899999999999998866443322  455788889


Q ss_pred             HHhcCCCCcchHHHHHHHHHHhhcC
Q 009665          289 VELLRHPSPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       289 ~~lL~~~~~~v~~~al~~L~~l~~~  313 (529)
                      .+++..+.   -..|+.+|-.+...
T Consensus       234 lrlL~t~~---~~eAL~VLd~~v~~  255 (262)
T PF14225_consen  234 LRLLQTDL---WMEALEVLDEIVTR  255 (262)
T ss_pred             HHHhCCcc---HHHHHHHHHHHHhh
Confidence            99987654   55677777666543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.26  E-value=2  Score=37.52  Aligned_cols=83  Identities=12%  Similarity=0.142  Sum_probs=61.1

Q ss_pred             cCCchhHHHHHHhCcHHHHHHhcCC---------CCcchHHHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHHhccCCc
Q 009665          270 DGTNDKIQAVIEAGVCPRLVELLRH---------PSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYK  339 (529)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~L~~lL~~---------~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~  339 (529)
                      ..+...++.+++.|++..|+.+|..         .+......+++|+-.+..... ....++ ..+++..|...|.++ +
T Consensus        94 t~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~-~  171 (187)
T PF06371_consen   94 TNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSP-N  171 (187)
T ss_dssp             HS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TT-S
T ss_pred             cCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCC-C
Confidence            3445677888888999999988743         233567789999988887544 444455 578899999999988 8


Q ss_pred             hhHHHHHHHHHHHHh
Q 009665          340 KSIKKEACWTISNIT  354 (529)
Q Consensus       340 ~~v~~~a~~~L~nl~  354 (529)
                      ..+|..++.+|+.+|
T Consensus       172 ~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  172 IKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.61  E-value=3.9  Score=36.02  Aligned_cols=108  Identities=12%  Similarity=0.231  Sum_probs=71.0

Q ss_pred             CCHHHHHH-HHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC---CC-ChHHHHHHHHHHHHHhcCC-hhhHHHHHhC
Q 009665           83 DDRNIQLD-ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR---DD-FPQLQFEAAWALTNIASGT-SENTRVVIDH  156 (529)
Q Consensus        83 ~~~~~~~~-a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~---~~-~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~  156 (529)
                      +...-+.. |+..|..++| . .+....+++..+--.+..+|..   .. .+-+|..++.+++.+...+ ++....+...
T Consensus       111 ~~~snRvcnaL~lLQclaS-h-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT  188 (315)
T COG5209         111 ERESNRVCNALNLLQCLAS-H-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT  188 (315)
T ss_pred             chhhhHHHHHHHHHHHHhc-C-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence            33444444 4444444443 2 3333444454433233344432   21 2568999999999998854 5556677788


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009665          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (529)
Q Consensus       157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (529)
                      .++|.+++.+...++--+..++.+++.+..++....
T Consensus       189 eivPLcLrIme~gSElSktvaifI~qkil~dDvGLq  224 (315)
T COG5209         189 EIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQ  224 (315)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence            999999999999888888999999999988776543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.50  E-value=42  Score=39.48  Aligned_cols=273  Identities=13%  Similarity=0.126  Sum_probs=139.8

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchh
Q 009665          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE  237 (529)
Q Consensus       159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~  237 (529)
                      +..++..+..+++..+-.+..+++.++..-+.- .  .-......++..+....++-.+.....++..+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~--f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-P--FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-c--hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            344445555577777777777777777433211 0  111234556666645555555555556666666554 334444


Q ss_pred             hhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc----
Q 009665          238 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----  312 (529)
Q Consensus       238 ~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~----  312 (529)
                      .....+..+..+..+. +|.|+..++.++..+.+.........+. -.+..+..+|.+..+ .......+.+....    
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCc-chhhhhhhhccccccchh
Confidence            5556667777777655 5699999999999998765444333333 233344444433211 22222222222222    


Q ss_pred             -------------CChh-hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009665          313 -------------GDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  378 (529)
Q Consensus       313 -------------~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~  378 (529)
                                   ++.. .....+..-.+-...-++.++ ++-++.++..++-++-.-.+.+..   -.-+|+.++.++.
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence                         2211 011111112223333344555 788888898888877653333211   1125666777666


Q ss_pred             cCChhHHHHHHHHHHHHhcCCCHHHH---HHHH---------------HcCChHHHHhccC-CCCHHHHHHHHHHHHHHH
Q 009665          379 NAEFEIKKEAAWAISNATSGGSNEQI---KFLV---------------SQGCIKPLCDLLN-CPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       379 ~~~~~v~~~a~~aL~nl~~~~~~~~~---~~l~---------------~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~  439 (529)
                      +...-.|.....++..+......+..   ..+.               +.|.=-.+..++. ..|......++..+.+++
T Consensus      1109 s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred             chhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            65444555555555444432211111   1111               2333334444554 355667777777777754


Q ss_pred             H
Q 009665          440 K  440 (529)
Q Consensus       440 ~  440 (529)
                      .
T Consensus      1189 ~ 1189 (2067)
T KOG1822|consen 1189 N 1189 (2067)
T ss_pred             H
Confidence            3

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=90.11  E-value=8.7  Score=41.03  Aligned_cols=316  Identities=16%  Similarity=0.132  Sum_probs=156.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH------hC
Q 009665           83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI------DH  156 (529)
Q Consensus        83 ~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~  156 (529)
                      +|..+...++..+..++.  +......+++.|+|..|+..   +.-...-.-...||+.|.. .......+.      -+
T Consensus       365 ~d~~l~~~~~k~~~~l~~--h~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~  438 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAA--HRKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH  438 (1516)
T ss_pred             ccccccHHHHHHHHHHHH--hhHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence            445566677777777664  34667778888887766654   2212333444457777765 222222221      12


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc------------------chhHHHHH
Q 009665          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE------------------HAKLSMLR  218 (529)
Q Consensus       157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~------------------~~~~~~~~  218 (529)
                      .++..-+.+|.-....-+.++...++..... ...-+.+-.+..+..|+.++..                  ..+.....
T Consensus       439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~  517 (1516)
T KOG1832|consen  439 QVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF  517 (1516)
T ss_pred             HHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence            3445555666544333333333332221111 1122333344566666666631                  11223334


Q ss_pred             HHHHHHhhhhcCC-----CC-CchhhhhchHHHHHHhhccC------ChHHHHHHHHHHHHhccCCc-------hhHHHH
Q 009665          219 NATWTLSNFCRGK-----PQ-PLFEQTRPALPALERLIHSN------DDEVLTDACWALSYLSDGTN-------DKIQAV  279 (529)
Q Consensus       219 ~a~~~L~~l~~~~-----~~-~~~~~~~~~l~~L~~ll~~~------d~~v~~~a~~~L~~l~~~~~-------~~~~~~  279 (529)
                      ..|.+|....+..     .. .......+..+..++-+...      ..+..+.++|-+-.+.....       ...+.+
T Consensus       518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf  597 (1516)
T KOG1832|consen  518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF  597 (1516)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence            4455544322211     00 00000011112222212111      12233444554444332222       223456


Q ss_pred             HHhCcHHHHHHhcCCC-C-------cchHHHHHHHHHHhhcCChhhHHHHH------h--cCChHHHHHHhccC---Cch
Q 009665          280 IEAGVCPRLVELLRHP-S-------PSVLIPALRTVGNIVTGDDMQTQCII------N--HQALPCLLDLLTQN---YKK  340 (529)
Q Consensus       280 ~~~~~~~~L~~lL~~~-~-------~~v~~~al~~L~~l~~~~~~~~~~~~------~--~~~l~~L~~lL~~~---~~~  340 (529)
                      .+.+++..++++...+ +       ......|+.+|.-+..-.+-+. .+.      +  ..++..|+..-...   .++
T Consensus       598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~-~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp  676 (1516)
T KOG1832|consen  598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQK-ALAHATLSNNRAYDGIAIILDAANGSNSIVDP  676 (1516)
T ss_pred             HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHH-HHHHHHhhcccccCceEEEeecccccccccCH
Confidence            6778888888876432 2       2345566666665554333332 222      1  12344444433221   278


Q ss_pred             hHHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCCHHHHHHHHhcCC----
Q 009665          341 SIKKEACWTISNITAGNVNQI-----------------------------------QAIIEAGIIGPLVNLLLNAE----  381 (529)
Q Consensus       341 ~v~~~a~~~L~nl~~~~~~~~-----------------------------------~~l~~~~~l~~L~~~l~~~~----  381 (529)
                      ++++.|+.+|-|+..+.|+..                                   ..+...++|..|+.+|+...    
T Consensus       677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~  756 (1516)
T KOG1832|consen  677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT  756 (1516)
T ss_pred             HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence            899999999998876532211                                   12234678999999998753    


Q ss_pred             -hhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 009665          382 -FEIKKEAAWAISNATSGGSNEQIKFLV  408 (529)
Q Consensus       382 -~~v~~~a~~aL~nl~~~~~~~~~~~l~  408 (529)
                       ..+|..||.+|.-++...  ...+.|.
T Consensus       757 aD~IRalAc~~L~GLaR~~--tVrQIlt  782 (1516)
T KOG1832|consen  757 ADCIRALACRVLLGLARDD--TVRQILT  782 (1516)
T ss_pred             HHHHHHHHHHHHhccccCc--HHHHHHH
Confidence             258999999999999854  4444443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.10  E-value=29  Score=36.93  Aligned_cols=318  Identities=16%  Similarity=0.099  Sum_probs=163.6

Q ss_pred             HhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCC
Q 009665          110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDS  188 (529)
Q Consensus       110 ~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~  188 (529)
                      .....++|.+-  ...++..-+|+..+|.++.-.+  .+...... .-+-..++.+++.. +.-++-.++.++.-...|-
T Consensus       484 Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvs--vq~~~e~k-~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~  558 (978)
T KOG1993|consen  484 WLQEALLPELA--NDHGNSRIIRRRVAWILGQWVS--VQQKLELK-PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW  558 (978)
T ss_pred             HHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhh--eechHhHH-HHHHHHHHHhcCccccceeehHHHHHHHHhhhhc
Confidence            33444555554  2233324679999999999876  12221111 11236778888885 6777888888888776443


Q ss_pred             chhHHHHHh--cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhh---hchHHHHHHhhccCChHHHHHHHH
Q 009665          189 PKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT---RPALPALERLIHSNDDEVLTDACW  263 (529)
Q Consensus       189 ~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~l~~L~~ll~~~d~~v~~~a~~  263 (529)
                      .-..+.+..  .+....+..++..-+..+.+..++.+++.+...-........   ...+|.|-+-- .+.+-++...+.
T Consensus       559 nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~  637 (978)
T KOG1993|consen  559 NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLA  637 (978)
T ss_pred             cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHH
Confidence            211222211  223444555554445566677777777776654311111111   22222222211 345667788888


Q ss_pred             HHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-Ccc---hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCc
Q 009665          264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK  339 (529)
Q Consensus       264 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~---v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  339 (529)
                      ++.++...-......+  ..++-.++++-.++ +++   ..+-+....+............++  +++|.+...+... .
T Consensus       638 ~L~~lV~alg~qS~~~--~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-t  712 (978)
T KOG1993|consen  638 TLRNLVNALGAQSFEF--YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-T  712 (978)
T ss_pred             HHHHHHHHhccCCccc--hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-h
Confidence            8888875422211111  12333444444332 222   233343333333333333333332  4678888888655 3


Q ss_pred             hhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009665          340 KSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  418 (529)
Q Consensus       340 ~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  418 (529)
                      . .-..+..++....- .++... .-...|++..+.+++.+-..+-....+..+..+...  ......+...++++.+..
T Consensus       713 e-~L~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t--~~il~~~~~~~~L~~lf~  788 (978)
T KOG1993|consen  713 E-NLPTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT--NPILGSLLFSPLLSRLFL  788 (978)
T ss_pred             h-hHHHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--hHHHHhhhcchhhHHHHH
Confidence            3 33344444443332 333321 222346788888888765555556666666666653  234454555667766655


Q ss_pred             cc--CCCCHHHHHHHHHHHHHHHHhh
Q 009665          419 LL--NCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       419 lL--~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      -+  +.+.|.+....+.++..+.-.+
T Consensus       789 ~I~~~~~yP~~~~~yl~vvaRi~l~n  814 (978)
T KOG1993|consen  789 SIAENDKYPYVMGEYLLVVARISLRN  814 (978)
T ss_pred             HHHhCCCCchhHHHHHHHHHHHHhcC
Confidence            43  3455666666666666665433

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=89.83  E-value=12  Score=39.45  Aligned_cols=159  Identities=18%  Similarity=0.196  Sum_probs=92.2

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhcc---chhHHHHHHHHHHHhh
Q 009665          158 AVPIFVRLLSS----PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSN  226 (529)
Q Consensus       158 ~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~  226 (529)
                      .+..+..++.+    ....++..|+.+++++..    +.+.+. .......++.+...|..   ..+..-+..++.+|.|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            35666677765    456788888988888863    222111 11112345556655532   2244445566777777


Q ss_pred             hhcCCCCCchhhhhchHHHHHHhhc---cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHH
Q 009665          227 FCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLI  301 (529)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~L~~ll~---~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~  301 (529)
                      +-..          ..++.+...+.   .....++..|+++|..++...+...+        +.++.+..+  .++++|.
T Consensus       473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence            6543          34455555554   22567999999999998865544333        556666644  4567888


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHH
Q 009665          302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  345 (529)
Q Consensus       302 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  345 (529)
                      .|+..|-..   ++..       ..+..+...+..+.+.+|+..
T Consensus       535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sf  568 (574)
T smart00638      535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASF  568 (574)
T ss_pred             HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHH
Confidence            777666442   1211       235556666666545555443

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=89.47  E-value=4.4  Score=33.37  Aligned_cols=72  Identities=10%  Similarity=-0.001  Sum_probs=60.0

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK  440 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~~  440 (529)
                      .+..+..-+.++++.++..|+..|-.+..++...+...+...+++..|+.++..      .++.|+..++..+.....
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            455677778889999999999999999999888888888888899899999853      567899998888876654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.42  E-value=3.2  Score=34.46  Aligned_cols=71  Identities=11%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENIL  439 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~  439 (529)
                      .+..|..-+.++++.++..|+..|-.++.+++......+....++..|..++.. .++.|+..++..|....
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~  109 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA  109 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            455666777888999999999999999999998888888888999999999987 78889988888877654

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.40  E-value=8.6  Score=35.88  Aligned_cols=143  Identities=19%  Similarity=0.169  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--Ch
Q 009665          130 QLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--AL  201 (529)
Q Consensus       130 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~--~i  201 (529)
                      +-+.=++..++-++. ++.....+...+  +...+..++..    ..+..+-.++++++|+..... .+..+....  .+
T Consensus        78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence            446666666666665 444444443332  23444444322    568888999999999987655 455555432  23


Q ss_pred             HHHHHHhccch---hHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhhc--cCChHHHHHHHHHHHHhccCCch
Q 009665          202 MPLLAQFNEHA---KLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTND  274 (529)
Q Consensus       202 ~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll~--~~d~~v~~~a~~~L~~l~~~~~~  274 (529)
                      ...+..+....   +..++..++.++.|++...  ..........++..+.+.+.  ..|+++...++-+++++...++.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            33333332332   6778888888888887543  11122223345666666433  25899999999999999966543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=89.35  E-value=12  Score=36.43  Aligned_cols=103  Identities=14%  Similarity=0.018  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchh----HHHHHHHHHHHhhhhcCC--CCCchhhhhch
Q 009665          169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK----LSMLRNATWTLSNFCRGK--PQPLFEQTRPA  242 (529)
Q Consensus       169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~----~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~  242 (529)
                      ++..+...++.+|+|+...++..++..++......+++.+....+    ..+...-+..|.-+..-.  ..........+
T Consensus       109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G  188 (532)
T KOG4464|consen  109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG  188 (532)
T ss_pred             cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence            346788889999999999999999999998888888887643221    111111122222222211  11222333456


Q ss_pred             HHHHHHhhccC---------------ChHHHHHHHHHHHHhccC
Q 009665          243 LPALERLIHSN---------------DDEVLTDACWALSYLSDG  271 (529)
Q Consensus       243 l~~L~~ll~~~---------------d~~v~~~a~~~L~~l~~~  271 (529)
                      ++.+.+.+.+.               +......++.++.|++..
T Consensus       189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~  232 (532)
T KOG4464|consen  189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD  232 (532)
T ss_pred             cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence            66676666521               123456677777777754

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=89.26  E-value=22  Score=36.86  Aligned_cols=287  Identities=14%  Similarity=0.159  Sum_probs=146.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      ++..+=+.+.++++.+..-|+-.+.-.-++..++ +     ..++..|...+++++ ..++..|+.-|+-.-.++  +++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            3455555566666555544444433222221110 0     123445667777777 677877777776655532  333


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          152 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      .+.     ..|..++.+  ...++...|..+|+.+...+..  ..+ ...++..++..=.........+.....|..+-.
T Consensus       487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            332     145555655  3456777788888887644321  111 111233333332111223334444444444433


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC---cchHHHHHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRT  306 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~~~al~~  306 (529)
                      +..        ..+...+..+..-...++..+-..+...+-......-.+-+    ..+..+-....   ..-...|+--
T Consensus       559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg  626 (878)
T KOG2005|consen  559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG  626 (878)
T ss_pred             ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence            321        12222222222222333333222222222111111010000    12222222211   1223356666


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHH
Q 009665          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  386 (529)
Q Consensus       307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~  386 (529)
                      ++-++.+.+-..+.     .+..+-.+|..+ .+.+|+..-.+++-++..+|..       +++..|-....+.|.++.-
T Consensus       627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~  693 (878)
T KOG2005|consen  627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM  693 (878)
T ss_pred             hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence            66777766644432     345677778888 8899999999999998887763       3677788888888999999


Q ss_pred             HHHHHHHHHhcCCC
Q 009665          387 EAAWAISNATSGGS  400 (529)
Q Consensus       387 ~a~~aL~nl~~~~~  400 (529)
                      .++.+++-+-.+.+
T Consensus       694 naIfamGLiGAGTn  707 (878)
T KOG2005|consen  694 NAIFAMGLIGAGTN  707 (878)
T ss_pred             HHHHHhccccCCcc
Confidence            99998887766543

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=88.74  E-value=7.5  Score=41.49  Aligned_cols=157  Identities=16%  Similarity=0.200  Sum_probs=109.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .|..++..|.|.+..+...+-..+...+..++.+        -++..|+++.-+..+    ..|+.+|..+-.  |..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP--------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence            5778999999999999988888888887654222        135566665443331    335556665433  3222 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                           ..+..|-.++..  +.-|-.++..|+.+....+..-..+.+...+..|+++|..+.+..+...|+.+|..|.-..
T Consensus        70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 123555556654  4677889999999998777777888899999999999988889999999998888887665


Q ss_pred             CCCchhhhhchHHHHHHhh
Q 009665          232 PQPLFEQTRPALPALERLI  250 (529)
Q Consensus       232 ~~~~~~~~~~~l~~L~~ll  250 (529)
                      |......+..++.....++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            5444444555555555555

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=88.51  E-value=1.4  Score=36.58  Aligned_cols=74  Identities=12%  Similarity=0.080  Sum_probs=60.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  144 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~  144 (529)
                      +.+..+.+.|+++++.++..|+..|-.+..+-......++...+++..|+.++.....+.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999999988764344566777888999999999754448899999988888775

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=88.40  E-value=18  Score=36.40  Aligned_cols=262  Identities=10%  Similarity=0.065  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch-hHH--HHHhcCChHHH
Q 009665          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CRD--LVLSNGALMPL  204 (529)
Q Consensus       129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~~~--~~~~~~~i~~l  204 (529)
                      +.+....++++..+-.+.......++. .++..+....++ .++..-.....+++.+...... ..+  .-++...++.+
T Consensus        44 eylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f  122 (435)
T PF03378_consen   44 EYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF  122 (435)
T ss_dssp             HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence            556666666665555543333333332 123333334444 4566666666666666432111 111  12344567777


Q ss_pred             HHHhccchhHHHHHHHHHHHhhhhcCCC-CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh-
Q 009665          205 LAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-  282 (529)
Q Consensus       205 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-  282 (529)
                      ...| ...-.+..-++...++.|.+..+ .........++|.|+.-.--....-.-...+.|..+.......   +... 
T Consensus       123 ~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~---i~~~~  198 (435)
T PF03378_consen  123 QEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF---IVANN  198 (435)
T ss_dssp             HHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG-------S
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh---hcchh
Confidence            7777 44445666777777777766554 2222233444444432211111111122223333322222111   1211 


Q ss_pred             ---CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhh-HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CC
Q 009665          283 ---GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GN  357 (529)
Q Consensus       283 ---~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~  357 (529)
                         +++...-+++.+...  -..+...|..+...-+.. ....+. .++..++.-|++....+..+.-+..++.++. .+
T Consensus       199 ~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g  275 (435)
T PF03378_consen  199 QLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYG  275 (435)
T ss_dssp             -CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcC
Confidence               233333345555432  245777777777655432 111121 3555566666655466666666666665554 23


Q ss_pred             HHHHHHHHH---cCCHHHHHHH--H---hc-CChhHHHHHHHHHHHHhcC
Q 009665          358 VNQIQAIIE---AGIIGPLVNL--L---LN-AEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       358 ~~~~~~l~~---~~~l~~L~~~--l---~~-~~~~v~~~a~~aL~nl~~~  398 (529)
                      ++..-..++   .|++..++.-  +   .. ..+.-|+-++-+++++...
T Consensus       276 ~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  276 PDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            444444443   3444333331  1   11 1233456666666666543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=88.18  E-value=5.7  Score=32.49  Aligned_cols=73  Identities=8%  Similarity=0.002  Sum_probs=60.1

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC---CCHHHHHHHHHHHHHHHHh
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~---~~~~v~~~~l~aL~~l~~~  441 (529)
                      .+..|..-|.++++.++..|+..|-.++.+++..+...+.....+..|..++..   .++.|+..++..+......
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            456677778889999999999999999999887777777777788889998875   4778999988888877544

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=87.92  E-value=9.2  Score=30.59  Aligned_cols=94  Identities=14%  Similarity=0.196  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh-
Q 009665          386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-  464 (529)
Q Consensus       386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-  464 (529)
                      .....-|.+++.. ++..+..     +++.|..=|+..++.|+..+|.+|..++..+...           |...+.+. 
T Consensus        19 gy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~~~~   81 (122)
T cd03572          19 GYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQRNS   81 (122)
T ss_pred             hHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHHHhH
Confidence            3444455566554 3333333     5678888888888999999999999999877432           44444333 


Q ss_pred             chHHHHHHHhc--------CCCHHHHHHHHHHHHhhCCCC
Q 009665          465 EGLEKIENLQS--------HDNTEIYEKAVKILETYWVEE  496 (529)
Q Consensus       465 g~~~~l~~L~~--------~~~~~v~~~a~~il~~~~~~~  496 (529)
                      ..+..+.+...        ..+..|+..|..++.-.|+++
T Consensus        82 ~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          82 AQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence            23333444433        244679999999999999864

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.79  E-value=38  Score=35.34  Aligned_cols=300  Identities=12%  Similarity=0.093  Sum_probs=144.7

Q ss_pred             ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        71 ~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      ..++.+.+.|. +.|+..+..|-.+|+.+....           ..+..-.-++..++.|--+.-|..+|..+..+....
T Consensus         5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~sp-----------eclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~l   73 (1082)
T KOG1410|consen    5 AQLESLCKDLYESTDPTARHRAEKALAELSESP-----------ECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPL   73 (1082)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCH-----------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCC
Confidence            44566666665 789999999999999875321           123334445555555667778888888887744211


Q ss_pred             HHHHHhCCChHHHHHhhCCCCH----HHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHH
Q 009665          150 TRVVIDHGAVPIFVRLLSSPTD----DVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT  223 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~~~----~v~~~a~~~L~nl~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  223 (529)
                       .......+-..++..+....+    -+....+..++.+..-.-  ..++...-.+.+..+.+.+ +..+.+-...+...
T Consensus        74 -pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~i  151 (1082)
T KOG1410|consen   74 -PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQI  151 (1082)
T ss_pred             -cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHH
Confidence             000111223556666655332    333344444555542211  1122222334667777777 44444444445556


Q ss_pred             HhhhhcCC--CC--CchhhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCC-chhHHHHHHhCcHHHHHHh----cC
Q 009665          224 LSNFCRGK--PQ--PLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVEL----LR  293 (529)
Q Consensus       224 L~~l~~~~--~~--~~~~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~l----L~  293 (529)
                      |..|...-  +.  .....-    ..+..-++++ --+|..-+|..|.....-. .+..+    .|.+..++++    +.
T Consensus       152 LsqLvqemN~~~~~~p~tkH----Rkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q----~~L~~~vL~L~l~Cl~  223 (1082)
T KOG1410|consen  152 LSQLVQEMNQADGMDPSTKH----RKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQ----LGLLMQVLKLNLNCLN  223 (1082)
T ss_pred             HHHHHHHhhCCCCCCcchHH----HHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhH----hhHHHHHHHHHhhhcc
Confidence            66555432  11  110000    0111111111 1234555555555554211 11111    1332222222    21


Q ss_pred             CCC-cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc------CCHHHHHHHHH
Q 009665          294 HPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA------GNVNQIQAIIE  366 (529)
Q Consensus       294 ~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~------~~~~~~~~l~~  366 (529)
                      -+- .........-+++. .-...++..+.+...+..+..+..+- .+...+.|..+|..+++      ++++...++..
T Consensus       224 FDfiGss~DEssed~ctV-QIPTsWRs~f~d~stlqlfFdly~sl-p~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~  301 (1082)
T KOG1410|consen  224 FDFIGSSTDESSEDLCTV-QIPTSWRSSFLDSSTLQLFFDLYHSL-PPELSELALSCLVQLASVRRSLFNGAERAKYLQH  301 (1082)
T ss_pred             ccccccccccccccccce-ecCcHHHHHhcCchHHHHHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            000 00000000000000 01123455566778888889999887 78888999999998886      23333332222


Q ss_pred             cCCHHHHHHHHhcC----ChhHHHHHHHHHHHH
Q 009665          367 AGIIGPLVNLLLNA----EFEIKKEAAWAISNA  395 (529)
Q Consensus       367 ~~~l~~L~~~l~~~----~~~v~~~a~~aL~nl  395 (529)
                        ++....+++.++    |+.--.+-|..|+.+
T Consensus       302 --Lv~Gvk~il~np~~LsD~~nyHeFCRllaRl  332 (1082)
T KOG1410|consen  302 --LVEGVKRILENPQGLSDPANYHEFCRLLARL  332 (1082)
T ss_pred             --HHHHHHHHHhCCcCCCCcchHHHHHHHHHHH
Confidence              555666666654    444444455555544

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=87.65  E-value=6  Score=47.73  Aligned_cols=267  Identities=15%  Similarity=0.177  Sum_probs=142.3

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCC-----ChhhHHhhcCChHHHHHhh-cCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665           80 VWSDDRNIQLDATTQFRKLLSIERS-----PPINEVIQSGVVPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (529)
Q Consensus        80 L~s~~~~~~~~a~~~l~~lls~~~~-----~~~~~~i~~g~i~~Li~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  153 (529)
                      +...+.+.+..+...+..++.....     +..-..+ ...+..+..+- ..++ +.++......+.      ...-...
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v-~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~l  561 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVV-KEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQL  561 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHH-HHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhh
Confidence            3466778888887777766644211     0000001 11222222221 2333 555555444433      1222233


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC
Q 009665          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  233 (529)
Q Consensus       154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  233 (529)
                      ...+.+..+...+..+.-.+++.+...+++++..++...-..+....+..+-.+- .+.-..+......-+..+....+.
T Consensus       562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~  640 (2341)
T KOG0891|consen  562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPV  640 (2341)
T ss_pred             cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHH
Confidence            4445566677777778889999999999999987764322211111111111111 111111111111111111111122


Q ss_pred             CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhc
Q 009665          234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVT  312 (529)
Q Consensus       234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~  312 (529)
                      .........+..++..+...+..+...+..+++.||..........++ ..++.+.+.+.. .+..-+..++++++++..
T Consensus       641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s  719 (2341)
T KOG0891|consen  641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES  719 (2341)
T ss_pred             HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence            222334556667777777888888899999999998765544444444 455555555543 455667889999999987


Q ss_pred             CChhhHHHHH-hcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009665          313 GDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (529)
Q Consensus       313 ~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  356 (529)
                      .......... ...++..+...+.......+|.++...++++...
T Consensus       720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            5443222211 1234555666666665677888888888877664

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.23  E-value=2.3  Score=38.10  Aligned_cols=80  Identities=24%  Similarity=0.275  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCC
Q 009665          130 QLQFEAAWALTNIASGTSENTRVVIDHGA-------VPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGA  200 (529)
Q Consensus       130 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~  200 (529)
                      .-|..|+.+|+.++- ...+.+.++..+-       +..|.+++.. ++...|+.|+-.|.+++..+ ..+|....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            358899999999997 4555555555543       3455556655 78899999999999999655 445566777889


Q ss_pred             hHHHHHHhcc
Q 009665          201 LMPLLAQFNE  210 (529)
Q Consensus       201 i~~l~~~l~~  210 (529)
                      +..|+.++..
T Consensus       218 i~~Li~FiE~  227 (257)
T PF12031_consen  218 ISHLIAFIED  227 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999999943

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=87.15  E-value=6.1  Score=30.18  Aligned_cols=69  Identities=20%  Similarity=0.239  Sum_probs=56.7

Q ss_pred             cCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHH
Q 009665          410 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL  489 (529)
Q Consensus       410 ~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il  489 (529)
                      ...+..|++.+..+++.....++..|..+++...             ....+...|+.+.+.++..+.+++.+.....++
T Consensus        29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3567788888888888888899999998876643             267788899999999999999999998888888


Q ss_pred             Hh
Q 009665          490 ET  491 (529)
Q Consensus       490 ~~  491 (529)
                      +.
T Consensus        96 ~~   97 (98)
T PF14726_consen   96 DQ   97 (98)
T ss_pred             hc
Confidence            65

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=87.02  E-value=20  Score=31.33  Aligned_cols=70  Identities=20%  Similarity=0.271  Sum_probs=55.7

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  190 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  190 (529)
                      .++.++++..+++ ..++..|+.++..+....--+..     -.+|.|+.+..++++.++..|...+..+....+.
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s   78 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHES   78 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence            5677788888888 89999999999888874322222     2579999999999999999999999999865443

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=86.44  E-value=35  Score=33.54  Aligned_cols=215  Identities=14%  Similarity=0.136  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-----CcchHHHHHHHHHHhhcCCh--------hhHHHHH
Q 009665          256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-----SPSVLIPALRTVGNIVTGDD--------MQTQCII  322 (529)
Q Consensus       256 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-----~~~v~~~al~~L~~l~~~~~--------~~~~~~~  322 (529)
                      .++..+|..+...+...++....++. .++..+..+|..-     ...+...|+..|+.++....        ...+.++
T Consensus       111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii  189 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII  189 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence            45566666666555443333333333 3445555555331     23455567777777665321        1112222


Q ss_pred             hc------------------CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh---cCC
Q 009665          323 NH------------------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---NAE  381 (529)
Q Consensus       323 ~~------------------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~---~~~  381 (529)
                      +.                  .-.+.+..-+.......-|.+|+..+..++.........++.. .+..++.-..   ..+
T Consensus       190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~  268 (370)
T PF08506_consen  190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNN  268 (370)
T ss_dssp             HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-
T ss_pred             HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCccc
Confidence            21                  1122222222222134557788888988887534433333321 2333322211   236


Q ss_pred             hhHHHHHHHHHHHHhcCCCH------H-----HHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 009665          382 FEIKKEAAWAISNATSGGSN------E-----QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN  450 (529)
Q Consensus       382 ~~v~~~a~~aL~nl~~~~~~------~-----~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~  450 (529)
                      +.-+..|+..++.++..+..      .     ....+....+++-|. --....|-++..+++.+...-..-.       
T Consensus       269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-------  340 (370)
T PF08506_consen  269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-------  340 (370)
T ss_dssp             HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--------
T ss_pred             HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-------
Confidence            78888999999999986621      0     234455556666666 1123445566666666654432221       


Q ss_pred             CCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHH
Q 009665          451 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL  489 (529)
Q Consensus       451 ~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il  489 (529)
                             .+.+  .+.++.+.....+++.-|+..|...|
T Consensus       341 -------~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  341 -------KEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             -------HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             -------HHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence                   2222  23577788888899888988887653

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=86.42  E-value=26  Score=32.07  Aligned_cols=128  Identities=13%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHH
Q 009665          282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQ  360 (529)
Q Consensus       282 ~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~  360 (529)
                      ...++.++++++.++..    .-..+|-.....-...-..+-.|-++.|..++.++. +.-+|..|+.+|..++...+..
T Consensus        72 ~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~  147 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS  147 (249)
T ss_pred             hhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence            36778889998765542    122223322211111111223356677778886653 4568889999999999866766


Q ss_pred             HHHHHHcCCHHHHHHH-HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH
Q 009665          361 IQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP  415 (529)
Q Consensus       361 ~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~  415 (529)
                      +..+++  .+..++.. +...+..+...-+..++.+-...-...++.+.+.|+++.
T Consensus       148 Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~  201 (249)
T PF06685_consen  148 REEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP  201 (249)
T ss_pred             HHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence            666666  45555554 443333333333333333322212233445556666655

The function of this family is unknown.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=86.21  E-value=8.9  Score=30.67  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhccCCCC--------HHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPD--------PRIVTVCLEGLENIL  439 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~~--------~~v~~~~l~aL~~l~  439 (529)
                      ++..|..-|++.++.|+..++.+|..++..+++.+...+... ..|..+...-...|        ..|+..+-+++..|+
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if  118 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF  118 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence            455778888888999999999999999999988887776554 34555555443233        247777777777665


Q ss_pred             H
Q 009665          440 K  440 (529)
Q Consensus       440 ~  440 (529)
                      .
T Consensus       119 ~  119 (122)
T cd03572         119 S  119 (122)
T ss_pred             c
Confidence            4

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.04  E-value=2.3  Score=34.82  Aligned_cols=74  Identities=9%  Similarity=0.021  Sum_probs=58.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChH-HHHHHHHHHHHHhc
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS  144 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~-v~~~a~~~L~~l~~  144 (529)
                      +.+..+.+.|+++++.++..|+..|-.++.+-..+...++....++..|+.++....... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            467888889999999999999999999887654445566778889999999988765333 88888888877665

Unpublished observations. Domain of unknown function.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=85.87  E-value=16  Score=31.26  Aligned_cols=114  Identities=15%  Similarity=0.175  Sum_probs=69.0

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVA---GDS  188 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~~  188 (529)
                      .+..+..+|.+.+ +.-+..++..+..++..++  .+.+.+.  ..+..++..|+. +...+.+.++.++..|.   .+.
T Consensus        26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5567888898888 8888888888877776432  2334333  356788888887 45778888888888886   333


Q ss_pred             chhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHhhhhcCCC
Q 009665          189 PKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       189 ~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~  232 (529)
                      ++....+.. ..++.++..+-.- .+......++.+|..+....|
T Consensus       103 p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  103 PTLTREIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP  146 (165)
T ss_pred             CchHHHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence            443333222 2233333332111 114556666677776666543

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=85.81  E-value=24  Score=33.69  Aligned_cols=173  Identities=11%  Similarity=0.075  Sum_probs=97.2

Q ss_pred             CcchHHHHHHHHHHhhcCChhhHHHHHhc-----------CChHHHHHHhccC-----CchhHHHHHHHHHHHHhcCCHH
Q 009665          296 SPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVN  359 (529)
Q Consensus       296 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-----------~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~  359 (529)
                      .-.+|..|+.|+.....++++....+++.           .....|...|-+.     .++.--.-|+.++..+..++++
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            34688999999999999888777666621           1122355544411     0343445788889999998888


Q ss_pred             HHHHHHHc--C----------CHHHHHHHHhc-----CChhHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHhccC
Q 009665          360 QIQAIIEA--G----------IIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLN  421 (529)
Q Consensus       360 ~~~~l~~~--~----------~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~  421 (529)
                      .+..+..-  |          .++.+..+|..     .++.++..-+..|+-.... ++.-+..+... ..++.|++...
T Consensus       131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~~  209 (312)
T PF04869_consen  131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFSN  209 (312)
T ss_dssp             HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHHS
T ss_pred             HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHhh
Confidence            76665431  1          35556665544     2667777777778877776 45666666655 46888888643


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHH-HhhchHHHHHHH
Q 009665          422 ---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI-DDAEGLEKIENL  473 (529)
Q Consensus       422 ---~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~g~~~~l~~L  473 (529)
                         ..++-|+..+.-.|+-...++.+...    ..-..+..++ .+.|--..+.++
T Consensus       210 ~~~~~~~~VqGL~A~LLGicyef~~~~s~----~~R~~l~~ll~~riG~d~y~~kl  261 (312)
T PF04869_consen  210 QSSSEDVLVQGLCAFLLGICYEFSTKDSP----IPRATLHPLLTKRIGRDNYFSKL  261 (312)
T ss_dssp             --TCCCHHHHHHHHHHHHHHHHT-S-SCC----C-HHHHHHHHHHHT-HHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHHHhcCCCCC----cCHHHHHHHHHHhcCHHHHHHHH
Confidence               23444555555566666665533221    1123455555 345543334444

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=85.68  E-value=8  Score=32.04  Aligned_cols=72  Identities=14%  Similarity=0.118  Sum_probs=60.4

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~  440 (529)
                      .+..|..-|.++++.++..|+..|-.++.+++......+...+++..|..++. ..++.|+..++..+.....
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            45667777888999999999999999999988777788888899999999887 5677899998888886654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=85.55  E-value=7.3  Score=36.70  Aligned_cols=70  Identities=14%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVR----LLS--------SPTDDVREQAVWAL  181 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L  181 (529)
                      ++|.++.++.+.+ +.++..++.+|..+....+... ..+...|..+.+-.    ++.        .++..+...+.-++
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            7899999999988 9999999999999998544333 23566776655444    333        24456677777777


Q ss_pred             HHhh
Q 009665          182 GNVA  185 (529)
Q Consensus       182 ~nl~  185 (529)
                      ..++
T Consensus       199 ~~L~  202 (282)
T PF10521_consen  199 LSLL  202 (282)
T ss_pred             HHHH
Confidence            7774

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.34  E-value=3.4  Score=36.37  Aligned_cols=97  Identities=15%  Similarity=0.071  Sum_probs=70.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc---C--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009665          346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN---A--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  420 (529)
Q Consensus       346 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~---~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  420 (529)
                      |...|..++++ |+....++++.+--.+...|..   .  ...+|..++.+++.+..++++.....+....+++.+++++
T Consensus       120 aL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm  198 (315)
T COG5209         120 ALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM  198 (315)
T ss_pred             HHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence            34444445544 7777777776553333333332   2  3458889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhh
Q 009665          421 NCPDPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       421 ~~~~~~v~~~~l~aL~~l~~~~~  443 (529)
                      +.+..--+..+..++..++..+.
T Consensus       199 e~gSElSktvaifI~qkil~dDv  221 (315)
T COG5209         199 ELGSELSKTVAIFIFQKILGDDV  221 (315)
T ss_pred             HhhhHHHHHHHHHHHHHHhccch
Confidence            98877666777777777765543

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=85.26  E-value=8.8  Score=29.32  Aligned_cols=93  Identities=13%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCChhhHHh-hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009665           86 NIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  164 (529)
Q Consensus        86 ~~~~~a~~~l~~lls~~~~~~~~~~i-~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  164 (529)
                      ++|..|+..+..-+... --....+. ...++..|++.+..+. +..+..++..|..++. ++.....+.+-|++..|.+
T Consensus         2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k   78 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK   78 (98)
T ss_pred             hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence            45555665554333221 11122233 4567788888888888 6688999999999988 6777788888999888777


Q ss_pred             hhCCCCHHHHHHHHHHH
Q 009665          165 LLSSPTDDVREQAVWAL  181 (529)
Q Consensus       165 lL~~~~~~v~~~a~~~L  181 (529)
                      +=...++..+..+-.++
T Consensus        79 lr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   79 LRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHhcCCHHHHHHHHHHH
Confidence            66555666655544443

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=85.18  E-value=4  Score=33.42  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=58.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC--CChHHHHHHHHHHHHHhc
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIAS  144 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~--~~~~v~~~a~~~L~~l~~  144 (529)
                      +.+..|.+.|+++++.++..|+..|-.+..+-..+....+....++..|+.++...  .++.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999999988765344455555667888899999763  337899999998888776

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=84.69  E-value=32  Score=31.52  Aligned_cols=102  Identities=20%  Similarity=0.196  Sum_probs=58.0

Q ss_pred             hCCChHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHHHHHHHHHHh
Q 009665          155 DHGAVPIFVRLLSSPTDD--------VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLS  225 (529)
Q Consensus       155 ~~g~i~~L~~lL~~~~~~--------v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~  225 (529)
                      +..+++.++++++.++..        +.+....++..++            .|-+..+..++.+. .+.-++..++.+|.
T Consensus        71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~  138 (249)
T PF06685_consen   71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALA  138 (249)
T ss_pred             hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            345789999999775532        2222222333332            34566777777433 36677888999999


Q ss_pred             hhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHh
Q 009665          226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  268 (529)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l  268 (529)
                      .+....+......+.-+...+-..+..++..+....+..++.|
T Consensus       139 ~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL  181 (249)
T PF06685_consen  139 FLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL  181 (249)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc
Confidence            9999876655555444444444445444444334333333333

The function of this family is unknown.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.36  E-value=2.8  Score=37.55  Aligned_cols=84  Identities=20%  Similarity=0.221  Sum_probs=61.2

Q ss_pred             chHHHHHHHHHHhhcCChhhHHHHHhc-------CChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCC
Q 009665          298 SVLIPALRTVGNIVTGDDMQTQCIINH-------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-EAGI  369 (529)
Q Consensus       298 ~v~~~al~~L~~l~~~~~~~~~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~  369 (529)
                      .-+..|+.+|+.++-.. .....++..       .++..|..++...++...|+-|+-.|++++.++......+. +.+.
T Consensus       139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            34788999999998632 233333322       35566777777766888999999999999998776665544 6788


Q ss_pred             HHHHHHHHhcCCh
Q 009665          370 IGPLVNLLLNAEF  382 (529)
Q Consensus       370 l~~L~~~l~~~~~  382 (529)
                      +..|+..+++.+.
T Consensus       218 i~~Li~FiE~a~~  230 (257)
T PF12031_consen  218 ISHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=84.22  E-value=3.4  Score=34.03  Aligned_cols=74  Identities=12%  Similarity=0.023  Sum_probs=59.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC-----CCChHHHHHHHHHHHHHhc
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIAS  144 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~-----~~~~~v~~~a~~~L~~l~~  144 (529)
                      +.+..+.+.|++.++.++..|+..|-.+..+-......++...+++..|++++..     ..++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3678888899999999999999999988876544556677788899999999963     1237899988888877765

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=84.01  E-value=12  Score=35.25  Aligned_cols=138  Identities=12%  Similarity=0.133  Sum_probs=73.5

Q ss_pred             CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH-HHHHhcCChHHHHHHhcc-----------CCchhHHHHHHHHH
Q 009665          283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLLTQ-----------NYKKSIKKEACWTI  350 (529)
Q Consensus       283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~-----------~~~~~v~~~a~~~L  350 (529)
                      -++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+...+..           .++..+-..|.-++
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            468999999999999999999999999998554332 224456665555444421           11344556666666


Q ss_pred             HHHhcC--------CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC
Q 009665          351 SNITAG--------NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC  422 (529)
Q Consensus       351 ~nl~~~--------~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~  422 (529)
                      ..++..        .......++..+++..+...-....+.++...+..+..+...-+....+++-+  +++.|.+.+.+
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~r--ii~~l~~~l~n  276 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQR--IIPVLSQILEN  276 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcC
Confidence            666331        11122223333333333222222235555555555555554333333333322  34444444443

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=83.80  E-value=68  Score=39.46  Aligned_cols=269  Identities=13%  Similarity=0.092  Sum_probs=134.3

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH---HHH--hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCch
Q 009665          162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRD---LVL--SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  236 (529)
Q Consensus       162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~---~~~--~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  236 (529)
                      +...+...+.+++..+..++..+......+.+   ...  ....+..+..+-..++++.++......+.   .  .....
T Consensus       486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~--~~~~~  560 (2341)
T KOG0891|consen  486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---E--RFDAQ  560 (2341)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---c--chhhh
Confidence            44456667888988887766666533222110   001  11223333333323444443333322222   1  01111


Q ss_pred             hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009665          237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  316 (529)
Q Consensus       237 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  316 (529)
                      ..-...+..+...+....-.++..+...+++++..++...-..+....+..+-++-.+....+...+..-+..+..+...
T Consensus       561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~  640 (2341)
T KOG0891|consen  561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV  640 (2341)
T ss_pred             hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence            11223344455555556666778888888888876653322222222222222222222222223333333333333333


Q ss_pred             hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHH
Q 009665          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNA  395 (529)
Q Consensus       317 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl  395 (529)
                      .....++ ..+..+...+..+ ++.+-+.+..+++.+|..+-+.....++ ..++.+.+.+.+. ...-+..+.+++.++
T Consensus       641 ~i~~~v~-~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l  717 (2341)
T KOG0891|consen  641 LISPYVG-PILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL  717 (2341)
T ss_pred             HHHhhcC-chHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence            3333333 4557777777887 7788889999999999843333333344 4666666666653 556778899999999


Q ss_pred             hcCCCHHHHHHHHHcCChHHHHhccCCCC-HHHHHHHHHHHHHH
Q 009665          396 TSGGSNEQIKFLVSQGCIKPLCDLLNCPD-PRIVTVCLEGLENI  438 (529)
Q Consensus       396 ~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~v~~~~l~aL~~l  438 (529)
                      .....-....+....-++..|...+.... ..++..++..+.++
T Consensus       718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~  761 (2341)
T KOG0891|consen  718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL  761 (2341)
T ss_pred             hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence            87543222222222233445555544433 33444555555533

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=83.51  E-value=73  Score=34.75  Aligned_cols=115  Identities=14%  Similarity=0.141  Sum_probs=69.0

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM  448 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~  448 (529)
                      +...+...+..+++..-+..+.++.++..-......+   ...-++.-..-....-..+...+..+|.++....+     
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~-----  513 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP-----  513 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----
Confidence            4555666666677777777887877776532100000   00001111110001111233444455555544432     


Q ss_pred             CCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCC
Q 009665          449 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED  497 (529)
Q Consensus       449 ~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  497 (529)
                            .....++.+.+....+..+.-|++.++|+.|..+|...|+.+.
T Consensus       514 ------~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~  556 (727)
T PF12726_consen  514 ------SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG  556 (727)
T ss_pred             ------HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence                  3468888888999999999999999999999999999997543

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.12  E-value=64  Score=33.79  Aligned_cols=309  Identities=13%  Similarity=0.071  Sum_probs=154.1

Q ss_pred             HHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009665          160 PIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ  238 (529)
Q Consensus       160 ~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  238 (529)
                      +.+++-| .+.++.-|..|-.+|..++.. |++         +....-++..+..+-..--|..+|..+.....+.....
T Consensus         8 e~lCk~LY~s~D~~~R~~AE~~L~e~s~s-pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~q   77 (1082)
T KOG1410|consen    8 ESLCKDLYESTDPTARHRAEKALAELSES-PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQ   77 (1082)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHccC-HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHH
Confidence            4455544 446778888888888887643 333         33333344344444455556677777776664333344


Q ss_pred             hhchHHHHHHhhccCCh----HHHHHHHHHHHHhccC---CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 009665          239 TRPALPALERLIHSNDD----EVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  311 (529)
Q Consensus       239 ~~~~l~~L~~ll~~~d~----~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~  311 (529)
                      .-++-..++..+.+..|    -+....+..++.++..   +....+.... +.+.-+.+.+..++.+....++.+|..++
T Consensus        78 rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FR-d~v~~~~kfl~~~~ve~~~igv~iLsqLv  156 (1082)
T KOG1410|consen   78 RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFR-DPVDDVTKFLQMDNVEHCIIGVQILSQLV  156 (1082)
T ss_pred             HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhh-hhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence            44566677777776443    3455555556666532   1222222333 56777888888877777777777777776


Q ss_pred             cCChhhHHHHHhcCCh-----HHHHHHhccCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhcCC-hh
Q 009665          312 TGDDMQTQCIINHQAL-----PCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAE-FE  383 (529)
Q Consensus       312 ~~~~~~~~~~~~~~~l-----~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~-~~  383 (529)
                      ..-. +     ..+..     ..+..-+.+..-.++-.-|+..|.....-  +.+....+.. .++..-.+++.-+- -.
T Consensus       157 qemN-~-----~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~-~vL~L~l~Cl~FDfiGs  229 (1082)
T KOG1410|consen  157 QEMN-Q-----ADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLM-QVLKLNLNCLNFDFIGS  229 (1082)
T ss_pred             HHhh-C-----CCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHH-HHHHHHhhhcccccccc
Confidence            4210 0     00110     01111111110122333334333333210  1111111110 01222222222110 00


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHh
Q 009665          384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD  463 (529)
Q Consensus       384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~  463 (529)
                      .-.+...-+|+.-  .....+..+.+...+..+.++.++-.+..-..++.+|..+...-...-   |...-..|...+. 
T Consensus       230 s~DEssed~ctVQ--IPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLF---N~aeRa~yl~~Lv-  303 (1082)
T KOG1410|consen  230 STDESSEDLCTVQ--IPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLF---NGAERAKYLQHLV-  303 (1082)
T ss_pred             cccccccccccee--cCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHH-
Confidence            0001111122211  123445556667778889999998888888888888888865543321   1111123444443 


Q ss_pred             hchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665          464 AEGLEKIENLQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       464 ~g~~~~l~~L~~~~~~~v~~~a~~il~~~  492 (529)
                      .|....|++=+.-+++.-|+.-..+|.++
T Consensus       304 ~Gvk~il~np~~LsD~~nyHeFCRllaRl  332 (1082)
T KOG1410|consen  304 EGVKRILENPQGLSDPANYHEFCRLLARL  332 (1082)
T ss_pred             HHHHHHHhCCcCCCCcchHHHHHHHHHHH
Confidence            46666666666667777776666666655

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=82.81  E-value=62  Score=33.42  Aligned_cols=160  Identities=16%  Similarity=0.055  Sum_probs=93.0

Q ss_pred             ChHHHHHHhccC-CchhHHHHHHHHH---HHHhcC-CHHHH---HHHHHcCCHHHHHH----HHhcCChhHHHHHHHHHH
Q 009665          326 ALPCLLDLLTQN-YKKSIKKEACWTI---SNITAG-NVNQI---QAIIEAGIIGPLVN----LLLNAEFEIKKEAAWAIS  393 (529)
Q Consensus       326 ~l~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~l~~L~~----~l~~~~~~v~~~a~~aL~  393 (529)
                      ++..+...+.+. .+.++|..+...+   ...... .+...   ...+..++.|.+-.    --...+...|..+..+|+
T Consensus       320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG  399 (501)
T PF13001_consen  320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG  399 (501)
T ss_pred             HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence            344444444333 1356666666666   554442 23333   33344556665510    011236789999999999


Q ss_pred             HHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHH-HHHH
Q 009665          394 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE-KIEN  472 (529)
Q Consensus       394 nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~l~~  472 (529)
                      .++.....-..   -+-+++..|.+-|+.++++++..+-+||..++..-.....       +   ........+. .+..
T Consensus       400 ~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~-------~---~~~~~~~~~~~l~~~  466 (501)
T PF13001_consen  400 LLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD-------D---EDEQKRLLLELLLLS  466 (501)
T ss_pred             HHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc-------c---hhHHHHHHHHHHHHh
Confidence            99987532211   1235677888888889999999999999999865433210       0   0000000011 1222


Q ss_pred             HhcCCCHHHHHHHHHHHHhhCCCCCC
Q 009665          473 LQSHDNTEIYEKAVKILETYWVEEDE  498 (529)
Q Consensus       473 L~~~~~~~v~~~a~~il~~~~~~~~~  498 (529)
                      ...+....++..|.+-.+.+|+.++-
T Consensus       467 ~~~~~~~~~R~~avk~an~~fpf~d~  492 (501)
T PF13001_consen  467 YIQSEVRSCRYAAVKYANACFPFSDV  492 (501)
T ss_pred             hccchhHHHHHHHHHHHHHhCCccch
Confidence            23455567889999999999987653

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=82.53  E-value=9.4  Score=32.94  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHhcCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 009665          368 GIIGPLVNLLLNAEFEIKKEAAWAISNATSG-GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK  446 (529)
Q Consensus       368 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~  446 (529)
                      -.+|.+++=|...+...+--|...+..+... +.......+  ..++.+|-..|.+.|+++...++.+|..|+..++...
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl--PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL--PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            3688888888888778888888888888877 433333333  3478889999999999999999999999976665543

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=82.44  E-value=4.6  Score=37.76  Aligned_cols=188  Identities=14%  Similarity=0.091  Sum_probs=100.6

Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcC--ChHHHHHHhccC---CchhHHHHHHHHHHHHhcCCHHH
Q 009665          286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ--ALPCLLDLLTQN---YKKSIKKEACWTISNITAGNVNQ  360 (529)
Q Consensus       286 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~  360 (529)
                      ..+...+..=....+-+++..+.-++.. +.....+-..+  +...+..++...   ..+..+--++++++|+..+. ..
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-~~  143 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-PG  143 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-CC
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-cc
Confidence            3444444443445678888888666653 33333332221  244455544332   25677888999999999852 22


Q ss_pred             HHHHHH-cC-CHHHHHHHHhcC----ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh-ccCC-CCHHHHHHHH
Q 009665          361 IQAIIE-AG-IIGPLVNLLLNA----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD-LLNC-PDPRIVTVCL  432 (529)
Q Consensus       361 ~~~l~~-~~-~l~~L~~~l~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~-lL~~-~~~~v~~~~l  432 (529)
                      ...+.. .+ .+...+..+...    +..++..++..+.|++..........=....++..+.. +... .|+++.-.++
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            333432 11 222233222232    57789999999999975211000000000113455555 3333 7899999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCHHHHHHHHH
Q 009665          433 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVK  487 (529)
Q Consensus       433 ~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~~v~~~a~~  487 (529)
                      -||++++..+...            .......|....+.... ....+.+++-+..
T Consensus       224 vAlGtL~~~~~~~------------~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e  267 (268)
T PF08324_consen  224 VALGTLLSSSDSA------------KQLAKSLDVKSVLSKKANKSKEPRIKEVAAE  267 (268)
T ss_dssp             HHHHHHHCCSHHH------------HHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHhccChhH------------HHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence            9999999544332            33333345555555543 4556666665554

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=82.23  E-value=32  Score=29.73  Aligned_cols=75  Identities=9%  Similarity=0.064  Sum_probs=55.7

Q ss_pred             CcHHHHHHhcCCCCcchHHHHHHHHHHhhcC-ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 009665          283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  359 (529)
Q Consensus       283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  359 (529)
                      ..++.+++-|...+...+..|...+..+... .....-.++. .++..|...|.+. ++++...++.+|..++..++.
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~  113 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDM  113 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhh
Confidence            5677788888887778888888887777765 3333333333 6778888888888 999999999999999664333

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=81.25  E-value=46  Score=30.87  Aligned_cols=181  Identities=19%  Similarity=0.190  Sum_probs=98.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chhHHHHHhcCChHHHHHHhccch---hHHHHHHHHHHHhh
Q 009665          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSN  226 (529)
Q Consensus       157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~  226 (529)
                      |+-+.+.+-+.++  ...+.++..|..++...       .+.|-.+.-...+|.++..+....   .......++..|+.
T Consensus        64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~  141 (262)
T PF14225_consen   64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ  141 (262)
T ss_pred             hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence            4444455555543  34455667777766322       112323333334566666663222   12455667788888


Q ss_pred             hhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009665          227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (529)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~  306 (529)
                      +|.......   ...++....+--..+..+....++..|+.-.-  ++.     +..++..++.+|.++-+.++..++.+
T Consensus       142 ~a~~~~~~~---La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~i  211 (262)
T PF14225_consen  142 VAEAQGLPN---LARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQI  211 (262)
T ss_pred             HHHhCCCcc---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            886532221   11122211111112234445555555543211  111     22566778999998888999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      |..+....+-...  ...+++..+.++++++    .-.+|..+|-++..
T Consensus       212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            9999876554332  4556888899999776    34556666655543

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.05  E-value=61  Score=36.96  Aligned_cols=99  Identities=15%  Similarity=0.060  Sum_probs=63.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---cc---hhHHHHHHHHHHHhhhhcCC-CCCchhhh
Q 009665          167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EH---AKLSMLRNATWTLSNFCRGK-PQPLFEQT  239 (529)
Q Consensus       167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---~~---~~~~~~~~a~~~L~~l~~~~-~~~~~~~~  239 (529)
                      .++..+++...+.++.++.....+   .++. + .+.+.+++.   ..   ....+.+.+..+|.-++.+. +..+....
T Consensus       852 s~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci  926 (1610)
T KOG1848|consen  852 SSRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI  926 (1610)
T ss_pred             cCccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence            446778888888888888754322   2222 2 455555553   11   24567778888888888877 66677777


Q ss_pred             hchHHHHHHhhcc-CChHHHHHHHHHHHHhcc
Q 009665          240 RPALPALERLIHS-NDDEVLTDACWALSYLSD  270 (529)
Q Consensus       240 ~~~l~~L~~ll~~-~d~~v~~~a~~~L~~l~~  270 (529)
                      .+++..+...-+. .|-.+--.|+..++.+++
T Consensus       927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsD  958 (1610)
T KOG1848|consen  927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD  958 (1610)
T ss_pred             HHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence            8888888877653 466665556555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	529
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-132
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-128
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-128
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-124
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-124
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-123
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-123
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-123
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-123
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-114
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-109
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-109
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-108
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-108
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-108
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-108
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-106
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-106
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-106
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-106
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-106
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-106
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-106
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-106
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-106
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		9e-36
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		8e-34
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		7e-26
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-22
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		3e-22
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-22
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		5e-22
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-19

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  846 bits (2186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/521 (80%), Positives = 451/521 (86%), Gaps = 4/521 (0%)
Query: 1   MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
           MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA  P+ 
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
            SAA   +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 63  ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           ++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 123 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 182
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
           RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 360 XXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
                       PLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDL
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 422
Query: 420 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
           L CPD RIVTVCLEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN 
Sbjct: 423 LICPDIRIVTVCLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNN 481
Query: 480 EIYEKAVKILETYWVXXXXXXXXXXXXATQAG--FGFAGNG 518
           EIYEKAVKILE YW+            A   G  F F   G
Sbjct: 482 EIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGG 522

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/449 (80%), Positives = 388/449 (86%), Gaps = 3/449 (0%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           SLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R+DFPQL
Sbjct: 37  SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPKC
Sbjct: 97  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
           RDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLIH
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +            
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 431
           PLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RIVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 432 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 491
           LEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE 
Sbjct: 397 LEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 455
Query: 492 YWVXXXXXXXXXXXXATQAG--FGFAGNG 518
           YW+            A   G  F F   G
Sbjct: 456 YWMDEEDDTMGATTVAAPQGATFDFGQGG 484

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/498 (52%), Positives = 331/498 (66%), Gaps = 17/498 (3%)
Query: 10  EVRRSKYKVA--VDAEEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQAHQPLTNS 62
           E RR+ +K      A+E RRRR+   VE+RK KR+E+L K+R      +G  + +   +S
Sbjct: 15  EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74
Query: 63  AALDNKKL----ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
            + D +      + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR
Sbjct: 75  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134
Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
            +EF+  +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+
Sbjct: 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 194
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFE 237
           WALGNVAGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP + 
Sbjct: 195 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWS 253
Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
               ALP L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S 
Sbjct: 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313
Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
            V  PALR VGNIVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGN 372
Query: 358 VNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKP 415
                         PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKP
Sbjct: 373 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 432
Query: 416 LCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 475
           LCDLL   D RI+ V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q 
Sbjct: 433 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQ 491
Query: 476 HDNTEIYEKAVKILETYW 493
           ++N +IYEKA KI+ETY+
Sbjct: 492 NENDKIYEKAYKIIETYF 509

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  454 bits (1169), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 76  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 134
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
           +AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253
           VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 373
           DD+QTQ I+N  AL   L  L  + K+SIKKEACWTISNITAGN               L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 374 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 433
           +++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 434 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493
           GLENIL+ GE E     T G+N +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 381 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 439

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  454 bits (1168), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 76  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 134
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
           +AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253
           VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 373
           DD+QTQ I+N  AL   L  L  + K+SIKKEACWTISNITAGN               L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 374 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 433
           +++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 434 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 493
           GLENIL+ GE E     T G+N +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 384 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
           PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
           V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 490 ETYW 493
           ETY+
Sbjct: 418 ETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  441 bits (1135), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
           PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
           V L+ LENI+K GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENIIKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 490 ETYW 493
           ETY+
Sbjct: 418 ETYF 421

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 71  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 249
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 427
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 428 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 487
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKE-ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 488 ILETYW 493
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 71  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 249
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 427
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 428 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 487
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 488 ILETYW 493
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
           PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
           V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 490 ETYW 493
           ETY+
Sbjct: 419 ETYF 422

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
           PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
           V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 490 ETYW 493
           ETY+
Sbjct: 419 ETYF 422

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  407 bits (1046), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/533 (43%), Positives = 322/533 (60%), Gaps = 22/533 (4%)
Query: 5   PNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGL---QAHQPLTN 61
           P AR    ++K K   D+ E RRRR +  VE+RK K++E +LK+R        A  PL  
Sbjct: 10  PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62  SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 121
           +         S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ 
Sbjct: 67  NRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 126
Query: 122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 181
           FL + D   +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWAL
Sbjct: 127 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 186
Query: 182 GNVAGDSPKCRDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLF 236
           GN+AG     RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  
Sbjct: 187 GNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 246
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
           +     LP L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL    
Sbjct: 247 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 306
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
             ++ PALR +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG
Sbjct: 307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAG 365
Query: 357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 416
             +             LV +L  A+F+ +K AAWAI+N TSGG+ EQI +LV  G I+PL
Sbjct: 366 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPL 425
Query: 417 CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 476
            +LL+  D +I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H
Sbjct: 426 MNLLSAKDTKIIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRH 479
Query: 477 DNTEIYEKAVKILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
           +N  +Y+ ++ ++E Y+              T  GF F   +G P   G FNF
Sbjct: 480 ENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 529

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 44  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 402
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 403 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 456
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 457 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 496

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  390 bits (1003), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  390 bits (1001), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 421 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 460

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  390 bits (1001), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  390 bits (1001), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 373 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 426
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 427 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 466

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/462 (45%), Positives = 290/462 (62%), Gaps = 16/462 (3%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFN 527
            ++E Y+              T  GF F   +G P   G FN
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFN 509

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 42  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 400
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 401 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 454
Query: 487 KILETYW 493
            ++E Y+
Sbjct: 455 NLIEKYF 461

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 487 KILETYW 493
            ++E Y+
Sbjct: 420 NLIEKYF 426

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 289/463 (62%), Gaps = 16/463 (3%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S +   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL R D   +
Sbjct: 9   SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 69  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSM----LRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+  GA+ PLLA        S+    LRN TWTLSN CR K P P  +     LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H +D EVL D CWA+SYL+DG N++I  V++ GV P+LV+LL      ++ PALR 
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV++L  A+F+ +KEA WA++N TSGG+ EQI +LV  G I+PL +LL   D +
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTK 367
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ+H+N  +Y+ ++
Sbjct: 368 IILVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQNHENESVYKASL 421
Query: 487 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 528
            ++E Y+              T  G+ F   +G P   G FNF
Sbjct: 422 SLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGAP---GTFNF 461

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 487 KILETYW 493
            ++E Y+
Sbjct: 420 NLIEKYF 426

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 34  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 94  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 392
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 393 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 446
Query: 487 KILETYW 493
            ++E Y+
Sbjct: 447 NLIEKYF 453

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 487 KILETYW 493
            ++E Y+
Sbjct: 421 NLIEKYF 427

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 487 KILETYW 493
            ++E Y+
Sbjct: 416 NLIEKYF 422

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 487 KILETYW 493
            ++E Y+
Sbjct: 421 NLIEKYF 427

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  382 bits (982), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 487 KILETYW 493
            ++E Y+
Sbjct: 416 NLIEKYF 422

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  148 bits (373), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 8/225 (3%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG---KPQPLFEQTRPALPALERL 249
             V+  GAL P L Q        +L+ A W LSN   G   + Q + +    ALPAL +L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
           + S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  141 bits (356), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 16/249 (6%)
Query: 243 LPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
           LP + + ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421
                      LV LL +   +I +EA WA+SN  SGG NEQI+ ++  G +  L  LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 422 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 481
            P+ +I+   L  L NI   G  +K            QA+ +A  LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238
Query: 482 YEKAVKILE 490
            ++A + LE
Sbjct: 239 QKEAQEALE 247

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 14/206 (6%)
Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
            P++V+ L  P    L  ALR +  I +G + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 345 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 405 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 464
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 465 EGLEKIENLQSHDNTEIYEKAVKILE 490
             LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIH 251
             V+  GAL P L Q        +L+ A W LSN    G  Q    +   AL  LE+L  
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 252 SNDDEVLTDACWALSYL 268
             ++++  +A  AL  L
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 243 LPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
           LP + + ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421
                      LV LL +   +I +EA WA+SN  SGG NEQ + +   G ++ L  L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 422 CPDPRIVTVCLEGLENI 438
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
            P++ + L        + A R    I++  + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 345 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 405 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 464
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 465 EGLEKIENLQSHDNTEIYEKAVKILE 490
             LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 8/199 (4%)
Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIEFLSRDDFPQ 130
           LP MV  + S D   Q +  +  RKL  I    +  I  VI +G +P  ++ LS  +   
Sbjct: 14  LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
           LQ EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +
Sbjct: 71  LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERL 249
               V+  GAL P L Q        +L+ A W LSN    G  Q    +   A PALE+L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 250 IHSNDDEVLTDACWALSYL 268
             S ++++  +A  AL  +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
            P++V+ L  P    L  ALR +  I +G + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 345 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 405 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 464
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 465 EGLEKIENLQSHDNTEIYEKAVKILE 490
                +E LQS  N +I ++A + LE
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 14/245 (5%)
Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
           L +L+ S D E   +A   L+ ++ G    I+A+++AG    LV+LL      V   A R
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 365
            + NI +G D   + I++   +  L+ LLT +    ++KEA   ++NI +G         
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 366 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 425
                  LV LL + + E++KEAA A++N  S G +E IK +V  G ++ L  LL   D 
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 426 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 485
            +       L NI          G T  +    +AI DA G+E ++ L +  ++E+ ++A
Sbjct: 185 EVQKEAARALANIAS--------GPTSAI----KAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Query: 486 VKILE 490
            + LE
Sbjct: 233 QRALE 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	529
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	0.0
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-52
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-114
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-72
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-68
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-64
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-55
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-26
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-113
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-83
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-78
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-70
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-56
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-28
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-89
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-58
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-53
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-79
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-76
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-64
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-70
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-61
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-26
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-14
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-66
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-28
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-17
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-61
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-55
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-35
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-24
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-58
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-25
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-24
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-21
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-48
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-39
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-43
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-38
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-37
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-24
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-04
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-21
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-07
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-07
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	4e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-11
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-11
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	7e-10
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-07
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-08
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	4e-08
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	6e-08
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-05
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	1e-05
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-05

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  591 bits (1524), Expect = 0.0
 Identities = 274/523 (52%), Positives = 349/523 (66%), Gaps = 22/523 (4%)

Query: 9   TEVRRSKYK--VAVDAEEGRRRREDNMVEIRKNKREESLLKKRR---------EGLQAHQ 57
            E RR+ +K      A+E RRRR+   VE+RK KR+E+L K+R             +   
Sbjct: 14  PEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDES 73

Query: 58  PLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVP 117
            ++      ++  + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVP
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133

Query: 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
           R +EF+  +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF 236
           +WALGNVAGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
                ALP L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312

Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
             V  PALR VGNIVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAG 371

Query: 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIK 414
           N  QIQA+I+A +I PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIK
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431

Query: 415 PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ 474
           PLCDLL   D RI+ V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQ 490

Query: 475 SHDNTEIYEKAVKILETYWVEEDE--DEPLPPGDATQAGFGFA 515
            ++N +IYEKA KI+ETY+ EE++  DE + P +   AG  F 
Sbjct: 491 QNENDKIYEKAYKIIETYFGEEEDAVDETMAPQN---AGNTFG 530

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  575 bits (1484), Expect = 0.0
 Identities = 222/512 (43%), Positives = 310/512 (60%), Gaps = 15/512 (2%)

Query: 23  EEGRRRREDNMVEIRKNKREESLLKKRREGLQ-AHQPLTNSAALDNKKLESLPAMVAGVW 81
             G   R   M E    K E   +     G     + + +  +       S+  +V G+ 
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGIN 67

Query: 82  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
           S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +QFE+AWALTN
Sbjct: 68  SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTN 127

Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
           IASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    RDLV+ +GA+
Sbjct: 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 187

Query: 202 MPLLAQFNEH----AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDE 256
            PLLA              LRN TWTLSN CR K P P  +     LP L RL+H ND E
Sbjct: 188 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247

Query: 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316
           VL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR +GNIVTG D 
Sbjct: 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307

Query: 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376
           QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +QIQ ++  G++  LV +
Sbjct: 308 QTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366

Query: 377 LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 436
           L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +I+ V L+ + 
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426

Query: 437 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 496
           NI +A E        G     +  I++  GL+KIE LQ H+N  +Y+ ++ ++E Y+  E
Sbjct: 427 NIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480

Query: 497 DEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 528
           +E++     + T  GF F         G FNF
Sbjct: 481 EEEDQNVVPETTSEGFAFQVQ--DGAPGTFNF 510

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  555 bits (1431), Expect = 0.0
 Identities = 258/431 (59%), Positives = 307/431 (71%), Gaps = 4/431 (0%)

Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQ 130
               M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
           LQFE+AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 249
           CRD VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
           +  +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369
           IVTGDD+QTQ I+N  AL  LL LL  + K+SIKKEACWTISNITAGN  QIQ +I+A I
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 370 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
              L+++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
           V L GLENIL+ GE E       G+N +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 380 VALNGLENILRLGEQEAKRNG-TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438

Query: 490 ETYWVEEDEDE 500
           E Y+  EDED 
Sbjct: 439 EHYFGTEDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  183 bits (467), Expect = 1e-52
 Identities = 60/351 (17%), Positives = 130/351 (37%), Gaps = 56/351 (15%)

Query: 141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA--GDSPKCRDLVLSN 198
                   N  +          + ++ S + + +  A      +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 258
           G +                                            +E L    +  + 
Sbjct: 64  GVVARF-----------------------------------------VEFLKRKENCTLQ 82

Query: 259 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318
            ++ W L+ ++ G + + + VI+AG  P  +ELL      V   A+  +GNI     M  
Sbjct: 83  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142

Query: 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378
             +++   LP LL L ++  + ++ + A W +SN+  G     +    +  +  L  LL 
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202

Query: 379 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438
            ++ ++  +A WA+S  +  G N++I+ ++  G  + L +LL   D ++V+  L  + NI
Sbjct: 203 VSDTDVLADACWALSYLSD-GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261

Query: 439 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 489
           +   +               Q I +   L+ + +L S     I ++A   +
Sbjct: 262 VTGDDI------------QTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  351 bits (903), Expect = e-114
 Identities = 63/438 (14%), Positives = 128/438 (29%), Gaps = 19/438 (4%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           + A+V  + + +       T      LS  R   +  + +SG +P  ++ L       + 
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGSPV-DSVL 115

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
           F A   L N+          V   G +   V LL+             L  +A  + + +
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
            ++L++G    L+     +    +L   +  L                  + AL   +  
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235

Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
               ++ +  W L  LSD    +       G+   LV+LL     +V+  A   + N+  
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

Query: 313 GDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIEAG 368
            +      +     +  L+  + +   ++ I + A   + ++T+ +        A+    
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352

Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 428
            +  +V LL         +A   +    +         L  QG I  L  LL        
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQDTQ 411

Query: 429 TVCLEGLENILKAGE---------AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
                G                      +            I     +     L      
Sbjct: 412 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE 471

Query: 480 EIYEKAVKILETYWVEED 497
            I   A  +L     +++
Sbjct: 472 NIQRVAAGVLCELAQDKE 489

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  240 bits (614), Expect = 6e-72
 Identities = 80/419 (19%), Positives = 143/419 (34%), Gaps = 26/419 (6%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P +   +  +D+ +   A     +L   E S     +    +V   +  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
              A  L N+ S   E    +   G +P  V++L SP D V   A+  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIH 251
             V   G L   +        +  L   T  L     G  +  L         AL  ++ 
Sbjct: 134 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 252 SNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310
           +   E L       L  LS  +++K  A++EAG    L   L  PS  ++   L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370
               D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G I
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 371 GPLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPR 426
             LV  +L A    +I + A  A+ + TS           +     +  +  LL+ P   
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 485
            +     GL   L    A                + +   + ++  L    + +   + 
Sbjct: 368 PLIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDTQRRT 414

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  230 bits (587), Expect = 5e-68
 Identities = 61/384 (15%), Positives = 136/384 (35%), Gaps = 21/384 (5%)

Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
            +  + +  +P   + L+ +D   +  +AA  +  ++   +    ++     V   VR +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 167 SSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225
            +  D +        L N++    +    +  +G + P L +       S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGI-PALVKMLGSPVDSVLFYAITTLH 123

Query: 226 NFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 284
           N    +    +  +    L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
              LV ++R  +   L+     V  +++        I+    +  L   L  +  + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 242

Query: 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
              WT+ N++     Q       G++G LV LL + +  +   AA  +SN T   + +  
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNK 298

Query: 405 KFLVSQGCIKPLCDLL--NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 462
             +   G I+ L   +        I    +  L ++    +  +         +   A+ 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE---------MAQNAVR 349

Query: 463 DAEGLEKIENLQSHDNTEIYEKAV 486
              GL  +  L    +     KA 
Sbjct: 350 LHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  219 bits (558), Expect = 7e-64
 Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 19/344 (5%)

Query: 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207
                 +   A+P   +LL+     V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 208 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 267
                 +   R    TL N    +   L       +PAL +++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 268 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327
           L         AV  AG   ++V LL   +   L      +  +  G+      I+     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387
             L++++     + +       +  ++  + N+  AI+EAG +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 388 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 447
             W + N +   + +       +G +  L  LL   D  +VT     L N+       K 
Sbjct: 244 CLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK- 298

Query: 448 MGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAVKIL 489
                        +    G+E +     ++ D  +I E A+  L
Sbjct: 299 -----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  195 bits (498), Expect = 2e-55
 Identities = 79/473 (16%), Positives = 145/473 (30%), Gaps = 50/473 (10%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
             A+V  + +      L  T++  K+LS+  S     ++++G +      L+     +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEAGGMQALGLHLTDPS-QRLV 241

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 193 DLVLSNGALMPLL-AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP----ALPALE 247
            +V   G +  L+        +  +   A   L +      +    Q        LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 308 GNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKKEA 346
                 + ++                        I     +P  + LL  +  ++I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 477

Query: 347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 406
              +  + A +    +AI   G   PL  LL +    +   AA  +   +     +  K 
Sbjct: 478 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 536

Query: 407 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK-------NMGNTGGVNLFAQ 459
           L S      L             + L+        G  +        + G  G   L   
Sbjct: 537 L-SVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMD 595

Query: 460 AIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGF 512
            + + E            +                 +D  + LPPGD+ Q  +
Sbjct: 596 PMMEHEMGGHHPGADYPVDGLPDLGHA---------QDLMDGLPPGDSNQLAW 639

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  113 bits (283), Expect = 1e-26
 Identities = 31/218 (14%), Positives = 79/218 (36%), Gaps = 15/218 (6%)

Query: 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332
           N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
            +         +    T+ N++        AI ++G I  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 393 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG 452
            N        ++  +   G ++ +  LLN  + + + +  + L+ +     A  N  +  
Sbjct: 123 HNLLLHQEGAKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-----AYGNQES-- 174

Query: 453 GVNLFAQAIDDAEGLEK-IENLQSHDNTEIYEKAVKIL 489
                   I  + G +  +  ++++   ++     ++L
Sbjct: 175 -----KLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  344 bits (885), Expect = e-113
 Identities = 64/430 (14%), Positives = 125/430 (29%), Gaps = 19/430 (4%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           + A+V  + + +       T      LS  R   +  + +SG +P  ++ L       + 
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGSPV-DSVL 118

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
           F A   L N+          V   G +   V LL+             L  +A  + + +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252
            ++L++G    L+     +    +L   +  L                  + AL   +  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312
               ++ +  W L  LSD    +       G+   LV+LL     +V+  A   + N+  
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 313 GDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QIQAIIEAG 368
            +      +     +  L+  + +   ++ I + A   + ++T+ +        A+    
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 428
            +  +V LL         +A   +    +         L  QG I  L  LL        
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQ 414

Query: 429 TVCLEGLENILKAGEAEKNMGNTGGVNLFA---------QAIDDAEGLEKIENLQSHDNT 479
                G                 G                 I     +     L      
Sbjct: 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE 474

Query: 480 EIYEKAVKIL 489
            I   A  +L
Sbjct: 475 NIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  265 bits (680), Expect = 9e-83
 Identities = 76/418 (18%), Positives = 138/418 (33%), Gaps = 24/418 (5%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P +   +  +D+ +   A     +L   E S     +    +V   +  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
              A  L N+ S   E    +   G +P  V++L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 251
             V   G L   +        +  L   T  L     G     L         AL  ++ 
Sbjct: 137 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371
              D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G I 
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 372 PLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 427
            LV  +L A    +I + A  A+ + TS           +     +  +  LL+ P    
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371

Query: 428 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 485
           +     GL   L    A                + +   + ++  L    + +   + 
Sbjct: 372 LIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDTQRRT 417

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  253 bits (647), Expect = 8e-78
 Identities = 75/443 (16%), Positives = 141/443 (31%), Gaps = 46/443 (10%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +PA+V  + S   ++   A T    L  + +      V  +G + + +  L++ +  +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 160

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKC 191
                 L  +A G  E+  +++  G     V ++ + T   +       L  ++      
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219

Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
           +  ++  G +   L          +++N  WTL N      +         L  L +L+ 
Sbjct: 220 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 276

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI--PALRTVGN 309
           S+D  V+T A   LS L+         V + G    LV  +        I  PA+  + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 310 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
           + +      M    +  H  LP ++ LL          +A   +    A        + E
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 395

Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--------------------SNEQIKF 406
            G I  LV LL+ A  + ++  +   +                                 
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455

Query: 407 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 466
           +     I     LL  P   I  V    L  + +  EA             A+AI+    
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-------------AEAIEAEGA 502

Query: 467 LEKIENLQSHDNTEIYEKAVKIL 489
              +  L    N  +   A  +L
Sbjct: 503 TAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  232 bits (594), Expect = 5e-70
 Identities = 61/354 (17%), Positives = 120/354 (33%), Gaps = 22/354 (6%)

Query: 138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197
           A+ N+ +         +   A+P   +LL+     V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEV 257
              +  ++        +   R    TL N    +   L       +PAL +++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377
              I+       L++++     + +       +  + +   +   AI+EAG +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 378 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 437
            +    + +   W + N +   + +       +G +  L  LL   D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 438 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAVKIL 489
           +       K              +    G+E +     ++ D  +I E A+  L
Sbjct: 293 LTCNNYKNK------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  194 bits (496), Expect = 6e-56
 Identities = 67/371 (18%), Positives = 125/371 (33%), Gaps = 34/371 (9%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
             A+V  + +      L  T++  K+LS+  S     ++++G +      L+     +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLV 244

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 193 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRGKPQP----LFEQTRPALPALE 247
            +V   G +  L+        +  +   A   L +      +        +    LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367
                 + ++ + I+                      E C    +I A +V+    I   
Sbjct: 422 TQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIRGL 459

Query: 368 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 427
             I   V LL +    I++ AA  +         E  + + ++G   PL +LL+  +  +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 428 VTVCLEGLENI 438
            T     L  +
Sbjct: 518 ATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  117 bits (296), Expect = 2e-28
 Identities = 51/286 (17%), Positives = 93/286 (32%), Gaps = 28/286 (9%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQL 131
           L  +V  + SDD N+   A      L +         V Q G +   +  +    D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 132 QFEAAWALTNIASGTSENTRV---VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
              A  AL ++ S   E       V  H  +P+ V+LL  P+     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
           P     +   GA+ P L Q    A     R  +   +     +                 
Sbjct: 387 PANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--------------- 430

Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308
                 +E++     AL  L+   +++I  +      P  V+LL  P  ++   A   + 
Sbjct: 431 ----RMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354
            +    +   + I    A   L +LL  +  + +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  292 bits (750), Expect = 1e-96
 Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 14/249 (5%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
            LP + + ++S+D +    A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421
           QA+I+AG +  LV LL +   +I +EA WA+SN  S G NEQI+ ++  G +  L  LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190

Query: 422 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 481
            P+ +I+   L  L NI   G  +K            QA+ +A  LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238

Query: 482 YEKAVKILE 490
            ++A + LE
Sbjct: 239 QKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  273 bits (701), Expect = 2e-89
 Identities = 90/241 (37%), Positives = 135/241 (56%), Gaps = 4/241 (1%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +  Q+ 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQIL 71

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 251
             V+  GAL P L Q        +L+ A W LSN   G   Q        ALPAL +L+ 
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +   A   +  + 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

Query: 312 T 312
           +
Sbjct: 251 S 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  192 bits (489), Expect = 6e-58
 Identities = 88/282 (31%), Positives = 136/282 (48%), Gaps = 44/282 (15%)

Query: 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 216
             +P   + L+S     +  A      +  D  +    V+  GAL               
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL--------------- 56

Query: 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 276
                                      PAL +L+ S ++++L +A WALS ++ G N++I
Sbjct: 57  ---------------------------PALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
           QAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q +I+  ALP L+ LL  
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-S 148

Query: 337 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396
           +  + I +EA W +SNI +G   QIQA+I+AG +  LV LL +   +I +EA WA+SN  
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208

Query: 397 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438
           SG  NEQ + +   G ++ L  L +  + +I     E LE +
Sbjct: 209 SG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  267 bits (686), Expect = 9e-88
 Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 2/197 (1%)

Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
            LP + + ++S D + L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421
           QA+I+AG +  LV LL +   +I +EA WA+SN  SGG NEQ + +   G ++ L  L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 422 CPDPRIVTVCLEGLENI 438
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  177 bits (450), Expect = 9e-53
 Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 11/209 (5%)

Query: 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
                  +P+ ++ L+  D  Q    A   L+ IASG +E  + VID GA+P  V+LLSS
Sbjct: 7   HHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
           P + + ++A+WAL N+A    +    V+  GAL  L+          +L+ A W LSN  
Sbjct: 66  PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIA 124

Query: 229 RGKPQPLFEQTRP-----ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 283
            G      EQ +      ALPAL +L+ S ++++L +A WALS ++ G N++ QAV EAG
Sbjct: 125 SGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180

Query: 284 VCPRLVELLRHPSPSVLIPALRTVGNIVT 312
              +L +L  H +  +   A   +  + +
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  261 bits (669), Expect = 7e-79
 Identities = 71/432 (16%), Positives = 138/432 (31%), Gaps = 26/432 (6%)

Query: 62  SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 121
              +  +  +            D + Q   T   R      R+    E +  G+     +
Sbjct: 58  DNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQ 112

Query: 122 FL-SRDDFPQLQFEAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
           F  +     Q   E +  L +      +      +   A+P   +LL+     V  +A  
Sbjct: 113 FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAV 172

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
            +  ++        ++ S   +  ++        +   R  + TL N    +   L    
Sbjct: 173 MVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK 232

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
              +PAL  ++ S  D VL  A   L  L         AV  AG   ++V LL   +   
Sbjct: 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
           L      +  +  G+      I+       L++++ + Y           +  + +   +
Sbjct: 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSS 351

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
              AI+EAG +  L   L +    + +   W + N +   + +       +G +  L  L
Sbjct: 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQL 407

Query: 420 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL--QSHD 477
           L   D  +VT     L N+       K              +    G+E +     ++ D
Sbjct: 408 LGSDDINVVTCAAGILSNLTCNNYKNK------------MMVCQVGGIEALVRTVLRAGD 455

Query: 478 NTEIYEKAVKIL 489
             +I E A+  L
Sbjct: 456 REDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  253 bits (648), Expect = 8e-76
 Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 46/453 (10%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +PA+V  + S   ++   A T    L  + +      V  +G + + +  L++ +  +  
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 293

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD-VREQAVWALGNVAGDSPKC 191
                 L  +A G  E+  +++  G     V ++ + T + +       L  ++      
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN 352

Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
           +  ++  G +   L          +++N  WTL N      +         L  L +L+ 
Sbjct: 353 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 409

Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGN 309
           S+D  V+T A   LS L+         V + G    LV  +        +  PA+  + +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

Query: 310 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
           + +      M    +  H  LP ++ LL          +A   +    A        + E
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 528

Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--------------------SNEQIKF 406
            G I  LV LL+ A  + ++  +   +                                 
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV 588

Query: 407 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 466
           +     I     LL  P   I  V    L  + +  EA             A+AI+    
Sbjct: 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-------------AEAIEAEGA 635

Query: 467 LEKIENLQSHDNTEIYEKAVKILETYWVEEDED 499
              +  L    N  +   A  +L     ++ +D
Sbjct: 636 TAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  222 bits (566), Expect = 3e-64
 Identities = 74/431 (17%), Positives = 142/431 (32%), Gaps = 43/431 (9%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
             A+V  + +      L  T++  K+LS+  S     ++++G +      L  D   +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLV 377

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 193 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTRPALPALE 247
            +V   G +  L+        +  +   A   L +        +      +    LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 367
                 + ++ + I+                      EAC    +I A +++    I   
Sbjct: 555 TQQQFVEGVRMEEIV----------------------EACTGALHILARDIHNRIVIRGL 592

Query: 368 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 427
             I   V LL +    I++ AA  +         E  + + ++G   PL +LL+  +  +
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 650

Query: 428 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 487
            T     L  + +    +        V L          L + E +  ++  ++      
Sbjct: 651 ATYAAAVLFRMSEDKPQDYKKR--LSVELT-------SSLFRTEPMTWNETGDLGLDIGA 701

Query: 488 ILETYWVEEDE 498
             E     +D+
Sbjct: 702 QGEPLGYRQDD 712

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  228 bits (584), Expect = 1e-70
 Identities = 59/343 (17%), Positives = 111/343 (32%), Gaps = 34/343 (9%)

Query: 88  QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147
           Q+ A  +          P +++                         A   L  + S   
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63

Query: 148 ENTRVVIDHGAVPIFVRLLSSPTD-----------DVREQAVWALGNVAGDSPKCRDLVL 196
           E+   + + G +     LL    +            +R  A  AL N+       +  + 
Sbjct: 64  EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR--PALPALERL-IHSN 253
           S    M  L    +     + +     L N          +  R   ++ AL    +   
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 254 DDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-------ALR 305
            +  L     AL  LS   T +K       G    LV  L + S +  +         LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365
            V +++  ++   Q +  +  L  LL  L +++  +I   AC T+ N++A N    +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV 408
           + G +  L NL+ +    I   +A A+ N  +    +     +
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  203 bits (518), Expect = 7e-61
 Identities = 55/325 (16%), Positives = 108/325 (33%), Gaps = 23/325 (7%)

Query: 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA 206
           +           +      + +P +     AV  L  ++ D  + R  +   G L  +  
Sbjct: 22  TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAE 80

Query: 207 ----------QFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSND 254
                       N+H  +++ R A   L+N   G           +  + AL   + S  
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 255 DEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPS-PSVLIPALRTVGNI-V 311
           +++       L  LS   +   +  + E G    L+E        S L   L  + N+  
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

Query: 312 TGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKEACWTISNIT---AGNVNQIQAII 365
              + +        AL  L+  LT   Q    +I +     + N++   A N +  Q + 
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260

Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 425
           E   +  L+  L +    I   A   + N ++  + +  + L   G +  L +L++    
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHK 319

Query: 426 RIVTVCLEGLENILKAGEAEKNMGN 450
            I       L N++    A+    N
Sbjct: 320 MIAMGSAAALRNLMANRPAKYKDAN 344

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  109 bits (274), Expect = 2e-26
 Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           + A+VA + S+  ++Q    +  R L           + + G V   +E           
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 133 FEAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSSP----TDDVREQAVWALGNVAG- 186
                AL N+++  +EN   +    GA+   V  L+      T  + E     L NV+  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 187 --DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPA 242
              +   R ++  N  L   L Q  +   L+++ NA  TL N     P  Q        A
Sbjct: 249 IATNEDHRQILRENNCL-QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 306

Query: 243 LPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAGVC 285
           +  L+ LIHS    +   +  AL  L        K   ++  G  
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 72.2 bits (177), Expect = 6e-14
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 303 ALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361
            L  +  I    +        +   +    + +     +     A   +  ++    ++ 
Sbjct: 9   MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM-PAPVEHQICPAVCVLMKLSFDEEHR- 66

Query: 362 QAIIEAGIIGPLVNLL-----------LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ 410
            A+ E G +  +  LL            +    +++ A  A++N T G    +      +
Sbjct: 67  HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126

Query: 411 GCIKPLCDLLNCPDPRIVTVCLEGLENI 438
           GC++ L   L      +  V    L N+
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNL 154

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  220 bits (562), Expect = 3e-66
 Identities = 67/451 (14%), Positives = 134/451 (29%), Gaps = 71/451 (15%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +P+ +++LS  D  + Q   A+ + +         + V   G +   V LL SP  +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A  AL N+   S   +        +   ++         + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 236 FEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 279
            E    ALP L   +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 339
             +G+   L+  +++   +           +    ++  +           L+   +N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 340 KSIKKEACWTISNITAGNVNQIQAI-------------IEAGIIGPLVNLLLNAEFEIKK 386
                  C++  +    N N    +               +  I   +NL+  ++ +   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 387 EAA-WAISNATSGGSN----EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441
           EA   A+ N T+              + +  +  +  LL   +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 442 GEAEKNMGNTGGVNL----------------------------------FAQAIDDAEGL 467
               + MGN     +                                   A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 468 EKIENL-QSHDNTEIYEKAVKILETYWVEED 497
             I NL +S  + +  E A  +L   W  ++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  117 bits (293), Expect = 2e-28
 Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 173 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------KLSMLR 218
            R      E  +  L N++                    A   + +           M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 219 NATWTLSNFCRG-KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-- 275
           N    L       K       +      L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 276 ---IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332
                  ++    P++  LL+  +  V+      + N+          ++ +Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 333 LLTQNYKKSIKKE-----ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 386
           LLT +   +   E     AC+T+ N+ A      +    + ++  ++NL  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 387 EAAWAISN 394
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 98.4 bits (244), Expect = 3e-22
 Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 25/230 (10%)

Query: 241 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 300
             +P   + + S D++      + + +         Q V + G   +LV+LLR P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360
             A   + N+V               +   + LL +     I+K+    + N+++ +   
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL- 120

Query: 361 IQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSNEQI 404
            +  + A  +  L + ++                  + E+   A   + N +S  +  + 
Sbjct: 121 -KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG-RQ 178

Query: 405 KFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKAGEAEKNM 448
                 G I  L   +         D + V  C+  L N+    +AE   
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 83.7 bits (206), Expect = 2e-17
 Identities = 34/309 (11%), Positives = 85/309 (27%), Gaps = 25/309 (8%)

Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 255
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQ 58

Query: 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGD 314
            V   A  AL  L   +                V LLR   +  +       + N+ + D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 315 DMQTQCIINHQALPCLLDLL---------------TQNYKKSIKKEACWTISNITAGNVN 359
           +++ +  +   ALP L D +                +     +   A   + N+++ +  
Sbjct: 119 ELKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
           +      +G+I  L+  + N     + +     +      +             + L   
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236

Query: 420 LNCPDPRI-VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHD 477
                     T C     + +     +  +         +  +  ++ +   +  +    
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296

Query: 478 NTEIYEKAV 486
                E   
Sbjct: 297 KDATLEACA 305

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  207 bits (527), Expect = 4e-61
 Identities = 71/406 (17%), Positives = 133/406 (32%), Gaps = 79/406 (19%)

Query: 18  VAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMV 77
           +    ++ R RRE  ++ + +  R         E  +AH+P              +    
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETC--WEWQEAHEP-------------GMDQDK 154

Query: 78  AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----------D 127
             + +   +    A     KL   E       + + G +    E L  D           
Sbjct: 155 NPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHY 212

Query: 128 FPQLQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 186
              L+  A  ALTN+  G   N   +    G +   V  L S ++D+++     L N++ 
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272

Query: 187 D-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245
                 +  +   G++  L+                                        
Sbjct: 273 RADVNSKKTLREVGSVKALM---------------------------------------- 292

Query: 246 LERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-- 302
            E  +    +  L     AL  LS   T +K       G    LV  L + S +  +   
Sbjct: 293 -ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351

Query: 303 -----ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
                 LR V +++  ++   Q +  +  L  LL  L +++  +I   AC T+ N++A N
Sbjct: 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARN 410

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
               +A+ + G +  L NL+ +    I   +A A+ N  +    + 
Sbjct: 411 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  192 bits (488), Expect = 2e-55
 Identities = 76/444 (17%), Positives = 150/444 (33%), Gaps = 65/444 (14%)

Query: 52  GLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI 111
           GL          +    K+E + ++++ + + D   + D +   R LL++  S      +
Sbjct: 13  GLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISM 66

Query: 112 -QSGVVPRFIEFLSRDDFPQ-----------LQFEAAWALTNIASGTSENTRVVIDHGAV 159
            QSG +P  I+ L  +D               +  A+ AL NI     ++ R   +   +
Sbjct: 67  RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVL 126

Query: 160 PI------------------------FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195
            +                            + +P +     AV  L  ++ D  + R  +
Sbjct: 127 HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAM 185

Query: 196 LSNGALMPLL----------AQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPAL 243
              G L  +              N+H  +++ R A   L+N   G    +      +  +
Sbjct: 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245

Query: 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPS-PSVLI 301
            AL   + S  +++       L  LS   +   +  + E G    L+E        S L 
Sbjct: 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305

Query: 302 PALRTVGNI-VTGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKEACWTISNIT--- 354
             L  + N+     + +        AL  L+  LT   Q    +I +     + N++   
Sbjct: 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365

Query: 355 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 414
           A N +  Q + E   +  L+  L +    I   A   + N ++  + +  + L   G + 
Sbjct: 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVS 424

Query: 415 PLCDLLNCPDPRIVTVCLEGLENI 438
            L +L++     I       L N+
Sbjct: 425 MLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  137 bits (347), Expect = 1e-35
 Identities = 60/385 (15%), Positives = 120/385 (31%), Gaps = 54/385 (14%)

Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD------------VREQAVW 179
           + + +  L  + S + ++   +   G +P+ ++LL     D             R +A  
Sbjct: 46  KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104

Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
           AL N+    P  +        L  LL Q   +                C        E  
Sbjct: 105 ALHNIIHSQPDDKRGRREIRVL-HLLEQIRAY-------------CETCWE----WQEAH 146

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR------ 293
            P +   +  + +  +  +  A   L  LS     +  A+ E G    + ELL+      
Sbjct: 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMY 205

Query: 294 -----HPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEAC 347
                H S ++   A   + N+  GD      +      +  L+  L    +  +++   
Sbjct: 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED-LQQVIA 264

Query: 348 WTISNITAGNVNQIQ-AIIEAGIIGPLVNLLLNAEFE-IKKEAAWAISNATSGGSNEQIK 405
             + N++       +  + E G +  L+   L  + E   K    A+ N ++  +  +  
Sbjct: 265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324

Query: 406 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA-QAIDDA 464
                G +  L   L           +E    IL      +N+ +    N    Q + + 
Sbjct: 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL------RNVSSLIATNEDHRQILREN 378

Query: 465 EGLEKIENLQSHDNTEIYEKAVKIL 489
             L+ +       +  I   A   L
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTL 403

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  103 bits (258), Expect = 7e-24
 Identities = 47/215 (21%), Positives = 77/215 (35%), Gaps = 12/215 (5%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           + A+VA + S+  ++Q    +  R L           + + G V   +E           
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 133 FEAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSSP----TDDVREQAVWALGNVAG- 186
                AL N+++  +EN   +    GA+   V  L+      T  + E     L NV+  
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364

Query: 187 --DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPA 242
              +   R ++  N  L  LL        L+++ NA  TL N     P  Q        A
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 422

Query: 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
           +  L+ LIHS    +   +  AL  L      K +
Sbjct: 423 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  203 bits (517), Expect = 1e-58
 Identities = 73/457 (15%), Positives = 147/457 (32%), Gaps = 66/457 (14%)

Query: 98  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
           L S+ +  P     +   +P  I  L       ++  AA  L ++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 216
            +P+ V LL  P  +V   A  AL N++ G     +  + +   +  L+    +   + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI------------------HSNDDEVL 258
               T TL N          E    AL AL   +                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH----------------------- 294
           T+    L  +S   ++  + + E  G+   L+ +++                        
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 295 --------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
                    +      A     N  T      + +   + +   + LL ++   +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 347 CWTISNITAGNVNQI----QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402
              I N+ AG          A+ +   +  + +LL N    + K A+ A+ N      + 
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA---VDA 386

Query: 403 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 462
           + K L+ +  I  L   L            E  + ++        +         A+ + 
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSE--DTVISILNTINEV--IAENLEAAKKLR 442

Query: 463 DAEGLEKIENLQSHDNTE--IYEKAVKILETYWVEED 497
           + +G+EK+  +    N        A  +L+T W  ++
Sbjct: 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  107 bits (268), Expect = 7e-25
 Identities = 55/315 (17%), Positives = 107/315 (33%), Gaps = 42/315 (13%)

Query: 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273
               R +  +L +  +G P P   + +P LP +  ++    D V ++A   L +L    +
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80

Query: 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC-IINHQALPCLLD 332
                V +    P LV LL HP   V + A   + NI  G D   +  I N   +P L+ 
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------------ 380
           LL +     + +    T+ N+++ +  +++ +  A  +  L + ++              
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVIIPHSGWEREPNEDC 198

Query: 381 ------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL------NCPDPRIV 428
                    +    A  + N +S  S  + K     G +  L  ++         D ++V
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 429 TVCLEGLENILKAGEAEKNMGN-------------TGGVNLFAQAIDDAEGLEK-IENLQ 474
             C+  L N+      E                          + +   E +   I  L+
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 475 SHDNTEIYEKAVKIL 489
                 I E +   +
Sbjct: 319 ESKTPAILEASAGAI 333

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  105 bits (261), Expect = 4e-24
 Identities = 55/386 (14%), Positives = 111/386 (28%), Gaps = 68/386 (17%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           +P +V  +    + + L A    + +           +     VP  +  L +     L 
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151

Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP------------------TDDVR 174
                 L N++S   ++ ++ I   A+      +  P                   + V 
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFC 228
                 L NV+ +  + R  +     L+  L    +           ++ N    L N  
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 229 R---------------------------GKPQPLFEQTRPALPALERLIHSNDDEVLTDA 261
                                        +   L  Q       +  L  S    +L  +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 262 CWALSYLSDGT----NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317
             A+  L  G          A+ +      + +LL +    V+  A   + N+      +
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--R 387

Query: 318 TQCIINHQALPCLLDLLT-------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 370
            + +I   A+P L+  L         N+ +        TI+ + A N+   + + E   I
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447

Query: 371 GPLVNLLLNAEFEIK--KEAAWAISN 394
             LV +  +     K  + AA  +  
Sbjct: 448 EKLVLINKSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 95.0 bits (235), Expect = 7e-21
 Identities = 58/379 (15%), Positives = 116/379 (30%), Gaps = 35/379 (9%)

Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
           P  Q E     +  +               +P  + +L    D V+  A   L ++   +
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79

Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP--LFEQTRPALPAL 246
            K +  V     +  L+   +   K  +   A   L N   G+ Q   +  +    +PAL
Sbjct: 80  DKVKTDVRKLKGIPVLVGLLDHPKK-EVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 247 ERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
            RL+  + D ++       L  LS   + K++ V  A     L + +  P          
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNE 196

Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC--------WTISNITAGN 357
                           +      CL ++ ++  +   K   C        + +       
Sbjct: 197 DCKPRHIEW-----ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQK 251

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEI-----KKEAAWAISNATSGGSNEQIKFLVSQGC 412
            +  + +     +  L NL      EI      +EAA  ++N T        + L     
Sbjct: 252 DSDSKLVENC--VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEV 309

Query: 413 IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE 471
           ++    LL     P I+      ++N+                     A+   + L  I 
Sbjct: 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY--------IRSALRQEKALSAIA 361

Query: 472 NLQSHDNTEIYEKAVKILE 490
           +L ++++  + + A   L 
Sbjct: 362 DLLTNEHERVVKAASGALR 380

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  169 bits (428), Expect = 2e-48
 Identities = 41/240 (17%), Positives = 82/240 (34%), Gaps = 7/240 (2%)

Query: 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSSP 169
           + S  +P       +    Q +  A   L ++     +N        G   +  R L + 
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAG 94

Query: 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229
              +R +A   +G  + +    ++ VL  GAL  LL   +  A  ++   A + +S   R
Sbjct: 95  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154

Query: 230 GKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 287
            +      F +       L R +     ++   + + L  L  G  +    +   G+  +
Sbjct: 155 EQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213

Query: 288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347
           LV L+R          L  + ++VT      +     +    L +LL    +   + E  
Sbjct: 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  145 bits (366), Expect = 1e-39
 Identities = 42/263 (15%), Positives = 94/263 (35%), Gaps = 8/263 (3%)

Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
           ++P  P       + D +    A   L+ L +  ++       +G+   +   L   +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
           +   A + +G          + ++   AL  LL LL ++   +++ +A + IS +     
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 418
             +   +       L+  +     ++K ++A+ + N    G  E    L S G ++ L  
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVA 216

Query: 419 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD- 477
           L+           L  L +++              + L  + +       + + LQ H+ 
Sbjct: 217 LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL-EELLR-----HRCQLLQQHEE 270

Query: 478 NTEIYEKAVKILETYWVEEDEDE 500
             E  E   K+L+T +    +D 
Sbjct: 271 YQEELEFCEKLLQTCFSSPADDS 293

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.5 bits (224), Expect = 3e-20
 Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 2/181 (1%)

Query: 82  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
           +    ++  A            +    +V+  G + + +  L RD    ++ +A +A++ 
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
           +           +      + +R +      ++ ++ + L N+    P+ +  + S G +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211

Query: 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDA 261
              L             +    L +     PQ + E   P L   E L H        + 
Sbjct: 212 -QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270

Query: 262 C 262
            
Sbjct: 271 Y 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  162 bits (411), Expect = 5e-43
 Identities = 61/447 (13%), Positives = 133/447 (29%), Gaps = 61/447 (13%)

Query: 86  NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145
           +    A+    ++                 +  +I+        + +     A+T + +G
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 146 TSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 204
             +   +VV   G + + + + ++  +  +  A   L   +         +   G  + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQG--VDI 334

Query: 205 LAQFNEHAKLSMLRNATWTLSNFC-----RGKPQPLFEQTRPALPALER---LIHSNDDE 256
           L +        +   A   L             +P  +     L    R   +    D +
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316
           +   A   L+YL+     K + + +      L++L R  + S L   + T  N+    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 317 QT--------------------------------QCIINHQALPCLLDLLTQNYKKSIKK 344
           Q                                   + N      L  L       + ++
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQE 513

Query: 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-Q 403
                ++ +  G       +++ G +  L+ + L    + K+ A  A++      + E  
Sbjct: 514 LIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572

Query: 404 IKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 462
                S   I+PL +LL            L  L N+    E+ +            Q I 
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR------------QRII 620

Query: 463 DAEGLEKIENLQSHDNTEIYEKAVKIL 489
             +G+ KIE     D+  +   A + L
Sbjct: 621 KEQGVSKIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  149 bits (376), Expect = 2e-38
 Identities = 67/496 (13%), Positives = 135/496 (27%), Gaps = 91/496 (18%)

Query: 46  LKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSP 105
           L K          +         KL             D++I+  A       L+++   
Sbjct: 354 LCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAEC 412

Query: 106 PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------------------- 146
               +     +   ++     +     +       N+ +                     
Sbjct: 413 KEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQH 471

Query: 147 -------------SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193
                        ++   V+ + G       L  + + + +E     L  V G   + R 
Sbjct: 472 IPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRG 530

Query: 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRP--ALPALERLI 250
            V+  G +  LL    E  +    R+AT  L+       P+  F   R    +  L  L+
Sbjct: 531 KVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL 589

Query: 251 HSNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
             +   +   ++  AL+ L+       Q +I+     ++   L      +          
Sbjct: 590 QQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYL---------- 639

Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369
                                             + A   + N+                
Sbjct: 640 ---------------------------------TRAAAQCLCNLVMSEDVIKMFEGNNDR 666

Query: 370 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 429
           +  L  L  + + E     A A++  TS       K L     +  L  L+  P P +  
Sbjct: 667 VKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQH 726

Query: 430 VCLEGLENILKAG-EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 488
             +  + N++ AG E  K +  T  + L +       GL ++ +       E+  + +  
Sbjct: 727 RGIVIILNMINAGEEIAKKLFETDIMELLS-------GLGQLPDDTRAKAREVATQCLAA 779

Query: 489 LETYWVEEDEDEPLPP 504
            E Y + E  D    P
Sbjct: 780 AERYRIIERSDNAEIP 795

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 83.0 bits (204), Expect = 7e-17
 Identities = 30/210 (14%), Positives = 61/210 (29%), Gaps = 3/210 (1%)

Query: 82  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
                   ++      L S+  S     +I+   V +   +L  +D   L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASMNESV-RQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCN 649

Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
           +            ++  V     L     ++       AL  +   S KC + +L+  + 
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTD 260
           + +L     +   ++       + N      +   +      +  L  L    DD     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  137 bits (346), Expect = 1e-37
 Identities = 38/214 (17%), Positives = 63/214 (29%), Gaps = 20/214 (9%)

Query: 116 VPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
           + R +  L  D   P     AA  + +     SE  + V     +   ++LL    +DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
                AL N+  +    +  V     +  LL    +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 235 LFEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 278
                  AL  L   I                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 279 VIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIV 311
           +    G+   LV  +R           +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 98.9 bits (246), Expect = 9e-24
 Identities = 30/204 (14%), Positives = 71/204 (34%), Gaps = 20/204 (9%)

Query: 241 PALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298
             L     ++ ++      ++ A   + +     ++  + V +     +L++LL+  +  
Sbjct: 8   MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67

Query: 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358
           V       + N+V  D+     +     +P LL +L Q      KK+    + N+++ + 
Sbjct: 68  VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127

Query: 359 NQIQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSNE 402
            +   I EA  +  L   ++                  +F+I       + N +S G++ 
Sbjct: 128 LKNLMITEA--LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

Query: 403 QIKFLVSQGCIKPLCDLLNCPDPR 426
           +       G I  L   +      
Sbjct: 186 RKAMRRCDGLIDSLVHYVRGTIAD 209

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 21/137 (15%)

Query: 356 GNVNQIQAIIEAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 413
           G+   ++  +E       V++L   +        AA  I +      +E  K +     I
Sbjct: 1   GSNADMEMTLE-----RAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGI 54

Query: 414 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IEN 472
             L  LL   +  +       L N+       ++  N          + +  G+ + ++ 
Sbjct: 55  LKLLQLLKVQNEDVQRAVCGALRNL-----VFEDNDNK-------LEVAELNGVPRLLQV 102

Query: 473 LQSHDNTEIYEKAVKIL 489
           L+   + E  ++   +L
Sbjct: 103 LKQTRDLETKKQITGLL 119

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 19/121 (15%)

Query: 82  SDDRNIQLDATTQFRKLLSIER----------SPPINEVIQ--SGVVPRFIEFLSRDDFP 129
           + D   +   T     L S ++                +I   SG         +     
Sbjct: 106 TRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165

Query: 130 QLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSSPTDDVR------EQAVWALG 182
            + +     L N++S  ++  + +    G +   V  +     D +      E  V  L 
Sbjct: 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILH 225

Query: 183 N 183
           N
Sbjct: 226 N 226

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 92.8 bits (230), Expect = 2e-21
 Identities = 44/262 (16%), Positives = 89/262 (33%), Gaps = 27/262 (10%)

Query: 50  REGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE 109
           RE L   + L     +       L  ++  +  D   +  +A +    +          E
Sbjct: 11  REALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT------RE 64

Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
            +   ++ +    L + +   L  E A A   +A    E  + +I     P+        
Sbjct: 65  DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIG 119

Query: 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229
            +  +    +AL  +A  +P     ++ +   M +L+  N   KL+ L      +     
Sbjct: 120 DEKTKINVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL----NFIEAMGE 173

Query: 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 289
              + +     P LP +  L+H  D+ V   A  AL +L+   +   + VI      + +
Sbjct: 174 NSFKYV----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRL 223

Query: 290 ELLRHPSPSVLIPALRTVGNIV 311
           E L   S  V       +  ++
Sbjct: 224 EELNDTSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 74.4 bits (182), Expect = 3e-15
 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 20/201 (9%)

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
           V+ + IE L  DD   +   A   +  IA    +    ++      +F  L  S    + 
Sbjct: 33  VLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
           ++   A G +A + P+         +++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
                   +     ++ S + E    A   +  + + +   +   +     PR++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 295 PSPSVLIPALRTVGNIVTGDD 315
               V   A+  + ++ T +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.3 bits (179), Expect = 9e-14
 Identities = 66/474 (13%), Positives = 143/474 (30%), Gaps = 139/474 (29%)

Query: 65  LDNKKLESLPAMVAGVWS----DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI 120
            D K ++ +P     + S    D   +  DA +   +L     S          +V +F+
Sbjct: 33  FDCKDVQDMPK---SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE------MVQKFV 83

Query: 121 EFLSRDDFPQLQFEAAWALTNIAS---GTSENTRVVID-----HGAVPIFVRLLSSPTDD 172
           E + R ++        + ++ I +     S  TR+ I+     +    +F         +
Sbjct: 84  EEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYN 130

Query: 173 V-REQAVWALGNVA-GDSPKCRDLVLSNGALMP------LLAQ--FNEHAKLSMLRNATW 222
           V R Q    L        P  +++++ +G  +       +      +   +  M     W
Sbjct: 131 VSRLQPYLKLRQALLELRPA-KNVLI-DG--VLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 223 -TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 281
             L N C   P+ + E        L++L++  D           +  SD +   I+  I 
Sbjct: 187 LNLKN-CN-SPETVLEM-------LQKLLYQIDPN--------WTSRSDHS-SNIKLRIH 228

Query: 282 AGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 340
           + +   L  LL+     + L+        ++   ++Q     N   L C + L T+   K
Sbjct: 229 S-IQAELRRLLKSKPYENCLL--------VL--LNVQNAKAWNAFNLSCKILLTTRF--K 275

Query: 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400
            +          ++A     I           L +  +        E    +        
Sbjct: 276 QV-------TDFLSAATTTHI----------SLDHHSMT--LT-PDEVKSLLLKYL---- 311

Query: 401 NEQIKFLVSQGC-IKPL-CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNT------G 452
           + + + L  +     P    ++                      E+ ++   T       
Sbjct: 312 DCRPQDLPREVLTTNPRRLSII---------------------AESIRDGLATWDNWKHV 350

Query: 453 GVNLFAQAIDDA-EGLEKIENLQSHDNTEIYEKAVKI----LETYWVEEDEDEP 501
             +     I+ +   LE  E  +  D   ++  +  I    L   W +  + + 
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 2e-11
 Identities = 94/603 (15%), Positives = 174/603 (28%), Gaps = 189/603 (31%)

Query: 5   PNARTEVRR----------SKYKVAVDAEEGRRRREDN----MVEIRKNKREESLLKKRR 50
            +A +   R             +  V+          N    M  I+  +R+ S++ +  
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 51  EGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI--- 107
              +    L N    DN+           V      ++L      + LL +  +  +   
Sbjct: 113 I--EQRDRLYN----DNQVFAKYN-----VSRLQPYLKLR-----QALLELRPAKNVLID 156

Query: 108 -----------NEVIQSGVVPRFIEF------LSRDDFPQLQFEAAWALTNIASG----- 145
                       +V  S  V   ++F      L   + P+   E    L           
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 146 --TSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALGNVAGDSPKCRDLV 195
              S N ++ I H       RLL S           +V+    W   N+      C+ L+
Sbjct: 217 SDHSSNIKLRI-HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-----SCKILL 270

Query: 196 LSNGA---------------LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 240
            +                  L             S+L             +PQ L  +  
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-------RPQDLPREVL 323

Query: 241 PALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---CPRLVELLRH-- 294
              P    +I  S  D + T   W          DK+  +IE+ +    P      R   
Sbjct: 324 TTNPRRLSIIAESIRDGLAT---W--DNWKHVNCDKLTTIIESSLNVLEP---AEYRKMF 375

Query: 295 ------PSPSVLIPA--LRTV-GNIVTGDDMQTQCIINHQALPCLLD-----------LL 334
                 P PS  IP   L  +  +++  D M    ++N      L++            +
Sbjct: 376 DRLSVFP-PSAHIPTILLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISIPSI 431

Query: 335 TQNYKKSIKKEA--------------CWTISNITAGNVNQ---------IQAIIEAGIIG 371
               K  ++ E                +   ++    ++Q         ++ I     + 
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 372 PLVNLLLNAEF-EIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDP-RI 427
               + L+  F E K        NA+    N  +Q+KF         +CD  N P   R+
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-----ICD--NDPKYERL 544

Query: 428 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 487
           V      + + L   + E+N+  +   +L   A+               ++  I+E+A K
Sbjct: 545 V----NAILDFLP--KIEENLICSKYTDLLRIAL-------------MAEDEAIFEEAHK 585

Query: 488 ILE 490
            ++
Sbjct: 586 QVQ 588

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 70.6 bits (173), Expect = 9e-14
 Identities = 45/323 (13%), Positives = 87/323 (26%), Gaps = 69/323 (21%)

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
                   L  D     +  +A  L                  AV + +   S      R
Sbjct: 24  NDDELFRLL-DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRR 71

Query: 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234
           +   + LG +     KC D V +      L           +   A  + +  C+  P  
Sbjct: 72  DIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKNPIY 125

Query: 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
             +     +   +         V     +A+S ++D               P L+ LL+ 
Sbjct: 126 SPK----IVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKD 170

Query: 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354
           P+  V   A   +      +              C +++L     + ++ EA   +S   
Sbjct: 171 PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRK 220

Query: 355 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 414
              V           +  L + L      +  +   A               L  +  + 
Sbjct: 221 DKRV-----------LSVLCDELKKN--TVYDDIIEAAGE------------LGDKTLLP 255

Query: 415 PLCDLL-NCPDPRIVTVCLEGLE 436
            L  +L    D  I+T  ++ L+
Sbjct: 256 VLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 36/336 (10%), Positives = 85/336 (25%), Gaps = 79/336 (23%)

Query: 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231
             + +A    G          D       L  LL   N   +     ++   L       
Sbjct: 5   YQKRKASKEYGLYNQCKKLNDD------ELFRLLDDHNSLKR----ISSARVLQLR---- 50

Query: 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291
                   + A+          +        + L  +        +   +          
Sbjct: 51  ------GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMA 99

Query: 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351
           L   S  V   A+ +       + + +      + +             ++++   + IS
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKS-TNVRRATAFAIS 153

Query: 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 411
            I            +   I  L+NLL +   +++  AA+AI+               +  
Sbjct: 154 VIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYD----------NSD 192

Query: 412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD-------A 464
                 ++L   +  +    + GL              +   +++    +          
Sbjct: 193 IRDCFVEMLQDKNEEVRIEAIIGLSYR----------KDKRVLSVLCDELKKNTVYDDII 242

Query: 465 EGLEKIEN----------LQSHDNTEIYEKAVKILE 490
           E   ++ +          L   D+ EI   A+  L+
Sbjct: 243 EAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 45/201 (22%)

Query: 98  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
           + S  +    N +    +V +       D    ++   A+A++ I            D  
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKA 159

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
            +P+ + LL  P  DVR  A +A+     D+   RD        + +L   NE  +    
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR---- 209

Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
             A   LS            + +  L  L   +    + V  D   A   L D       
Sbjct: 210 IEAIIGLSYR----------KDKRVLSVLCDEL--KKNTVYDDIIEAAGELGD------- 250

Query: 278 AVIEAGVCPRLVELLRHPSPS 298
                 + P L  +L     +
Sbjct: 251 ----KTLLPVLDTMLYKFDDN 267

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 59.8 bits (145), Expect = 4e-12
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 12 RRSKYK-VAVDAEEGRRRREDNMVEIRKNKREESLLKKRR 50
          R  ++K    D+ E RRRR +  VE+RK K+++ +LK+R 
Sbjct: 3  RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 57/245 (23%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           V  +I+ L  D    ++  AA+AL  I            D  AV   ++ L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A  ALG +  +            A+ PL+    +     + ++A   L           
Sbjct: 69  AAADALGQIGDER-----------AVEPLIKAL-KDEDGWVRQSAAVALGQI-------- 108

Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
                 A+  L + +   D  V   A +AL  + D      +AV        L++ L+  
Sbjct: 109 --GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
              V   A   +G I  G +         +    +  L  +      +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA-ETGTGFARKVAVNYLETHKS 203

Query: 356 GNVNQ 360
            N + 
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 42/249 (16%), Positives = 79/249 (31%), Gaps = 56/249 (22%)

Query: 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 214
           D   V ++++ L   +  VR  A +ALG +  +            A+ PL+    +    
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKAL-KDEDA 64

Query: 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274
            + R A   L                 A+  L + +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334
             +  +E      L++ L+     V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
            ++    +++ A   +  I               +   +  L        +K A   +  
Sbjct: 153 -KDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200

Query: 395 ATSGGSNEQ 403
             S   +  
Sbjct: 201 HKSFNHHHH 209

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 63.5 bits (154), Expect = 8e-11
 Identities = 58/339 (17%), Positives = 117/339 (34%), Gaps = 24/339 (7%)

Query: 105 PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164
           P ++  +++ +   F   L  DD P ++  AA  L   A     +    +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 165 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224
           L S   D VR  AV A  N+A    +          +MP L Q  E     +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIA----QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266

Query: 225 SNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 283
           +   +     + +     +PA + L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQKAVGPEITKTD--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343
           + P + EL+   +  V       +  +          +     +  LL L     K    
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLS-------PILGKDNTIEHLLPLFLAQLKDECP 377

Query: 344 KEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402
           +     ISN+     V  I+ + ++ ++  +V L  +A++ ++      +         E
Sbjct: 378 EVRLNIISNLDCVNEVIGIRQLSQS-LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436

Query: 403 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 441
                ++  C+  L D        I       L+ +++ 
Sbjct: 437 FFDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEK 471

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 50.8 bits (121), Expect = 8e-07
 Identities = 42/287 (14%), Positives = 84/287 (29%), Gaps = 22/287 (7%)

Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 218
           + + +  L +    +R  ++  L  +A        +  +   L+P L          +L 
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIA----LALGVERTRSELLPFLTDTIYDED-EVLL 66

Query: 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278
                L  F      P +      LP LE L    +  V   A  +L  +S   +     
Sbjct: 67  ALAEQLGTFTTLVGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-- 122

Query: 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 338
            +EA   P +  L      +    A               +  +         +L   + 
Sbjct: 123 -LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFRNLC-SDD 176

Query: 339 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398
              +++ A   +              +++ II    NL  + +  ++  A  A  N    
Sbjct: 177 TPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233

Query: 399 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 445
              E ++ LV    +  L         R+  +  +    + KA   E
Sbjct: 234 LPQEDLEALV----MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE 276

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 16/200 (8%)

Query: 73  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
           LPA+V         ++L        L         +E +        + +L  D    ++
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL----NSLCMAWLV-DHVYAIR 458

Query: 133 FEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
             A   L  +      E     I    +P  + +   P    R   ++ +  ++    + 
Sbjct: 459 EAATSNLKKLVEKFGKEWAHATI----IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD 514

Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
                    ++P + +       ++  N   +L            +      P LE+L  
Sbjct: 515 ITTKH----MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--VKPILEKLTQ 568

Query: 252 SNDDEVLTDACWALSYLSDG 271
             D +V   A  AL+ LS  
Sbjct: 569 DQDVDVKYFAQEALTVLSLA 588

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 40/324 (12%), Positives = 106/324 (32%), Gaps = 14/324 (4%)

Query: 70  LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERS-PPINEVIQSGVVPRFIEFLSRDDF 128
           +++L   +       R+I           L    S   +   +   +  R    +++ + 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
             +Q EA   + ++ S       V      +   +  L+SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 248
             C ++V  +  +  LL++ +++  +S  R     ++   R     + E     +P + +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308
             + +DDE+      A          ++   +   +    ++ L +       P      
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKYLTYD------PNYNYDD 315

Query: 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368
                + M      +             +    +++ A   +  +     +++       
Sbjct: 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV-VSTRHEMLPEFYKT 374

Query: 369 IIGPLVNLLLNAEFEIKKEAAWAI 392
           +   L++     E  +K +   A 
Sbjct: 375 VSPALISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 48.2 bits (113), Expect = 6e-06
 Identities = 34/247 (13%), Positives = 80/247 (32%), Gaps = 25/247 (10%)

Query: 108  NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167
             +   + V     +  +      ++  A  +L  +      + ++ +      + +   S
Sbjct: 811  PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFS 866

Query: 168  SPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226
            SP+++V+  A +ALG+++ G+ P+    VL      P       H+   ++ +A+     
Sbjct: 867  SPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS----- 921

Query: 227  FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286
                    L          L +     ++         L         K+  +    + P
Sbjct: 922  -----VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLP 968

Query: 287  RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
            RL   L   S       +  V   ++ D  Q    +    +   L  L      ++++ A
Sbjct: 969  RLKGYLISGSSYARSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVA 1026

Query: 347  CWTISNI 353
              T ++ 
Sbjct: 1027 LVTFNSA 1033

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 61.0 bits (147), Expect = 7e-10
 Identities = 49/343 (14%), Positives = 94/343 (27%), Gaps = 31/343 (9%)

Query: 107 INEVIQSGVVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163
           +  V +  ++P  +  L          ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223
           + LS     VR    W L   A               +  LL +  +  K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 224 LSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 283
            +         L       L  L         + L     A+  L         +V    
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL-------ADSVGHHL 518

Query: 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343
             P  ++        +L+P L    N++  +D           L C L  +    +    
Sbjct: 519 NKPEYIQ--------MLMPPLIQKWNMLKDEDKD-----LFPLLEC-LSSVATALQSGFL 564

Query: 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
                         VN +Q  +   ++         A  +     A  + +  + G    
Sbjct: 565 PYCEPVYQRC----VNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN 620

Query: 404 IKFLVSQGCIKP-LCDLLNCPDPRIVTVCLEGLENILKAGEAE 445
           I+ LV++  I   +   +    P +       L ++ KA    
Sbjct: 621 IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 663

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 41/311 (13%), Positives = 90/311 (28%), Gaps = 35/311 (11%)

Query: 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 259
            ++PLL +   H +  +  +    L     G  Q +       +P L + +      V +
Sbjct: 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 418

Query: 260 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319
             CW LS  +     +        +   L++ +   +  V   A      +    +    
Sbjct: 419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE---EEACT 475

Query: 320 CIINH--QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377
            ++ +    L  L+      Y+          I  +     + +       ++ P +   
Sbjct: 476 ELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534

Query: 378 LNAEFEIKKEAAWAISNATSGGSNEQIKFL-----VSQGCIKPLCDLLN----------- 421
            N   +  K+    +   +S  +  Q  FL     V Q C+  +   L            
Sbjct: 535 WNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ 594

Query: 422 --CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
              PD   + V L+ L  + +                  Q +  +  L  +         
Sbjct: 595 YEAPDKDFMIVALDLLSGLAEGLGGN-----------IEQLVARSNILTLMYQCMQDKMP 643

Query: 480 EIYEKAVKILE 490
           E+ + +  +L 
Sbjct: 644 EVRQSSFALLG 654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 53/219 (24%)

Query: 71  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSG---------------- 114
           E +   +  +  D   ++  A     K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 115 ---VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 171
               V   I+ L +D+   ++  AA AL  I            D  AV   ++ L     
Sbjct: 74  DERAVEPLIKAL-KDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231
            VR  A +ALG             + +   +  L +  +     + ++A   L       
Sbjct: 122 FVRIAAAFALGE------------IGDERAVEPLIKALKDEDGWVRQSAADALGEI---- 165

Query: 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270
                        A+E+L  +        A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 35/263 (13%), Positives = 72/263 (27%), Gaps = 68/263 (25%)

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
           +      +                 +   +    +     + R A + L           
Sbjct: 2   RGSHHHHHHTDPE-----------KVEMYIKNL-QDDSYYVRRAAAYALGKI-------- 41

Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
                 A+  L + +   D  V   A  AL  + D      +  +E      L++ L+  
Sbjct: 42  --GDERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDE 88

Query: 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
              V   A   +G I  GD+         +A+  L+  L       ++  A + +  I  
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDED-WFVRIAAAFALGEIGD 136

Query: 356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP 415
                         + PL+  L + +  +++ AA A+              +  +     
Sbjct: 137 -----------ERAVEPLIKALKDEDGWVRQSAADALGE------------IGGERVRAA 173

Query: 416 LCDLLNCPDPRIVTVCLEGLENI 438
           +  L          V +  LE  
Sbjct: 174 MEKLAETGTGFARKVAVNYLETH 196

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 51/364 (14%), Positives = 121/364 (33%), Gaps = 45/364 (12%)

Query: 107 INEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165
           I+E +++ +   +++ L R  +   +Q  +A  L    S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR-NATWTL 224
           +S       E +V AL  ++      + ++ SN +   +L    +  K++         +
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIM 401

Query: 225 SNFCRGKPQPLFEQTRPALPALERLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAV 279
           +N      +                           E             D      + +
Sbjct: 402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYI 453

Query: 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT--QN 337
           +   +   L   + + SP+     +R + NI    +   Q +    A+  +L+ L   Q+
Sbjct: 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQD 512

Query: 338 YKKSIKKEACWTISNITA----GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK------- 386
             + I+   C  ++ +      G + +  + + A  I  L  LL  +             
Sbjct: 513 IGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA--IPFLFELLPRSTPVDDNPLHNDEQ 570

Query: 387 -------EAAWAISNATSGGSNEQIK----FLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 435
                  EA  A++N  S  +++  +     + ++     + +L+   +  +    LE +
Sbjct: 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630

Query: 436 ENIL 439
            N++
Sbjct: 631 SNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 52.1 bits (124), Expect = 4e-07
 Identities = 48/299 (16%), Positives = 85/299 (28%), Gaps = 67/299 (22%)

Query: 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
              N + ++    +    R + + + + ++Q V  + N+          +   GA+  +L
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIIL 504

Query: 206 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL 265
                      L N                         AL R++   +  ++       
Sbjct: 505 ---------EYLANKQDIGE-----------PIRILGCRALTRMLIFTNPGLIF------ 538

Query: 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 325
                     + A+      P L ELL   +P    P           +D Q +   N++
Sbjct: 539 -----KKYSALNAI------PFLFELLPRSTPVDDNPLH---------NDEQIKLTDNYE 578

Query: 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385
           AL  L +L +     S  +E C  I             +        + NL+L+    ++
Sbjct: 579 ALLALTNLASSE--TSDGEEVCKHI-------------VSTKVYWSTIENLMLDENVPLQ 623

Query: 386 KEAAWAISNATSGGSNEQIKFL-----VSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439
           +     ISN  S       KF       S      L  LL   D            NI 
Sbjct: 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA 682

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 50/349 (14%), Positives = 103/349 (29%), Gaps = 42/349 (12%)

Query: 95  FRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154
              L+ + ++   +  I    +      +S D+  +++  +     ++ S   + T + I
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGS---QFTEIFI 118

Query: 155 -DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHA 212
                V + + LL      VR   V  L ++      + + ++L +   +  L      +
Sbjct: 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS 178

Query: 213 KLSMLRNATWTLSNFCRGKP--QPL--FEQTRPALPALERLIH----SNDDEVLTDACWA 264
           +  +  +    L    R     Q +  FE    A   L  +I     S+   V+ D    
Sbjct: 179 REVIRNDGVLLLQALTRSNGAIQKIVAFEN---AFERLLDIITEEGNSDGGIVVEDCLIL 235

Query: 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV---------------LIPALRTVGN 309
           L  L    N       E     R+         +                L+  L +  N
Sbjct: 236 LQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295

Query: 310 IVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGN-VNQIQ-AIIE 366
                    + +     L  L  + +       I  E   T+S +  G  VNQ   A + 
Sbjct: 296 PPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355

Query: 367 AGIIGPLVNLLLN--------AEFEIKKEAAWAISNATSGGSNEQIKFL 407
           A    P   +++           F ++    +            Q + +
Sbjct: 356 APSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 55.2 bits (132), Expect = 4e-08
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
               I  +   D   L++  A+ +    +GT  N+ V        +    +S   DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            AV ALG V                +  ++   ++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646

Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
                 A+  L+ L     D V   A  ALS +     +K        + P++ ++ ++
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK--------LNPQVADINKN 692

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 54.4 bits (130), Expect = 6e-08
 Identities = 55/350 (15%), Positives = 122/350 (34%), Gaps = 45/350 (12%)

Query: 107 INEVIQSGVVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163
             +   + ++   +EF+      D  + +  A  A  +I  G  +  R    H A+P  +
Sbjct: 358 FAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL 417

Query: 164 RLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222
            L++  +  V+E   W +G +A   +          G +   L    +H K++   N +W
Sbjct: 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSW 475

Query: 223 TLSNFCRGKPQPLFEQTRPALPA-LERLIHS-----NDDEVLTDACWALSYLSDGTNDKI 276
           T+ N      +          PA ++ LI +     N+      A  AL+ + +   D +
Sbjct: 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV 535

Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
                + +   +++         L   +    N +T +D Q+   +    L  L      
Sbjct: 536 AETSAS-ISTFVMD--------KLGQTMSVDENQLTLEDAQSLQELQSNILTVL------ 580

Query: 337 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW-AISNA 395
                         + +   + + ++ + +  ++G    LL   +    ++  + AIS  
Sbjct: 581 --------------AAVIRKSPSSVEPVADM-LMGLFFRLLEKKDSAFIEDDVFYAISAL 625

Query: 396 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 445
            +       K+L  +     L   LN  D  +    +  + +I  + E +
Sbjct: 626 AASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED 673

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 50/343 (14%), Positives = 107/343 (31%), Gaps = 24/343 (6%)

Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA---VPIFVRLLSSPTD-DVRE 175
           ++    +    ++  +  AL  +       ++ ++       + I     S+ T   VR 
Sbjct: 140 VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A+ AL +         +       LM ++ +  +   + +   A   L          +
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259

Query: 236 FEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
                 AL AL    + S +D+V +      S + +   D    + +    P        
Sbjct: 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319

Query: 295 PSPSVLIPALR---TVGNIVTGDDMQTQCIINHQAL------------PCLLDLLTQNYK 339
            S   ++P L    T  N    DD     +     L              +L+ + QN  
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT 379

Query: 340 KS---IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396
                 ++ A     +I  G     +       +  ++NL+ +   ++K+  AW I    
Sbjct: 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIA 439

Query: 397 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 439
              +          G ++     L    P++ T C   + N++
Sbjct: 440 DSVAESIDPQQHLPGVVQACLIGLQ-DHPKVATNCSWTIINLV 481

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 35/150 (23%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +      +  D+   ++ + + AL+ +               A    +  LS+    +R 
Sbjct: 14  LVPRGSHM-ADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRG 60

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A W +GN              +   +  L +  E     +   A  +L           
Sbjct: 61  AAAWIIGN------------FQDERAVEPLIKLLEDDSGFVRSGAARSLEQI-------- 100

Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWAL 265
                    A+E+L  +        A   L
Sbjct: 101 --GGERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 34/142 (23%)

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
            +      ++     VR     AL              + + A  PLL     +    + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESL-SNEDWRIR 59

Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
             A W + NF          Q   A+  L +L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 278 AVIEAGVCPRLVELLRHPSPSV 299
            V  A     + +L    +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT 170
           +        +E L  ++  +++  AAW + N             D  AV   ++LL   +
Sbjct: 39  MGDEAFEPLLESL-SNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86

Query: 171 DDVREQAVWALGNVAGDS 188
             VR  A  +L  + G+ 
Sbjct: 87  GFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174
            V   I+ L  DD   ++  AA +L  I                     +L  + T   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 175 EQAVWALG 182
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 35/153 (22%)

Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
              L      +   +  V  D   ALS + D      +A         L+E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
              A   +GN    D+         +A+  L+ LL ++    ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLL-EDDSGFVRSGAARSLEQI--GG-- 102

Query: 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
                    +   +  L        +K A   +
Sbjct: 103 -------ERVRAAMEKLAETGTGFARKVAVNYL 128

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 35/229 (15%), Positives = 73/229 (31%), Gaps = 25/229 (10%)

Query: 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293
            L  + + AL  +  L   +D+     A  AL  +    +  ++ ++        +  L 
Sbjct: 26  SLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS 85

Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL---------------LDLLTQNY 338
             +  V I ALR +G +V    M ++  +  +A   L               +D+L++  
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 339 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398
                K     I+ +        +    AG    L  L  +A+          I +    
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKV---AGFCLFLNMLNSSADSGHLTLILDEIPSLLQN 200

Query: 399 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 447
            +       + +  +  L   L+ P    V + L  +  I+      + 
Sbjct: 201 DN-----EFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREG 244

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 49/337 (14%), Positives = 104/337 (30%), Gaps = 17/337 (5%)

Query: 17  KVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAM 76
           +VA+   E      D  +++     E +   +  E             L     ++L   
Sbjct: 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333

Query: 77  VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAA 136
                 DD N    A      L +      +  V+       FI+   ++   + +  A 
Sbjct: 334 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP------FIKEHIKNPDWRYRDAAV 387

Query: 137 WALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196
            A   I  G   +    +   A+P  + L+  P+  VR+ A W +G +        +  +
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL---LPEAAI 444

Query: 197 SNGALMPLLAQFNEH--AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND 254
           ++  L PLL    E   A+  +  N  W  S+      +   +            + S+ 
Sbjct: 445 NDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEA-ADVADDQEEPATYCLSSSF 503

Query: 255 DEVLTDACWALSYLSDGTNDKIQAVIEA-----GVCPRLVELLRHPSPSVLIPALRTVGN 309
           + ++              N+   +  E+         +        +  V++  L+ V  
Sbjct: 504 ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQ 563

Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
           + +     +  I  +     L   L    +K   ++A
Sbjct: 564 MESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	529
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.84
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.82
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.8
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.79
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.78
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.78
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.77
3grl_A	651	General vesicular transport factor P115; vesicle t	99.75
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.72
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.71
3grl_A	651	General vesicular transport factor P115; vesicle t	99.71
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.71
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.67
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.66
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.65
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.61
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.61
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.6
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.6
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.58
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.58
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.53
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.46
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.45
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.44
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.42
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.36
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.14
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.12
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.02
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.99
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.91
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.9
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.9
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.8
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.8
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.78
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.72
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.69
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.6
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.59
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.58
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.56
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.46
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.46
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.44
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.4
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.38
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.35
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.34
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.33
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.29
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.29
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.21
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.18
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.17
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.17
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.01
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.97
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.87
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.72
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.6
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.57
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.37
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.35
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.34
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.33
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.27
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.25
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.18
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.07
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.07
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.02
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.02
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.02
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.96
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.91
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.22
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.19
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.73
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.55
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.46
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.39
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.33
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.05
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.02
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.82
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.57
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.53
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.34
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.87
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.52
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	92.57
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	91.21
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	90.55
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	90.15
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.91
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	88.63
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	88.21
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	86.41
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	83.47
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	83.0
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	82.07
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	81.86
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.56
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	81.28
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	80.98
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	80.87
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	80.63

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=9.3e-77  Score=612.95  Aligned_cols=517  Identities=45%  Similarity=0.751  Sum_probs=403.9

Q ss_pred             CCCCCCC-ccHHHhhhccC-CCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCC--Cccch-hhhhhhhhccHHH
Q 009665            1 MSLRPNA-RTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--PLTNS-AALDNKKLESLPA   75 (529)
Q Consensus         1 ~~~~~~~-~~~~~~~~~k~-~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~--~~~~~-~~~~~~~~~~l~~   75 (529)
                      |+.+++. .++.|+++||+ |+|++|+||||+++.++|||+||++++.|||+.....+.  .+... ..........++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            7888876 56899999998 899999999999999999999999999999976433222  11111 1111112246899


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009665           76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID  155 (529)
Q Consensus        76 l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  155 (529)
                      +++.++|+|++.|..|+..++++++.+++++++.+++.|++|.|+++|...+++.++..|+|+|+||+.++++.+..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999888999999999999999999987666999999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch----hHHHHHHHHHHHhhhhcCC
Q 009665          156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~  231 (529)
                      .|++|.|+.+|.+++.++++.|+|+|+||+.+++.+|+.+.+.|++++|+.++....    ...+.+.++|++++++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999995322    3467899999999999987


Q ss_pred             -CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          232 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       232 -~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                       +........+++|.|+.++.+++++++..++|+|++++....+....+++.|+++.|+.+|.++++.++.+++++|+|+
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             5666677789999999999999999999999999999999888888899999999999999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHH
Q 009665          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  390 (529)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~  390 (529)
                      +.+++.....+++.|+++.|..+|.++ ++.++++|+|+|+|++.+++.+...+++.|++|.|+.++.+++++++++|+|
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence            999999999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHH
Q 009665          391 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI  470 (529)
Q Consensus       391 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l  470 (529)
                      +|+|++.+++++++.+|++.|+++.|+++|.++|++++..++++|.+|+..+++..      ..+.+..+|+++||+++|
T Consensus       400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~i  473 (529)
T 3tpo_A          400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKI  473 (529)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCCcHHHH
Confidence            99999998899999999999999999999999999999999999999999887543      357789999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhhCCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 009665          471 ENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF  528 (529)
Q Consensus       471 ~~L~~~~~~~v~~~a~~il~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (529)
                      +.||+|+|.+||++|..||++||+.|++|++  .|+.+  .++|.|+.++  .++|+|||
T Consensus       474 e~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~f~f  529 (529)
T 3tpo_A          474 EALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT--SEGFAFQVQD--GAPGTFNF  529 (529)
T ss_dssp             TGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCC--CcccccCCCC--CCCCCCCC
Confidence            9999999999999999999999998766555  45544  3479998665  36789999

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.2e-65  Score=526.92  Aligned_cols=488  Identities=44%  Similarity=0.754  Sum_probs=393.7

Q ss_pred             HHHHHHHHHHhhHHHHHhhhhhcccCCCCc-cchhhhhhhhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhh
Q 009665           30 EDNMVEIRKNKREESLLKKRREGLQAHQPL-TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN  108 (529)
Q Consensus        30 ~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~  108 (529)
                      ....++.|+.+++......++....++... ..........-..++.+++.++|+|++.|+.|+..+|+++|.++++|++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~   94 (510)
T 3ul1_B           15 GSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID   94 (510)
T ss_dssp             --------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             CcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH
Confidence            334556676666666666665443322211 1011111111136899999999999999999999999999999899999


Q ss_pred             HHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009665          109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS  188 (529)
Q Consensus       109 ~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  188 (529)
                      .+++.|++|.|+++|++.+++.+|.+|+|+|+||+.++++.+..+++.|++|.|+.+|.+++.+++++|+|+|+||+.++
T Consensus        95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~  174 (510)
T 3ul1_B           95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG  174 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            99999999999999987666899999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhcCChHHHHHHhccch----hHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHH
Q 009665          189 PKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACW  263 (529)
Q Consensus       189 ~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~  263 (529)
                      +.+|+.+.+.|++++++.++....    ...+.+.++|++++++.+. +........+++|.|+.++.+++++++..++|
T Consensus       175 ~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~  254 (510)
T 3ul1_B          175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW  254 (510)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999995322    3467889999999999987 55666677899999999999999999999999


Q ss_pred             HHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHH
Q 009665          264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK  343 (529)
Q Consensus       264 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  343 (529)
                      +|++|+....+....+.+.|+++.|+.+|.+++..++..++++|+|++.+++..+..+++.|+++.|..+|.++ +..++
T Consensus       255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~  333 (510)
T 3ul1_B          255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQ  333 (510)
T ss_dssp             HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHH
T ss_pred             HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHH
Confidence            99999999888888899999999999999999999999999999999999999999999999999999999998 89999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC
Q 009665          344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  423 (529)
Q Consensus       344 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~  423 (529)
                      +.|+|+|+|++.++++++..+++.|++|.|+.++.+++++++++|+|+|+|++.+++.+++.+|++.|+++.|+++|+++
T Consensus       334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~  413 (510)
T 3ul1_B          334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK  413 (510)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999998999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCCCCC--
Q 009665          424 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP--  501 (529)
Q Consensus       424 ~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~~--  501 (529)
                      |++++..++++|.+|+..+++..      ..+.|..+|+++||+++|+.||+|+|++||++|..||++||+.|++|++  
T Consensus       414 d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~  487 (510)
T 3ul1_B          414 DTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNV  487 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---------
T ss_pred             CHHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence            99999999999999999887543      3577899999999999999999999999999999999999998776655  


Q ss_pred             CCCCCCCCCccccCCCCCCCCCCCCcC
Q 009665          502 LPPGDATQAGFGFAGNGLPVPSGGFNF  528 (529)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (529)
                      .|+.+  .++|.|+.++  .++|+|||
T Consensus       488 ~~~~~--~~~~~~~~~~--~~~~~~~~  510 (510)
T 3ul1_B          488 VPETT--SEGFAFQVQD--GAPGTFNF  510 (510)
T ss_dssp             ---------------------------
T ss_pred             CCCCC--ccccccCCCC--CCCCCCCC
Confidence            45443  3479998765  36789999

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1e-64  Score=525.11  Aligned_cols=500  Identities=84%  Similarity=1.293  Sum_probs=403.0

Q ss_pred             CCCCCCCccHHHhhhccCCCCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCCCcc-chhhhhhhhhccHHHHHHh
Q 009665            1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT-NSAALDNKKLESLPAMVAG   79 (529)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~   79 (529)
                      |++++++++++|++.||++++++|+|+||+++.++|||+||++++.|||+.....+..++ ............+|.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~   82 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGG   82 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC----------------------CHHHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHH
Confidence            788888899999999999999999999999999999999999999999987432221110 0011111234579999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009665           80 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  159 (529)
Q Consensus        80 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  159 (529)
                      |.++++.++..|++.|+++++....++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|++
T Consensus        83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i  162 (528)
T 4b8j_A           83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (528)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence            99999999999999999999877557888999999999999999987658999999999999999889999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhh
Q 009665          160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  239 (529)
Q Consensus       160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  239 (529)
                      +.|+.+|.+++..+++.|+|+|++|+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+.......
T Consensus       163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~  242 (528)
T 4b8j_A          163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT  242 (528)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence            99999999999999999999999999998889999999999999999997677899999999999999998777777778


Q ss_pred             hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHH
Q 009665          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  319 (529)
Q Consensus       240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~  319 (529)
                      .+++|.|+.++.++++.++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|++++.+++...+
T Consensus       243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  322 (528)
T 4b8j_A          243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ  322 (528)
T ss_dssp             TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999998888888899999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      .+++.|+++.|+.+|.++.++.+++.|+|+|+|++.++++.+..+++.|++|.|+.+|.+++++++..|+|+|+|++..+
T Consensus       323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~  402 (528)
T 4b8j_A          323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG  402 (528)
T ss_dssp             HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999987657899999999999999988999999999999999999999999999999999999999987


Q ss_pred             CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCH
Q 009665          400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT  479 (529)
Q Consensus       400 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~  479 (529)
                      +++...++++.|+++.|+.+|..++++++..++++|.+++..++....... ...++|...+++.||+++|..|++|+++
T Consensus       403 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~L~~~~~~  481 (528)
T 4b8j_A          403 SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLEKIENLQSHDNN  481 (528)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHHHHHHHHcCCCH
Confidence            889999999999999999999999999999999999999988876432111 1356799999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCCC
Q 009665          480 EIYEKAVKILETYWVEEDEDEP  501 (529)
Q Consensus       480 ~v~~~a~~il~~~~~~~~~~~~  501 (529)
                      +++++|..++++||+.|++++.
T Consensus       482 ~v~~~a~~il~~~~~~e~~~~~  503 (528)
T 4b8j_A          482 EIYEKAVKILEAYWMDEEDDTM  503 (528)
T ss_dssp             HHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHHHHCCCcccccc
Confidence            9999999999999998776543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.5e-59  Score=486.26  Aligned_cols=492  Identities=54%  Similarity=0.827  Sum_probs=424.6

Q ss_pred             CCCccHHHhhhccC-C-CCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhccc---CCC-Cccc-----hhhhhhhhhccH
Q 009665            5 PNARTEVRRSKYKV-A-VDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ---AHQ-PLTN-----SAALDNKKLESL   73 (529)
Q Consensus         5 ~~~~~~~~~~~~k~-~-~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~---~~~-~~~~-----~~~~~~~~~~~l   73 (529)
                      ...+++.|++.||+ + +|++|+||||++..+++||+||++++.|||+....   .+. ++..     .........+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   89 (530)
T 1wa5_B           10 SKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQEL   89 (530)
T ss_dssp             --CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCH
T ss_pred             CCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHH
Confidence            33467889999999 8 89999999999999999999999999999987542   111 1100     000000123579


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  153 (529)
                      +.++..|+++++..+..|+..|+++++....++...++..|++|.|+.+|.+++++.++..|+|+|++++.++++.+..+
T Consensus        90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~  169 (530)
T 1wa5_B           90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV  169 (530)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999999876567778889999999999999997339999999999999999888999999


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-C
Q 009665          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P  232 (529)
Q Consensus       154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~  232 (529)
                      ++.|+++.|+.+|.+++..+++.|+|+|++++.+.+..+..+...|+++.|+.++ .+.+..++..++|+|++|+.+. +
T Consensus       170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999888999999999999999999 5578899999999999999987 6


Q ss_pred             CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009665          233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (529)
Q Consensus       233 ~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~  312 (529)
                      ........+++|.|+.++.++++.++..++|+|++++...+.....+++.|+++.|+.+|.++++.++..|+++|++++.
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence            66677778999999999999999999999999999998887777888899999999999999999999999999999999


Q ss_pred             CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHH
Q 009665          313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  392 (529)
Q Consensus       313 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL  392 (529)
                      +++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++.++.+++.++++.|+.+|.+++++++..|+|+|
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL  407 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI  407 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9888888889999999999999998 899999999999999998899999999999999999999999999999999999


Q ss_pred             HHHhcCCCH--HHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHH
Q 009665          393 SNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI  470 (529)
Q Consensus       393 ~nl~~~~~~--~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l  470 (529)
                      ++++..+++  +...++++.|+++.|+.++.+.++.++..++++|.+++..++..... .....++|+..|.+.||+++|
T Consensus       408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~L  486 (530)
T 1wa5_B          408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGMEKI  486 (530)
T ss_dssp             HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCHHHHHHHHTTHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHHHHHHHHcCcHHHH
Confidence            999987766  78899999999999999999999999999999999999887653210 001246789999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhhCCCCCCC
Q 009665          471 ENLQSHDNTEIYEKAVKILETYWVEEDED  499 (529)
Q Consensus       471 ~~L~~~~~~~v~~~a~~il~~~~~~~~~~  499 (529)
                      ..|++|++++|+++|..+|++||..+++|
T Consensus       487 ~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          487 FNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            99999999999999999999999987664

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.7e-47  Score=386.91  Aligned_cols=426  Identities=61%  Similarity=0.955  Sum_probs=385.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhc-CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~-g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      .++.+++.|+++++.++..|+..|+++++...+++.+.++.. |++|.|+++|.+++++.++..|+++|.+++.++++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            378999999999999999999999999875445667778887 9999999999998339999999999999999888888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ..+++.|++|.|+.+|.++++.+++.|+|+|++++.+.+..+..+.+.|+++.++.++..+.+..++..++|+|.+++..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            88899999999999999999999999999999999998888999999999999999995457899999999999999987


Q ss_pred             C-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          231 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       231 ~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      . +........+++|.|+.++.++++.++..++|+|.+++....+....+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            6 555555668999999999999999999999999999998877777888889999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHH
Q 009665          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  389 (529)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~  389 (529)
                      ++.+.+...+.+++.|+++.|+.+|.++ ++.+|..|+|+|+|++.++++..+.+++.++++.|+.++.++++++|..|+
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~  339 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA  339 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9999888888888999999999999998 899999999999999998899999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHH
Q 009665          390 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  469 (529)
Q Consensus       390 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~  469 (529)
                      |+|++++..++++...++++.|+++.|+.++++++++++..++++|.+++..++.....+ ....++|...|.+.||+++
T Consensus       340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~  418 (450)
T 2jdq_A          340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN-GTGINPYCALIEEAYGLDK  418 (450)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS-CSCCCHHHHHHHHHHCHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc-ccchhHHHHHHHHcCcHHH
Confidence            999999987778888989999999999999999999999999999999998776542210 1134679999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhhCCCCCCC
Q 009665          470 IENLQSHDNTEIYEKAVKILETYWVEEDED  499 (529)
Q Consensus       470 l~~L~~~~~~~v~~~a~~il~~~~~~~~~~  499 (529)
                      |..|++|++.++++.|..+|++||+.|+++
T Consensus       419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          419 IEFLQSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            999999999999999999999999877654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.6e-40  Score=326.73  Aligned_cols=367  Identities=19%  Similarity=0.198  Sum_probs=295.5

Q ss_pred             hhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChh-hHHhhcCChHHHHHhhcCCCC-----------hHHHHHH
Q 009665           68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDF-----------PQLQFEA  135 (529)
Q Consensus        68 ~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~-~~~i~~g~i~~Li~lL~~~~~-----------~~v~~~a  135 (529)
                      .+++.++.++..+.+.|+..      .++++++.+.+++. ..+++.|++|.|+++|+..+.           ++++.+|
T Consensus        29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a  102 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA  102 (458)
T ss_dssp             ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence            45677899999999888873      34444444344454 778999999999999997432           6999999


Q ss_pred             HHHHHHHhcCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchh
Q 009665          136 AWALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSPT--DD-----VRE-------QAVWALGNVAGDSPKC  191 (529)
Q Consensus       136 ~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~  191 (529)
                      +|+|+||+.+.++......+.|++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +++
T Consensus       103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~  181 (458)
T 3nmz_A          103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH  181 (458)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence            999999999999999998888888          67777777642  22     555       999999999876 779


Q ss_pred             HHHHHhcCChHHHHHHhcc----------chhHHHHHHHHHHHhhhhcCCCCCchhh--hhchHHHHHHhhccCChHHHH
Q 009665          192 RDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLT  259 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~~d~~v~~  259 (529)
                      |+.+.+.|++++|+.+|..          ..++.+++.++|+|.||+.+.+......  ..+++|.|+.+|.+++++++.
T Consensus       182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~  261 (458)
T 3nmz_A          182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ  261 (458)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence            9999999999999999942          2467899999999999999864233222  457799999999999999999


Q ss_pred             HHHHHHHHhccC-CchhHHHHHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHHhcc
Q 009665          260 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQ  336 (529)
Q Consensus       260 ~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~  336 (529)
                      .++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.++.++..|+.+|+|++.+++.....+. ..|+++.|+.+|.+
T Consensus       262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~  341 (458)
T 3nmz_A          262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  341 (458)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999985 456667888999999999975 557788999999999999985655555555 78999999999987


Q ss_pred             CCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009665          337 NYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ  410 (529)
Q Consensus       337 ~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  410 (529)
                      ..+.   .+++.|+|+|.|++.   +++++++.+++.|+++.|+.+|.+++..++++|+|+|.|++.. ++++...+++.
T Consensus       342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~  420 (458)
T 3nmz_A          342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDM  420 (458)
T ss_dssp             CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence            7222   499999999999997   7799999999999999999999999999999999999999975 67889999999


Q ss_pred             CChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          411 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       411 ~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      |+++.|+++|.++++.++..++++|.+|+...
T Consensus       421 G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          421 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             THHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999998654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1e-39  Score=340.90  Aligned_cols=364  Identities=16%  Similarity=0.151  Sum_probs=316.5

Q ss_pred             cHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCChhhHHh-hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        72 ~l~~l~~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~~i-~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      .++.+++.|.++  +++++..|++.|..+...  .+....++ +.|++|.|+.+|++++ +.+++.|+|+|+||+.++++
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence            367788888887  899999999999998542  23344444 6899999999999988 89999999999999985421


Q ss_pred             -----------------------------h---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009665          149 -----------------------------N---TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL  196 (529)
Q Consensus       149 -----------------------------~---~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  196 (529)
                                                   .   .+.+++.|++|.|+.++.++++.++++|+|+|+||+.+ +.+|..+.
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv  533 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVV  533 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence                                         1   26788999999999999999999999999999999976 45899999


Q ss_pred             hcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCch--hhhhchHHHHHHhhccC-ChHHHHHHHHHHHHhccCC
Q 009665          197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF--EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT  272 (529)
Q Consensus       197 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~ll~~~-d~~v~~~a~~~L~~l~~~~  272 (529)
                      +.|++++|+.+| .+.+...++.|+|+|++|+... +...+  ....+++|.|+.+|.++ +...+..++|+|.||+..+
T Consensus       534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~  612 (810)
T 3now_A          534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN  612 (810)
T ss_dssp             HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence            999999999999 6667788999999999999764 22111  12356899999999865 3345678999999999998


Q ss_pred             chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                      ++....+++.|+++.|+.+|.++++.++..|+++|+|++.+.+.... +++ .|.++.|+.++.++ +..++++|+|+|+
T Consensus       613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa  690 (810)
T 3now_A          613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALA  690 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence            77788899999999999999999999999999999999997665444 444 78999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC---CHHH
Q 009665          352 NITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP---DPRI  427 (529)
Q Consensus       352 nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~---~~~v  427 (529)
                      |++.+++.+++.+++ .|+++.|+.++.+++.+++..|+|+|.|++.+ ++++..++++.|+++.|+.+++..   ++++
T Consensus       691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i  769 (810)
T 3now_A          691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKA  769 (810)
T ss_dssp             HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHH
T ss_pred             HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHH
Confidence            999987999999998 89999999999999999999999999999985 578899999999999999999765   6899


Q ss_pred             HHHHHHHHHHHHHhhh
Q 009665          428 VTVCLEGLENILKAGE  443 (529)
Q Consensus       428 ~~~~l~aL~~l~~~~~  443 (529)
                      +..++++|.+++..+.
T Consensus       770 ~e~Al~aL~~ll~~g~  785 (810)
T 3now_A          770 REVATQCLAAAERYRI  785 (810)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999998875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=5.4e-39  Score=324.09  Aligned_cols=365  Identities=18%  Similarity=0.208  Sum_probs=309.3

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  194 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  194 (529)
                      .+|.|+.+|.+++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|.++++.++..|+|+|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999998 999999999999999877788889999999999999999999999999999999999988889999


Q ss_pred             HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc--------c--------CChHHH
Q 009665          195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL  258 (529)
Q Consensus       195 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~--------~--------~d~~v~  258 (529)
                      +.+.|++++|+.+|..+.++.++..++|+|+||+........... +++|.|+.++.        +        .++.+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995477899999999999999998433333444 99999999993        2        356778


Q ss_pred             HHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHhcCC------CCcchHHHHHHHHHHhhcC------------------
Q 009665          259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG------------------  313 (529)
Q Consensus       259 ~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~al~~L~~l~~~------------------  313 (529)
                      ..++|+|++|+.. ++....+.+. |+++.|+.+|.+      .+..+...|+.+|.+++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 6677778887 999999999975      4567888899999998631                  


Q ss_pred             --------------------------------ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH--
Q 009665          314 --------------------------------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--  359 (529)
Q Consensus       314 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  359 (529)
                                                      .+...+.+++.++++.++.+|.++.++.+++.|+|+|+|+++++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1123334556778899999998775789999999999999986433  


Q ss_pred             -HH-HHHH-HcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCH------HHHHH
Q 009665          360 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP------RIVTV  430 (529)
Q Consensus       360 -~~-~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~------~v~~~  430 (529)
                       .+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++.+   .....++..++++.|+++|...++      +++..
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 4445 689999999999999999999999999999984   234556677899999999998653      68889


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhhCCCCC
Q 009665          431 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWVEED  497 (529)
Q Consensus       431 ~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~  497 (529)
                      ++++|.+++..+.            .+...+.+.||++.|.+|+.|+ ++++|+.|.++|.+||...+
T Consensus       397 ~l~~l~ni~~~~~------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQP------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCT------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCH------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            9999999986543            2578888999999999999999 99999999999999997543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=2.8e-38  Score=325.76  Aligned_cols=370  Identities=26%  Similarity=0.408  Sum_probs=327.2

Q ss_pred             hhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009665           69 KLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  147 (529)
Q Consensus        69 ~~~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~  147 (529)
                      +.|.+|.|++.|. ++++.+|..|+++|.++++.. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.+++
T Consensus       117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~  194 (529)
T 3tpo_A          117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGS  194 (529)
T ss_dssp             HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCH
Confidence            4478999999997 566899999999999998764 455678899999999999999999 9999999999999999889


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHH
Q 009665          148 ENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW  222 (529)
Q Consensus       148 ~~~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  222 (529)
                      +.+..+++.|+++.|+.+|..++     ..+...++|++++++.............++++.|+.++ .+.++.++..++|
T Consensus       195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~  273 (529)
T 3tpo_A          195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCW  273 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHH
Confidence            99999999999999999998643     46788999999999977654445555567899999999 7788999999999


Q ss_pred             HHhhhhcCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHH
Q 009665          223 TLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI  301 (529)
Q Consensus       223 ~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~  301 (529)
                      +|++++.+.+. .......+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++.
T Consensus       274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~  353 (529)
T 3tpo_A          274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK  353 (529)
T ss_dssp             HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHH
T ss_pred             HHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHH
Confidence            99999987632 23344578999999999999999999999999999998888888899999999999999999999999


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcC
Q 009665          302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA  380 (529)
Q Consensus       302 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~  380 (529)
                      .|+++|+|++.++..+...+++.|+++.|+.+|.++ +.+++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.
T Consensus       354 ~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~  432 (529)
T 3tpo_A          354 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK  432 (529)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred             HHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC
Confidence            999999999999999999999999999999999998 99999999999999997 5788899999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHhcC----CC-HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          381 EFEIKKEAAWAISNATSG----GS-NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       381 ~~~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      |++++..++++|.|+...    +. ......+.+.|+++.|..|..+++.+|...+...|.+++...
T Consensus       433 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  499 (529)
T 3tpo_A          433 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  499 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            999999999999999742    22 334456678899999999999999999999999999887543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.2e-38  Score=323.42  Aligned_cols=370  Identities=26%  Similarity=0.407  Sum_probs=326.8

Q ss_pred             hhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh
Q 009665           69 KLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  147 (529)
Q Consensus        69 ~~~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~  147 (529)
                      +-|.+|.|++.|+ ++++.+|..|+++|.++++.. ....+.+++.|++|.|+.+|.+++ ++++..|+|+|+||+.+++
T Consensus        98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~  175 (510)
T 3ul1_B           98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGS  175 (510)
T ss_dssp             HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCH
Confidence            3478999999997 556899999999999998764 566778899999999999999998 9999999999999999889


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHH
Q 009665          148 ENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW  222 (529)
Q Consensus       148 ~~~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  222 (529)
                      +.+..+++.|+++.|+.++.+++     ..+...++|++++++.............++++.|+.++ .+.++.++..++|
T Consensus       176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~  254 (510)
T 3ul1_B          176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCW  254 (510)
T ss_dssp             HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHH
Confidence            99999999999999999998743     46788999999999976654445555567899999999 7788899999999


Q ss_pred             HHhhhhcCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHH
Q 009665          223 TLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI  301 (529)
Q Consensus       223 ~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~  301 (529)
                      +|++|+...+. .......+++|.|+.++.+.+..++..++++|++++..++.....+++.|+++.|+.+|.++++.++.
T Consensus       255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~  334 (510)
T 3ul1_B          255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK  334 (510)
T ss_dssp             HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHH
T ss_pred             HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHH
Confidence            99999987632 23334578999999999999999999999999999998888888899999999999999999999999


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcC
Q 009665          302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA  380 (529)
Q Consensus       302 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~  380 (529)
                      .|+++|+|++.++..+...+++.|+++.|+.++.++ +.+++++|+|+|+|++. ++++++..+++.|+++.|+++|.+.
T Consensus       335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~  413 (510)
T 3ul1_B          335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK  413 (510)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred             HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence            999999999999999999999999999999999998 99999999999999998 5788899999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHhcCC-----CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          381 EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       381 ~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      +++++..++++|.|++..+     .......+.+.|+++.|..|..+++.++...+...|.+++...
T Consensus       414 d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          414 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            9999999999999997521     2334556678899999999999999999999999999887543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=3.2e-37  Score=319.43  Aligned_cols=404  Identities=19%  Similarity=0.216  Sum_probs=341.9

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      +.+.+|.+++.|+++++.++..|+.+|.++.... ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++
T Consensus        99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~  176 (529)
T 1jdh_A           99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQE  176 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHH
Confidence            3478999999999999999999999999998754 445667778999999999999988 99999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665          149 NTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  227 (529)
                      .+..+.+.|+++.|+.++.+. ....+..++.+|.+++.. +..+..+.+.|+++.++.++ .+.++.++..++|+|.++
T Consensus       177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l  254 (529)
T 1jdh_A          177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHH
Confidence            999999999999999999874 566778889999999965 45788899999999999999 566889999999999999


Q ss_pred             hcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHH
Q 009665          228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALR  305 (529)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~  305 (529)
                      +...+..  ....+++|.|++++.+++++++..++|+|++++....+....+.+.|+++.|+.+|.+  .++.++..|++
T Consensus       255 ~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~  332 (529)
T 1jdh_A          255 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence            9886332  2346899999999999999999999999999999877788889999999999999975  34789999999


Q ss_pred             HHHHhhcCChh---hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCCh
Q 009665          306 TVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF  382 (529)
Q Consensus       306 ~L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~  382 (529)
                      +|+|++.+++.   ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.++. ....+++.|++|.|+.++.++++
T Consensus       333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~  411 (529)
T 1jdh_A          333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQ  411 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhH
Confidence            99999886543   355678899999999999988346999999999999999744 45788899999999999998888


Q ss_pred             hHHHHHHHHHHH--HhcCC------------------CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          383 EIKKEAAWAISN--ATSGG------------------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       383 ~v~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      ++|++|+|+++|  +..++                  +++....+.+.|+++.|+.++.++++.++..+.++|.++....
T Consensus       412 ~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~  491 (529)
T 1jdh_A          412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  491 (529)
T ss_dssp             HHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH
Confidence            999988887777  22221                  3455567889999999999999999999999999999986331


Q ss_pred             hhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665          443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  492 (529)
                                   ++...+.+.|+++.|..|+.|++++|+..|.++|.++
T Consensus       492 -------------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          492 -------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             -------------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             -------------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                         2578889999999999999999999999999999865

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.2e-37  Score=325.38  Aligned_cols=405  Identities=17%  Similarity=0.131  Sum_probs=335.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCC-CChhhHHhh---cCChHHHHHhhcCC--CChHHHHHHHHHHHHHhcCC
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQ---SGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASGT  146 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~-~~~~~~~i~---~g~i~~Li~lL~~~--~~~~v~~~a~~~L~~l~~~~  146 (529)
                      +|.|+..+++++..++..|+.+|+++.+... ++....+-+   ..+++.|+++|.++  + ++++..|+|+|.+++. .
T Consensus       332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~  409 (810)
T 3now_A          332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-D  409 (810)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-S
T ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-C
Confidence            5888888888888889999999999875432 222222222   13477889999887  5 8999999999999999 5


Q ss_pred             hhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-----------------------------hhH---H
Q 009665          147 SENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-----------------------------KCR---D  193 (529)
Q Consensus       147 ~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----------------------------~~~---~  193 (529)
                      ++.+..++ +.|++|.|+.+|.+++..++..|+|+|+||+.+.+                             ..+   +
T Consensus       410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~  489 (810)
T 3now_A          410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT  489 (810)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence            66666665 57999999999999999999999999999997542                             122   5


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~  273 (529)
                      .+++.|+++.|+.++ .++++.++..++|+|.|++...+........|++|.|+.+|.++++.++..++|+|++++...+
T Consensus       490 ~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~  568 (810)
T 3now_A          490 VLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN  568 (810)
T ss_dssp             HHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence            778999999999999 7788999999999999999765544555568999999999999999999999999999986533


Q ss_pred             hhHHH--HHHhCcHHHHHHhcCCCCc-chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665          274 DKIQA--VIEAGVCPRLVELLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (529)
Q Consensus       274 ~~~~~--~~~~~~~~~L~~lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  350 (529)
                      .....  ....++++.|+.+|.++.. ..+..|+++|+|++.+++.....+++.|+++.|..+|.++ ++.+++.|+|+|
T Consensus       569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L  647 (810)
T 3now_A          569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL  647 (810)
T ss_dssp             HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred             hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            22110  0113689999999986544 3356899999999999888888899999999999999998 899999999999


Q ss_pred             HHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHhccCCCCHHHH
Q 009665          351 SNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIV  428 (529)
Q Consensus       351 ~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~v~  428 (529)
                      +|++.+ ++....+++ .|.++.|+.++.+++..++++|+|+|+|++.+ ++..++.+++ .|+++.|+.+|.+++.+++
T Consensus       648 ~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq  725 (810)
T 3now_A          648 CNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQ  725 (810)
T ss_dssp             HHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred             HHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence            999997 555566664 68999999999999999999999999999985 5678888888 8999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC---CCHHHHHHHHHHHHhhCCC
Q 009665          429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH---DNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~---~~~~v~~~a~~il~~~~~~  495 (529)
                      ..++++|.|+...+..            ....+.+.|+++.|..|...   .+.++++.|...|+.....
T Consensus       726 ~~A~~aL~NL~~~s~e------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~  783 (810)
T 3now_A          726 HRGIVIILNMINAGEE------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY  783 (810)
T ss_dssp             HHHHHHHHHHHTTCHH------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHH------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence            9999999999874321            37788899999999999644   4799999999999887653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.7e-37  Score=322.26  Aligned_cols=406  Identities=19%  Similarity=0.234  Sum_probs=346.1

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        70 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      .+.++.+++.|+++++.++..|+.+|.++++.. ......+++.|++|.|+++|.+++ +.++..++.+|.+++.++++.
T Consensus        97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~  174 (644)
T 2z6h_A           97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  174 (644)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHH
Confidence            478999999999999999999999999998764 455667778999999999999988 889999999999999888999


Q ss_pred             HHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          150 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      +..+.+.|+++.|+.++.+. ...++..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+++
T Consensus       175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~  252 (644)
T 2z6h_A          175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  252 (644)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999884 477889999999999964 45789999999999999999 5668899999999999999


Q ss_pred             cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC--CcchHHHHHHH
Q 009665          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT  306 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~al~~  306 (529)
                      ...+..  ....+++|.|+.++.+.+++++..++|+|++|+.........+++.|+++.|+.+|.+.  .+.++..|+++
T Consensus       253 ~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          253 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             GGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence            876332  33468999999999999999999999999999998777778899999999999999763  36899999999


Q ss_pred             HHHhhcCChh---hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009665          307 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (529)
Q Consensus       307 L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~  383 (529)
                      |++++.....   ....+++.++++.|+.+|.++.++.+++.|+|+|+|++.+... ...+++.|+++.|+.++.+++++
T Consensus       331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~  409 (644)
T 2z6h_A          331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQD  409 (644)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchh
Confidence            9999975432   2334778899999999999874479999999999999997444 47888999999999999886555


Q ss_pred             HHH----------------------HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          384 IKK----------------------EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       384 v~~----------------------~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      +|+                      .++.+|.+++.  ++.....+.+.|+++.|+.+|.+.++.++..++++|.++...
T Consensus       410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             HTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            554                      45555555554  335556788999999999999999999999999999998743


Q ss_pred             hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHH------------------HHH--HHHHHHhhCCCCC
Q 009665          442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI------------------YEK--AVKILETYWVEED  497 (529)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v------------------~~~--a~~il~~~~~~~~  497 (529)
                      .             .++..|.+.|+++.|..++.+++++|                  |..  +..++..||..+.
T Consensus       488 ~-------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~  550 (644)
T 2z6h_A          488 K-------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  550 (644)
T ss_dssp             H-------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred             H-------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence            2             25788999999999999999999999                  444  6778899997663

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=3.3e-37  Score=311.12  Aligned_cols=362  Identities=16%  Similarity=0.187  Sum_probs=303.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+|.++..|+++++.+|..|+.+|++++... .+....+++.|++|.|+++|.+++ +.++..|+|+|.||+.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999999999999999999987532 333558889999999999999988 99999999999999997799999


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------c-------hhHH
Q 009665          152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS  215 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~  215 (529)
                      .+++.|++|.|+++|. +++.++++.++|+|+||+.+ +..+..+.+ |++++|+.++..        .       .++.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 78999999999999999988 568888888 999999999931        1       2567


Q ss_pred             HHHHHHHHHhhhhcCCCCCchhhh-h-chHHHHHHhhcc------CChHHHHHHHHHHHHhccCC---------------
Q 009665          216 MLRNATWTLSNFCRGKPQPLFEQT-R-PALPALERLIHS------NDDEVLTDACWALSYLSDGT---------------  272 (529)
Q Consensus       216 ~~~~a~~~L~~l~~~~~~~~~~~~-~-~~l~~L~~ll~~------~d~~v~~~a~~~L~~l~~~~---------------  272 (529)
                      +++.++|+|+||+.. +....... . +++|.|+.++.+      .+..+...++++|.+++...               
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            888999999999987 33222222 3 899999999985      46678889999999886310               


Q ss_pred             -----------------------------------chhHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCChh
Q 009665          273 -----------------------------------NDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM  316 (529)
Q Consensus       273 -----------------------------------~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~  316 (529)
                                                         +...+.+++.|+++.++.+|.+ .++.++..|+++|+|++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               1122345566788999999965 4678999999999999987654


Q ss_pred             hH----HHHH-hcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCCh------hHH
Q 009665          317 QT----QCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF------EIK  385 (529)
Q Consensus       317 ~~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~------~v~  385 (529)
                      ..    +.++ +.|++|.|+.+|.++ +.+++++|+|+|+|++.+ + ..+.++..++++.|+++|..+++      ++.
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~  394 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence            32    3344 689999999999999 999999999999999986 3 34566777899999999998743      688


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhh
Q 009665          386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~  442 (529)
                      ..++++|.|+..+. ++....+.+.|+++.|++++.++ +.+++..+.++|.+++...
T Consensus       395 ~~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          395 SSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            89999999999764 57888888999999999999999 8999999999999887543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=3e-36  Score=305.61  Aligned_cols=367  Identities=25%  Similarity=0.340  Sum_probs=323.7

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        71 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      +.++.+++.|+++ ++.++..|+++|.++.+.. ......+++.|++|.|+++|.+++ +.++..|+++|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            5789999999988 8999999999999998753 345566778999999999999988 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665          150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  227 (529)
                      +..+++.|+++.|+.++.+ .+..++..++|+|++++... +..+... ..++++.|+.++ .+.++.++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999996 78999999999999999765 3322222 368899999999 667889999999999999


Q ss_pred             hcCCC-CCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009665          228 CRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (529)
Q Consensus       228 ~~~~~-~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~  306 (529)
                      +...+ ........+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            98752 22233446899999999999999999999999999999887777778888999999999999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHH
Q 009665          307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (529)
Q Consensus       307 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~  385 (529)
                      |++++.+++...+.+++.++++.|+.+|.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888899999999999998 899999999999999984 68888889999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          386 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       386 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      ..|+++|.+++..+..          .....+.+.|+++.|..++.+++.+++..++.+|.+++...
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            9999999999975432          23567778899999999999999999999999999998543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.2e-35  Score=307.26  Aligned_cols=369  Identities=25%  Similarity=0.353  Sum_probs=326.7

Q ss_pred             hccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           70 LESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        70 ~~~l~~l~~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      .+.+|.+++.|.++ ++.++..|+++|.++++.. ......++..|++|.|+.+|.+++ +.++..|+|+|++++..+++
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~  206 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD  206 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCcc
Confidence            46899999999987 8999999999999998653 345667788999999999999888 99999999999999998888


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      .+..++..|+++.|+.++.+.+..++..++|+|++++.............++++.|+.++ .+.++.++..++|+|.+|+
T Consensus       207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~  285 (530)
T 1wa5_B          207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS  285 (530)
T ss_dssp             HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999976522234555678999999999 6678899999999999999


Q ss_pred             cCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665          229 RGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (529)
Q Consensus       229 ~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L  307 (529)
                      ...+. .......+++|.|+.++.+.++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|
T Consensus       286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL  365 (530)
T 1wa5_B          286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI  365 (530)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            87532 22233358999999999999999999999999999988877778888999999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CH--HHHHHHHHcCCHHHHHHHHhcCChhH
Q 009665          308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NV--NQIQAIIEAGIIGPLVNLLLNAEFEI  384 (529)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~l~~L~~~l~~~~~~v  384 (529)
                      ++++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.+ ++  +....+++.|+++.|+.++.++++.+
T Consensus       366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  444 (530)
T 1wa5_B          366 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI  444 (530)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence            999998888888888999999999999988 899999999999999984 45  78888999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCH----------HHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          385 KKEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      +..|+++|.+++..+..          .....+.+.|+++.|..++.+++++++..+.++|.+++...
T Consensus       445 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          445 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            99999999999875322          24567888999999999999999999999999999888654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.1e-35  Score=304.13  Aligned_cols=365  Identities=25%  Similarity=0.360  Sum_probs=324.1

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchh
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKC  191 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~  191 (529)
                      ..+|.|+..|.+++ ++++..|+++|.+++.... .....++..|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus        74 ~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           74 ESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             -CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            46899999999988 9999999999999977554 67788899999999999999876 999999999999999988888


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCC-CchhhhhchHHHHHHhh-ccCChHHHHHHHHHHHHhc
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLS  269 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L~~l~  269 (529)
                      +..+...|+++.|+.+| .+.++.++..++|+|.+++...+. .......++++.|+.++ .+.++.++..++|+|++|+
T Consensus       153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 667899999999999999987532 33344568999999999 5778999999999999999


Q ss_pred             cCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHH
Q 009665          270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  349 (529)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  349 (529)
                      ...+.. ......++++.|+.+|.++++.++..|+++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       232 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~  309 (528)
T 4b8j_A          232 RGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRT  309 (528)
T ss_dssp             CSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             cCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHH
Confidence            875333 2334579999999999999999999999999999998888888889999999999999998 89999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHH
Q 009665          350 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV  428 (529)
Q Consensus       350 L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~  428 (529)
                      |+|++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+|.+.++.++
T Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~  388 (528)
T 4b8j_A          310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIK  388 (528)
T ss_dssp             HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence            9999999899999999999999999999998 999999999999999985 67888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      ..++++|.++...+...           ....+.+.|+++.|..+..+.++++...|...|.+++.
T Consensus       389 ~~a~~aL~nl~~~~~~~-----------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          389 KEAAWAISNATSGGSHD-----------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             HHHHHHHHHHHHHSCHH-----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHH-----------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            99999999998764221           35566678999999999999999999999888777754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=5.9e-36  Score=302.74  Aligned_cols=365  Identities=19%  Similarity=0.208  Sum_probs=303.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC-Chhh
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSEN  149 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~  149 (529)
                      ..+|.+++.|.++++.+|..|+.+|++++... .+....+++.|+||.|+++|.+++ ++++..|+|+|.||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            47999999999999999999999999987643 566778889999999999999998 99999999999999986 6899


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-----------------cc
Q 009665          150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EH  211 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~-----------------~~  211 (529)
                      +..+++.|+||.|+.+|.+ .+.+++++++++|+||+.. +..+..+.. +++++|+.++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 6789999999999999985 456777775 57999999872                 12


Q ss_pred             hhHHHHHHHHHHHhhhhcCCCC-Cchh-hhhchHHHHHHhhcc------CChHHHHHHHHHHHHhccCCc----------
Q 009665          212 AKLSMLRNATWTLSNFCRGKPQ-PLFE-QTRPALPALERLIHS------NDDEVLTDACWALSYLSDGTN----------  273 (529)
Q Consensus       212 ~~~~~~~~a~~~L~~l~~~~~~-~~~~-~~~~~l~~L~~ll~~------~d~~v~~~a~~~L~~l~~~~~----------  273 (529)
                      .++.++.+++|+|.||+...+. .... ...++++.|+.++++      .+...+++++|+|.||+....          
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            2578999999999999987633 2222 236778899999874      467899999999999986521          


Q ss_pred             ---------------hhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhh----HHHHHhcCChHHHHHH
Q 009665          274 ---------------DKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQ----TQCIINHQALPCLLDL  333 (529)
Q Consensus       274 ---------------~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~----~~~~~~~~~l~~L~~l  333 (529)
                                     ..++.+++.++++.++.+|. +.++.+++.|+++|.|++.+....    ...+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                           11122334456788899995 467899999999999999876322    2234457889999999


Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--------ChhHHHHHHHHHHHHhcCCCHHHHH
Q 009665          334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--------EFEIKKEAAWAISNATSGGSNEQIK  405 (529)
Q Consensus       334 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~  405 (529)
                      |.++ +..+++.|+|+|+||+.+..  .+.++..+++|.|+.+|.++        ..+++..|+++|.|++.. ++++.+
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9998 89999999999999999743  23455788999999999886        357889999999999876 678999


Q ss_pred             HHHHcCChHHHHhccCCC--CHHHHHHHHHHHHHHHHhhh
Q 009665          406 FLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       406 ~l~~~~~l~~L~~lL~~~--~~~v~~~~l~aL~~l~~~~~  443 (529)
                      .+.+.|+++.|+.++.+.  .+.++..+.++|.++....+
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            999999999999999986  78999999999999986543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=4.9e-34  Score=306.02  Aligned_cols=394  Identities=19%  Similarity=0.215  Sum_probs=336.0

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        70 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      .+.++.|++.|+++++.++..|+.+|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.
T Consensus       233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~  310 (780)
T 2z6g_A          233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  310 (780)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHH
Confidence            468999999999999999999999999998753 445566668999999999999987 899999999999999888999


Q ss_pred             HHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          150 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      +..+++.|+++.|+.++.+. ....+..++.+|.+++... ..+..+...|+++.|+.++ .+.+..+++.++|+|.+|+
T Consensus       311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~  388 (780)
T 2z6g_A          311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  388 (780)
T ss_dssp             HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHh
Confidence            99999999999999999885 4567778999999999754 5688889999999999999 5667889999999999999


Q ss_pred             cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC-CC-cchHHHHHHH
Q 009665          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPALRT  306 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~-~~v~~~al~~  306 (529)
                      ...+.  .....++++.|+.++.+.++.++..++++|++|+.........+++.|+++.|+.+|.+ .+ ..++..|+++
T Consensus       389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a  466 (780)
T 2z6g_A          389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  466 (780)
T ss_dssp             TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence            87633  22346899999999999999999999999999999887778889999999999999976 33 3899999999


Q ss_pred             HHHhhcCChh---hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChh
Q 009665          307 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  383 (529)
Q Consensus       307 L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~  383 (529)
                      |++++..+..   ....+...++++.|+.+|.++..+.+++.|+|+|+|++.+ +.....+++.|+++.|+.+|.+++++
T Consensus       467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~  545 (780)
T 2z6g_A          467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD  545 (780)
T ss_dssp             HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchh
Confidence            9999875543   2346778899999999999883459999999999999987 55557888999999999999875544


Q ss_pred             ----------------------HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          384 ----------------------IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       384 ----------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                                            ++..++.+|++++.  ++.....+.+.|+++.|+.+|.+.++.++..++.+|.++...
T Consensus       546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  623 (780)
T 2z6g_A          546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  623 (780)
T ss_dssp             HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence                                  45566667777765  456667788999999999999999999999999999999733


Q ss_pred             hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHH
Q 009665          442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  485 (529)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a  485 (529)
                      .             .++..|.+.|+++.|..|+.+++++|+..|
T Consensus       624 ~-------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A  654 (780)
T 2z6g_A          624 K-------------EAAEAIEAEGATAPLTELLHSRNEGVATYA  654 (780)
T ss_dssp             H-------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             H-------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            2             258889999999999999999999996553

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.1e-35  Score=297.51  Aligned_cols=370  Identities=18%  Similarity=0.217  Sum_probs=304.4

Q ss_pred             HhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-C
Q 009665          110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-S  188 (529)
Q Consensus       110 ~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~  188 (529)
                      -...+.+|.|+.+|.+++ ++++..|+++|.+++.++++.+..+++.|+||.|+.+|.+++.++++.|+|+|.||+.. +
T Consensus        44 ~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~  122 (584)
T 3l6x_A           44 NWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD  122 (584)
T ss_dssp             CCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred             CcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence            346789999999999988 99999999999999998999999999999999999999999999999999999999985 6


Q ss_pred             chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-----------------
Q 009665          189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----------------  251 (529)
Q Consensus       189 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-----------------  251 (529)
                      +..+..+.+.|++++|+.+|....+..+++.++++|++|+... ........+++|.|++++.                 
T Consensus       123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~  201 (584)
T 3l6x_A          123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR  201 (584)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence            7899999999999999999955567889999999999999864 3333444678999999872                 


Q ss_pred             -cCChHHHHHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHhcCC------CCcchHHHHHHHHHHhhcCChh-------
Q 009665          252 -SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM-------  316 (529)
Q Consensus       252 -~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~~-------  316 (529)
                       ..++.++..+.++|.||+...++..+.+++. |+++.|+.++.+      .+...+..|+++|.|++.....       
T Consensus       202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence             2367999999999999998876656667764 777899999864      4567889999999999875221       


Q ss_pred             ------------------hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCCHHHHH
Q 009665          317 ------------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQAII-EAGIIGPLV  374 (529)
Q Consensus       317 ------------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~l~~L~  374 (529)
                                        ....+.+.++++.++.+|....++.+++.|+|+|.|++++..   ...+..+ +.+++|.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                              111222334567788899654478999999999999998752   2233344 567899999


Q ss_pred             HHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC--------CHHHHHHHHHHHHHHHHhhhhhh
Q 009665          375 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--------DPRIVTVCLEGLENILKAGEAEK  446 (529)
Q Consensus       375 ~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--------~~~v~~~~l~aL~~l~~~~~~~~  446 (529)
                      .+|.+++..+++.|+|+|.|++.+..  ... .+..|+++.|+.+|...        ..+++..++++|.+|+..+..  
T Consensus       362 ~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~--  436 (584)
T 3l6x_A          362 DLLTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE--  436 (584)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH--
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH--
Confidence            99999999999999999999998653  222 34678999999999876        357888999999999865432  


Q ss_pred             hcCCCCccchHHHHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHhhCCCC
Q 009665          447 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVEE  496 (529)
Q Consensus       447 ~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~--~~~v~~~a~~il~~~~~~~  496 (529)
                                ....+.+.|+++.|..|..+.  .+.+.+.|.++|.+++...
T Consensus       437 ----------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          437 ----------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             ----------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             ----------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence                      266777899999999998775  8999999999999988643

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=8.4e-34  Score=281.15  Aligned_cols=328  Identities=17%  Similarity=0.191  Sum_probs=275.7

Q ss_pred             hhhccHHHHHHhhcCC------------CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCCh----------HHHHHhhcC
Q 009665           68 KKLESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV----------PRFIEFLSR  125 (529)
Q Consensus        68 ~~~~~l~~l~~~L~s~------------~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i----------~~Li~lL~~  125 (529)
                      .+-|.+|.|++.|+..            ++++++.|+++|.+++++. .+..+...+.|++          +.+++++.+
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEA  145 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence            4458999999999963            3799999999999999876 4455566677777          677777776


Q ss_pred             CC-ChH-----HHH-------HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHH
Q 009665          126 DD-FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWAL  181 (529)
Q Consensus       126 ~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L  181 (529)
                      .. +.+     ++.       +|+|+|.|++. ++++|+.+++.|+++.|+.+|..           .+..++..|+|+|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL  224 (458)
T 3nmz_A          146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL  224 (458)
T ss_dssp             TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             hccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence            42 112     433       99999999987 69999999999999999999942           3477999999999


Q ss_pred             HHhhCCCchhHHHHHh-cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhh-ccCChHH
Q 009665          182 GNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEV  257 (529)
Q Consensus       182 ~nl~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v  257 (529)
                      .||+.+++..+..+.. .|+++.|+.+| .+.+++++..++|+|.+|+...  .........+++|.|+.+| .+.++.+
T Consensus       225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v  303 (458)
T 3nmz_A          225 TNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST  303 (458)
T ss_dssp             HHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH
T ss_pred             HHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH
Confidence            9999887766666654 56699999999 6788999999999999999852  2223344579999999975 5678899


Q ss_pred             HHHHHHHHHHhccCCchhHHHHH-HhCcHHHHHHhcCCCCcc----hHHHHHHHHHHhhc---CChhhHHHHHhcCChHH
Q 009665          258 LTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPS----VLIPALRTVGNIVT---GDDMQTQCIINHQALPC  329 (529)
Q Consensus       258 ~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~----v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~  329 (529)
                      +..++.+|++|+...++....+. ..|+++.|+.+|.+.+..    ++..|+++|.|++.   +++..++.+.+.|+++.
T Consensus       304 ~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~  383 (458)
T 3nmz_A          304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT  383 (458)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence            99999999999984444444455 789999999999887653    89999999999997   78888999999999999


Q ss_pred             HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       330 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      |+.+|.++ +..++++|+|+|+|++.++++++..+++.|++|.|++++.+++..+++.|+|+|.|++.+.
T Consensus       384 Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          384 LLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999998 8899999999999999888999999999999999999999999999999999999999864

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.9e-33  Score=291.13  Aligned_cols=403  Identities=16%  Similarity=0.135  Sum_probs=337.0

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        71 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      +.++.+++.|.+ +++.++..|+.+|+++...  ..+...+++.|++|.|+++|.+++ +.++..|+++|.+++..++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            478999999975 5899999999999997643  346777889999999999999988 999999999999999977778


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      +..+.+.|++|.|+.++.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+......++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999998888899999999999999999665566778888999999997


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      ...........++++.|+.++.+.++.++..++|+|.+++.......   ...++++.|+.++.++++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            65444444457899999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHHhcCC-hhH
Q 009665          310 IVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI  384 (529)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~~l~~~~-~~v  384 (529)
                      ++.+++.....+.+.|+++.|+.+|.+. .++.++..|+++|+|++.++++   ....+++.|+++.|+.+|.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            9998888888899999999999999763 1478999999999999986433   3557789999999999999875 599


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHH----------------------HHHhh
Q 009665          385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN----------------------ILKAG  442 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~----------------------l~~~~  442 (529)
                      +..++|+|+|++.+.  .....+.+.|+++.|+.++.+++++++..+.|++.+                      +....
T Consensus       373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~  450 (529)
T 1jdh_A          373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence            999999999999853  444788899999999999988777777766665554                      32211


Q ss_pred             hhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                                   .....+.+.|+++.|..+..+++++++..|.+.+.++..
T Consensus       451 -------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          451 -------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             -------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             -------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence                         124567789999999999999999999999999988763

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=3e-32  Score=287.92  Aligned_cols=403  Identities=17%  Similarity=0.153  Sum_probs=341.1

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        71 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      +.++.+++.|.++ ++.++..|+.+|+.+...  ......+.+.|+++.|+++|.+++ +.++..|+++|.+++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            4689999999864 899999999999987543  346777889999999999999988 999999999999999977778


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      +..+++.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999987788899999999999999999666567788899999999997


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.++.++++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6544444555789999999999999999999999999999764321   1122789999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHcCCHHHHHHHHhcCC-hhH
Q 009665          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV--NQIQ-AIIEAGIIGPLVNLLLNAE-FEI  384 (529)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~l~~L~~~l~~~~-~~v  384 (529)
                      ++.+++.....+.+.|+++.|+.+|.+..+ +.++..|+++|+|++...+  +..+ .+++.++++.|+.+|.+++ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            999888888889999999999999987423 7899999999999997433  2333 4778899999999999874 699


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 009665          385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG  442 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~----------------------~~v~~~~l~aL~~l~~~~  442 (529)
                      ++.|+|+|+|++.+.  .....+.+.|+++.|+.+|...+                      .+++..++.+|.++....
T Consensus       370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999999853  34478889999999999987643                      345667777777776443


Q ss_pred             hhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      .             ....+.+.|+++.|..+..+.+++++..|...|.++..
T Consensus       448 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          448 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             H-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             H-------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            1             25667789999999999999999999999998887654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=4.1e-32  Score=291.10  Aligned_cols=402  Identities=16%  Similarity=0.156  Sum_probs=338.9

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        71 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      +.++.|++.|.+ .++.++..|+.+|.++...  ..+...+.+.|+++.|+.+|.+++ +.++..|+++|.+++...+..
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            468999999985 4899999999999996543  345667788999999999999998 999999999999999977788


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+...++++.|+.++...........++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988888889999999999999999655556677788999999997


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      ...........++++.|+.++.+.++.++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6544444455789999999999999999999999999999765321   1123689999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHHhcCCh-hH
Q 009665          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI  384 (529)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~~l~~~~~-~v  384 (529)
                      ++.+++.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++   ....+...++++.|+.+|.+++. .+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999888888889999999999999976423 48999999999999975433   23467789999999999998764 99


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 009665          385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG  442 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~----------------------~~v~~~~l~aL~~l~~~~  442 (529)
                      ++.|+|+|+|++.+  +.....+.+.|+++.|+.+|.+.+                      .+++..++.+|.++....
T Consensus       506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~  583 (780)
T 2z6g_A          506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI  583 (780)
T ss_dssp             HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence            99999999999974  455578889999999999987543                      345667777788775321


Q ss_pred             hhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665          443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  493 (529)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  493 (529)
                                   .....+.+.|+++.|..+..+.+++++..|...|.++.
T Consensus       584 -------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          584 -------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             -------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             -------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence                         12566778999999999999999999999988887764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.7e-30  Score=247.88  Aligned_cols=273  Identities=19%  Similarity=0.183  Sum_probs=237.1

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc----------chhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009665          169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ  238 (529)
Q Consensus       169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~  238 (529)
                      +......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|..          ..++.+++.++|+|.||+.+.+......
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4556777999999999988 6789999999999999999942          2357899999999999998863233222


Q ss_pred             --hhchHHHHHHhhccCChHHHHHHHHHHHHhccC-CchhHHHHHHhCcHHHHHHhc-CCCCcchHHHHHHHHHHhhcCC
Q 009665          239 --TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD  314 (529)
Q Consensus       239 --~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~al~~L~~l~~~~  314 (529)
                        ..+++|.|+.+|.+++++++..++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.++.++..|+.+|+|++..+
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence              356799999999999999999999999999985 455667888999999999975 6678889999999999999966


Q ss_pred             hhhHHHHH-hcCChHHHHHHhccCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHH
Q 009665          315 DMQTQCII-NHQALPCLLDLLTQNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  387 (529)
Q Consensus       315 ~~~~~~~~-~~~~l~~L~~lL~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~  387 (529)
                      +.....+. ..|+++.|+.+|.++.+.   .+++.|+|+|.|++.   +++++++.+++.|+++.|+.+|.+++..++++
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence            65555565 789999999999876222   599999999999997   67899999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009665          388 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       388 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~  443 (529)
                      |+|+|.|++.. ++++...+.+.|+++.|+++|.++++.++..++++|.+|+...+
T Consensus       283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999999865 67888999999999999999999999999999999999997644

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=4.6e-30  Score=247.27  Aligned_cols=269  Identities=19%  Similarity=0.193  Sum_probs=234.1

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009665          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS  197 (529)
Q Consensus       129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  197 (529)
                      ...+..|+|+|.+++. ++++++.+++.|+++.|+.+|..           .+..++..|+|+|.||+..++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4567789999999999 58999999999999999999942           24789999999999999887767777654


Q ss_pred             -cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC--CCCchhhhhchHHHHHHhh-ccCChHHHHHHHHHHHHhccCCc
Q 009665          198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       198 -~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L~~l~~~~~  273 (529)
                       .|+++.|+.+| .+.++.++..++|+|.||+...  .........+++|.|+++| .+.+++++..++++|.+|+...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             45699999999 6788999999999999999862  2233444579999999975 56789999999999999998554


Q ss_pred             hhHHHHH-HhCcHHHHHHhcCCCCc----chHHHHHHHHHHhhc---CChhhHHHHHhcCChHHHHHHhccCCchhHHHH
Q 009665          274 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  345 (529)
Q Consensus       274 ~~~~~~~-~~~~~~~L~~lL~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  345 (529)
                      +....+. ..|+++.|+.+|.++++    .++..|+++|.|++.   +++..++.+.+.|+++.|+.+|.++ +..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            4445555 68999999999987655    489999999999997   6888889999999999999999998 8999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 009665          346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (529)
Q Consensus       346 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (529)
                      |+|+|+|++.+++++++.+++.|++|.|++++.+++..+++.|+++|.|++.+..
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999998889999999999999999999999999999999999999998754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=6.5e-27  Score=217.49  Aligned_cols=240  Identities=28%  Similarity=0.433  Sum_probs=222.5

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (529)
                      |.+|.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.+|.+++..++..++++|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57899999999998 99999999999999998888999999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~  272 (529)
                      .+.+.|+++.++.++ .+.++.++..++|+|.+++... .........++++.|++++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6778999999999999999755 33333445789999999999999999999999999999988


Q ss_pred             chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (529)
Q Consensus       273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  352 (529)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            77778899999999999999999999999999999999998888888899999999999999998 89999999999999


Q ss_pred             HhcC
Q 009665          353 ITAG  356 (529)
Q Consensus       353 l~~~  356 (529)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=5e-27  Score=218.34  Aligned_cols=240  Identities=35%  Similarity=0.554  Sum_probs=220.4

Q ss_pred             cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009665          113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (529)
Q Consensus       113 ~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (529)
                      ...++.++.+|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+++..+
T Consensus        11 ~~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           11 GSELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             TCSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            346899999999998 8999999999988776677888889999999999999999999999999999999999888899


Q ss_pred             HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~  271 (529)
                      ..+.+.|+++.++.++ .+.++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++|+|++++..
T Consensus        90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999 6678999999999999999886444 4455678999999999999999999999999999998


Q ss_pred             CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                      .+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|..++.++ ++.++..|+|+|+
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~  247 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALE  247 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHH
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            888888889999999999999999999999999999999998888888899999999999999998 9999999999999


Q ss_pred             HHhc
Q 009665          352 NITA  355 (529)
Q Consensus       352 nl~~  355 (529)
                      |++.
T Consensus       248 ~l~~  251 (252)
T 4db8_A          248 KLQS  251 (252)
T ss_dssp             TTC-
T ss_pred             HHhc
Confidence            9974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2.3e-26  Score=213.81  Aligned_cols=241  Identities=28%  Similarity=0.433  Sum_probs=222.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCc
Q 009665          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL  235 (529)
Q Consensus       157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  235 (529)
                      |.++.|+.+|.+++++++..|+++|++++...+..+..+.+.|+++.++.++ .+.+..++..++|+|.+++... ....
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            5689999999999999999999999999988887889999999999999999 6677999999999999999875 3334


Q ss_pred             hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009665          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (529)
Q Consensus       236 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  315 (529)
                      .....++++.++.++.+++++++..++++|++++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+++
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            44557899999999999999999999999999998777777889999999999999999999999999999999999888


Q ss_pred             hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (529)
Q Consensus       316 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  395 (529)
                      .....+.+.|+++.|+.++.++ ++.++..|+|+|++++.+++.....+.+.|+++.|+.++.+++++++..|+++|.|+
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI  239 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            8888899999999999999988 899999999999999998899999999999999999999999999999999999999


Q ss_pred             hcCC
Q 009665          396 TSGG  399 (529)
Q Consensus       396 ~~~~  399 (529)
                      ....
T Consensus       240 ~~~~  243 (252)
T 4hxt_A          240 KSGG  243 (252)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            8754

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=1.8e-26  Score=216.26  Aligned_cols=235  Identities=16%  Similarity=0.151  Sum_probs=201.5

Q ss_pred             hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH-hcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHH
Q 009665          255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  333 (529)
Q Consensus       255 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  333 (529)
                      .+-+..++..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++..++.+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3567888999999998654 5566888999999999 9999999999999999999999999999999999999999999


Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 009665          334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  413 (529)
Q Consensus       334 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  413 (529)
                      |.++.+..+++.|+|+|+|++++++...+.+++.|+++.|+.+|.++++.++..|+|+|++++.+ +++.+..+++.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643789999999999999999899888999999999999999999999999999999999987 56888999999999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC-CHHHHHHHHHHHHhh
Q 009665          414 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETY  492 (529)
Q Consensus       414 ~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~  492 (529)
                      +.|+.+|.++++.++..++++|.+|+...+....... ...+.+..++++.     ++.++.++ +.++|++|..|+++|
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~~-----~~~lq~~e~~~e~~~~~~~il~~~  285 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRHR-----CQLLQQHEEYQEELEFCEKLLQTC  285 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHHH-----HHHccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987543211100 0123467777653     67788676 799999999999999


Q ss_pred             CCCCC
Q 009665          493 WVEED  497 (529)
Q Consensus       493 ~~~~~  497 (529)
                      |+.++
T Consensus       286 f~~~~  290 (296)
T 1xqr_A          286 FSSPA  290 (296)
T ss_dssp             CC---
T ss_pred             cCCCC
Confidence            97643

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.9e-26  Score=214.36  Aligned_cols=239  Identities=36%  Similarity=0.574  Sum_probs=217.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      ..++.+++.|++++++++..|++.|+++++. ..+....+++.|++|.|+++|.+++ +.++..|+++|.+++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            3689999999999999999999999998876 3566788899999999999999998 9999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.++.++..++|+|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988775448889999999999999 667899999999999999987


Q ss_pred             CCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          231 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       231 ~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      .+. .......+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            522 2233447999999999999999999999999999998887888889999999999999999999999999999999


Q ss_pred             hhc
Q 009665          310 IVT  312 (529)
Q Consensus       310 l~~  312 (529)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.6e-23  Score=210.63  Aligned_cols=400  Identities=15%  Similarity=0.128  Sum_probs=298.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      ..+.+.+.+.+........++..+...++.  +..++.++..+.++.|...+++   ..++..|+-+|..+.........
T Consensus       256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~  330 (778)
T 3opb_A          256 LSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCI  330 (778)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTC
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcC
Confidence            355666666544333344445555554554  3566778888899999999964   57899999999998873322111


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      .+.  .+.+.+.++|.+++.+-+..|++.|+.++.+.. .|+.+.. .+++..|+.++....+..+...++.+|.|++..
T Consensus       331 si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~  407 (778)
T 3opb_A          331 NLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL  407 (778)
T ss_dssp             CHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred             cHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence            111  245777888888776669999999999987755 5666554 456999999995456778999999999999986


Q ss_pred             CCCCc---------------------------------------hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665          231 KPQPL---------------------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       231 ~~~~~---------------------------------------~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~  271 (529)
                      .+...                                       .....|++|.|+.++.++++.++..++|+|.+|+..
T Consensus       408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d  487 (778)
T 3opb_A          408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS  487 (778)
T ss_dssp             CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred             CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            53210                                       011268999999999999999999999999999976


Q ss_pred             CchhHHHHHHhCcHHHHHHhcCCCCcc---hHHHHHHHHHHhhcCChhhHHHHHh----cCChHHHHHHhcc-CCch---
Q 009665          272 TNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCIIN----HQALPCLLDLLTQ-NYKK---  340 (529)
Q Consensus       272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~---v~~~al~~L~~l~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~---  340 (529)
                      . +....+++.|+++.|+.+|.+....   .+..|+++|+++....+...  ++.    .++++.|+.+|.. +...   
T Consensus       488 ~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~  564 (778)
T 3opb_A          488 K-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNP  564 (778)
T ss_dssp             G-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred             H-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccccc
Confidence            4 5567789999999999999887544   78999999999986443222  221    3889999999983 2111   


Q ss_pred             ---------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHH-H
Q 009665          341 ---------SIKKEACWTISNITAGN----VNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI-K  405 (529)
Q Consensus       341 ---------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~-~  405 (529)
                               --+.+|+.+|.|++..+    .+....++.. |+++.|.++|.+++..+|++|+++++|++..  ++.+ .
T Consensus       565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~  642 (778)
T 3opb_A          565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAA  642 (778)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGG
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHH
Confidence                     12779999999999974    2446778884 8999999999999999999999999999974  3332 2


Q ss_pred             HHHHc------CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC--C
Q 009665          406 FLVSQ------GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH--D  477 (529)
Q Consensus       406 ~l~~~------~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~--~  477 (529)
                      .+...      +.++.|+.+++.+|.+++.++.++|.++....+..           ...+++..+|++.+..+..+  +
T Consensus       643 k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-----------a~~ll~~~~gi~~Ll~lL~~~~~  711 (778)
T 3opb_A          643 KFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-----------AKELLTKKELIENAIQVFADQID  711 (778)
T ss_dssp             GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----------HHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----------HHHHHHccccHHHHHHHHhccCC
Confidence            22211      13778999999999999999999999996544322           14445555899999888766  8


Q ss_pred             CHHHHHHHHHHHHhhCCC
Q 009665          478 NTEIYEKAVKILETYWVE  495 (529)
Q Consensus       478 ~~~v~~~a~~il~~~~~~  495 (529)
                      +++++.++..++.+++..
T Consensus       712 ~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          712 DIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             CHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999999873

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.8e-23  Score=212.84  Aligned_cols=358  Identities=14%  Similarity=0.110  Sum_probs=281.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .++.|...+++  ..++..|+..|.++.+...... ..+.  .+.+.+.++|.+++ .+-+..|++.|..++. .++.+.
T Consensus       297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe  369 (778)
T 3opb_A          297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKI  369 (778)
T ss_dssp             HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHH
T ss_pred             HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHH
Confidence            45666666654  5788899999999877543221 1111  26788899998877 6679999999999998 677777


Q ss_pred             HHHh-CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch--------------------------------------h
Q 009665          152 VVID-HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK--------------------------------------C  191 (529)
Q Consensus       152 ~~~~-~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~  191 (529)
                      .+++ .|.++.|+.++.. .+..+...++.+|.|++.+.+.                                      .
T Consensus       370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~  449 (778)
T 3opb_A          370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN  449 (778)
T ss_dssp             HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence            7775 4679999999985 7788999999999999863321                                      3


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChH---HHHHHHHHHHHh
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE---VLTDACWALSYL  268 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~---v~~~a~~~L~~l  268 (529)
                      +..+.+.|+++.|+.++ .+.++.++..++|+|.+|+............|+++.|+.++.+....   ++..|+++|.++
T Consensus       450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            45678899999999999 77789999999999999998765555666689999999999877544   899999999999


Q ss_pred             ccCCchhHHHHHH----hCcHHHHHHhcCC-CCcc-------------hHHHHHHHHHHhhcCCh----hhHHHHHhc-C
Q 009665          269 SDGTNDKIQAVIE----AGVCPRLVELLRH-PSPS-------------VLIPALRTVGNIVTGDD----MQTQCIINH-Q  325 (529)
Q Consensus       269 ~~~~~~~~~~~~~----~~~~~~L~~lL~~-~~~~-------------v~~~al~~L~~l~~~~~----~~~~~~~~~-~  325 (529)
                      +...+...  ++.    .|+++.|+.+|.. +...             -+..|+.+|+|++...+    ..+..++.. |
T Consensus       529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g  606 (778)
T 3opb_A          529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV  606 (778)
T ss_dssp             HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred             HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence            85443221  221    2899999999983 2211             16789999999999762    345667775 8


Q ss_pred             ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHc------CCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665          326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI-QAIIEA------GIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       326 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~------~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (529)
                      +++.|..+|.++ +..+|++|+|+++|++.. ++.+ +.+.+.      +.++.|+.++..++.++|..|+|+|++++..
T Consensus       607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~  684 (778)
T 3opb_A          607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT  684 (778)
T ss_dssp             HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            999999999988 889999999999999985 5543 233321      2378899999999999999999999999754


Q ss_pred             CCHHHHHHHHHc-CChHHHHhccCC--CCHHHHHHHHHHHHHHHHhh
Q 009665          399 GSNEQIKFLVSQ-GCIKPLCDLLNC--PDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       399 ~~~~~~~~l~~~-~~l~~L~~lL~~--~~~~v~~~~l~aL~~l~~~~  442 (529)
                       .+..+..+++. ++++.++.++..  ++.+++..++.++.|++.+.
T Consensus       685 -~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          685 -IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             -CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             -ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence             45677778776 789999999998  89999999999999999754

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=4.5e-23  Score=185.85  Aligned_cols=198  Identities=38%  Similarity=0.590  Sum_probs=185.6

Q ss_pred             hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHH
Q 009665          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  319 (529)
Q Consensus       240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~  319 (529)
                      .+..+.|..++.+++++++..++|+|.+++...++....+++.|+++.|+.+|.++++.++..|+++|++++.+++....
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            57788999999999999999999999999988888888899999999999999999999999999999999998888888


Q ss_pred             HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      .+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++++++..|+++|.|++.. 
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-  168 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-  168 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            999999999999999999 999999999999999998899988999999999999999999999999999999999986 


Q ss_pred             CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          400 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       400 ~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      +++....+.+.|+++.|+.++.+++++++..++++|.++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            4677888899999999999999999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=1.5e-22  Score=182.46  Aligned_cols=199  Identities=33%  Similarity=0.526  Sum_probs=181.1

Q ss_pred             hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009665          112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  191 (529)
Q Consensus       112 ~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  191 (529)
                      ..|..+.|+.+|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4578999999999998 999999999999999888999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~  270 (529)
                      +..+.+.|+++.++.+| .+.++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999 6778999999999999999865322 233457899999999999999999999999999999


Q ss_pred             CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 009665          271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  312 (529)
Q Consensus       271 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~  312 (529)
                      ..+.....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            877777889999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=4.8e-22  Score=186.19  Aligned_cols=188  Identities=18%  Similarity=0.198  Sum_probs=170.0

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 009665          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  207 (529)
Q Consensus       129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~  207 (529)
                      .+-+..|+..|.+++. +.++...+...|++|.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678899999999998 6678888899999999999 9999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHHHhhhhcCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHH
Q 009665          208 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  286 (529)
Q Consensus       208 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  286 (529)
                      |..+.+..+++.++|+|++++++.+. .......+++|.|+.+|.+++..++..++|+|++++...++....+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            95455789999999999999998743 22334468999999999999999999999999999988888889999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHhhcCChhh
Q 009665          287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  317 (529)
Q Consensus       287 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~  317 (529)
                      .|+.+|.+++..++..|+++|++++.+....
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence            9999999999999999999999999975543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.84  E-value=2e-20  Score=167.45  Aligned_cols=197  Identities=19%  Similarity=0.144  Sum_probs=169.6

Q ss_pred             ChHHHHHhhcCCCCh--HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009665          115 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (529)
                      .+|.|+++|.+++ +  +++..|+++|.+++.++++.+..+++.|+||.|+++|.++++++++.|+|+|.||+.++++.+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999988 6  899999999999998889999999999999999999999999999999999999999888899


Q ss_pred             HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc----------------cCChH
Q 009665          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE  256 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----------------~~d~~  256 (529)
                      ..+.+.|++++|+.+|..+.+.++++.++.+|++|+...... .....+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            999999999999999954568899999999999998765333 3344567888887653                13679


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHhcCC------CCcchHHHHHHHHHHhhcC
Q 009665          257 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       257 v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~al~~L~~l~~~  313 (529)
                      ++.++..+|.+|+..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776666767765 778999999864      2557889999999999874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.82  E-value=8.7e-20  Score=163.26  Aligned_cols=196  Identities=18%  Similarity=0.180  Sum_probs=164.8

Q ss_pred             cHHHHHHhhcCCCH--HHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           72 SLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        72 ~l~~l~~~L~s~~~--~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      .+|.+++.|+++++  .+|..|+..++.+.... .+....+++.|+||.|+++|.+++ +++|..|+|+|.||+.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            78999999999988  89999999999977543 456778889999999999999988 999999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc---------------chh
Q 009665          150 TRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------------HAK  213 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~---------------~~~  213 (529)
                      +..+++.|+||.|+++|. +++.+++++++.+|+|++.... .+..+.+ +++++|+.++..               ..+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999997 5789999999999999997654 5666666 468888886630               126


Q ss_pred             HHHHHHHHHHHhhhhcCC-CCCchhh-hhchHHHHHHhhcc------CChHHHHHHHHHHHHhccC
Q 009665          214 LSMLRNATWTLSNFCRGK-PQPLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       214 ~~~~~~a~~~L~~l~~~~-~~~~~~~-~~~~l~~L~~ll~~------~d~~v~~~a~~~L~~l~~~  271 (529)
                      +.++.++.++|.||+... ....... ..|+++.|+.+++.      .+...+++++.+|.||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            689999999999999865 2223232 35788999999884      2668899999999999864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.80  E-value=5.9e-18  Score=177.09  Aligned_cols=343  Identities=12%  Similarity=0.132  Sum_probs=248.8

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhH
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCR  192 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~  192 (529)
                      .++|.+..++.+++ +.+|..++.+|+.++.....   ......+++.+..++.++++.+|..|+++|+.++.... ..+
T Consensus       242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence            35666666776666 77777777777777652111   11223567888899988899999999999999884332 111


Q ss_pred             HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~  272 (529)
                      .......+++.+..++ .+.++.++..++++|..++..-.  .......++|.+..++.+++++|+..++.++..++...
T Consensus       318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG--KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence            1122234566777777 67788999999999999886421  11224568899999999999999999999999887543


Q ss_pred             chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (529)
Q Consensus       273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  352 (529)
                      ...   .....+++.+..++.+.++.++..++.+++.++......   .+...+++.+..++.++ +..+|..|+.+++.
T Consensus       395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK  467 (588)
T ss_dssp             CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence            211   122367888899999999999999999999987522111   11224678888889888 89999999999999


Q ss_pred             HhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHH
Q 009665          353 ITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  431 (529)
Q Consensus       353 l~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~  431 (529)
                      ++.. .++    .....++|.|..++.++++.+|..++++++.++...+.+.    ....+++.|..+++++++.++..+
T Consensus       468 l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~d~~~~Vr~~a  539 (588)
T 1b3u_A          468 LVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLRMAGDPVANVRFNV  539 (588)
T ss_dssp             HHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHhhCCCCCchHHHHH
Confidence            9873 122    1123488889888888899999999999999986432221    234588999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665          432 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  493 (529)
Q Consensus       432 l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  493 (529)
                      +++|..+......              ..+ ....++.|..+..+++++|+..|...+..+-
T Consensus       540 ~~~l~~l~~~~~~--------------~~~-~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          540 AKSLQKIGPILDN--------------STL-QSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHGGGSCH--------------HHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhch--------------hhh-HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            9999999864321              111 1334667778889999999999999988763

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.79  E-value=3.4e-18  Score=186.67  Aligned_cols=353  Identities=13%  Similarity=0.153  Sum_probs=260.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      -+.+++.|.++++.+|..++.++..++..+.  + .  .-.++++.|+..+.+++ +.++..++.+|+.++...+.....
T Consensus        92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~--~-~--~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~  165 (852)
T 4fdd_A           92 KSECLNNIGDSSPLIRATVGILITTIASKGE--L-Q--NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS  165 (852)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTT--T-T--TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC--c-c--ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence            3567777888899999999999999987541  1 1  12458899999999988 899999999999999743332111


Q ss_pred             HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          153 VI----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       153 ~~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      -.    -..+++.|++++.+++..+|..|+++++++....+...... -..+++.++..+ .+.++.++..++++|..++
T Consensus       166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~  243 (852)
T 4fdd_A          166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLL  243 (852)
T ss_dssp             CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence            00    12357778888888999999999999999886543211000 013566677766 6678899999999999999


Q ss_pred             cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh---CcHHHHHHhc-----------CC
Q 009665          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------RH  294 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~lL-----------~~  294 (529)
                      ...+.........+++.+...+.+.++.++..+++++..++.....  ...+..   .+++.++..+           .+
T Consensus       244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d  321 (852)
T 4fdd_A          244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD  321 (852)
T ss_dssp             HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred             HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence            8764333344567889999999999999999999999999875421  112221   4566676666           23


Q ss_pred             -----------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009665          295 -----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  363 (529)
Q Consensus       295 -----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  363 (529)
                                 .++.++..|..+|+.++...+..   ++. .+++.+...+.++ ++.+|..|++++++++.+..+....
T Consensus       322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~  396 (852)
T 4fdd_A          322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP  396 (852)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence                       34567889999999998744322   222 4678888888888 9999999999999999987765544


Q ss_pred             HHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHH-HHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       364 l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      .+ .++++.++..+.++++.||..|+|++++++...... ...++  .++++.|+..+.+.++.++..++++|.+++...
T Consensus       397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            33 347999999999999999999999999998632110 01111  246788888888899999999999999998765


Q ss_pred             h
Q 009665          443 E  443 (529)
Q Consensus       443 ~  443 (529)
                      .
T Consensus       474 ~  474 (852)
T 4fdd_A          474 C  474 (852)
T ss_dssp             G
T ss_pred             h
Confidence            4

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.78  E-value=9.8e-18  Score=175.39  Aligned_cols=382  Identities=11%  Similarity=0.123  Sum_probs=286.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .++.+...+.++++.+|..|+.++..+.....   . ......++|.|..++.+++ +.+|..|+.+|..++...+..  
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~---~-~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---L-DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---H-HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc---H-HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence            35666677788899999999999999875431   1 1223468899999998888 899999999999988643321  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                       .....++|.+..++.+++..+|..++.+|+.++.....   ......+++.++.++ .+.++.++..+++++..++...
T Consensus       238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence             12234788899999999999999999999999743211   112334678888888 6778899999999999998875


Q ss_pred             CCCch--hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          232 PQPLF--EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       232 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      +....  .....++|.+..++.+.++.++..++++|+.++......   .....+++.+..++.++++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~  389 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            33211  345778899999999999999999999999987542221   1223578889999999999999999999998


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 009665          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  388 (529)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a  388 (529)
                      ++......   .....++|.+..++.+. ++.+|..++.+++.++.. .++    .....++|.+...+.+++..+|..|
T Consensus       390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a  461 (588)
T 1b3u_A          390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            87643211   12235778888888887 899999999999998752 111    1112267888888988899999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHH
Q 009665          389 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE  468 (529)
Q Consensus       389 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~  468 (529)
                      +.+++.++...+++.    ....+++.|..++.++++.++..+++++..+.......          .+.     ...++
T Consensus       462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------~~~-----~~~~~  522 (588)
T 1b3u_A          462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------ITT-----KHMLP  522 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------HHH-----HHTHH
T ss_pred             HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------HHH-----HHHHH
Confidence            999999987544332    12457888999999999999999999999887653211          011     23467


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          469 KIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       469 ~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      .+..+..+++++|+..+.+.+..++..
T Consensus       523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          523 TVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence            788888899999999999999888753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.78  E-value=1.9e-17  Score=180.65  Aligned_cols=394  Identities=15%  Similarity=0.150  Sum_probs=277.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      +-.++..+.+.++.+|..|+..|++.+... -.....-....+-+.+++.|.+++ +.+|..++.++..++..+...   
T Consensus        50 l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~---  124 (852)
T 4fdd_A           50 LIFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ---  124 (852)
T ss_dssp             HHHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT---
T ss_pred             HHHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc---
Confidence            344555456788999999999999988642 111111122345567777888877 899999999999999743111   


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH----hcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL----SNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                       .-.++++.|+..+.+++..+++.++.+|+.++.+.+.....-.    -..+++.++..+ .+.++.++..+++++..+.
T Consensus       125 -~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~  202 (852)
T 4fdd_A          125 -NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFI  202 (852)
T ss_dssp             -TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTT
T ss_pred             -ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence             1135789999999999999999999999999865432211000    012455556666 5678899999999999888


Q ss_pred             cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009665          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~  308 (529)
                      ...+.........+++.+..++.+++++++..++++|..++....+.....++ ++++.++.++.+.++.++..|+.++.
T Consensus       203 ~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~  281 (852)
T 4fdd_A          203 ISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWL  281 (852)
T ss_dssp             TTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHH
Confidence            66433223334578889999999999999999999999999766544333333 57888888889989999999999999


Q ss_pred             HhhcCChhhHHHHHh---cCChHHHHHHh-----------cc--C--------CchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009665          309 NIVTGDDMQTQCIIN---HQALPCLLDLL-----------TQ--N--------YKKSIKKEACWTISNITAGNVNQIQAI  364 (529)
Q Consensus       309 ~l~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l  364 (529)
                      .++.... .. ..+.   ..+++.++..+           .+  .        ....+|+.|+.+|..++...++   .+
T Consensus       282 ~l~~~~~-~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~  356 (852)
T 4fdd_A          282 TLAEQPI-CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---EL  356 (852)
T ss_dssp             HHTTSTT-HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GG
T ss_pred             HHhcchh-HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HH
Confidence            9986432 11 1221   13456666666           22  0        1456899999999998874222   12


Q ss_pred             HHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009665          365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  444 (529)
Q Consensus       365 ~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~  444 (529)
                      +. .+++.+...+.++++.+|..|+++|++++.+.......++  .++++.++.+++++++.|+..++++|+++......
T Consensus       357 ~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  433 (852)
T 4fdd_A          357 LP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS  433 (852)
T ss_dssp             HH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred             HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            22 3678888888888999999999999999987543222222  35789999999999999999999999998865432


Q ss_pred             hhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          445 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       445 ~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      ...       ..+.     .+.++.|.....++++.++..|.+.+..+..
T Consensus       434 ~~~-------~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          434 QPP-------DTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             SCT-------TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             chH-------HHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            110       0111     1335566666677899999999999988764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.77  E-value=1.7e-17  Score=172.73  Aligned_cols=332  Identities=16%  Similarity=0.181  Sum_probs=225.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .++.+.+.|+++|+.++..|++++.++..    +.   + ...+++.+.+++.+++ +.+|..|++++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~---~-~~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV----DK---I-TEYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS----GG---G-HHHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HH---H-HHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            45677777888889888888887777531    11   1 1235678999999888 99999999999999986666432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                         +.+.++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..++..+ .+.++-.+..++.++..++...
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence               246789999999999999999999999999987653210101112355666666 4456666777777777766332


Q ss_pred             CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC---CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009665          232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (529)
Q Consensus       232 ~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~  308 (529)
                          ......+++.+..++++.++.|+..|++++.++...   +++..+.+.. .+.+.|+.++. +++.++..|+.+|+
T Consensus       234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHHHHHHHH
Confidence                233467888888999999999999999999999752   2333343332 55677776664 77899999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHH
Q 009665          309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  388 (529)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a  388 (529)
                      .++...+.....     .+..+. .+.+. +..+|..|++++.+++..+  ++..     +++.|...+.+.+.+++..+
T Consensus       308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~~-----iv~~L~~~l~~~d~~~r~~~  373 (591)
T 2vgl_B          308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIAQ-----VLAELKEYATEVDVDFVRKA  373 (591)
T ss_dssp             HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THHH-----HHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHHH-----HHHHHHHHHhcCCHHHHHHH
Confidence            998754432211     111111 11233 4677888888888776542  1221     45566677777777888888


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          389 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       389 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      +++|+.++.... ....     .+++.|++++......++..++.++..++...
T Consensus       374 v~aI~~la~~~~-~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~  421 (591)
T 2vgl_B          374 VRAIGRCAIKVE-QSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKY  421 (591)
T ss_dssp             HHHHHHHHTTCH-HHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCh-hHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHC
Confidence            888888876532 2222     24567777777777666666666777666543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.75  E-value=5.9e-15  Score=147.59  Aligned_cols=416  Identities=13%  Similarity=0.149  Sum_probs=295.1

Q ss_pred             ccHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------hhhHHh-hcCChHHHHHhhcCCCChHH
Q 009665           71 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QSGVVPRFIEFLSRDDFPQL  131 (529)
Q Consensus        71 ~~l~~l~~~L~s--~~~~~~~~a~~~l~~lls~~~~~----------------~~~~~i-~~g~i~~Li~lL~~~~~~~v  131 (529)
                      .+++.++..|+.  .|.++...++..|..+++.+..+                ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            478999999984  57888888999998888754321                122333 5678999999999988 899


Q ss_pred             HHHHHHHHHHHhcCChh-hHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc
Q 009665          132 QFEAAWALTNIASGTSE-NTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN  209 (529)
Q Consensus       132 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~  209 (529)
                      |..++.+|..++...++ ..+.+.. .++++.|+.+|.+..+.+|..++..|.+++.++++.++.+.-.|+++.|+.++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999987777 6666775 499999999999999999999999999999999999999999999999999995


Q ss_pred             cch---hHHHHHHHHHHHhhhhcCCC-CCchhhhhchHHHHHHhhccCCh------HHHHH---HHHHHHHhccCCc---
Q 009665          210 EHA---KLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDD------EVLTD---ACWALSYLSDGTN---  273 (529)
Q Consensus       210 ~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~d~------~v~~~---a~~~L~~l~~~~~---  273 (529)
                      ...   ...+...++.++.+|.+.++ ........+++|.|..++..+++      ....+   ++.++.-++....   
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            332   23678889999999999873 34444557899999999875432      23333   5556666654422   


Q ss_pred             ---hhHHHHHHhCcHHHHHHhcCCC--CcchHHHHHHHHHHhhcCChhhHHHHHhcC---------ChHHHHHHhccCCc
Q 009665          274 ---DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ---------ALPCLLDLLTQNYK  339 (529)
Q Consensus       274 ---~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~  339 (529)
                         .+...+.+.|++..|+.++...  ...++..|+.+++.+..++......+.+..         ++..++.++.+...
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence               2345688899999999998765  456889999999999999987776665432         23334444555547


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CCH---HHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHH
Q 009665          340 KSIKKEACWTISNITAGNVNQIQAIIEA----------GII---GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  406 (529)
Q Consensus       340 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~l---~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  406 (529)
                      ..+|.+|+.++..+..++++....++..          +.+   ..++..+-+.|+----.|+.++.++... +++....
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~  457 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ  457 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence            8899999999999999887765555542          111   1244555555654444588888998876 3344333


Q ss_pred             HHH--------cCC---hHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh
Q 009665          407 LVS--------QGC---IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ  474 (529)
Q Consensus       407 l~~--------~~~---l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~  474 (529)
                      +..        ...   ++.+..+|. ..++.+...-+..|...+-.+.           .....++.+...++.|....
T Consensus       458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p-----------~AV~dFL~~~s~l~~L~~~i  526 (651)
T 3grl_A          458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP-----------IAVTHFLHNSANVPFLTGQI  526 (651)
T ss_dssp             HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHSTTHHHHHHHHH
T ss_pred             HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh-----------HHHHHHHcCCchHHHHHHHH
Confidence            332        111   444555554 3456665555555555553332           23566777666777777654


Q ss_pred             -cC-C--CHHHHHHHHHHHHhhCCCCCCC
Q 009665          475 -SH-D--NTEIYEKAVKILETYWVEEDED  499 (529)
Q Consensus       475 -~~-~--~~~v~~~a~~il~~~~~~~~~~  499 (529)
                       ++ .  +.-|+..+.-+|.-+|...+++
T Consensus       527 ~~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          527 AENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence             32 2  2347888888888777765543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.72  E-value=1.6e-15  Score=157.93  Aligned_cols=332  Identities=15%  Similarity=0.161  Sum_probs=246.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      ..++.+++.+.+++..++..+..++..++...  +   ++. .-+++.|.+-|++++ +.+|..|+.+|+++..  ++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~---e~~-~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--P---DMA-IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--H---HHH-HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--c---hHH-HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence            36788999999999999988888888876432  1   111 125678888899888 9999999999999874  5544


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ..+     ++.+..++.++++.+|..|++++++++...++.   +...+.++.+..+| .+.++.++..|+++|..++..
T Consensus       120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            443     578999999999999999999999998755542   22345678888888 688999999999999999987


Q ss_pred             CCCC-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          231 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       231 ~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      .+.. ........++.|+..+...++..+..++.++..++..++...     ..+++.+..++.+.++.|+..|++++..
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6433 233345667788888888899999999999998886544322     2567888889999999999999999999


Q ss_pred             hhcC---ChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHH
Q 009665          310 IVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  386 (529)
Q Consensus       310 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~  386 (529)
                      +...   ++...+.+. ..+.+.|+.++. + ++.+|..|+.+|+.++...++....     .+..+. .+.+++..+|.
T Consensus       266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~  336 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKL  336 (591)
T ss_dssp             SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHH
T ss_pred             HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHH
Confidence            8742   233333333 255677776664 5 8899999999999998744432211     122222 22234588999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      .|++.|.+++...+   +..     +++.|..++++.|.+++..++++|..+....
T Consensus       337 ~al~~L~~l~~~~n---v~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          337 EKLDIMIRLASQAN---IAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             HHHHHHHHTCCSST---HHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCChhh---HHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence            99999999986543   222     4667778888889999999999998887543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.71  E-value=4.8e-16  Score=146.34  Aligned_cols=258  Identities=15%  Similarity=0.165  Sum_probs=202.3

Q ss_pred             hhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009665          111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  190 (529)
Q Consensus       111 i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  190 (529)
                      ...+.++.|+..|.+++ +.++..|+++|+++..  +         +.++.|+.++.++++.+|..++++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            35578999999999988 9999999999999873  2         3578899999999999999999999998744322


Q ss_pred             hHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009665          191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (529)
Q Consensus       191 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~  270 (529)
                      ...      .++.+...+..+.++.++..++++|..+....+    .....+++.|..++.++++.++..++++|+++..
T Consensus        88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111      223333333367789999999999999975431    1234678899999999999999999999998754


Q ss_pred             CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665          271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (529)
Q Consensus       271 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  350 (529)
                                 .+.++.|+.++.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       2578999999999999999999999999854332         3467888999888 899999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHH
Q 009665          351 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVT  429 (529)
Q Consensus       351 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~  429 (529)
                      +++..           ...++.|+..+.+++  ++..|+++|+.+..            ..+++.|..++.. .+++++.
T Consensus       217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~~~~  271 (280)
T 1oyz_A          217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIIT  271 (280)
T ss_dssp             HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHH
T ss_pred             HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcHHHH
Confidence            99862           237888899897644  89999999999843            1467888888864 5677777


Q ss_pred             HHHHHHH
Q 009665          430 VCLEGLE  436 (529)
Q Consensus       430 ~~l~aL~  436 (529)
                      .+..+|.
T Consensus       272 ~~~~~l~  278 (280)
T 1oyz_A          272 SAIDKLK  278 (280)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7777665

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.71  E-value=1.8e-14  Score=144.14  Aligned_cols=368  Identities=16%  Similarity=0.136  Sum_probs=270.6

Q ss_pred             ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC-CChHHHHHHHHHHHHHhcCChh
Q 009665           71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        71 ~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~-~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      +.++.|...+. +.-.+.|..|+..|+.+....     ...+-.++++.|+..|+.+ ++.++...++..|.++...+++
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-----~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-----RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-----TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-----HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            47889999888 556889999999999985322     2334457899999999765 3478888899999887764432


Q ss_pred             -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhc-CChHHHHHHh
Q 009665          149 -----------------NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSN-GALMPLLAQF  208 (529)
Q Consensus       149 -----------------~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-~~i~~l~~~l  208 (529)
                                       ..+.++ +.+.++.|+.+|.+.+..+|..++.+|..++...+. .++.++.. ++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             222333 467899999999999999999999999999977766 77777754 8999999999


Q ss_pred             ccchhHHHHHHHHHHHhhhhcCCCCCchh-hhhchHHHHHHhhccCC----hHHHHHHHHHHHHhccCCchhHHHHHHhC
Q 009665          209 NEHAKLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG  283 (529)
Q Consensus       209 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~ll~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  283 (529)
                       .+....++..++..|..|+.+.+..+.. ...++++.|+.++..+.    ..+..+|+.++.+|...+..+...+.+.|
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             6667888999999999999998444443 45799999999998654    47899999999999999877778889999


Q ss_pred             cHHHHHHhcCCCCcc------hHH---HHHHHHHHhhcCCh------hhHHHHHhcCChHHHHHHhccCC-chhHHHHHH
Q 009665          284 VCPRLVELLRHPSPS------VLI---PALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQNY-KKSIKKEAC  347 (529)
Q Consensus       284 ~~~~L~~lL~~~~~~------v~~---~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~  347 (529)
                      .++.|..++..+...      ...   .++.++.-++..+.      .....+.+.|+++.++.++..+. ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999999754322      222   36777777776532      34556779999999999986542 567999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcC---------CHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHc----C--
Q 009665          348 WTISNITAGNVNQIQAIIEAG---------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ----G--  411 (529)
Q Consensus       348 ~~L~nl~~~~~~~~~~l~~~~---------~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~--  411 (529)
                      .+++.+.++++.....+.+..         ++..|+.++.+. ..++|.+|++++..+..+.. +....+...    .  
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~-~~Q~~i~~~llp~~~~  413 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ-KGQGEIVSTLLPSTID  413 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTSSCCCC
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH-HHHHHHHHhcCCcccc
Confidence            999999999888877777633         233344445443 67899999999999998743 322233321    0  


Q ss_pred             ----Ch---HHHHhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009665          412 ----CI---KPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  445 (529)
Q Consensus       412 ----~l---~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~  445 (529)
                          .+   ..|..-+-+.|+--.--+..+|..++..+...
T Consensus       414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~  454 (651)
T 3grl_A          414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ  454 (651)
T ss_dssp             CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence                01   12334444456533333555677777665443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.71  E-value=4e-15  Score=155.38  Aligned_cols=227  Identities=17%  Similarity=0.114  Sum_probs=154.2

Q ss_pred             hccCCCCchHHHhhhHHHHHHHHHHhhHH-------HHHhhhhhcccCCCCccchhhhhhhhhccHHHHHHhhcCCCHHH
Q 009665           15 KYKVAVDAEEGRRRREDNMVEIRKNKREE-------SLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNI   87 (529)
Q Consensus        15 ~~k~~~~~~e~r~~r~~~~~~lRk~~r~~-------~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~~~   87 (529)
                      ..++..+.+|.+++-.....++|+.=++.       .+.|---..+.....           -.....+++.+.+++...
T Consensus        18 ~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~-----------~~~~~~vik~~~s~~~~~   86 (618)
T 1w63_A           18 TIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA-----------HFGQLECLKLIASQKFTD   86 (618)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC-----------GGGHHHHHHHHHSSSHHH
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC-----------cchHHHHHHHHcCCchHH
Confidence            34444555666666666667777663222       222222111111110           135678888889999999


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC
Q 009665           88 QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS  167 (529)
Q Consensus        88 ~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~  167 (529)
                      +..+...+..++...  +  +.++  -+++.|.+-|.+++ +.++..|+++|+++..  ++...     .+++.+..++.
T Consensus        87 Krl~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L~  152 (618)
T 1w63_A           87 KRIGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLLK  152 (618)
T ss_dssp             HHHHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHHc
Confidence            988888888876432  1  1111  15678888888888 8999999999999985  44332     35688899999


Q ss_pred             CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHH
Q 009665          168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE  247 (529)
Q Consensus       168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~  247 (529)
                      ++++.+|..|+.++++++...++..     .++++.+..++ .+.++.++..++++|..++...+.. ......++|.++
T Consensus       153 ~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~  225 (618)
T 1w63_A          153 TSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLV  225 (618)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHH
Confidence            9999999999999999987655432     14667777777 6788999999999999998764221 223456677777


Q ss_pred             Hhhcc---------------CChHHHHHHHHHHHHhccCCc
Q 009665          248 RLIHS---------------NDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       248 ~ll~~---------------~d~~v~~~a~~~L~~l~~~~~  273 (529)
                      .+|..               .++..+..++.+|..++..++
T Consensus       226 ~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~  266 (618)
T 1w63_A          226 RILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD  266 (618)
T ss_dssp             HHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence            66652               477888888888888876543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.67  E-value=6.2e-15  Score=138.68  Aligned_cols=254  Identities=15%  Similarity=0.120  Sum_probs=200.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      ..++.++..|.++++.++..|+..|..+..            .+.++.|+.+|.+++ +.++..|+++|+.+.... ...
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~-~~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-ccc
Confidence            478999999999999999999999998741            236789999999988 999999999999987522 211


Q ss_pred             HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          151 RVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       151 ~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      ..     +++.|. .++.++++.++..++++|+.+....+....     .+++.++..+ .+.++.++..++++|..+..
T Consensus        89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            11     234444 345678999999999999999743332211     2467888888 77889999999999998754


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                                ...+|.|+.++.++++.|+..++++|+.+.....         .+++.|+.++.++++.++..|+++|++
T Consensus       158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                      2478999999999999999999999999854332         456888999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHH
Q 009665          310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEA  388 (529)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a  388 (529)
                      +..           ...++.|...+.++ +  +|..|+++|+.+..  +         ..+|.|..++.+. ++++...+
T Consensus       219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence            862           25678899999765 3  89999999999854  2         3788999998764 77888888


Q ss_pred             HHHHH
Q 009665          389 AWAIS  393 (529)
Q Consensus       389 ~~aL~  393 (529)
                      ..+|.
T Consensus       274 ~~~l~  278 (280)
T 1oyz_A          274 IDKLK  278 (280)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            77764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.66  E-value=6e-15  Score=161.44  Aligned_cols=354  Identities=14%  Similarity=0.230  Sum_probs=246.7

Q ss_pred             cHHHHHHhhcC-------CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhc
Q 009665           72 SLPAMVAGVWS-------DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  144 (529)
Q Consensus        72 ~l~~l~~~L~s-------~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~  144 (529)
                      .+|.++..+..       ++..++..+...|..+.....    ..++ ..+++.+.+.+.+.+ +.+|..|+++++.++.
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~----~~~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG----NHIL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG----GGGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc----HhHH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence            46677777764       235788888888888764321    1112 236677777888877 8999999999999998


Q ss_pred             CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhccchhHHHHHHH
Q 009665          145 GTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEHAKLSMLRNA  220 (529)
Q Consensus       145 ~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  220 (529)
                      +.. +.....+. .+++.|+..+.++++.+|..++|+++.++......   ...  -..+++.++..+ .+. +.++..+
T Consensus       399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a  473 (861)
T 2bpt_A          399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNC  473 (861)
T ss_dssp             SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHH
Confidence            643 33333332 47889999999999999999999999998432110   011  112466777777 333 7899999


Q ss_pred             HHHHhhhhcCCC----CCchhhhhchHHHHHHhhccCC--hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009665          221 TWTLSNFCRGKP----QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  294 (529)
Q Consensus       221 ~~~L~~l~~~~~----~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  294 (529)
                      +|++.+++....    .........+++.|+..+.+.+  +.++..++.+++.++..........+. .+++.++..+..
T Consensus       474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~  552 (861)
T 2bpt_A          474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ  552 (861)
T ss_dssp             HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence            999999987532    2223455778888889988544  789999999999998665444333333 456666666542


Q ss_pred             ---------------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCch-hHHHHHHHHHHHHhcCCH
Q 009665          295 ---------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNITAGNV  358 (529)
Q Consensus       295 ---------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~  358 (529)
                                     ....++..++.+|++++............ .+++.+...+.+. +. .++..++++++.++....
T Consensus       553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~  630 (861)
T 2bpt_A          553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG  630 (861)
T ss_dssp             HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred             HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence                           13456778999999998755433222222 5677788888777 56 899999999999987422


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC--HHHHHHHHHHHH
Q 009665          359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLE  436 (529)
Q Consensus       359 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~~l~aL~  436 (529)
                      ......+.. ++|.++..+.++++.++..|+.+++.++...+.....++  ..+++.+...+.+.+  ++++..++.++.
T Consensus       631 ~~~~~~l~~-i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~  707 (861)
T 2bpt_A          631 KGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG  707 (861)
T ss_dssp             GGGHHHHHH-HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred             hhHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence            222233332 889999999888889999999999999876543333333  246777788887654  889999999999


Q ss_pred             HHHHhh
Q 009665          437 NILKAG  442 (529)
Q Consensus       437 ~l~~~~  442 (529)
                      .++...
T Consensus       708 ~l~~~~  713 (861)
T 2bpt_A          708 DIASNI  713 (861)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.65  E-value=1.5e-14  Score=158.32  Aligned_cols=401  Identities=12%  Similarity=0.135  Sum_probs=268.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH-H
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-R  151 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~  151 (529)
                      ++.+.+.+.+.+...+..|+.++..++...........+. .+++.|+..+.+++ +.+|..++|+|+.++....... .
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence            4555566678889999999999999885431122222222 47889999999888 9999999999999986311100 0


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhHHHHHhcCChHHHHHHhcc-chhHHHHHHHHHHHh
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLS  225 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~  225 (529)
                      .-.-..+++.++..+.++ +.++..+++++.+++...     ......+  ..+++.++..+.. +.+..++..++.++.
T Consensus       449 ~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          449 QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            000113568888888775 899999999999987431     1122222  1246667777742 334788999999999


Q ss_pred             hhhcCCCCCchhhhhchHHHHHHhhccC---------------ChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH
Q 009665          226 NFCRGKPQPLFEQTRPALPALERLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  290 (529)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~---------------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~  290 (529)
                      .++...+.........++|.++..+...               ...++..++.+|..++............ .+++.++.
T Consensus       526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~  604 (861)
T 2bpt_A          526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred             HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence            9988765444445567777777766521               3457888999999988654432222222 57778888


Q ss_pred             hcCCCCc-chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009665          291 LLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  369 (529)
Q Consensus       291 lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  369 (529)
                      .+.+.+. .++..++.+++.++..........+. .+++.+...+.++ ++.++..++++++.++....+.....+ ..+
T Consensus       605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l  681 (861)
T 2bpt_A          605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred             HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence            8887766 89999999999998754433333333 4788899999776 788999999999999874333333333 237


Q ss_pred             HHHHHHHHhcCC--hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC-----------HHHHHHHHHHHH
Q 009665          370 IGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD-----------PRIVTVCLEGLE  436 (529)
Q Consensus       370 l~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-----------~~v~~~~l~aL~  436 (529)
                      ++.++..+.+.+  +++|..++.+++.++.........++-  .+++.|...+....           ..++..+++++.
T Consensus       682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~  759 (861)
T 2bpt_A          682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            888888888764  889999999999998754444445442  36777887776431           357788888888


Q ss_pred             HHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC----CHHHHHHHHHHHHhhCC
Q 009665          437 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD----NTEIYEKAVKILETYWV  494 (529)
Q Consensus       437 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~----~~~v~~~a~~il~~~~~  494 (529)
                      .++......        ...+...+.  ..++.|.....+.    +.+++..|..++..+..
T Consensus       760 ~i~~~l~~~--------~~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          760 GIVAGLHDK--------PEALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHTTTC--------HHHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccC--------HHHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            887543210        001111111  1244454444342    78999999888887754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.61  E-value=2.2e-14  Score=145.14  Aligned_cols=390  Identities=12%  Similarity=0.106  Sum_probs=267.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      +..++..+.++|...|..|-..|.++....         ..+++..|+.++.+++ ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            556777788999999999999998854210         1246677888887652 388999999999998764311100


Q ss_pred             H-----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch--hHHHHH
Q 009665          152 V-----------VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLR  218 (529)
Q Consensus       152 ~-----------~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~  218 (529)
                      .           -....+-..|+..+.+++..+ ..++.+++.++...... .  .-.+.++.++..+ .+.  ++.++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANV-TNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence            0           001123356777888877778 88999999997432110 0  0124677788888 445  788999


Q ss_pred             HHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccC--ChHHHHHHHHHHHHhccCCchhHH-HHHHhCcHHHHHHhcCC
Q 009665          219 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRH  294 (529)
Q Consensus       219 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~  294 (529)
                      .++.+|..++... +.........+++.+...+.++  ++.++..++++++++...-.+... .....-+++.+...+.+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            9999999999754 2222334467888899999887  789999999999987654221111 01111246667777888


Q ss_pred             CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH---------------
Q 009665          295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN---------------  359 (529)
Q Consensus       295 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---------------  359 (529)
                      +++.++..++.+|+.++..........+...+++.++..+.+. ++.++..|++.++.++.....               
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP  307 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence            8899999999999999876554322222226777778888877 889999999999988753110               


Q ss_pred             ------HHHHHHHcCCHHHHHHHHhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009665          360 ------QIQAIIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  426 (529)
Q Consensus       360 ------~~~~l~~~~~l~~L~~~l~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~  426 (529)
                            .....+ ..++|.++..+..       +++.+|..|+.+|..++.........     .+++.+...+.+.++.
T Consensus       308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~  381 (462)
T 1ibr_B          308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR  381 (462)
T ss_dssp             SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred             cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence                  111111 2367777777753       24579999999999998754422222     3577888889999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       427 v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      ++..++.+|+.+........          +...+  ...++.|..+..++++.|+..|.+.|.++...
T Consensus       382 ~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          382 YRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            99999999998875322100          01111  34577788888899999999999999998754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.61  E-value=4.2e-14  Score=155.02  Aligned_cols=396  Identities=15%  Similarity=0.176  Sum_probs=249.9

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        73 l~~l~~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      ++.+...+.++  +..++..|+.++..++..-............+++.+...+.+++ ++++..++++|..++...+...
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~  252 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHH
Confidence            44566667765  68899999999999875421100111111236777888887777 8999999999999998655554


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch------------------hHHHH--HhcCChHHHHHHhcc
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------------------CRDLV--LSNGALMPLLAQFNE  210 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~------------------~~~~~--~~~~~i~~l~~~l~~  210 (529)
                      ...+...+++.++..+.+.++.++..+++++.+++.....                  .....  .-..+++.++..+..
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~  332 (876)
T 1qgr_A          253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence            4445457889999888888999999999999988743110                  00000  001245566666632


Q ss_pred             ------chhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc-hhHHHHHHhC
Q 009665          211 ------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAG  283 (529)
Q Consensus       211 ------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~  283 (529)
                            +.+..++..+..++..++...+   ......+++.+...+.+.++.++..++++++.++.... +...... ..
T Consensus       333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~  408 (876)
T 1qgr_A          333 QDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQ  408 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HH
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HH
Confidence                  2345788888899988877543   12356778888888888899999999999999997654 3333333 36


Q ss_pred             cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH--HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCH---
Q 009665          284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---  358 (529)
Q Consensus       284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---  358 (529)
                      +++.++..+.++++.++..|++++++++.......  ...+ ..+++.++..+.+  ++.++..++|+|++++....   
T Consensus       409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~  485 (876)
T 1qgr_A          409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAA  485 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhcc
Confidence            88999999999999999999999999997543311  0111 2456777788865  37899999999999985311   


Q ss_pred             -----------HHHHHHHHcCCHHHHHHHHhcC---ChhHH---------------------------------------
Q 009665          359 -----------NQIQAIIEAGIIGPLVNLLLNA---EFEIK---------------------------------------  385 (529)
Q Consensus       359 -----------~~~~~l~~~~~l~~L~~~l~~~---~~~v~---------------------------------------  385 (529)
                                 +.....+ ..+++.|+..+...   +..++                                       
T Consensus       486 ~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~  564 (876)
T 1qgr_A          486 DVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQM  564 (876)
T ss_dssp             SCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence                       0010111 12445555554432   12344                                       


Q ss_pred             -----------------HHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhccCCCC--HHHHHHHHHHHHHHHHhhhhh
Q 009665          386 -----------------KEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGEAE  445 (529)
Q Consensus       386 -----------------~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~~l~aL~~l~~~~~~~  445 (529)
                                       ..+++++..++...+ .....++  ..+++.|..+++...  +.++..++.++..++......
T Consensus       565 ~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~  642 (876)
T 1qgr_A          565 ESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE  642 (876)
T ss_dssp             TTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh
Confidence                             444445555544333 2222222  235677777787654  478889999999988653221


Q ss_pred             hhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhh
Q 009665          446 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETY  492 (529)
Q Consensus       446 ~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~  492 (529)
                              ..+|...     .++.+.....+ .+++++..|...+..+
T Consensus       643 --------~~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l  677 (876)
T 1qgr_A          643 --------FLKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDL  677 (876)
T ss_dssp             --------GGGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence                    1122222     23444444333 3777877776665544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.60  E-value=3e-14  Score=156.22  Aligned_cols=405  Identities=14%  Similarity=0.156  Sum_probs=262.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh---
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN---  149 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~---  149 (529)
                      ++.+...+.+.++.++..|+.++..++............ ..++|.++..+.+++ +.+|..|+|+|++++...+..   
T Consensus       368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~  445 (876)
T 1qgr_A          368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAIN  445 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred             HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhccc
Confidence            455666778889999999999999987543111122222 358899999999888 999999999999999743321   


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---------------hhHHHHHhcCChHHHHHHhccch--
Q 009665          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---------------KCRDLVLSNGALMPLLAQFNEHA--  212 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~~--  212 (529)
                      ...+  ..+++.|+..+.++ +.++..++|+|++++....               .+...+  ..+++.++..+....  
T Consensus       446 ~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~  520 (876)
T 1qgr_A          446 DVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH  520 (876)
T ss_dssp             TTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred             HHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence            1111  24567888888774 8999999999999984311               011111  124566666664321  


Q ss_pred             hHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc-----------CC----hHHHHHHHHHHHHhccCCc-hhH
Q 009665          213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----------ND----DEVLTDACWALSYLSDGTN-DKI  276 (529)
Q Consensus       213 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----------~d----~~v~~~a~~~L~~l~~~~~-~~~  276 (529)
                      +..++..+..++..++...+.........++|.++..+..           .|    ++++..+++++..++.... ...
T Consensus       521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~  600 (876)
T 1qgr_A          521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA  600 (876)
T ss_dssp             STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            3467778888888888876444445566777777766652           22    4567889999999987655 333


Q ss_pred             HHHHHhCcHHHHHHhcCCCC--cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHh
Q 009665          277 QAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  354 (529)
Q Consensus       277 ~~~~~~~~~~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  354 (529)
                      .... ..+++.++.++.+..  +.++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++
T Consensus       601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            3233 267888888888764  468899999999998743322222222 367788888876536789999999999998


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHHhc--CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC--------
Q 009665          355 AGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--------  424 (529)
Q Consensus       355 ~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--------  424 (529)
                      ..........+. .+++.++..+.+  .+.+++..+++++++++.....+...++  ..+++.|...++...        
T Consensus       679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~  755 (876)
T 1qgr_A          679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV  755 (876)
T ss_dssp             HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred             HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence            742222333332 478888888887  3678999999999999864333333333  235666777665432        


Q ss_pred             ---HHHHHHHHHHHHHHHHhhhhhhh--cCCCCccchHHHHHHhhchHHHHHHHhcCC--CHHHHHHHHHHHHhhCC
Q 009665          425 ---PRIVTVCLEGLENILKAGEAEKN--MGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWV  494 (529)
Q Consensus       425 ---~~v~~~~l~aL~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~--~~~v~~~a~~il~~~~~  494 (529)
                         ..++..++.++..++........  ..+.....+|...+     ++.+..+..++  +..++..|..+|..+..
T Consensus       756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~  827 (876)
T 1qgr_A          756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT  827 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence               26788888888888765321100  00000112232222     34455554555  78999999888877654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.60  E-value=2.3e-14  Score=149.67  Aligned_cols=289  Identities=16%  Similarity=0.116  Sum_probs=203.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      -.+..+.+.|+++++.++..|++++.++..    +   .+. ..+++.+..+|.+.+ +.+|..|+.++.++...+++..
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v  177 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM  177 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence            357788888999999999999999999852    1   222 246888999999988 9999999999999998777643


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------------chhHHH
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSM  216 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~  216 (529)
                      .     +.++.+..+|.+.++.++..|+++|+.++..++.....+  ...++.++..|..              ..++-.
T Consensus       178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence            2     678888899999999999999999999997765432222  2467778877742              135667


Q ss_pred             HHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc------cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH
Q 009665          217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  290 (529)
Q Consensus       217 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~  290 (529)
                      +..++.+|..++...+.    ......+.|..++.      +.+..+...+++++..+...+ .    +.. .++..|..
T Consensus       251 q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~-~----l~~-~a~~~L~~  320 (618)
T 1w63_A          251 QVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES-G----LRV-LAINILGR  320 (618)
T ss_dssp             HHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH-H----HHH-HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH-H----HHH-HHHHHHHH
Confidence            77788888888765421    12234444444442      224567888888888765421 1    111 35677777


Q ss_pred             hcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009665          291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII  370 (529)
Q Consensus       291 lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l  370 (529)
                      ++.++++.++..|+.+|+.++...+...    . ...+.++.++.++ +..+|..|..++..++....  +..     ++
T Consensus       321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv  387 (618)
T 1w63_A          321 FLLNNDKNIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM  387 (618)
T ss_dssp             HHTCSSTTTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred             HHhCCCCchHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence            7887788888888888888887544322    1 3456677777777 77888888888888876421  122     34


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665          371 GPLVNLLLNAEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       371 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (529)
                      +.|...+.+.+.+++..++.+|+.++..
T Consensus       388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          388 KELLYFLDSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            5666677777778888888888887763

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.58  E-value=2.5e-13  Score=154.07  Aligned_cols=406  Identities=12%  Similarity=0.145  Sum_probs=271.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .++.++..+.+.|+++|..|...|.+.+.... .....-....+++.|++.|.+.+ +.+|..|+.+|..++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~-~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccc-cCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            47889999999999999999999998775431 11111122346788999998877 999999999999999755441  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh------HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHh
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  225 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  225 (529)
                      .+  ..+++.|+..+.+++..+|..++.+|+.++......      ... .-..+++.++..+..+.+..++..++.++.
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            11  135688888888888899999999999998433211      011 122367888888843567889999999999


Q ss_pred             hhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHH
Q 009665          226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPAL  304 (529)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al  304 (529)
                      .++...+.........+++.+...+.++++.++..++.+++.++....+.   ++ ..+++.++..|.+. +..++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence            99865432222345778888999999889999999999999999765432   22 25677788777554 356788899


Q ss_pred             HHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh------
Q 009665          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------  378 (529)
Q Consensus       305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~------  378 (529)
                      .+++.++..........+ ..+++.++..+.+. ++.+|..+++++..++...++.....+. .+++.++..+.      
T Consensus       236 ~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence            999999875443222112 36788999999887 8899999999999988743322111111 13333333221      


Q ss_pred             -------------------------------cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHH
Q 009665          379 -------------------------------NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI  427 (529)
Q Consensus       379 -------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v  427 (529)
                                                     +..+++|..|+.++..++.........++  ..+++.|...+.+.+..+
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~V  390 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENV  390 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHH
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHH
Confidence                                           11246799999999999875332222332  457888999998889999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhc-CCC------Ccc-chHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          428 VTVCLEGLENILKAGEAEKNM-GNT------GGV-NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       428 ~~~~l~aL~~l~~~~~~~~~~-~~~------~~~-~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      +..++.++..++......... ...      .+. ..+...+  ...++.+.....++++.++..+...+..+...
T Consensus       391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~  464 (1230)
T 1u6g_C          391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVNV  464 (1230)
T ss_dssp             HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            999999998887643210000 000      000 0011111  12355566667788888888887777766543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.58  E-value=1.8e-14  Score=145.88  Aligned_cols=358  Identities=15%  Similarity=0.130  Sum_probs=242.2

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCh----------hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHH
Q 009665           73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPP----------INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT  140 (529)
Q Consensus        73 l~~l~~~L~s~--~~~~~~~a~~~l~~lls~~~~~~----------~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~  140 (529)
                      +..++..+.+.  ++.+|..|+..|++++.....+.          ...-....+-..|+..|.+++ +.+ ..++.++.
T Consensus        37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~  114 (462)
T 1ibr_B           37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVA  114 (462)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHH
Confidence            34455555543  68899999999999885421000          000111224456778888877 778 88999999


Q ss_pred             HHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-chh-HHHHHhcCChHHHHHHhccch-hHH
Q 009665          141 NIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS-PKC-RDLVLSNGALMPLLAQFNEHA-KLS  215 (529)
Q Consensus       141 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~-~~~~~~~~~i~~l~~~l~~~~-~~~  215 (529)
                      .++.......   .-.++++.|+..+.++  ++.+++.++.+|+.++.+. +.. ...+  ..+++.++..+.... +..
T Consensus       115 ~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~  189 (462)
T 1ibr_B          115 GIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNN  189 (462)
T ss_dssp             HHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHH
Confidence            9987321100   0146789999999887  8999999999999998543 211 1111  125667777774332 688


Q ss_pred             HHHHHHHHHhhhhcCCC-C-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC
Q 009665          216 MLRNATWTLSNFCRGKP-Q-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  293 (529)
Q Consensus       216 ~~~~a~~~L~~l~~~~~-~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~  293 (529)
                      ++..+++++.++..... . ........+++.+...+.+.+++++..++++|..++..........+..++++.++..+.
T Consensus       190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (462)
T 1ibr_B          190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (462)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999998764321 0 001111235677777788889999999999999998654433222222266777788888


Q ss_pred             CCCcchHHHHHHHHHHhhcCChh---------------------hHHHHHhcCChHHHHHHhccC------CchhHHHHH
Q 009665          294 HPSPSVLIPALRTVGNIVTGDDM---------------------QTQCIINHQALPCLLDLLTQN------YKKSIKKEA  346 (529)
Q Consensus       294 ~~~~~v~~~al~~L~~l~~~~~~---------------------~~~~~~~~~~l~~L~~lL~~~------~~~~v~~~a  346 (529)
                      +.++.++..|+.+++.++.....                     .....+ ..++|.++..+...      .++.+|..|
T Consensus       270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a  348 (462)
T 1ibr_B          270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHH
Confidence            88899999999999998763200                     010011 23566666666432      146799999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHH
Q 009665          347 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  426 (529)
Q Consensus       347 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~  426 (529)
                      +.+|..++...++   .++. .+++.+...+.+.++.+|..|+.+++.++.+..++.....+ ..+++.++.++.++++.
T Consensus       349 ~~~L~~l~~~~~~---~~~~-~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~  423 (462)
T 1ibr_B          349 GVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV  423 (462)
T ss_dssp             HHHHHHHHHHTTT---THHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence            9999999874332   1222 36778888888889999999999999999865422211111 45789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 009665          427 IVTVCLEGLENILKAGE  443 (529)
Q Consensus       427 v~~~~l~aL~~l~~~~~  443 (529)
                      |+..++++|.++.....
T Consensus       424 Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          424 VRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999987653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.53  E-value=3e-13  Score=153.42  Aligned_cols=398  Identities=12%  Similarity=0.145  Sum_probs=263.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh----hhHHhhcCChHHHHHhhcC-CCChHHHHHHHHHHHHHhcCC
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGT  146 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~----~~~~i~~g~i~~Li~lL~~-~~~~~v~~~a~~~L~~l~~~~  146 (529)
                      .++.++..+.++++.+|..|+.++..++..-....    ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            46677888888888999999999998876432210    1111233588999999984 66 899999999999998522


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665          147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (529)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  226 (529)
                      +...... -..+++.|+..+.+++..+|..|+.+|+.++...+.   .+ -...++.++..+....+..++..++.++..
T Consensus       166 ~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            1111000 123567788888888899999999999999865432   11 223577788777544344567778888888


Q ss_pred             hhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC------------
Q 009665          227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------------  294 (529)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~------------  294 (529)
                      ++...+..-......++|.+...+.+++++++..+++++..++..........+. .+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccc
Confidence            8876433333455789999999999889999999999999988654432222222 345555554431            


Q ss_pred             -------------------------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHH
Q 009665          295 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  349 (529)
Q Consensus       295 -------------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  349 (529)
                                               ..+.++..|+.+++.++...+......+. .+++.+...+.+. +..+|..++.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     12356888999999998754433333443 6778888888777 78999999998


Q ss_pred             HHHHhcC--C-----------------HHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009665          350 ISNITAG--N-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ  410 (529)
Q Consensus       350 L~nl~~~--~-----------------~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  410 (529)
                      +..++..  .                 ......++ ..+++.+...+.+.++.+|..++.+|+.++.........++  .
T Consensus       398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~  474 (1230)
T 1u6g_C          398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--P  474 (1230)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--H
T ss_pred             HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--H
Confidence            8877651  0                 11122222 22567777778888999999999999999875321111121  2


Q ss_pred             CChHHHHhccCCCCH--HHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHH
Q 009665          411 GCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI  488 (529)
Q Consensus       411 ~~l~~L~~lL~~~~~--~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~i  488 (529)
                      .+++.+...|.+..+  .++..++.++..++.....          ..+...+.  ..++.+.....+.+..++..|...
T Consensus       475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~----------~~~~~~l~--~llp~L~~~l~d~~~~v~~~al~~  542 (1230)
T 1u6g_C          475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP----------QVFHPHVQ--ALVPPVVACVGDPFYKITSEALLV  542 (1230)
T ss_dssp             HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG----------GGGHHHHT--TTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH----------HHHHhHHH--HHHHHHHHHHcccchHHHHHHHHH
Confidence            367888888887654  7888888888887753211          11222332  235666666667777777667666


Q ss_pred             HHhhC
Q 009665          489 LETYW  493 (529)
Q Consensus       489 l~~~~  493 (529)
                      +..+.
T Consensus       543 l~~l~  547 (1230)
T 1u6g_C          543 TQQLV  547 (1230)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65444

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.46  E-value=4.3e-12  Score=112.79  Aligned_cols=184  Identities=20%  Similarity=0.237  Sum_probs=157.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCch
Q 009665          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  236 (529)
Q Consensus       157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  236 (529)
                      +..+.++.+|.++++.+|..|+++|+.+..           ...++.|+..+ .+.++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            457889999999999999999999998753           13578899999 67789999999999998743       


Q ss_pred             hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh
Q 009665          237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  316 (529)
Q Consensus       237 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~  316 (529)
                         ...++.|+.++.++++.++..++++|+.+...           ..++.|+.++.++++.++..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               35789999999999999999999999998541           467889999999999999999999999853    


Q ss_pred             hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665          317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (529)
Q Consensus       317 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (529)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .+.         .++.|..++.++++.+|..|..+|.++-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 9999999999999994  233         5678888899999999999999999874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.45  E-value=3.5e-12  Score=114.30  Aligned_cols=188  Identities=20%  Similarity=0.227  Sum_probs=157.9

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCc
Q 009665          156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  235 (529)
Q Consensus       156 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  235 (529)
                      .+.++.|+.+|.+++..+|..++++|+.+..           ...++.|+..+ .+.++.++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            4578999999999999999999999999753           13678899999 67789999999999998753      


Q ss_pred             hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009665          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (529)
Q Consensus       236 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  315 (529)
                          ...++.|+.++.++++.++..++++|+.+..           .+.++.|+.++.++++.++..|+.+|+.+..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                3678999999999999999999999999854           2467889999999999999999999999853   


Q ss_pred             hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (529)
Q Consensus       316 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  395 (529)
                              ...++.|..++.++ ++.+|..|+++|+.+..  +.         .++.|..++.++++.||..|..+|.++
T Consensus       142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                    24678899999888 99999999999999953  22         567888889999999999999999999


Q ss_pred             hcCC
Q 009665          396 TSGG  399 (529)
Q Consensus       396 ~~~~  399 (529)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.44  E-value=2.1e-10  Score=119.39  Aligned_cols=329  Identities=12%  Similarity=0.117  Sum_probs=233.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      .....+++.+.+++...+..+..++..++...  +  +.++-  +++.+.+=|++++ +.++..|+++|+++..  ++..
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA  144 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence            36788999999999999999988888876432  1  11111  4567888888888 9999999999999975  5544


Q ss_pred             HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          151 RVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      ..     +++.+.+++  .+.++.||..|+.++..+....++   .+...+.++.+..+| .+.++.++..++.++..++
T Consensus       145 ~~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          145 EA-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             HH-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence            43     468889999  889999999999999999865543   222247888899998 7789999999999999998


Q ss_pred             cCCCCCchhhhhchHHHHH----HhhccC-------------ChHHHHHHHHHHHHhccCCc-hhHHHHHHhCcHHHHHH
Q 009665          229 RGKPQPLFEQTRPALPALE----RLIHSN-------------DDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVE  290 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~----~ll~~~-------------d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~  290 (529)
                      ...+.    .....+|.++    +++...             ++..+...+..+..++...+ +....+.  +++..++.
T Consensus       216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~  289 (621)
T 2vgl_A          216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILN  289 (621)
T ss_dssp             HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHH
T ss_pred             HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHH
Confidence            86532    1223444444    443321             67899999999998886432 2222222  23444443


Q ss_pred             hcC---------CCCc--chHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Q 009665          291 LLR---------HPSP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  359 (529)
Q Consensus       291 lL~---------~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  359 (529)
                      .+.         +.+.  .+...|+.++..+.. .+....     .++..|..+|.++ ++.+|..|+.+|..++...+.
T Consensus       290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~  362 (621)
T 2vgl_A          290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS  362 (621)
T ss_dssp             HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT
T ss_pred             hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc
Confidence            321         1122  677788888888753 232222     3566788888877 899999999999999986442


Q ss_pred             HHHHHHHcCCHHHHHHHHh-cCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHH
Q 009665          360 QIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  438 (529)
Q Consensus       360 ~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l  438 (529)
                      .  ..+ ....+.++.++. ++|..++..++..|..++.   ...+..     ++..|...+...|.+++..++.++..+
T Consensus       363 ~--~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l  431 (621)
T 2vgl_A          363 H--EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL  431 (621)
T ss_dssp             H--HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             H--HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            1  122 236788888898 8899999999999999975   344444     355666677777888888777777776


Q ss_pred             HHh
Q 009665          439 LKA  441 (529)
Q Consensus       439 ~~~  441 (529)
                      ...
T Consensus       432 a~k  434 (621)
T 2vgl_A          432 AEK  434 (621)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.44  E-value=3.7e-12  Score=114.11  Aligned_cols=188  Identities=21%  Similarity=0.217  Sum_probs=158.4

Q ss_pred             hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009665          112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  191 (529)
Q Consensus       112 ~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  191 (529)
                      ..+.++.|+.+|.+++ +.++..|++.|+.+..           .+.++.|+.++.++++.++..++++|+.+..     
T Consensus        17 ~~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred             CHhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence            3467899999999888 9999999999998764           2568999999999999999999999999852     


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~  271 (529)
                            .+.++.|+..+ .+.++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+.. 
T Consensus        80 ------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 ------ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             ------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred             ------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence                  13578888888 77889999999999998853          3578999999999999999999999999853 


Q ss_pred             CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                                ...++.|..++.++++.++..|+.+|+.+..           ...++.|..++.++ ++.+|..|..+|.
T Consensus       142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~  199 (211)
T 3ltm_A          142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLE  199 (211)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence                      1467889999999999999999999999853           13567788899888 8999999999999


Q ss_pred             HHhcC
Q 009665          352 NITAG  356 (529)
Q Consensus       352 nl~~~  356 (529)
                      ++...
T Consensus       200 ~~~~~  204 (211)
T 3ltm_A          200 THKSF  204 (211)
T ss_dssp             C----
T ss_pred             hcCCC
Confidence            98774

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.42  E-value=5.1e-12  Score=112.30  Aligned_cols=186  Identities=22%  Similarity=0.234  Sum_probs=158.7

Q ss_pred             hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009665          112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  191 (529)
Q Consensus       112 ~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  191 (529)
                      ..+..+.++++|.+++ +.++..|+++|+.+..           .+.++.|+.+|.++++.++..++++|+.+...    
T Consensus        12 ~~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~----   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE----   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred             CCcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----
Confidence            3457789999999999 9999999999998764           24689999999999999999999999998521    


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~  271 (529)
                             ..++.++..+ .+.++.++..++++|..+..          ...++.|..++.++++.|+..++++|+.+.. 
T Consensus        76 -------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           76 -------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred             -------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence                   3578888888 67889999999999998743          3578899999999999999999999999853 


Q ss_pred             CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       272 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                                ...++.|..++.++++.++..|+.+|+.+..  +         ..++.|..++.++ ++.+|..|.++|.
T Consensus       137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~  194 (201)
T 3ltj_A          137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLE  194 (201)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence                      2567889999999999999999999999842  2         3567888889888 8999999999999


Q ss_pred             HHh
Q 009665          352 NIT  354 (529)
Q Consensus       352 nl~  354 (529)
                      .+.
T Consensus       195 ~l~  197 (201)
T 3ltj_A          195 THK  197 (201)
T ss_dssp             HCC
T ss_pred             HHH
Confidence            874

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.36  E-value=2.6e-11  Score=126.15  Aligned_cols=367  Identities=12%  Similarity=0.126  Sum_probs=240.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhh--cCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL--SRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL--~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      .+..+.+.|+++++.++-.|++++.++..    +   .+.+ .+++.+.++|  .+.+ +.+|..|+.++..+...+|+.
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~---e~~~-~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS----R---EMAE-AFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----H---HHHH-HHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC----H---HHHH-HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence            45677778889999999999999999742    1   2222 4678888998  7777 999999999999999866654


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc----c--c----------hh
Q 009665          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----E--H----------AK  213 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~----~--~----------~~  213 (529)
                      ..   ..+.++.+..+|.+.++.++..|+.++..++..++..   +  ...++.++..|.    .  .          .+
T Consensus       183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence            32   2478999999999999999999999999998765431   1  123444444332    1  1          14


Q ss_pred             HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh---------ccCC--hHHHHHHHHHHHHhccCCchhHHHHHHh
Q 009665          214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA  282 (529)
Q Consensus       214 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll---------~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~  282 (529)
                      +=.+..++..+..++............++++.++..+         ++.+  ..|...++.++..+... .+    +.. 
T Consensus       255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~----~~~-  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PN----LLV-  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HH----HHH-
T ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HH----HHH-
Confidence            5677777777777765321111112223444444322         1122  37888899999888632 22    222 


Q ss_pred             CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHH
Q 009665          283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQI  361 (529)
Q Consensus       283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~  361 (529)
                      .++..|..+|.+.++.++..++.+|..++...+. .. .+. .....++..|. ++ +..+|..++.++..++.  +.++
T Consensus       329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv  402 (621)
T 2vgl_A          329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-THIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA  402 (621)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence            4567888999888999999999999999986542 11 222 46778888888 77 89999999999999984  4444


Q ss_pred             HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       362 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      ..     ++..|...+...+.+++..++.+++.++..-.+.. .     -++..|++++......+...+...+..++..
T Consensus       403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~-----~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~  471 (621)
T 2vgl_A          403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-T-----WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN  471 (621)
T ss_dssp             HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-H-----HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred             HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence            43     45567888888899999999999999875311111 1     1355666666644433444445555555544


Q ss_pred             hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHHhhCC
Q 009665          442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWV  494 (529)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~~~  494 (529)
                      .+..+.         +  .+.     ..++.+... ....+...|.|++..|-+
T Consensus       472 ~~~~~~---------~--~~~-----~l~~~l~~~~~~~~li~~~~wilGEy~~  509 (621)
T 2vgl_A          472 RDDVQG---------Y--AAK-----TVFEALQAPACHENLVKVGGYILGEFGN  509 (621)
T ss_dssp             GCSCHH---------H--HHH-----HHHHHHTSSSCCHHHHHHHHHHHHHHTH
T ss_pred             ChhHHH---------H--HHH-----HHHHHHcCccchHHHHHHHHHHhcchHH
Confidence            332210         1  111     112233322 234566777899998854

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.14  E-value=2.8e-09  Score=112.19  Aligned_cols=275  Identities=14%  Similarity=0.135  Sum_probs=193.1

Q ss_pred             cHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-------ChHHHHHHHHHHHH
Q 009665           72 SLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTN  141 (529)
Q Consensus        72 ~l~~l~~~L~---s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-------~~~v~~~a~~~L~~  141 (529)
                      ++..+-..|.   ++++.++.-|+..|.-+-.+..    ..     ++..|...|.+++       .+.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4556666666   6678888888888888765532    11     4566777776543       26788899999999


Q ss_pred             HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHH
Q 009665          142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  221 (529)
Q Consensus       142 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~  221 (529)
                      +..++...       .+++.|...+...+..+++.|+.+||-+...... .      .++..|+..+..+.+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHH
Confidence            87654321       2357788888777777888999999988533321 1      13566777665566778999999


Q ss_pred             HHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc-CCCCcch
Q 009665          222 WTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSV  299 (529)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v  299 (529)
                      .+|..+..+.        ...++.++..|. +.++.++..++.+++--..+..+.       ..++.|+..+ .+.+..+
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~V  594 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDV  594 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHH
Confidence            9999887665        345566666665 568888888888776433332221       2234444443 4567789


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009665          300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  379 (529)
Q Consensus       300 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~  379 (529)
                      +..|+..||.+..++++         .++.++..|.+..++.+|..|+++|+.++.+++...       ++..|..+..+
T Consensus       595 RraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~-------aid~L~~L~~D  658 (963)
T 4ady_A          595 RRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS-------AIDVLDPLTKD  658 (963)
T ss_dssp             HHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH-------HHHHHHHHHTC
T ss_pred             HHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH-------HHHHHHHHccC
Confidence            99999999999887652         345566655444499999999999999999765321       56677777888


Q ss_pred             CChhHHHHHHHHHHHHhcCCC
Q 009665          380 AEFEIKKEAAWAISNATSGGS  400 (529)
Q Consensus       380 ~~~~v~~~a~~aL~nl~~~~~  400 (529)
                      .+..|+..|+.+|+.+..+.+
T Consensus       659 ~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          659 PVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             SSHHHHHHHHHHHHHHSTTCC
T ss_pred             CCHHHHHHHHHHHHHHhcCCc
Confidence            899999999999999987644

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.14  E-value=6.2e-09  Score=85.52  Aligned_cols=218  Identities=14%  Similarity=0.182  Sum_probs=176.1

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCC
Q 009665          155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  234 (529)
Q Consensus       155 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  234 (529)
                      +..++..++.+|...-+.++.+|+..+.+++..-++..+-     .+..|+.++..+...........++..++.-.|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            4457888999999888999999999999999887775444     356777888777788888888889998887653  


Q ss_pred             chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 009665          235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  314 (529)
Q Consensus       235 ~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~  314 (529)
                        ..+.+++|.+..-..-.|+.++.+..++|..++...+....     +++.-+..++.+++..-+..|+..++.+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              45578888888888889999999999999999987765544     56677889999988888888999998887655


Q ss_pred             hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHH
Q 009665          315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  394 (529)
Q Consensus       315 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~n  394 (529)
                      ....     ...+|.|..+|.+. +.-||..|+.+|.+++..++..+..+.      .-+.-+++.+..+++....+|+.
T Consensus       176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence            4333     25789999999998 999999999999999998888554333      33555777788899999999988


Q ss_pred             HhcC
Q 009665          395 ATSG  398 (529)
Q Consensus       395 l~~~  398 (529)
                      ++.-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8653

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.12  E-value=1.6e-09  Score=114.28  Aligned_cols=216  Identities=16%  Similarity=0.121  Sum_probs=155.9

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-Cchh
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGD-SPKC  191 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~  191 (529)
                      .++| +++.|++++ +..|..|+++|++|+. ++..+..+...|+|..+ ..+|.+++.++|+.|+++|.||+.+ .+..
T Consensus        35 ~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           35 KILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             TTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            4555 557789988 9999999999999997 78888888888888765 4578889999999999999999954 4677


Q ss_pred             HHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC
Q 009665          192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  271 (529)
Q Consensus       192 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~  271 (529)
                      ...+...|++++|..++.. .        ...+..+........ ......+           .++...++.+|.+|+..
T Consensus       112 ~~~l~~~~il~~L~~~l~~-~--------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~  170 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKA-V--------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALA  170 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHH-H--------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHh-h--------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhC
Confidence            8889999999999999832 1        112222211110000 0001111           23445677788888887


Q ss_pred             CchhHHHHHHhCcHHHHHHhcCCC---CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh--ccCCchhHHHHH
Q 009665          272 TNDKIQAVIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEA  346 (529)
Q Consensus       272 ~~~~~~~~~~~~~~~~L~~lL~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a  346 (529)
                      +++....+...+.++.|+.+|.+.   ...++..|+.+|..++..++...+.+.+.+....+..++  ... +...+..+
T Consensus       171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la  249 (684)
T 4gmo_A          171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMA  249 (684)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHH
T ss_pred             CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHH
Confidence            777777788889999999988442   346899999999999999998888888766544333332  233 34567889


Q ss_pred             HHHHHHHh
Q 009665          347 CWTISNIT  354 (529)
Q Consensus       347 ~~~L~nl~  354 (529)
                      +++|.|+.
T Consensus       250 ~giL~Ni~  257 (684)
T 4gmo_A          250 CGVLHNVF  257 (684)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhHh
Confidence            99999975

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.02  E-value=1.1e-08  Score=87.93  Aligned_cols=226  Identities=17%  Similarity=0.168  Sum_probs=171.6

Q ss_pred             hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHH
Q 009665          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  319 (529)
Q Consensus       240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~  319 (529)
                      .+.+..|..++...|+.++..++.+|..+....++......-..+++.++.++.+.+..+...|++||+.+..+.+-...
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45778899999999999999999999999876544444444448899999999999999999999999999987653333


Q ss_pred             HHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       320 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      .+.  .+...+..++.++ ++-++.+|+-.++-+--.++.-       +++..+.+++.+.+.+++..+..++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            222  3567788888877 8889999999999884322111       25677888888889999999999999999854


Q ss_pred             C-HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCC
Q 009665          400 S-NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHD  477 (529)
Q Consensus       400 ~-~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~  477 (529)
                      . ++.     -.+++.-+-.+|++.|+.++..++.++..++...-.         .|..-..   .+......+|. -..
T Consensus       182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~---------~~~~~~~---~~~~~~v~~l~~~~~  244 (265)
T 3b2a_A          182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL---------ENVKIEL---LKISRIVDGLVYREG  244 (265)
T ss_dssp             SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC---------SCCHHHH---HHHHHHHHHGGGCSS
T ss_pred             CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc---------HhHHHHH---HHHHHHHHHHHHhcC
Confidence            2 222     134677788899999999999999999999876321         1222222   23455667776 667


Q ss_pred             CHHHHHHHHHHHHhh
Q 009665          478 NTEIYEKAVKILETY  492 (529)
Q Consensus       478 ~~~v~~~a~~il~~~  492 (529)
                      .|.++.+|..+-+..
T Consensus       245 ~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          245 APIIRLKAKKVSDLI  259 (265)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH
Confidence            889999997766543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.99  E-value=3.9e-08  Score=93.31  Aligned_cols=277  Identities=14%  Similarity=0.066  Sum_probs=166.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+..+++.+.++|..++.-....+..+.... +    +++  =++..|.+=+++++ +-+|-.|+++|++|..  ++...
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~----e~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-E----DVI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-S----CGG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-H----HHH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence            4677788999999999998888888766431 2    222  25678889999998 9999999999999997  44444


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      .     +.+.+.+.|.+.++.||..|+.+...+....|+..     .+++..+-.++ .+.++.++.+++.++..++..+
T Consensus       139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence            3     34778889999999999999999999998876532     25788888888 7778899999999999998753


Q ss_pred             CCCchhhhhchHHHHHHhhccC---ChHHHHHHHHHHHHhccCC-chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665          232 PQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (529)
Q Consensus       232 ~~~~~~~~~~~l~~L~~ll~~~---d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L  307 (529)
                              ...+..++..+...   ++..+...++.+..++..+ +.     ....+++.+..+|++.++.|...|++++
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                    12344455544432   5666666666666665543 22     1236778888889999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHH
Q 009665          308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  387 (529)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~  387 (529)
                      ..+......    .. ..++..+..++.++ ++.+|-.|+..|..+....|...+.     .-..+.+++.+++..+...
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence            887552221    11 24567788888888 8999999999999998876665432     3445677788887777666


Q ss_pred             HHHHHH
Q 009665          388 AAWAIS  393 (529)
Q Consensus       388 a~~aL~  393 (529)
                      |+..|.
T Consensus       344 Aittll  349 (355)
T 3tjz_B          344 AITTLL  349 (355)
T ss_dssp             ------
T ss_pred             HHHHhh
Confidence            655543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.91  E-value=3.5e-07  Score=96.42  Aligned_cols=270  Identities=13%  Similarity=0.131  Sum_probs=185.2

Q ss_pred             ChHHHHHhhc---CCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 009665          115 VVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALGN  183 (529)
Q Consensus       115 ~i~~Li~lL~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~n  183 (529)
                      ++..|-+.|.   +++ +.++.-|+..|+-+..+...   .     ++..|...|.+++        +.++..|+..||-
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~---~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR---D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH---H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH---H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4566666665   444 88999999999999986542   1     3577777776544        6789899999999


Q ss_pred             hhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh-ccCChHHHHHHH
Q 009665          184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDAC  262 (529)
Q Consensus       184 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll-~~~d~~v~~~a~  262 (529)
                      +...+..  +.     ++..|...+. +.+..+...++.+|..+..+...      ..++..|+..+ .+.++.++..++
T Consensus       464 a~~GS~~--ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSAN--IE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCC--HH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCC--HH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence            8644321  11     3566777773 33345556777777766444311      23444455443 355788999999


Q ss_pred             HHHHHhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchh
Q 009665          263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  341 (529)
Q Consensus       263 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  341 (529)
                      .+|+.+.-+..+.         ++.+++.|. +.++.++..++.+++-...++...       ..++.|+..+.+..+..
T Consensus       530 lgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            9999887666543         345555553 567788888888887655544322       12444444443333788


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-hcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhcc
Q 009665          342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  420 (529)
Q Consensus       342 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  420 (529)
                      +|..|+.+|+.++.++++         .++.++..+ .+.++.+|..|++||+.+..+....        .+++.|..++
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence            999999999999887653         566677655 4569999999999999998653311        2466788888


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 009665          421 NCPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       421 ~~~~~~v~~~~l~aL~~l~~  440 (529)
                      ++.+..|+..++.+|+.+..
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHST
T ss_pred             cCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999997753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.90  E-value=3.4e-07  Score=75.33  Aligned_cols=217  Identities=17%  Similarity=0.203  Sum_probs=167.1

Q ss_pred             hhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 009665          111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP  189 (529)
Q Consensus       111 i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~  189 (529)
                      ++..++..++.+|.++- ..++..|+.++..++..-++....++     ..|+-+++ ++...+......++|.++...|
T Consensus        29 ~d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P  102 (253)
T 2db0_A           29 YDESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP  102 (253)
T ss_dssp             HCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             hhHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence            45568889999998887 89999999999999997777766554     55666654 4667777778899999997776


Q ss_pred             hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhc
Q 009665          190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  269 (529)
Q Consensus       190 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~  269 (529)
                      +.-.     +.++.+..-. .-.++.++.+..++|..+++..|    ....+++.-+..++.++|..=+..++..++.+.
T Consensus       103 e~v~-----~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          103 ELVK-----SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             HHHH-----HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             HHHH-----hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            5322     2344454444 34589999999999999988753    344667778888999888877888888888887


Q ss_pred             cCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHH
Q 009665          270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  349 (529)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  349 (529)
                      .+......     -.+|+|..+|.+.+.-++..|..+|++++..++..+..+      ...+.-+.+. +..+.+.....
T Consensus       173 en~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~-S~lv~~~V~eg  240 (253)
T 2db0_A          173 ENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDT-SSLVNKTVKEG  240 (253)
T ss_dssp             TTTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCS-CHHHHHHHHHH
T ss_pred             ccCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCc-HHHHHHHHHHH
Confidence            76544333     678999999999999999999999999999998766433      3356667777 77888888888


Q ss_pred             HHHHhc
Q 009665          350 ISNITA  355 (529)
Q Consensus       350 L~nl~~  355 (529)
                      |+.++.
T Consensus       241 L~rl~l  246 (253)
T 2db0_A          241 ISRLLL  246 (253)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887765

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.90  E-value=6.2e-09  Score=109.72  Aligned_cols=197  Identities=14%  Similarity=0.087  Sum_probs=148.3

Q ss_pred             hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHH-HHhcCCCCcchHHHHHHHHHHhhcC-Chhh
Q 009665          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLRHPSPSVLIPALRTVGNIVTG-DDMQ  317 (529)
Q Consensus       240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L-~~lL~~~~~~v~~~al~~L~~l~~~-~~~~  317 (529)
                      ..++| +++.|+++++..+..||++|++|+.. +.....+...+++..+ ..+|.+++..|+..|+++|+||+.. ....
T Consensus        34 ~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            34555 44668999999999999999999974 4455667777888765 5578899999999999999999864 3566


Q ss_pred             HHHHHhcCChHHHHHHhccCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009665          318 TQCIINHQALPCLLDLLTQNY-------------K-------KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  377 (529)
Q Consensus       318 ~~~~~~~~~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l  377 (529)
                      +..++..++++.|..++....             .       ..+...++++|.+++.++.+....+...+.++.|+..|
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            777889999999999885320             0       12344677888999988888888888888999999988


Q ss_pred             hcC---ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH---HHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665          378 LNA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK---PLCDLLNCPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       378 ~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~---~L~~lL~~~~~~v~~~~l~aL~~l~~  440 (529)
                      .+.   ..+++..|+.+|..++.. +++....+.+.+...   .+..+.+..++ .+..+++.|.|++.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~  258 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence            653   457999999999999986 557777777766533   33333333333 35567788888864

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.80  E-value=2.8e-08  Score=90.76  Aligned_cols=187  Identities=14%  Similarity=0.218  Sum_probs=144.2

Q ss_pred             HHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009665          202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI  280 (529)
Q Consensus       202 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  280 (529)
                      +.+...+ .+.+...+..++..|..++.+.+.........+++.|...+. +.+..++..++.++..++..-.......+
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3466777 678899999999999999876322212223577888999995 88999999999999999965333333333


Q ss_pred             HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHH
Q 009665          281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN  359 (529)
Q Consensus       281 ~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  359 (529)
                      . .+++.++..+.+.+..++..|..+|..++....  ..     .+++.+...+.+. ++.+|..++..|+.+... .++
T Consensus        97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence            3 688999999999999999999999999987543  11     3678889999988 999999999999997653 333


Q ss_pred             H-HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          360 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       360 ~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                      . ....+. .++|.|..++.+.++++|..|..+++.++...
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            2 122233 48999999999999999999999999998643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.80  E-value=8.4e-09  Score=94.20  Aligned_cols=189  Identities=16%  Similarity=0.145  Sum_probs=142.5

Q ss_pred             hHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhhHHH
Q 009665          242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQC  320 (529)
Q Consensus       242 ~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~  320 (529)
                      +-+.+...+.+.+...+..++..|..++...+....... ..+++.|...+. +.+..++..|+.+++.++..-......
T Consensus        16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            334577888899999999999999998865211110001 145777888884 889999999999999999643332222


Q ss_pred             HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCC
Q 009665          321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  400 (529)
Q Consensus       321 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  400 (529)
                      .. ..+++.++..+.+. +..+|..|+.+|.+++...+-       ..+++.+...+.+.++.+|..++..|..++....
T Consensus        95 ~~-~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           95 YA-SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             HH-HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            22 25789999999988 899999999999999875321       1267888999999999999999999999765543


Q ss_pred             HH--HHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          401 NE--QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       401 ~~--~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      ++  ...++-  .+++.|..++.+.+++++..+..++..+...-
T Consensus       166 ~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          166 PTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            32  123332  47899999999999999999999999887543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.78  E-value=1.9e-06  Score=83.44  Aligned_cols=322  Identities=13%  Similarity=0.122  Sum_probs=196.2

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCCh-HHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          156 HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP---KCRDLVLSNGAL-MPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       156 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~i-~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ..++..++.+|.. ...++....+..+.-+..+++   .....+.+..-. ..+........+.-....++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            3566788888875 778899999988988887766   333333333222 11333222344555556666666666544


Q ss_pred             CCCCchhhhhchHH--HHHHhhccC-ChHHHHHHHHHHHHhccCCchhHHHHHHh--CcHHHHHHhcC----CC------
Q 009665          231 KPQPLFEQTRPALP--ALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLR----HP------  295 (529)
Q Consensus       231 ~~~~~~~~~~~~l~--~L~~ll~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~lL~----~~------  295 (529)
                      .+. .......++.  .+...|... +.+.+.-++.++..|...+.. ...+.+.  ..++.++.++.    +.      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322 2333334444  445555542 345566677788877766543 3444433  24566654432    11      


Q ss_pred             -------CcchHHHHHHHHHHhhcCChhhHHHHHhcCCh--HHHHHHhccCCchhHHHHHHHHHHHHhcCCH----HHHH
Q 009665          296 -------SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL--PCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQIQ  362 (529)
Q Consensus       296 -------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~  362 (529)
                             ...++..++.|++-++.. +.....+...++.  +.|+.+++.....++-+-++.++.|+....+    ....
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   134567889999988874 4455555555543  5666777765578899999999999998542    2233


Q ss_pred             H-HHHcCCHHHHHHHHhcC---ChhHHHHHHHHHHHHhc---CC-----------------CH---------HHHHHHHH
Q 009665          363 A-IIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATS---GG-----------------SN---------EQIKFLVS  409 (529)
Q Consensus       363 ~-l~~~~~l~~L~~~l~~~---~~~v~~~a~~aL~nl~~---~~-----------------~~---------~~~~~l~~  409 (529)
                      . ++..++ +.++..|...   |+++....-.....+-.   .-                 +|         ++...|.+
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence            2 333444 4566666653   76766543333222211   00                 11         11112222


Q ss_pred             c--CChHHHHhccCC----------CCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC
Q 009665          410 Q--GCIKPLCDLLNC----------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD  477 (529)
Q Consensus       410 ~--~~l~~L~~lL~~----------~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~  477 (529)
                      +  .+++.|+.+|++          .|+.+...++.=|+.+++..+.            .+..+++.|+-+.+-.|+.|+
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~------------gr~i~~~lg~K~~VM~Lm~h~  459 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE------------SIDVLDKTGGKADIMELLNHS  459 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT------------HHHHHHHHSHHHHHHHHTSCS
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc------------hhHHHHHcCcHHHHHHHhcCC
Confidence            2  237888888873          3677888889889988887653            267888999999999999999


Q ss_pred             CHHHHHHHHHHHHhhC
Q 009665          478 NTEIYEKAVKILETYW  493 (529)
Q Consensus       478 ~~~v~~~a~~il~~~~  493 (529)
                      |++|+..|...++++.
T Consensus       460 d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          460 DSRVKYEALKATQAII  475 (480)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999998888763

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.72  E-value=9e-08  Score=90.79  Aligned_cols=243  Identities=14%  Similarity=0.091  Sum_probs=138.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      -....+.+.++++++-++-.|++.+.++...+   -.+     .+.+.+.+.|.+.+ |-++..|+.+...+....|+..
T Consensus       104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~---m~~-----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v  174 (355)
T 3tjz_B          104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDST---MLQ-----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVV  174 (355)
T ss_dssp             GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT---THH-----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH---HHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHH
Confidence            35788888999999999999999999987432   122     35677888999998 9999999999999998777753


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch--hHHHHHHHHHHHhhhh
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFC  228 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~  228 (529)
                      .     +.++.+..++.+.++-++.+|+.+|..+...+..         .+..++..+....  ++-.+...+..+..++
T Consensus       175 ~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~  240 (355)
T 3tjz_B          175 K-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQL  240 (355)
T ss_dssp             H-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-
T ss_pred             H-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhc
Confidence            2     5789999999999999999999999999865431         2344555553321  3333334444444444


Q ss_pred             cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHH
Q 009665          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  308 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~  308 (529)
                      ...   ........++.+...|++.++.|...|+.++..+...+..    .. ..++..|..++.++++.++..|++.|.
T Consensus       241 ~~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~  312 (355)
T 3tjz_B          241 EDE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLN  312 (355)
T ss_dssp             -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred             ccc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            432   0123356777888888999999999999999998663322    11 244566777888899999999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665          309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (529)
Q Consensus       309 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  350 (529)
                      .++...+...+     ..-.-+..++.++ +..+.-.|.-+|
T Consensus       313 ~l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl  348 (355)
T 3tjz_B          313 KVAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL  348 (355)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence            99987765443     2334577788777 766655554443

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.69  E-value=3e-07  Score=79.17  Aligned_cols=185  Identities=17%  Similarity=0.178  Sum_probs=146.4

Q ss_pred             CcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC---CHH
Q 009665          283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVN  359 (529)
Q Consensus       283 ~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~  359 (529)
                      +.+..|..+|.+.++.++..++.+|..+...-+.......-..+++.++.++.+. +..+...|..++..+..+   +++
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHH
Confidence            5678899999999999999999999999986444444444347899999999998 999999999999999985   344


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       360 ~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      +...     +...|.+++.+++.-++.+|+..++.+-....   .     .+++..+.+++++.|++++.+++.++.++.
T Consensus       112 ~y~K-----l~~aL~dlik~~~~il~~eaae~Lgklkv~~~---~-----~~V~~~l~sLl~Skd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          112 TFLK-----AAKTLVSLLESPDDMMRIETIDVLSKLQPLED---S-----KLVRTYINELVVSPDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             HHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC---C-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred             HHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc---h-----HHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence            4332     45678889999999999999999999933221   1     135677888899999999999999999998


Q ss_pred             HhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q 009665          440 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  496 (529)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~  496 (529)
                      ........         +      .+.++-+..+..++++.+.++|..+++..++..
T Consensus       179 ~~S~D~~i---------~------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          179 NSSADSGH---------L------TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             GGCSSCCC---------G------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cccCCHHH---------H------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            76543211         1      233455788899999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.60  E-value=7e-06  Score=87.77  Aligned_cols=304  Identities=13%  Similarity=0.162  Sum_probs=215.1

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC---
Q 009665           70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---  146 (529)
Q Consensus        70 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~---  146 (529)
                      ...+..+++.+...+...+..++..+..++......   ..+..+++..|.+.+.+.. ..  +.|+.++..++...   
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~   86 (986)
T 2iw3_A           13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLS   86 (986)
T ss_dssp             HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCC
T ss_pred             HHHHHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCC
Confidence            345666777777655666678888888887643111   1122367888888888765 33  88999999999533   


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665          147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (529)
Q Consensus       147 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  226 (529)
                      +..--.++  +.+|.++..+.+....++..|..++..++..-+...  +  ..+++.|+..+........+..++.++..
T Consensus        87 ~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~  160 (986)
T 2iw3_A           87 PSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSA  160 (986)
T ss_dssp             TTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             CCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            12222333  678999999988888999998888888774332211  1  23588888888545568889999999999


Q ss_pred             hhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC-CchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHH
Q 009665          227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  305 (529)
Q Consensus       227 l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~  305 (529)
                      |+...+......+..++|.+...+.+..++|...+..++..+|.. .+.-+.     ..+|.|+..+.+++.  ...++.
T Consensus       161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~  233 (986)
T 2iw3_A          161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVH  233 (986)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHH
T ss_pred             HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHH
Confidence            998654444455688999999999999999999988888887742 112222     678999999988753  555666


Q ss_pred             HHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcC-Ch
Q 009665          306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EF  382 (529)
Q Consensus       306 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~-~~  382 (529)
                      .|+.-+.-.... ...+. =..|.|..-|... ...+++.++-++.|+|.  .+|.....++.. ++|.|-...+.- +|
T Consensus       234 ~l~~~tfv~~v~-~~~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~p  309 (986)
T 2iw3_A          234 LLGATTFVAEVT-PATLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADP  309 (986)
T ss_dssp             HHTTCCCCSCCC-HHHHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSH
T ss_pred             HhhcCeeEeeec-chhHH-HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCH
Confidence            666544322211 11111 2457777888777 77889999999999998  567777776654 888888877764 99


Q ss_pred             hHHHHHHHHHHHHh
Q 009665          383 EIKKEAAWAISNAT  396 (529)
Q Consensus       383 ~v~~~a~~aL~nl~  396 (529)
                      ++|..|..|+..+.
T Consensus       310 e~r~~~~~a~~~l~  323 (986)
T 2iw3_A          310 EAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888888774

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.59  E-value=2.9e-07  Score=83.91  Aligned_cols=193  Identities=11%  Similarity=0.120  Sum_probs=141.7

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchhHHHHHh-cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC-CCch-
Q 009665          161 IFVRLLSSPTDDVREQAVWALGN-VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLF-  236 (529)
Q Consensus       161 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~-  236 (529)
                      .+...+.+.++.-|..++..|.. ++...+.......+ ..++..|...+..+.+..++..++.++..|+.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            45667788999999999999999 87443322100000 12355666666556788899999999999997543 3333 


Q ss_pred             hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHH-HHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009665          237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV-IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (529)
Q Consensus       237 ~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  315 (529)
                      .+...++|.++..+.+..+.|+..+..++..++...+.....- .+ .+++.|+..|.+.++.++..++.+|+.++....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            5667899999999999899999998888888876432110000 11 367788899999999999999999999997554


Q ss_pred             h---hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          316 M---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       316 ~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      .   .....+...++|.+..++.++ ++.+|..|..+++.++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            2   222334247999999999998 99999999999999875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.58  E-value=5.8e-07  Score=81.89  Aligned_cols=191  Identities=10%  Similarity=0.085  Sum_probs=140.3

Q ss_pred             HHHHhccchhHHHHHHHHHHHhh-hhcCCCCCc--hhhhhchHHHHHHhh-ccCChHHHHHHHHHHHHhccCCc-hhHH-
Q 009665          204 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ-  277 (529)
Q Consensus       204 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~l~~L~~ll-~~~d~~v~~~a~~~L~~l~~~~~-~~~~-  277 (529)
                      +...+ .+.+..-+..++..|.. ++.+.+...  ......++..|.+.+ .+.+..++..++.+|+.++.+-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            44555 67788889999999999 876543322  222346788888999 68899999999999999985432 2222 


Q ss_pred             HHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Q 009665          278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  357 (529)
Q Consensus       278 ~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  357 (529)
                      .... .+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            2222 4789999999998899999988888888874421110000013577888899998 8999999999999988743


Q ss_pred             H---HHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 009665          358 V---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  397 (529)
Q Consensus       358 ~---~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  397 (529)
                      +   ......+...++|.|..++.+.+..||..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3   444444424599999999999999999999999999875

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.56  E-value=1.2e-08  Score=83.19  Aligned_cols=120  Identities=17%  Similarity=0.165  Sum_probs=92.2

Q ss_pred             hCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 009665          282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  361 (529)
Q Consensus       282 ~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  361 (529)
                      ...++.+..+|.++++.++..|+++|+.+..  .          .++.|..+|.++ ++.+|..|+|+|+++..  +.  
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~--   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER--   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence            3667889999999999999999999987643  1          258889999988 99999999999999863  22  


Q ss_pred             HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHH
Q 009665          362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  437 (529)
Q Consensus       362 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~  437 (529)
                             .++.|+..+.++++.||..|+++|+++..   +         ..++.|..+++++++.|+..+..+|..
T Consensus        74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   47888999999999999999999999852   2         246778888999999999999988864

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.46  E-value=6.2e-05  Score=82.88  Aligned_cols=343  Identities=10%  Similarity=0.071  Sum_probs=198.4

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC------hh
Q 009665           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------SE  148 (529)
Q Consensus        75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~------~~  148 (529)
                      .++..+.+.+..++...+.++..++..+ -+  ..  -.++++.|++.+++++ +..+..++.+|..++...      ++
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d-~p--~~--Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~  162 (960)
T 1wa5_C           89 EIVPLMISLPNNLQVQIGEAISSIADSD-FP--DR--WPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE  162 (960)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHH-ST--TT--CTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhh-Cc--cc--hhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence            4555566566889999999999988643 11  11  1468899999998877 788999999999998722      12


Q ss_pred             hHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CCchh-HHHHHhcCChHHHHHH
Q 009665          149 NTRVV---IDHGAVPIFVR-------LLSSPTD---------DVREQAVWALGNVAG-DSPKC-RDLVLSNGALMPLLAQ  207 (529)
Q Consensus       149 ~~~~~---~~~g~i~~L~~-------lL~~~~~---------~v~~~a~~~L~nl~~-~~~~~-~~~~~~~~~i~~l~~~  207 (529)
                      .+..+   +. ...+.++.       .+..+..         ++...++.+++++.. +.+.. .+.+  ...++.+...
T Consensus       163 ~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~  239 (960)
T 1wa5_C          163 LFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKY  239 (960)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHH
Confidence            22211   11 12333333       2444211         233446666666642 22221 1111  1123334444


Q ss_pred             hccc-----hh---------HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-----cCChHHHHHHHHHHHHh
Q 009665          208 FNEH-----AK---------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----SNDDEVLTDACWALSYL  268 (529)
Q Consensus       208 l~~~-----~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-----~~d~~v~~~a~~~L~~l  268 (529)
                      +...     .+         ..++..++.++..+....+..-......+++.+...+.     ..++.++..++..+..+
T Consensus       240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~  319 (960)
T 1wa5_C          240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV  319 (960)
T ss_dssp             HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred             HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence            4220     11         24667778888877754422222334556666666664     34678899999999888


Q ss_pred             ccCCchh--HH--HHHHhCcH-HHHHHhcC-----------------------CCCcchHHHHHHHHHHhhcCChhhHHH
Q 009665          269 SDGTNDK--IQ--AVIEAGVC-PRLVELLR-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQC  320 (529)
Q Consensus       269 ~~~~~~~--~~--~~~~~~~~-~~L~~lL~-----------------------~~~~~v~~~al~~L~~l~~~~~~~~~~  320 (529)
                      +......  ..  .++. .++ +.++..+.                       +.....+..|..+|..++......   
T Consensus       320 ~~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---  395 (960)
T 1wa5_C          320 TRIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---  395 (960)
T ss_dssp             HTSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---
T ss_pred             hCcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---
Confidence            7543211  00  1111 122 22222221                       112256778888888888754421   


Q ss_pred             HHhcCChHHHHHHhc------cCCchhHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCCHHHHHHHHhcC--
Q 009665          321 IINHQALPCLLDLLT------QNYKKSIKKEACWTISNITAGN--VN----------QIQAIIEAGIIGPLVNLLLNA--  380 (529)
Q Consensus       321 ~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~l~~~~~l~~L~~~l~~~--  380 (529)
                      ++. .+++.+...+.      +. ++..|..|..+++.++.+.  ..          ....++..-++|    .+.++  
T Consensus       396 v~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~  469 (960)
T 1wa5_C          396 VTN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNI  469 (960)
T ss_dssp             HHH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSC
T ss_pred             HHH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCC
Confidence            211 24455555565      44 7789999999999997531  10          122222211333    34555  


Q ss_pred             -ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          381 -EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       381 -~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                       ++.+|..|+|+++.++..-.++...     .+++.++..|.++++.|+..++.+|.+++..
T Consensus       470 ~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          470 PHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             SCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence             8899999999999998865544333     2577888888888899999999999999864

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.46  E-value=3.1e-08  Score=80.85  Aligned_cols=121  Identities=18%  Similarity=0.187  Sum_probs=93.0

Q ss_pred             cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009665          113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (529)
Q Consensus       113 ~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (529)
                      ...++.|+.+|++++ +.+|..|+++|+.+..  +          .++.|+.+|.++++.+|..++++|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            456788999999888 8999999999887653  1          26889999999999999999999999852  1   


Q ss_pred             HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHh
Q 009665          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  268 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l  268 (529)
                            ..++.|+..+ .+.++.++..++|+|..+..          ...++.|..++.++++.|+..++++|..|
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  2478888888 77889999999999998752          35788999999999999999999988653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.44  E-value=1.2e-05  Score=85.96  Aligned_cols=299  Identities=15%  Similarity=0.139  Sum_probs=204.5

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC--CCCchhhh
Q 009665          162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQT  239 (529)
Q Consensus       162 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~  239 (529)
                      +.+.+...+..-+..+...+.++.......+  ....+++..+.+.+....+.   ..|+.++..+|...  ......+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence            4444444222333455666666654221111  11124566777777433344   88999999999665  23344555


Q ss_pred             hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-CcchHHHHHHHHHHhhcCChhhH
Q 009665          240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQT  318 (529)
Q Consensus       240 ~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~  318 (529)
                      -+.+|.++..+.+....|+..|-.++..+...-+...  +  ..++|.|+..|.+. .+..+..|+.+++.++...+.+.
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~  169 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV  169 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence            6788999999988889999998888887775433221  1  35788899988654 68999999999999997666555


Q ss_pred             HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665          319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (529)
Q Consensus       319 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (529)
                      ...+. .++|.+...+.+. .++|++.|..++..+|.  ++.+.      ..++|.|+..+.+++.  ..+++..|+.-+
T Consensus       170 ~~~~~-~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~t  239 (986)
T 2iw3_A          170 ALRMP-ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGATT  239 (986)
T ss_dssp             HHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTCC
T ss_pred             HHhcc-chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcCe
Confidence            44443 6889999999888 99999999999999987  44442      2479999999987742  455666666655


Q ss_pred             cCCC--HHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHH-
Q 009665          397 SGGS--NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-  473 (529)
Q Consensus       397 ~~~~--~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L-  473 (529)
                      ...+  ......     ++|.|.+-|....+.+.+.+.-++.|+++.-+....         ...++-  ..++.++.. 
T Consensus       240 fv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~---------~~~f~~--~l~p~~~~~~  303 (986)
T 2iw3_A          240 FVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV---------IAPFLG--KLLPGLKSNF  303 (986)
T ss_dssp             CCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH---------HHHHHT--TTHHHHHHHT
T ss_pred             eEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH---------Hhhhhh--hhhhHHHHHh
Confidence            4432  222222     477888888889999999999999999987654332         233332  236666664 


Q ss_pred             hcCCCHHHHHHHHHHHHhhCCC
Q 009665          474 QSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       474 ~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      ....+||+++.|.+.++.+...
T Consensus       304 ~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          304 ATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHHh
Confidence            6779999998888888777543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.40  E-value=5.4e-05  Score=83.59  Aligned_cols=395  Identities=11%  Similarity=0.075  Sum_probs=204.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHh-------hcCCCC--hHHHHHHHHHHHHHhcCChhhH---
Q 009665           83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT---  150 (529)
Q Consensus        83 ~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~l-------L~~~~~--~~v~~~a~~~L~~l~~~~~~~~---  150 (529)
                      +++..+..|+.++..+++..........+. .++|.++.+       +...+.  .+.....+.++..++.......   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788899999999987531111111111 233444332       233331  2666777777777764222211   


Q ss_pred             ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------CchhHHHHHh--cCChHHHH
Q 009665          151 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL  205 (529)
Q Consensus       151 ---------~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~---------~~~~~~~~~~--~~~i~~l~  205 (529)
                               ..+  ..+++.++.+...     .++++...+++.+..++..         .+.....+..  ...++.++
T Consensus       335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     111  1345566665533     4778999999998887631         1111111111  12334444


Q ss_pred             HHhccchh--------------HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhcc-----CChHHHHHHHHHHH
Q 009665          206 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS  266 (529)
Q Consensus       206 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-----~d~~v~~~a~~~L~  266 (529)
                      ..+....+              ...++.+..++..++...+   ......+++.+...+.+     .+...++.++.+++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            44421111              1345566667766665433   22333444555555543     56778999999999


Q ss_pred             HhccCCchhHHHHHHhCcHHHHHHhcC-CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHH
Q 009665          267 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  345 (529)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  345 (529)
                      .++..........+. .+++.+..+.. +.++.++..+++++|.++..-..... .+ ..+++.|+..| +   +.++..
T Consensus       490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l-~---~~v~~~  562 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAINLLVRGL-N---SSMSAQ  562 (971)
T ss_dssp             HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHHHHH-H---SSCHHH
T ss_pred             HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHHHHHHHh-C---hHHHHH
Confidence            998765433221111 23332222221 34788999999999998863221111 11 13456666666 2   578999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCC-HHHHHHHHH--cCChHHHHhcc
Q 009665          346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVS--QGCIKPLCDLL  420 (529)
Q Consensus       346 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~--~~~l~~L~~lL  420 (529)
                      |++++.+++..........++ .++..+..++..+  +.+.+..+..+++.++.... .+...++..  ..++..+..++
T Consensus       563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~  641 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC  641 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999755554444443 3777777888874  57889999999999986432 233333322  12233333444


Q ss_pred             CCC--CHHHHH---HHHHHHHHHHHhhhhh-hhcCCCC-ccchHHHHHHhhchHHHHHHHhc--CCCHHHHHHHHHHHHh
Q 009665          421 NCP--DPRIVT---VCLEGLENILKAGEAE-KNMGNTG-GVNLFAQAIDDAEGLEKIENLQS--HDNTEIYEKAVKILET  491 (529)
Q Consensus       421 ~~~--~~~v~~---~~l~aL~~l~~~~~~~-~~~~~~~-~~~~~~~~i~~~g~~~~l~~L~~--~~~~~v~~~a~~il~~  491 (529)
                      +..  +.+...   .++..|..++..-... ....+.. ...++...+.  ..++.+..+..  ..+.++.+.+..++..
T Consensus       642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~e~~~~~~~~  719 (971)
T 2x1g_F          642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPIFKRIAEMWVEEIDVLEAACSAMKH  719 (971)
T ss_dssp             TC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            433  332233   3444444444422110 0000000 0111223332  23555555532  2467899998888887


Q ss_pred             hC
Q 009665          492 YW  493 (529)
Q Consensus       492 ~~  493 (529)
                      ..
T Consensus       720 ~~  721 (971)
T 2x1g_F          720 AI  721 (971)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.38  E-value=2.8e-05  Score=85.83  Aligned_cols=329  Identities=12%  Similarity=0.026  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhc----------------CCCChHHHHHHHHHHHHHhcCCh-h
Q 009665           86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS----------------RDDFPQLQFEAAWALTNIASGTS-E  148 (529)
Q Consensus        86 ~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~----------------~~~~~~v~~~a~~~L~~l~~~~~-~  148 (529)
                      .++..++.++...+... .-+..  ....+++.+.. |.                .++ ++++..|+.++..+....+ .
T Consensus       204 ~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~~  278 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDCH  278 (971)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGGG
T ss_pred             hHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCcccc
Confidence            67778888887766521 01122  33456676666 41                123 7899999999999997422 1


Q ss_pred             hHHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhCCCchhHHHHH---------hc----CChHHHH
Q 009665          149 NTRVVIDHGAVPIFVR-------LLSSPT---DDVREQAVWALGNVAGDSPKCRDLVL---------SN----GALMPLL  205 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~-------lL~~~~---~~v~~~a~~~L~nl~~~~~~~~~~~~---------~~----~~i~~l~  205 (529)
                      .....+. .+++.++.       .+...+   .+.....+..+..++.....   .+.         ..    ..++.++
T Consensus       279 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~ll  354 (971)
T 2x1g_F          279 NYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHST---LLLSGITSADPELSILVHRIVQEIL  354 (971)
T ss_dssp             GCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHH---HHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH---HHHHHhccCcccccHHHHHHHHHHH
Confidence            1111111 12333333       223334   26666667776666532211   111         01    1233344


Q ss_pred             HHhcc----chhHHHHHHHHHHHhhhhcC--------CCCCch----hhhhchHHHHHHhhccCCh--------------
Q 009665          206 AQFNE----HAKLSMLRNATWTLSNFCRG--------KPQPLF----EQTRPALPALERLIHSNDD--------------  255 (529)
Q Consensus       206 ~~l~~----~~~~~~~~~a~~~L~~l~~~--------~~~~~~----~~~~~~l~~L~~ll~~~d~--------------  255 (529)
                      .....    ..+..+...+++.+..++..        ......    .....+++.++..+..++.              
T Consensus       355 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f  434 (971)
T 2x1g_F          355 HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF  434 (971)
T ss_dssp             HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred             HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence            43311    24677888888888877651        111111    2234455555555532211              


Q ss_pred             -HHHHHHHHHHHHhccCCc-hhHHHHHHhCcHHHHHHhcCC-----CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChH
Q 009665          256 -EVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  328 (529)
Q Consensus       256 -~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~  328 (529)
                       ..+..+..++..++.... .....     +++.+...+.+     .++..+..++.+++.++.+......     ..++
T Consensus       435 ~~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~  504 (971)
T 2x1g_F          435 RCYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIP  504 (971)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHH
Confidence             245666666766664433 12121     22233333332     5778899999999999887553322     2233


Q ss_pred             HHHHHh---c--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHH
Q 009665          329 CLLDLL---T--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ  403 (529)
Q Consensus       329 ~L~~lL---~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~  403 (529)
                      .++.++   .  ++ ++.+|..++|+++.++.--......+-  .+++.|+..+.   +.++..|++++.+++.......
T Consensus       505 ~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l  578 (971)
T 2x1g_F          505 RLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQL  578 (971)
T ss_dssp             HHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhc
Confidence            333333   2  33 788999999999998862011111111  25666777772   7899999999999997655444


Q ss_pred             HHHHHHcCChHHHHhccCC--CCHHHHHHHHHHHHHHHHh
Q 009665          404 IKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       404 ~~~l~~~~~l~~L~~lL~~--~~~~v~~~~l~aL~~l~~~  441 (529)
                      ..++  ..++..|..++..  .+.+.+..+.+++..++..
T Consensus       579 ~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          579 KPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            4443  2367777777776  4578888999999999864

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.35  E-value=0.00021  Score=69.39  Aligned_cols=324  Identities=13%  Similarity=0.106  Sum_probs=191.4

Q ss_pred             cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCCh---hhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhhCC
Q 009665          113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS---ENTRVVIDHGAV-PIFVR-LLSSPTDDVREQAVWALGNVAGD  187 (529)
Q Consensus       113 ~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i-~~L~~-lL~~~~~~v~~~a~~~L~nl~~~  187 (529)
                      ...+..++++|.....+++....+..+..+...++   .....+.+..-. ..+.. ++..++.-....+..++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            35677888988866558888888888888888666   444444443322 22333 33434444556666665666533


Q ss_pred             CchhHHHHHhcCChH--HHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh--hhchHHHHHHhhcc-----------
Q 009665          188 SPKCRDLVLSNGALM--PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHS-----------  252 (529)
Q Consensus       188 ~~~~~~~~~~~~~i~--~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~ll~~-----------  252 (529)
                      .+...+.+.  ..+.  .++..|....+......++.+|..|.+.+..+....  ....+|.++.++..           
T Consensus       156 ~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322111110  1122  344455322223335567888888877653332221  12345655543331           


Q ss_pred             ----C--ChHHHHHHHHHHHHhccCCchhHHHHHHhCcH--HHHHHhcCC-CCcchHHHHHHHHHHhhcCCh----hhHH
Q 009665          253 ----N--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVC--PRLVELLRH-PSPSVLIPALRTVGNIVTGDD----MQTQ  319 (529)
Q Consensus       253 ----~--d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~----~~~~  319 (529)
                          +  ..+++..++.++.-++-.+. ....+...++.  +.|+.+++. ..+.+.+-++.++.|+.....    ....
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                1  25578889999988887654 44555555543  566666654 568899999999999998652    1112


Q ss_pred             -HHHhcCChHHHHHHhccCC--chhHHHHHHHHHHHHhc---------------------CCHHHHH-H--------HHH
Q 009665          320 -CIINHQALPCLLDLLTQNY--KKSIKKEACWTISNITA---------------------GNVNQIQ-A--------IIE  366 (529)
Q Consensus       320 -~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~---------------------~~~~~~~-~--------l~~  366 (529)
                       .++..++++ ++..|....  |+++....-.....+..                     =+|-+.. .        +-+
T Consensus       313 ~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence             233334544 555553321  44444332222211111                     0111111 1        111


Q ss_pred             c--CCHHHHHHHHhc----------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHH
Q 009665          367 A--GIIGPLVNLLLN----------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG  434 (529)
Q Consensus       367 ~--~~l~~L~~~l~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~a  434 (529)
                      .  .++..|+++|.+          .|+.+..-||.=|+.++.+. |.....+-+-|+-..++.++.++|++|+..|+.|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a  470 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESIDVLDKTGGKADIMELLNHSDSRVKYEALKA  470 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence            1  247889999973          36778888999999999874 4666666677999999999999999999999999


Q ss_pred             HHHHHHh
Q 009665          435 LENILKA  441 (529)
Q Consensus       435 L~~l~~~  441 (529)
                      +..++..
T Consensus       471 vQklm~~  477 (480)
T 1ho8_A          471 TQAIIGY  477 (480)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988754

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.34  E-value=0.00013  Score=79.86  Aligned_cols=339  Identities=12%  Similarity=0.098  Sum_probs=184.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHH-HhhcCCCChHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009665           82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGT---S--ENTRVVID  155 (529)
Q Consensus        82 s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li-~lL~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~~~~  155 (529)
                      +.++.+...++.++...++   --+...+++.++++.++ .+|.  + ++++..|+.||..+....   +  .....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            4566777788888888875   24566778889999999 8885  3 789999999999998722   2  11111110


Q ss_pred             --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhCC-------CchhHHHHHhcCChHHHHHHhccch
Q 009665          156 --HGAVPIF--------------VRLLSSPTDDVREQAVWALGNVAGD-------SPKCRDLVLSNGALMPLLAQFNEHA  212 (529)
Q Consensus       156 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~~-------~~~~~~~~~~~~~i~~l~~~l~~~~  212 (529)
                        .+.++.+              .......+.+.....+..+..+...       .+..+..+.  .++..++..- ...
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              1111223456666666666555421       111111111  0122333322 334


Q ss_pred             hHHHHHHHHHHHhhhhcCC--CCCchhh----hhchHHHHHHhhccCC--------------------hH-HHH-HHHHH
Q 009665          213 KLSMLRNATWTLSNFCRGK--PQPLFEQ----TRPALPALERLIHSND--------------------DE-VLT-DACWA  264 (529)
Q Consensus       213 ~~~~~~~a~~~L~~l~~~~--~~~~~~~----~~~~l~~L~~ll~~~d--------------------~~-v~~-~a~~~  264 (529)
                      +.++...++..-..++..-  .......    ...+++.++.-+.-++                    ++ ... ..-.+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            6666666665544454321  1111222    2344445554444221                    00 111 01122


Q ss_pred             HHHhccCCc-hhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhcc-----
Q 009665          265 LSYLSDGTN-DKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-----  336 (529)
Q Consensus       265 L~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----  336 (529)
                      |.+++.-.. +...     -+++.+...+.+  .++..+..+++++|.++.+-......-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            333322111 1111     123444444443  578899999999999998765432222222577888888764     


Q ss_pred             CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHH--------
Q 009665          337 NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK--------  405 (529)
Q Consensus       337 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~--------  405 (529)
                      + ...++..++|++|.++.   ..++....     ++..|+..+..+++.++..||+++.+++..+......        
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p  585 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP  585 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence            3 45577789999998876   23443222     4556777777777899999999999999854422210        


Q ss_pred             HHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          406 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       406 ~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      ++  ..++..+...+..-++.-+..+.+++..++...
T Consensus       586 ~~--~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~  620 (1023)
T 4hat_C          586 FI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1023)
T ss_dssp             HH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             hH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence            11  112334444444556666677778888877654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.33  E-value=7e-05  Score=81.99  Aligned_cols=315  Identities=10%  Similarity=0.122  Sum_probs=180.4

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---c-
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS---P-  189 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~---~-  189 (529)
                      +++.+..+|..+.++++...++.++.....-  -....+++.+.++.++ .++.  +++++..|+.+|..+....   + 
T Consensus       195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~  270 (1023)
T 4hat_C          195 IFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN  270 (1023)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence            3444445554444478888899999998872  2245677889999999 8884  6789999999999998622   2 


Q ss_pred             -hhHHHHHh--cCChHHH-----------HHHhc--cchhHHHHHHHHHHHhhhhcCCC-----CCc-hhhhhchHHHHH
Q 009665          190 -KCRDLVLS--NGALMPL-----------LAQFN--EHAKLSMLRNATWTLSNFCRGKP-----QPL-FEQTRPALPALE  247 (529)
Q Consensus       190 -~~~~~~~~--~~~i~~l-----------~~~l~--~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~l~~L~  247 (529)
                       .+.+.+..  .+.+..+           -..+.  ...+.+.....+..+..+.....     .+. ......++..|+
T Consensus       271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll  350 (1023)
T 4hat_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence             12211111  0011111           11111  23356777777777765554321     011 122233344666


Q ss_pred             HhhccCChHHHHHHHHHHHHhccC--C----chhHHHHHHhCcHHHHHHhcCCCC---------cch---------HHHH
Q 009665          248 RLIHSNDDEVLTDACWALSYLSDG--T----NDKIQAVIEAGVCPRLVELLRHPS---------PSV---------LIPA  303 (529)
Q Consensus       248 ~ll~~~d~~v~~~a~~~L~~l~~~--~----~~~~~~~~~~~~~~~L~~lL~~~~---------~~v---------~~~a  303 (529)
                      .+-..+|.++...++.....++..  .    ......+.. .+++.++.-+..+.         ...         ....
T Consensus       351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~  429 (1023)
T 4hat_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1023)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred             HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence            666677888888888877777641  0    111121221 34555555554433         000         0011


Q ss_pred             H----HHHHHhhcCChhhHHHHHhcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHH
Q 009665          304 L----RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLL  377 (529)
Q Consensus       304 l----~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~l~~L~~~l  377 (529)
                      .    .+|..++.-....   ++. -.++.+...+.+ ..++..++.++|+++.++.+.. +....++.. +++.|+.++
T Consensus       430 f~~~Rd~L~~l~~l~~~~---~~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~-vi~~Ll~l~  504 (1023)
T 4hat_C          430 YKSEREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT-VIKDLLDLC  504 (1023)
T ss_dssp             HHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHH---HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH-HHHHHHHhh
Confidence            1    2222222111111   000 123334444443 2379999999999999998633 323333332 788888888


Q ss_pred             hc-----CChhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009665          378 LN-----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  444 (529)
Q Consensus       378 ~~-----~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~  444 (529)
                      ..     ....++..++|+++.++..-  .++..+     .++..|...+..+++.+...|+++|.+|+..+..
T Consensus       505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            64     23456678889999887532  233322     2567788888888899999999999999986543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.29  E-value=1.7e-05  Score=87.33  Aligned_cols=338  Identities=9%  Similarity=0.045  Sum_probs=178.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCC--CChhhHH-hhcCChHH----HHHhhcCC---CChHHHHHHHHHHHHHhcCChhhHH
Q 009665           82 SDDRNIQLDATTQFRKLLSIER--SPPINEV-IQSGVVPR----FIEFLSRD---DFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        82 s~~~~~~~~a~~~l~~lls~~~--~~~~~~~-i~~g~i~~----Li~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      +.+...+..|+.++..++....  ..+.... ....+.+.    ++..|.++   + +-+|..|+|+++.++..-+  ..
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~-p~vr~~a~~~lg~~~~~~~--~~  492 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPH-IILRVDAIKYIYTFRNQLT--KA  492 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSC-HHHHHHHHHHHHHTGGGSC--HH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCC-ceehHHHHHHHHHHHhhCC--HH
Confidence            5667788889999999875321  1011100 00012222    33344555   5 8999999999999987421  11


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chh-HHHHHh--cCChHHHHHHhccc----hhHHHH
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKC-RDLVLS--NGALMPLLAQFNEH----AKLSML  217 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~-~~~~~~--~~~i~~l~~~l~~~----~~~~~~  217 (529)
                      .  -..+++.++..|.+++..|+..|+++|.+++...       +.+ +..+..  ..++..|+.++...    ......
T Consensus       493 ~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~  570 (960)
T 1wa5_C          493 Q--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN  570 (960)
T ss_dssp             H--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred             H--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccccc
Confidence            1  1245788888888888999999999999998631       111 222211  11334444455332    111122


Q ss_pred             HHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc----c-CChHHHHHHHHHHHHhccC-CchhHHHHHHhCcHHHHHHh
Q 009665          218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S-NDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVEL  291 (529)
Q Consensus       218 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----~-~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~l  291 (529)
                      ..+..++..++.........+...+++.|...+.    + .++.....++.+|+.++.. .++... -+...+++.+...
T Consensus       571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~i  649 (960)
T 1wa5_C          571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTV  649 (960)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHH
Confidence            3455555554432222222234455555555543    2 3567777889999988865 323333 3344678888888


Q ss_pred             cCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHH--HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009665          292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL--DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  369 (529)
Q Consensus       292 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~--~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  369 (529)
                      |......+...++.+++.+..........+  ..+++.+.  ..+...   ......+.+|.++....++.+.. ++ .+
T Consensus       650 L~~~~~~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~~l~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~-~~-~~  722 (960)
T 1wa5_C          650 FSEDIQEFIPYVFQIIAFVVEQSATIPESI--KPLAQPLLAPNVWELK---GNIPAVTRLLKSFIKTDSSIFPD-LV-PV  722 (960)
T ss_dssp             HHTTCTTTHHHHHHHHHHHHHHCSSCCTTT--GGGHHHHTSGGGGCCT---TTHHHHHHHHHHHHHHHGGGCSC-SH-HH
T ss_pred             HHhhhHhhHHHHHHHHHHHHHhccCCCHHH--HHHHHHHcCHHHhcCC---CCchhHHHHHHHHHHhChHHHHH-HH-HH
Confidence            877767788888888888775331111000  01233333  333322   13334555555554321110000 00 01


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHH-HHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHH
Q 009665          370 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLE  436 (529)
Q Consensus       370 l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~  436 (529)
                      +..+..++.+...  ...|+++++.++...... ...++-  .+++.++..+... .++++...+..+.
T Consensus       723 l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~--~i~~~l~~~l~~~~~~~~~~~~l~~~~  787 (960)
T 1wa5_C          723 LGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIK--QIAVLLLQRLQNSKTERYVKKLTVFFG  787 (960)
T ss_dssp             HHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHH--HHHHHHHHGGGSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHH--HHHHHHHHHHhhCCcHhHHHHHHHHHH
Confidence            2223333444432  378999999988765555 444442  2566666666654 3455534443333

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.29  E-value=0.00049  Score=76.46  Aligned_cols=356  Identities=10%  Similarity=0.131  Sum_probs=191.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhc---CCCCC--hh-------hHHhh--cCChHHHHHhhcCCCChHHHHHHHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLS---IERSP--PI-------NEVIQ--SGVVPRFIEFLSRDDFPQLQFEAAW  137 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls---~~~~~--~~-------~~~i~--~g~i~~Li~lL~~~~~~~v~~~a~~  137 (529)
                      -++.+++.++ .++..+..++..|..+..   ..+..  ..       ..+..  ..+++.+...+....++.++..++.
T Consensus       139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~  217 (1049)
T 3m1i_C          139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE  217 (1049)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4677887776 455445555555554431   10000  00       11111  1123344445544333789999999


Q ss_pred             HHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC--ch---hHHHHHh--cCChHHHHH---
Q 009665          138 ALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS--PK---CRDLVLS--NGALMPLLA---  206 (529)
Q Consensus       138 ~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~--~~---~~~~~~~--~~~i~~l~~---  206 (529)
                      ++.+...--+  ...+.+...++.++ .++  .+++++..|+.+|..+....  +.   ....+..  .+.+..+..   
T Consensus       218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~  293 (1049)
T 3m1i_C          218 SLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM  293 (1049)
T ss_dssp             HHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence            9988776322  23355667777777 344  37899999999999998542  21   1111111  111111111   


Q ss_pred             --------Hh--ccchhHHHHHHHHHHHhhhhcCC------CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhcc
Q 009665          207 --------QF--NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  270 (529)
Q Consensus       207 --------~l--~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~  270 (529)
                              .+  ..+.+.+.....+..+..+....      +.........+++.++.....++.++...++..+..+++
T Consensus       294 p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~  373 (1049)
T 3m1i_C          294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA  373 (1049)
T ss_dssp             CTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                    01  01224445555555554433210      111123345677788887777888999999888887766


Q ss_pred             ----CC--chhHHHHHHhCcHHHHHHhcCCCCc----------------------chHHHHHHHHHHhhcCChhhHHHHH
Q 009665          271 ----GT--NDKIQAVIEAGVCPRLVELLRHPSP----------------------SVLIPALRTVGNIVTGDDMQTQCII  322 (529)
Q Consensus       271 ----~~--~~~~~~~~~~~~~~~L~~lL~~~~~----------------------~v~~~al~~L~~l~~~~~~~~~~~~  322 (529)
                          ..  ......++. .+++.++..+..++.                      ..+..+..+|..++.-.....-.  
T Consensus       374 ~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~--  450 (1049)
T 3m1i_C          374 DLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE--  450 (1049)
T ss_dssp             HHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred             HHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH--
Confidence                21  112222222 345555555533210                      11223444555554322211111  


Q ss_pred             hcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHHHHHHHHhc-----CChhHHHHHHHHHHHH
Q 009665          323 NHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQI-QAIIEAGIIGPLVNLLLN-----AEFEIKKEAAWAISNA  395 (529)
Q Consensus       323 ~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~l~~L~~~l~~-----~~~~v~~~a~~aL~nl  395 (529)
                        -+.+.+...+.. ..++..+..++|+++.++.+..... ..++. .+++.|..+...     +.+.++..++|+++.+
T Consensus       451 --~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry  527 (1049)
T 3m1i_C          451 --IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQY  527 (1049)
T ss_dssp             --HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence              123444445542 2278889999999999987432221 12111 144455544321     2445565799999987


Q ss_pred             hcCC--CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009665          396 TSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       396 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~  443 (529)
                      +..-  .++...     .+++.|+..+.++++.|+..|+.+|.+++....
T Consensus       528 ~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          528 PRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             HHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            6431  222222     257788888888899999999999999998654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.21  E-value=0.00051  Score=75.76  Aligned_cols=398  Identities=14%  Similarity=0.115  Sum_probs=205.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhh------cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ------SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT  146 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~------~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~  146 (529)
                      ++.+++.+  .++..+..|+.++..+++....+.....+.      .+..+.+...+...+ .+.....+.++..++...
T Consensus       243 l~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~  319 (963)
T 2x19_B          243 IQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENH  319 (963)
T ss_dssp             HHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHh
Confidence            44455555  356788899999999987532111111111      111222222334444 555566666776666421


Q ss_pred             hhhHHHHHh--------CCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chhHHHHHh--cCChHH
Q 009665          147 SENTRVVID--------HGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALMP  203 (529)
Q Consensus       147 ~~~~~~~~~--------~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~~--~~~i~~  203 (529)
                      +   ..+..        ..+++.++.+...     .++.+...++..+..++.+.        +.....+..  ...++.
T Consensus       320 ~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  396 (963)
T 2x19_B          320 S---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV  396 (963)
T ss_dssp             H---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            1   11110        1345556655553     34566777777777665411        111111110  012333


Q ss_pred             HHHHhccchh--------------HHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh----ccCChHHHHHHHHHH
Q 009665          204 LLAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWAL  265 (529)
Q Consensus       204 l~~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll----~~~d~~v~~~a~~~L  265 (529)
                      ++..+....+              .+.+..+..+|..++...+   ......+++.+...+    .+.+...+..+++++
T Consensus       397 ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al  473 (963)
T 2x19_B          397 LLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF  473 (963)
T ss_dssp             HHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            3333321111              0123444555555553221   112233444555555    455778899999999


Q ss_pred             HHhccCCchhHHHHHHhCcHHHHHHhc---CCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhH
Q 009665          266 SYLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI  342 (529)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~~~~L~~lL---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  342 (529)
                      +.++........     ..++.++..+   ..+++.++..++++++.++..-.... ..+ ..+++.++..|.+   +.+
T Consensus       474 ~~i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V  543 (963)
T 2x19_B          474 QSIAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PEL  543 (963)
T ss_dssp             HHHTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGG
T ss_pred             HHHHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chH
Confidence            999976443211     2333344333   33567799999999999986322222 223 3788888888854   689


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhc
Q 009665          343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDL  419 (529)
Q Consensus       343 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~l  419 (529)
                      +..|++++.+++..........+ ..++..+..++..+  +.+.+..+..+++.++...+ .....++.  .+++.+...
T Consensus       544 ~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~--~l~~~l~~~  620 (963)
T 2x19_B          544 SVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH--SLISPYIQQ  620 (963)
T ss_dssp             HHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHH
Confidence            99999999999964332221111 12455556666653  56889999999999987554 33444332  244444443


Q ss_pred             c----CC-CCHHHHH---HHHHHHHHHHHhhhhhhhcC-----------CCCccchHHHHHHhhchHHHHHHHh--cCCC
Q 009665          420 L----NC-PDPRIVT---VCLEGLENILKAGEAEKNMG-----------NTGGVNLFAQAIDDAEGLEKIENLQ--SHDN  478 (529)
Q Consensus       420 L----~~-~~~~v~~---~~l~aL~~l~~~~~~~~~~~-----------~~~~~~~~~~~i~~~g~~~~l~~L~--~~~~  478 (529)
                      +    +. .+++.+.   ..+++|..++..-.......           .+....++...+...  ++.+..+.  ...+
T Consensus       621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~  698 (963)
T 2x19_B          621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQV--FQLIQKVLSKWLND  698 (963)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHH--HHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHH--HHHHHHHHHhccCc
Confidence            3    22 2444444   45556655554422100000           000112334333322  44444442  2356


Q ss_pred             HHHHHHHHHHHHhhCC
Q 009665          479 TEIYEKAVKILETYWV  494 (529)
Q Consensus       479 ~~v~~~a~~il~~~~~  494 (529)
                      .++.+.+..++..+..
T Consensus       699 ~~v~e~~~~~l~~~~~  714 (963)
T 2x19_B          699 AQVVEAVCAIFEKSVK  714 (963)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            7888888888887543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.18  E-value=0.00067  Score=75.42  Aligned_cols=341  Identities=11%  Similarity=0.087  Sum_probs=182.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--hh---hHHHHHh-
Q 009665           82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SE---NTRVVID-  155 (529)
Q Consensus        82 s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~~~~-  155 (529)
                      .++..++..++.++..+++-   .+...+.+..+++.+.+.+.. + ++++..|+.||..+....  +.   ....+.. 
T Consensus       206 ~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          206 GSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            34567888888888887653   223445667788887743322 4 899999999999998742  21   0111110 


Q ss_pred             -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHHHhccchh
Q 009665          156 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK  213 (529)
Q Consensus       156 -~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~~  213 (529)
                       .+++..+.. ++             ...+.+.....+..+..+..       ..+..+..+  ..+++.++... ...+
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence             122222211 11             12234444455555544331       111111211  12344444444 3446


Q ss_pred             HHHHHHHHHHHhhhhc----CCCC--CchhhhhchHHHHHHhhccC-------------------Ch---HHHHHHHHHH
Q 009665          214 LSMLRNATWTLSNFCR----GKPQ--PLFEQTRPALPALERLIHSN-------------------DD---EVLTDACWAL  265 (529)
Q Consensus       214 ~~~~~~a~~~L~~l~~----~~~~--~~~~~~~~~l~~L~~ll~~~-------------------d~---~v~~~a~~~L  265 (529)
                      .++...++..+..++.    ....  ........+++.++..+.-+                   |.   ..+..+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            6777777777767666    3211  11233455566666555321                   00   1233344555


Q ss_pred             HHhccCCchhHHHHHHhCcHHHHHHhcC--CCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhcc-----CC
Q 009665          266 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-----NY  338 (529)
Q Consensus       266 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~  338 (529)
                      ..++......   ++. -+.+.+-..+.  ..++..+..+++++|.++.+.......-+-..+++.+..+...     + 
T Consensus       438 ~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-  512 (1049)
T 3m1i_C          438 VYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-  512 (1049)
T ss_dssp             HHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred             HHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence            5555322211   111 22334444444  3567789999999999986543321111111344455544321     2 


Q ss_pred             chhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHH--------HHH
Q 009665          339 KKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI--------KFL  407 (529)
Q Consensus       339 ~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l  407 (529)
                      .+.++..++|+++.++.-   .++.    +. .+++.++..+.++++.|+..|++++.+++..+.....        .++
T Consensus       513 ~~~v~~~~~~~lgry~~~~~~~~~~----l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~  587 (1049)
T 3m1i_C          513 KAVVASDIMYVVGQYPRFLKAHWNF----LR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI  587 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHH----HH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHH----HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence            455666799999987752   2322    22 2567788888888899999999999999985443221        221


Q ss_pred             HHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          408 VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       408 ~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                        ..++..|..++...+.+-...+.+++..++...
T Consensus       588 --~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          588 --QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             --HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence              123444555555555555666777777776543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.17  E-value=7.4e-05  Score=82.47  Aligned_cols=338  Identities=13%  Similarity=0.111  Sum_probs=189.7

Q ss_pred             cCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009665          124 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL---SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  200 (529)
Q Consensus       124 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~  200 (529)
                      .+.+ ...+..++++++.++.+..+..     ...++.++..+   .++++.++..++|+++.++..-....+.  -..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence            3444 7889999999999998643311     12334444433   3357889999999999997431111111  2357


Q ss_pred             hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccC--ChHHHHHHHHHHHHhccCCc-hhHH
Q 009665          201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ  277 (529)
Q Consensus       201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~L~~l~~~~~-~~~~  277 (529)
                      ++.++..+ .+  +.++..|++++.++|......-......++..+..++...  +...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            77888877 33  7889999999999997643222334566667777777753  57889999999999886543 3333


Q ss_pred             HHHHhCcHHHHHHhc----CCC-CcchHH---HHHHHHHHhhcCCh----------------------hhHHHHHhcCCh
Q 009665          278 AVIEAGVCPRLVELL----RHP-SPSVLI---PALRTVGNIVTGDD----------------------MQTQCIINHQAL  327 (529)
Q Consensus       278 ~~~~~~~~~~L~~lL----~~~-~~~v~~---~al~~L~~l~~~~~----------------------~~~~~~~~~~~l  327 (529)
                      ..++ .+++.+...+    ... ++..+.   ..+.+|+.++..-.                      ..... +-..++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  685 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF  685 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence            3333 3444444433    222 333332   44555555543211                      00111 222456


Q ss_pred             HHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH----Hhc-CChhHHHHHHHHHHHHhc--CC
Q 009665          328 PCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL----LLN-AEFEIKKEAAWAISNATS--GG  399 (529)
Q Consensus       328 ~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~----l~~-~~~~v~~~a~~aL~nl~~--~~  399 (529)
                      +.+..++.. ..+..+.+.++.++..++..-.+...     .++|.++..    +.. +.+    ..++.++.++.  +.
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~  756 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH  756 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence            666666643 12567889999999887642111111     123333333    332 122    34444555443  22


Q ss_pred             CH---HHHHHHHHcCChHHHHhccC---CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccch-HHHHHHhhchHHHHHH
Q 009665          400 SN---EQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL-FAQAIDDAEGLEKIEN  472 (529)
Q Consensus       400 ~~---~~~~~l~~~~~l~~L~~lL~---~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~-~~~~i~~~g~~~~l~~  472 (529)
                      ++   .....+.+ .++..+..++.   ..+++++......+..++......--.     ... +..+      ++.+..
T Consensus       757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~i------~~~~~~  824 (963)
T 2x19_B          757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKAV------FQCAVL  824 (963)
T ss_dssp             CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHHH------HHHHHH
T ss_pred             CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHHH------HHHHHH
Confidence            21   12221111 12333333332   246999999999999999776532110     011 2222      333344


Q ss_pred             HhcCCCHHHHHHHHHHHHhhCCC
Q 009665          473 LQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       473 L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      ...+.+.++...+.+.+..++..
T Consensus       825 ~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          825 ALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhc
Confidence            45688999999999999988764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.17  E-value=5e-05  Score=70.02  Aligned_cols=186  Identities=15%  Similarity=0.099  Sum_probs=137.0

Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh
Q 009665          244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  323 (529)
Q Consensus       244 ~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  323 (529)
                      ..++.-|.+.+...+..++..|..+...+......++..+++..|+......+..++..++++++++....+..-..+-+
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            34556666778888999999999865566678889999999999999999999999999999999999864433333335


Q ss_pred             cCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CCHHHHHHHHh---cCChhHHHHHHH
Q 009665          324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------A--GIIGPLVNLLL---NAEFEIKKEAAW  390 (529)
Q Consensus       324 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~l~~L~~~l~---~~~~~v~~~a~~  390 (529)
                      ...+..+..++.+. ...|.+.|...|-.++..++.....+.+        .  ..+..|+.+|.   ..|.+++..|..
T Consensus       201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            67888999999876 8999999999999988754433322222        1  24889999997   668999999888


Q ss_pred             HHHHHhcCCC-HH----HHHHHHHcCChHHHHhccCCC--CHHHHHH
Q 009665          391 AISNATSGGS-NE----QIKFLVSQGCIKPLCDLLNCP--DPRIVTV  430 (529)
Q Consensus       391 aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~lL~~~--~~~v~~~  430 (529)
                      .|-.+..+.+ .+    ....|-+.|+-..+...++..  +++++..
T Consensus       280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            8877776644 22    334444556556666666654  5565544

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.01  E-value=0.00015  Score=66.85  Aligned_cols=189  Identities=12%  Similarity=0.135  Sum_probs=142.5

Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009665          287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  366 (529)
Q Consensus       287 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  366 (529)
                      .+++-|.+.+......++.-|..+...+......++..+++..|+.+.... +...+..+..++.++... ......++.
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs  199 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence            344555566777889999999997766778888999999999999999988 999999999999999986 555556663


Q ss_pred             -cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHH--------c--CChHHHHhccC---CCCHHHHHHHH
Q 009665          367 -AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS--------Q--GCIKPLCDLLN---CPDPRIVTVCL  432 (529)
Q Consensus       367 -~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~--------~--~~l~~L~~lL~---~~~~~v~~~~l  432 (529)
                       ..++..+..++.+.+..|.+.|+..|..++...+ .....+.+        .  ..+..|+.+|+   ..|.+++..+.
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence             4578889999998888999999999999987642 11111111        1  23778889997   78899999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCC--CHHHHHH
Q 009665          433 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEK  484 (529)
Q Consensus       433 ~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~--~~~v~~~  484 (529)
                      ..|..++...+....      ...+...+++.|.-..+..++...  ++++.+.
T Consensus       279 tLIN~lL~~apd~d~------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDS------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHH------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhH------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            999988877543221      234677788888777888866554  6665443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.97  E-value=0.0018  Score=70.78  Aligned_cols=357  Identities=13%  Similarity=0.123  Sum_probs=187.5

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHH
Q 009665          119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVL  196 (529)
Q Consensus       119 Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~  196 (529)
                      +...|....++++...++.+|..+.+=-  ....+++.+.++.| ..+|  .+++++..|+.+|..+.... +.+.+.+.
T Consensus       211 l~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~  286 (1073)
T 3gjx_A          211 CQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE  286 (1073)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence            3334444444788888999999988722  34567788888988 4776  46789999999999988532 22222221


Q ss_pred             h--cCChHHHHHHh------------ccchhHHHHHHHHHHHhhhhcCC------CCCchhhhhchHHHHHHhhccCChH
Q 009665          197 S--NGALMPLLAQF------------NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALERLIHSNDDE  256 (529)
Q Consensus       197 ~--~~~i~~l~~~l------------~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~L~~ll~~~d~~  256 (529)
                      .  ..++..+-.++            ....+.+.....+.++..+....      .+........++..++.+-..+|.+
T Consensus       287 ~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~e  366 (1073)
T 3gjx_A          287 TLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETE  366 (1073)
T ss_dssp             HHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHH
Confidence            1  01111111111            12234566666777776655432      0011222334455566666788999


Q ss_pred             HHHHHHHHHHHhccC----C-----ch------------hHHHHHH---hCcHHHHHHhcCCCCc----------chHH-
Q 009665          257 VLTDACWALSYLSDG----T-----ND------------KIQAVIE---AGVCPRLVELLRHPSP----------SVLI-  301 (529)
Q Consensus       257 v~~~a~~~L~~l~~~----~-----~~------------~~~~~~~---~~~~~~L~~lL~~~~~----------~v~~-  301 (529)
                      +...++.....++..    .     ..            ....+..   ..+...++.-+..+.+          .++. 
T Consensus       367 i~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~  446 (1073)
T 3gjx_A          367 IFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREF  446 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHH
Confidence            988888877666431    0     00            0111111   1223333344433221          0110 


Q ss_pred             -----------HHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC-CchhHHHHHHHHHHHHhcC-CHHHHHHHHHcC
Q 009665          302 -----------PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAG-NVNQIQAIIEAG  368 (529)
Q Consensus       302 -----------~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~  368 (529)
                                 ..-.+|..++.-....+..    -.++.+...+..+ .++.....+||+++.++.. .++.-..++. .
T Consensus       447 ~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~  521 (1073)
T 3gjx_A          447 MKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-T  521 (1073)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-H
T ss_pred             HhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-H
Confidence                       0111222222111111111    1233344334332 2688999999999999864 3322222222 2


Q ss_pred             CHHHHHHHHhcC---C--hhHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          369 IIGPLVNLLLNA---E--FEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       369 ~l~~L~~~l~~~---~--~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      +++.|+.+....   +  ..++...+|+++.....-  .++..+.     ++..|++.+...++.|+..++.++..++..
T Consensus       522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~~  596 (1073)
T 3gjx_A          522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQK  596 (1073)
T ss_dssp             HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            677787777654   2  235566678888876531  2333332     577888888889999999999999999887


Q ss_pred             hhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 009665          442 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  490 (529)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~  490 (529)
                      +...-...+++...+|...+-+. .......|....-..+|+....++.
T Consensus       597 C~~~lv~~~~~e~~p~i~~il~~-~~~~~~~l~~~~~~~lyeav~~vi~  644 (1073)
T 3gjx_A          597 CRRHFVQVQVGEVMPFIDEILNN-INTIICDLQPQQVHTFYEAVGYMIG  644 (1073)
T ss_dssp             TGGGGTSCCTTCSSCHHHHHHTS-HHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhccccccchHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            75432111222234565544321 1222223333333444544444443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.87  E-value=6.9e-05  Score=81.90  Aligned_cols=345  Identities=12%  Similarity=0.054  Sum_probs=183.5

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCC--hhhHHHHHhCCC
Q 009665           81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENTRVVIDHGA  158 (529)
Q Consensus        81 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~  158 (529)
                      .+.++.+...++.++...++   -.+...++..++++.+..+|..   ++++..|+.||..+....  ++....++..=.
T Consensus       203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~  276 (980)
T 3ibv_A          203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN  276 (980)
T ss_dssp             HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence            34778888999999999985   2446677778899999999874   789999999999998744  333333332200


Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCc-----hhHHH--HHhcCChHHHHHHhccchhHHHHHHHHHH
Q 009665          159 VPIFVRLLS--SPTDDVREQAVWALGNVAG------DSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWT  223 (529)
Q Consensus       159 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~------~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  223 (529)
                      +...+..+.  ..+.++.+..+..+..++.      ..+     +.+..  -.-.+.++.++.++ .+.+.++...++..
T Consensus       277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~F  355 (980)
T 3ibv_A          277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPF  355 (980)
T ss_dssp             HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence            111111122  3566766555544443321      111     10000  01124677777777 44455666666655


Q ss_pred             HhhhhcCC---CC----C--chhhhhchHHHHHHhhccC-----Ch-----------HHHHHHHHHHHHhc-cCCchhHH
Q 009665          224 LSNFCRGK---PQ----P--LFEQTRPALPALERLIHSN-----DD-----------EVLTDACWALSYLS-DGTNDKIQ  277 (529)
Q Consensus       224 L~~l~~~~---~~----~--~~~~~~~~l~~L~~ll~~~-----d~-----------~v~~~a~~~L~~l~-~~~~~~~~  277 (529)
                      +..+....   +.    .  .......+++.++.-+.-+     +.           +.|.... .+...+ .-.++..-
T Consensus       356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l  434 (980)
T 3ibv_A          356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFS  434 (980)
T ss_dssp             HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHH
Confidence            55444220   11    1  1123344555555444421     11           2344444 222222 11111111


Q ss_pred             HHHHhCcHHHHHHhcC---CCCcchHHHHHHHHHHhhcCChhhHHHH-Hhc----CChHHHHHHhc-----cCCchhHHH
Q 009665          278 AVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCI-INH----QALPCLLDLLT-----QNYKKSIKK  344 (529)
Q Consensus       278 ~~~~~~~~~~L~~lL~---~~~~~v~~~al~~L~~l~~~~~~~~~~~-~~~----~~l~~L~~lL~-----~~~~~~v~~  344 (529)
                      ...-.-+.+.+...+.   +.++..++.++.+|+.++.+.......+ -..    .+++.+..++.     .+ .+.|+.
T Consensus       435 ~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~  513 (980)
T 3ibv_A          435 SYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL  513 (980)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence            1000011122223332   2457889999999999988654321111 001    23445555544     44 789999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHh
Q 009665          345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  418 (529)
Q Consensus       345 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  418 (529)
                      .++|+++..+.--..      ....++.++..+-+      ++..|+..|++++.+++..+.+....++-  .++..+..
T Consensus       514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~--~il~~l~~  585 (980)
T 3ibv_A          514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE--SSLAMLGD  585 (980)
T ss_dssp             HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH--HHHHHTTG
T ss_pred             HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH--HHHHHHHH
Confidence            999999998872111      11355555555544      46789999999999998765432212211  13444444


Q ss_pred             ccCC-----CC----------------HHHHHHHHHHHHHHHHhh
Q 009665          419 LLNC-----PD----------------PRIVTVCLEGLENILKAG  442 (529)
Q Consensus       419 lL~~-----~~----------------~~v~~~~l~aL~~l~~~~  442 (529)
                      +|..     .+                .+-+....++++.++...
T Consensus       586 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~  630 (980)
T 3ibv_A          586 LLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSG  630 (980)
T ss_dssp             GGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHS
T ss_pred             hhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCC
Confidence            4442     11                123556788888888654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.72  E-value=0.00061  Score=74.49  Aligned_cols=307  Identities=10%  Similarity=0.005  Sum_probs=168.7

Q ss_pred             CCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHH
Q 009665          126 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP--KCRDLVLSNGALMP  203 (529)
Q Consensus       126 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~--~~~~~~~~~~~i~~  203 (529)
                      .+ +.++..++.||.....-  -....+++.+.++.+..+|..  ++++..|+.+|..+.....  ..+..++..=.+..
T Consensus       205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            55 88999999999999872  223456667888999988864  8999999999999984432  22222222101112


Q ss_pred             HHHHhcc-chhHHHHHHHHHHHhhhh------cCCCC--------CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHh
Q 009665          204 LLAQFNE-HAKLSMLRNATWTLSNFC------RGKPQ--------PLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  268 (529)
Q Consensus       204 l~~~l~~-~~~~~~~~~a~~~L~~l~------~~~~~--------~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l  268 (529)
                      .+..+.. ..|.+..+..+..+..++      ...+.        .......++++.++.++.+++.++...++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            2222211 345555544444332221      22221        11134568899999999999989888777777655


Q ss_pred             ccC----C-----chhHHHHHHhCcHHHHHHhcCCCCc----------------chHHHHHHHHHHhhcCChhhHHHHHh
Q 009665          269 SDG----T-----NDKIQAVIEAGVCPRLVELLRHPSP----------------SVLIPALRTVGNIVTGDDMQTQCIIN  323 (529)
Q Consensus       269 ~~~----~-----~~~~~~~~~~~~~~~L~~lL~~~~~----------------~v~~~al~~L~~l~~~~~~~~~~~~~  323 (529)
                      ...    .     ......++. .+++.++.-+..+..                ..|....-.+..++.-.+...-..+-
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            421    0     111111211 344444444543211                12222221111221111111111000


Q ss_pred             cCChHHHHHHhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcC----CHHHHHHHHh-----cCChhHHHHHHH
Q 009665          324 HQALPCLLDLLT---QNYKKSIKKEACWTISNITAGNVNQIQAII-EAG----IIGPLVNLLL-----NAEFEIKKEAAW  390 (529)
Q Consensus       324 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~----~l~~L~~~l~-----~~~~~v~~~a~~  390 (529)
                      .-+.+.+...+.   +. ++..++.++.+++.++.+......... ...    +++.+..++.     ..++.|+..+++
T Consensus       439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME  517 (980)
T ss_dssp             HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            011222333332   33 688899999999999886332111000 001    3455555555     568899999999


Q ss_pred             HHHHHhcCC--CHHHHHHHHHcCChHHHHh--ccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009665          391 AISNATSGG--SNEQIKFLVSQGCIKPLCD--LLNCPDPRIVTVCLEGLENILKAGEA  444 (529)
Q Consensus       391 aL~nl~~~~--~~~~~~~l~~~~~l~~L~~--lL~~~~~~v~~~~l~aL~~l~~~~~~  444 (529)
                      +++..+..-  .++...     .+++.+++  .+.++++.|+..+..++.++++....
T Consensus       518 ~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          518 ILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            999987642  122222     24555666  66677889999999999999987653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.0012  Score=61.05  Aligned_cols=195  Identities=13%  Similarity=0.117  Sum_probs=125.9

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChh-hHHh--hcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcC
Q 009665           69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG  145 (529)
Q Consensus        69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~-~~~i--~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~  145 (529)
                      ++..+| +-+.|.|.+...|..|+..+.+++........ ....  -....+.+...+.+.+ ..++..++.++..++..
T Consensus         8 d~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~   85 (278)
T 4ffb_C            8 DYTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDA   85 (278)
T ss_dssp             ---CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTT
T ss_pred             hhhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHH
Confidence            344566 66889999999999999999998865321111 1111  1235566777888777 89999999999988753


Q ss_pred             Chh-----hHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHH
Q 009665          146 TSE-----NTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN  219 (529)
Q Consensus       146 ~~~-----~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~  219 (529)
                      ...     ......-..++|.|+. .+.+....++..+..++..++...... ..     +++.++..+ .+.++.++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~  158 (278)
T 4ffb_C           86 FASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAA  158 (278)
T ss_dssp             CC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHH
T ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHH
Confidence            211     1111112345677775 577788899999988887776322111 11     134444555 6667888888


Q ss_pred             HHHHHhhhhcCC---CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665          220 ATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (529)
Q Consensus       220 a~~~L~~l~~~~---~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~  272 (529)
                      ++..|..+....   ..........+++.+..++.+.|+.||..+..++..+-..-
T Consensus       159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            887777765542   11222334567778888999999999999999998876543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.57  E-value=0.021  Score=62.54  Aligned_cols=296  Identities=13%  Similarity=0.127  Sum_probs=156.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHH-HHhhcCCCChHHHHHHHHHHHHHhcCC-hhhHHHHHh--CC
Q 009665           82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVID--HG  157 (529)
Q Consensus        82 s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~L-i~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~--~g  157 (529)
                      +.++.+...++.+++.+++=   -+...+++.++++.| ..+|.  + +.++..|+.||..+.... ++....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            56777888888999988753   346677888999988 46664  4 789999999999998743 222222211  11


Q ss_pred             ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-C-------ChHHHHHHhccchhHHH
Q 009665          158 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-G-------ALMPLLAQFNEHAKLSM  216 (529)
Q Consensus       158 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-~-------~i~~l~~~l~~~~~~~~  216 (529)
                      ++..+..++             ...+.+.....+.++..+...   ....+... +       ++..++.+- ...+.++
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei  367 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI  367 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence            222222222             112334444455555554321   12222221 1       122233332 3456777


Q ss_pred             HHHHHHHHhhhhc----CCC-----C------------CchhhhhchHH----HHHHhhccCC-----------------
Q 009665          217 LRNATWTLSNFCR----GKP-----Q------------PLFEQTRPALP----ALERLIHSND-----------------  254 (529)
Q Consensus       217 ~~~a~~~L~~l~~----~~~-----~------------~~~~~~~~~l~----~L~~ll~~~d-----------------  254 (529)
                      .+.++..-..|..    ..+     .            .......+++.    .++.-+..++                 
T Consensus       368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            6665544333322    111     0            01111233333    3333333221                 


Q ss_pred             ---h-----HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC--CCcchHHHHHHHHHHhhcCChhh-HHHHHh
Q 009665          255 ---D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQ-TQCIIN  323 (529)
Q Consensus       255 ---~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~-~~~~~~  323 (529)
                         .     .+..+++..+.++..  .+...     -+++.+...+..  .++.....+++++|.++..-... -..++-
T Consensus       448 ~d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETLVYLTHLDY--VDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHhcCCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence               0     122233333332221  11111     133444444443  35778899999999997543322 212222


Q ss_pred             cCChHHHHHHhccCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 009665          324 HQALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  396 (529)
Q Consensus       324 ~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~  396 (529)
                       .+++.|+.+..++.    ...++...+|++|..+.   ..++....     ++..|++.+.+.++.|+..|+.++..++
T Consensus       521 -~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~  594 (1073)
T 3gjx_A          521 -TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA  594 (1073)
T ss_dssp             -HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence             46667777665442    23456667799998765   22333222     5667888888889999999999999998


Q ss_pred             cCCC
Q 009665          397 SGGS  400 (529)
Q Consensus       397 ~~~~  400 (529)
                      ..+.
T Consensus       595 ~~C~  598 (1073)
T 3gjx_A          595 QKCR  598 (1073)
T ss_dssp             HHTG
T ss_pred             HHHH
Confidence            7654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.37  E-value=0.00052  Score=67.08  Aligned_cols=245  Identities=16%  Similarity=0.135  Sum_probs=153.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh-hhHHhhcCChHHHHHhhc---------CCCChHHHHHHHHHHH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP-INEVIQSGVVPRFIEFLS---------RDDFPQLQFEAAWALT  140 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~~i~~g~i~~Li~lL~---------~~~~~~v~~~a~~~L~  140 (529)
                      +-...|+..|-++..++|+-|+.+||.++....... ...-.+..+.-.|+-.|.         +..-..||+.|+.+|+
T Consensus       174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            356788888999999999999999999986532100 000011122333333331         2222468999999999


Q ss_pred             HHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHH
Q 009665          141 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA  220 (529)
Q Consensus       141 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  220 (529)
                      .+ ..-++.      ..++..++..+..+..+++..++-.|..+.   + .-..  -.++++.++..| .+.+.+++..|
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---D-LL~~--Ld~Vv~aVL~GL-~D~DDDVRAVA  319 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---E-FVED--KDGLCRKLVSLL-SSPDEDIKLLS  319 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---G-GCCC--HHHHHHHHHHHT-TCSSHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---H-HHHH--HHHHHHHHHhhc-CCcccHHHHHH
Confidence            99 544433      344555555567788999999999999881   1 1111  123566677777 66788999999


Q ss_pred             HHHHhhhhcCCCCCchhhhhchHHHHHHhhccCC--hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcc
Q 009665          221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS  298 (529)
Q Consensus       221 ~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~  298 (529)
                      +.+|.-++  .+    .....++..+...|.+-|  .......+..|+.|+..+...   ..+...+|+|..+++|.-..
T Consensus       320 AetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITS  390 (800)
T 3oc3_A          320 AELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPE  390 (800)
T ss_dssp             HHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHH
T ss_pred             HHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHH
Confidence            99999888  11    234556666666666432  122333444555555433211   11237899999999999999


Q ss_pred             hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-HhccCCchhHHHHHHHHH
Q 009665          299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTI  350 (529)
Q Consensus       299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~v~~~a~~~L  350 (529)
                      ||..+++++..+..  .         .++..+.+ +|-.+ +.+++..+..+.
T Consensus       391 VR~AVL~TL~tfL~--~---------~~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          391 VRTSILNMVKNLSE--E---------SIDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             HHHHHHHHTTTCCC--H---------HHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--h---------hHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            99999999988871  1         22333333 33334 677777665554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.35  E-value=0.0015  Score=58.95  Aligned_cols=181  Identities=14%  Similarity=0.066  Sum_probs=117.2

Q ss_pred             HHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh----hhHHH
Q 009665          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD----MQTQC  320 (529)
Q Consensus       245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~----~~~~~  320 (529)
                      .+...+.+.|..-+..++..|........+.....++ .+++-+.-.+.+.+..+...++.+|..+...-.    .....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            3445555667666666666666654332221111111 122222223346788888888888877753110    00110


Q ss_pred             HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 009665          321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  399 (529)
Q Consensus       321 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  399 (529)
                       ...-++|.|+.-+.++ ...+|..+-.++..++.- ++.        .+++.+++-+.+.+..+|.+++..+..+....
T Consensus       129 -ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          129 -EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             -HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence             0123678889888888 788998888777666542 222        26677888888899999999999999997532


Q ss_pred             CHHHHHHHHHcCCh---HHHHhccCCCCHHHHHHHHHHHHHHHHhh
Q 009665          400 SNEQIKFLVSQGCI---KPLCDLLNCPDPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       400 ~~~~~~~l~~~~~l---~~L~~lL~~~~~~v~~~~l~aL~~l~~~~  442 (529)
                      +..      ....+   +.+..++.+.|..|+..|+.++..++...
T Consensus       199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            212      23468   99999999999999999999999887543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.34  E-value=0.0029  Score=57.03  Aligned_cols=177  Identities=15%  Similarity=0.076  Sum_probs=115.6

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhh----cCCCC
Q 009665          161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGKPQ  233 (529)
Q Consensus       161 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~----~~~~~  233 (529)
                      .+...|-+.+..-+..++..|.......+   +.+..  .++.++..+.   .+++..+...++.+|..+.    ...+.
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34444555566666666666655543322   11111  2222333221   3456667777776666553    32223


Q ss_pred             CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 009665          234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       234 ~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~  313 (529)
                      ........++|.|+.-+.+..+.++..+-.++..++...+       -..+++.++..+.+.++..+..++..++.+...
T Consensus       125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            3333346788999999998889999888888776653211       114667788889999999999999999999764


Q ss_pred             ChhhHHHHHhcCCh---HHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          314 DDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       314 ~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      ....     ....+   +.+..++.++ +..||..|..++..+-.
T Consensus       198 ~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          198 AGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             cCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            3222     23568   9999999998 99999999999987655

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.33  E-value=0.038  Score=50.95  Aligned_cols=205  Identities=15%  Similarity=0.108  Sum_probs=150.7

Q ss_pred             HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665          277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (529)
Q Consensus       277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  352 (529)
                      +.+...+++..|+..|..-+.+.+..+..+++++......    ....+..  -.+.+..++....++++--.+...|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            4466679999999999888888999999999999875432    3333332  233333333333245666666666777


Q ss_pred             HhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc--CChHHHHhccCCCCHHHHHH
Q 009665          353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--GCIKPLCDLLNCPDPRIVTV  430 (529)
Q Consensus       353 l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~lL~~~~~~v~~~  430 (529)
                      ++.. ......++..+.+..+.+.+..++.++...|...+..+......-...+|..+  .+...+..||.+++.-++..
T Consensus       150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ  228 (341)
T 1upk_A          150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  228 (341)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence            7666 66677788888899999999999999999999999999876443444444332  34677888999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665          431 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  493 (529)
Q Consensus       431 ~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  493 (529)
                      ++..|+.++..-...         +.+...+.+..-+..+-.|..+++..|+-.|.++..-|.
T Consensus       229 SlKLLgelLldr~N~---------~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV  282 (341)
T 1upk_A          229 SLKLLGELLLDRHNF---------TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV  282 (341)
T ss_dssp             HHHHHHHHHHSGGGH---------HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHH---------HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence            999999998765432         234666666667888888899999999988888765443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.27  E-value=0.011  Score=54.39  Aligned_cols=189  Identities=11%  Similarity=0.117  Sum_probs=125.7

Q ss_pred             HHHhcCCCCcchHHHHHHHHHHhhcCChhhHH--HHH--hcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCC------
Q 009665          288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ--CII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------  357 (529)
Q Consensus       288 L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~--~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------  357 (529)
                      +-+-|.+.++..|..|+..|..+.........  ..+  -....+.+...+.+. +..+...++.++..++...      
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            55778999999999999999888765432211  111  123456677788887 8999999999999887621      


Q ss_pred             HHHHHHHHHcCCHHHHHHH-HhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHH
Q 009665          358 VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  436 (529)
Q Consensus       358 ~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~  436 (529)
                      .......+ ..++|.|+.- +.+....++..|..++..++....+..       .+++.+...+++.+|.++..++..|.
T Consensus        93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            11111222 2367777764 667778899999988888775432111       13566778889999999999999999


Q ss_pred             HHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          437 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       437 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      .++......       ..+ ....+.  ..++.+..+.+|.+++|+..|..++-.+|-.
T Consensus       165 ~~l~~fg~~-------~~~-~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          165 ELMAAFGLT-------NVN-VQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHTTT-------TCC-HHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCC-------cCC-chhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            988642211       011 111121  1244577788999999999999988776653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.25  E-value=0.004  Score=61.05  Aligned_cols=244  Identities=12%  Similarity=0.084  Sum_probs=156.7

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLL--SS--------PTDDVREQAVWALG  182 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL--~~--------~~~~v~~~a~~~L~  182 (529)
                      +...|+.-|-++. .++|.-|+-+|..+.............  ..+.-.|+.++  ..        --..||+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            5566777777777 899999999999987632211000011  11222222222  11        23679999999999


Q ss_pred             HhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHH
Q 009665          183 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC  262 (529)
Q Consensus       183 nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~  262 (529)
                      .+ ..-+.-      ..++..++..+ .....+++..++-.|.++ ..--.    ...++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL~----~Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFVE----DKDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGCC----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHHH----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence            99 554431      23444444444 555788888888888888 11111    1578899999999999999999999


Q ss_pred             HHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCC--cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCch
Q 009665          263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK  340 (529)
Q Consensus       263 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  340 (529)
                      .+|..++  ..+...     .++..+...|.+.+  ..-....+..|+.++......   ..+...+|.|..++.|+ -.
T Consensus       321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999998  223333     34555666665432  223444566777777654311   12347899999999999 99


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 009665          341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  393 (529)
Q Consensus       341 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~  393 (529)
                      .||..+..++..+.  .......        ...++|-..+.+++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999998887  2232221        2233455667788887777664

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.18  E-value=0.025  Score=52.14  Aligned_cols=202  Identities=13%  Similarity=0.122  Sum_probs=139.6

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK----CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  227 (529)
                      .+...+.+..|+..|..-+.+.|..+..++.++......    ..+.+..  -...+..++..-.++++.-.+-..|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            455668889999999888899999999999999865532    2233332  2333333333333455555555555555


Q ss_pred             hcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh---CcHHHHHHhcCCCCcchHHHHH
Q 009665          228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPAL  304 (529)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~al  304 (529)
                      ++...-.......+.+-.+...+..++=+|..+|..++..+..........++..   .++...-.+|.+++.-++..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            5543222333334555667778888888999999999998776554444444443   4577778899999999999999


Q ss_pred             HHHHHhhcCCh--hh-HHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009665          305 RTVGNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (529)
Q Consensus       305 ~~L~~l~~~~~--~~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  356 (529)
                      ..||.+.....  .. ...+-+..-+..++.+|++. +..++-+|..++--+.+.
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeC
Confidence            99999987532  22 22223556688999999999 999999999999888773

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.07  E-value=0.00018  Score=64.46  Aligned_cols=185  Identities=17%  Similarity=0.158  Sum_probs=127.4

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009665          121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  200 (529)
Q Consensus       121 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~  200 (529)
                      .++.+++ +.++..++..+                  ....|..++.++++.||..++..+.                  
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------   99 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------   99 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence            4556777 89998888742                  1344677888899999998886421                  


Q ss_pred             hHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHH
Q 009665          201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  280 (529)
Q Consensus       201 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  280 (529)
                      .+.+..++ .+.+..++..++..+       +.          +.+..++.++++.|+..+...   +.           
T Consensus       100 ~~~L~~ll-~D~d~~VR~~aA~~l-------~~----------~~L~~L~~D~d~~VR~~aA~~---l~-----------  147 (244)
T 1lrv_A          100 REQLSALM-FDEDREVRITVADRL-------PL----------EQLEQMAADRDYLVRAYVVQR---IP-----------  147 (244)
T ss_dssp             SGGGGGTT-TCSCHHHHHHHHHHS-------CT----------GGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHhC-------CH----------HHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence            12344455 777888888877743       10          134566778899999988763   11           


Q ss_pred             HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Q 009665          281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  360 (529)
Q Consensus       281 ~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  360 (529)
                          .+.+..++.++++.|+..++..++                  .+.+..++.++ ++.||..++..+          
T Consensus       148 ----~~~l~~l~~D~d~~VR~~aa~~l~------------------~~ll~~ll~D~-d~~VR~aaa~~l----------  194 (244)
T 1lrv_A          148 ----PGRLFRFMRDEDRQVRKLVAKRLP------------------EESLGLMTQDP-EPEVRRIVASRL----------  194 (244)
T ss_dssp             ----GGGGGGTTTCSCHHHHHHHHHHSC------------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence                123446678888999988877511                  13455677787 999999988652          


Q ss_pred             HHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHH
Q 009665          361 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL  435 (529)
Q Consensus       361 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL  435 (529)
                              ..+.|..++.++++.||..++..+.                   .+.|..| +++++.|+..+...|
T Consensus       195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                    1245777788899999999998753                   2455556 889999998876554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.07  E-value=0.034  Score=50.97  Aligned_cols=292  Identities=15%  Similarity=0.146  Sum_probs=171.2

Q ss_pred             HHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc-cCChHHHHH
Q 009665          182 GNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTD  260 (529)
Q Consensus       182 ~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~  260 (529)
                      .++.-+.+..-+-+...+++..+...+ +-.+.++.+..+..|...+..+ .....-....+|.++..+. +++++|...
T Consensus       267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence            344444445567777888888888888 6678888999999888777653 2222234678898888887 778999999


Q ss_pred             HHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-------Ccc-------hHHHHHHHHHHhhcC-------------
Q 009665          261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-------SPS-------VLIPALRTVGNIVTG-------------  313 (529)
Q Consensus       261 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-------~~~-------v~~~al~~L~~l~~~-------------  313 (529)
                      .-..|+|...+.....+..+..|.+..|...+...       +..       +...+++++.|+...             
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G  424 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG  424 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence            99999999998877777778889999988876321       112       334455555555421             


Q ss_pred             C--hhhHHHHHhcCChHHHHHHhccCC-----chhHHHHHHHHHHHHhcCC---HHHH----HHHHHcCCHHHHHHHHh-
Q 009665          314 D--DMQTQCIINHQALPCLLDLLTQNY-----KKSIKKEACWTISNITAGN---VNQI----QAIIEAGIIGPLVNLLL-  378 (529)
Q Consensus       314 ~--~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~l~~L~~~l~-  378 (529)
                      .  ..+...+++..++..|+..|+-+.     --++|......+--+.+..   .+..    ......+++..++-.+. 
T Consensus       425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~sW  504 (619)
T 3c2g_A          425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYSW  504 (619)
T ss_dssp             HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHHH
Confidence            1  123334556678888888886541     1245555555444444320   0100    01111223333333222 


Q ss_pred             ---cC-Ch---h----HHHHHHHHHHHHhcCC-CHHH-HHHHHHcCChHHHHhccCCC--CHHHHHHHHHHHHHHHHhhh
Q 009665          379 ---NA-EF---E----IKKEAAWAISNATSGG-SNEQ-IKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       379 ---~~-~~---~----v~~~a~~aL~nl~~~~-~~~~-~~~l~~~~~l~~L~~lL~~~--~~~v~~~~l~aL~~l~~~~~  443 (529)
                         .. +.   +    +.+.+...|..+...+ ...+ ..++..   +..=+.+|+..  .|.....++..-..+++.++
T Consensus       505 a~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~Ys---IsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP  581 (619)
T 3c2g_A          505 VFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYS---IDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP  581 (619)
T ss_dssp             HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTTT---SCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             hhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhheee---ccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence               11 11   1    2234445555554433 2222 222221   33334556543  36666777777777776654


Q ss_pred             hhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665          444 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       444 ~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  492 (529)
                      ....            .-.-  --..++-+.+|+|+++...|..++.+|
T Consensus       582 ~~Ad------------~W~i--~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          582 TRAD------------IWTI--DRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             THHH------------HSCC--CHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             chhc------------ccee--chHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            3221            0000  123467788999999999999999876

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.02  E-value=0.00028  Score=63.28  Aligned_cols=185  Identities=16%  Similarity=0.082  Sum_probs=127.8

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 009665           79 GVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA  158 (529)
Q Consensus        79 ~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  158 (529)
                      .+.++++.++..++..+      .             ...|..++.+++ +.+|..++..|   .               
T Consensus        58 ll~d~~~~VR~~AA~~l------~-------------~~~l~~L~~D~~-~~VR~~aA~~L---~---------------   99 (244)
T 1lrv_A           58 YLADPFWERRAIAVRYS------P-------------VEALTPLIRDSD-EVVRRAVAYRL---P---------------   99 (244)
T ss_dssp             GTTCSSHHHHHHHHTTS------C-------------GGGGGGGTTCSS-HHHHHHHHTTS---C---------------
T ss_pred             HhcCCCHHHHHHHHHhC------C-------------HHHHHHHccCcC-HHHHHHHHHHC---C---------------
Confidence            45788899998888742      0             123667788888 99999998642   1               


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhh
Q 009665          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ  238 (529)
Q Consensus       159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  238 (529)
                      .+.|..++.+++..||..++..+   .               ...+..++ .+.+..++..++..+   .          
T Consensus       100 ~~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~----------  147 (244)
T 1lrv_A          100 REQLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P----------  147 (244)
T ss_dssp             SGGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C----------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C----------
Confidence            14577888889999999888742   1               11233334 778889998888632   1          


Q ss_pred             hhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhH
Q 009665          239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT  318 (529)
Q Consensus       239 ~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~  318 (529)
                          .+.+..++.++++.|+..++..+   .               .+.+..++.++++.|+..++..+           
T Consensus       148 ----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l-----------  194 (244)
T 1lrv_A          148 ----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL-----------  194 (244)
T ss_dssp             ----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence                12344667788999999887751   1               13445677889999999888652           


Q ss_pred             HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHH
Q 009665          319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  393 (529)
Q Consensus       319 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~  393 (529)
                             ..+.|..++.++ ++.||..++..++                  .+.|..+ .++++.|+..|...|+
T Consensus       195 -------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          195 -------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             -------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             -------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence                   135677788888 9999999998753                  2344444 7779999998876543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.02  E-value=0.19  Score=46.11  Aligned_cols=179  Identities=15%  Similarity=0.176  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccC
Q 009665          258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN  337 (529)
Q Consensus       258 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  337 (529)
                      ...+...| ++.-++.+.++-+++.+++..+......++.++....+..|-..+....-.. .- -.+.+|.++..+.-.
T Consensus       260 vtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~-L~e~LPFi~~~i~~h  336 (619)
T 3c2g_A          260 IIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TP-LENILPFLLRLIEIH  336 (619)
T ss_dssp             HHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SC-CTTHHHHHHHHHHHC
T ss_pred             HHHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-cc-ccccchHHHHHhccC
Confidence            33444444 4444556778889999999999999999999999999999988776433111 11 125788888888644


Q ss_pred             CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-------ChhHHHHHHHHHHHHhc-------------
Q 009665          338 YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-------EFEIKKEAAWAISNATS-------------  397 (529)
Q Consensus       338 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-------~~~v~~~a~~aL~nl~~-------------  397 (529)
                      .+.++.......|+|+.++.....+..+..|.++.|...+...       +..-++.||..++|...             
T Consensus       337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~  416 (619)
T 3c2g_A          337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTP  416 (619)
T ss_dssp             CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred             CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecC
Confidence            4888999999999999999888888888999999999987642       33456667777776652             


Q ss_pred             CC--------CHHHHHHHHHcCChHHHHhccCCCC------HHHHHHHHHHHHHHH
Q 009665          398 GG--------SNEQIKFLVSQGCIKPLCDLLNCPD------PRIVTVCLEGLENIL  439 (529)
Q Consensus       398 ~~--------~~~~~~~l~~~~~l~~L~~lL~~~~------~~v~~~~l~aL~~l~  439 (529)
                      +|        +..+.-.+++.++++.|+.+|+.+.      -+++..++..+.-++
T Consensus       417 NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl  472 (619)
T 3c2g_A          417 NGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL  472 (619)
T ss_dssp             TSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred             CCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence            11        1334445566678888888886432      245555555554443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.02  E-value=0.047  Score=52.75  Aligned_cols=247  Identities=15%  Similarity=0.085  Sum_probs=146.3

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHH
Q 009665          169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER  248 (529)
Q Consensus       169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~  248 (529)
                      ++...+..|+..|.....+-|..++.     ++..++.++ .+.+..++..|...|..+|.+      ..+..+...|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            57899999999999999888876655     578899999 888899999999999999987      336788899999


Q ss_pred             hhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC-ChhhHHHHHhcCCh
Q 009665          249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQAL  327 (529)
Q Consensus       249 ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~l  327 (529)
                      +|+++++.-...+-++|..+...++.        +.+..++..+..+++.+|..++..|..-... .......-++.-++
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            99999888777777777777655432        2334444444445678888888888554432 11111111222345


Q ss_pred             HHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHh------cCChhHHHHHHHHHHHH----h
Q 009665          328 PCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLL------NAEFEIKKEAAWAISNA----T  396 (529)
Q Consensus       328 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~------~~~~~v~~~a~~aL~nl----~  396 (529)
                      ..+.++|++- ...--.-...+|..+-. .++...+.+++     .+.+...      ..|++.....+.++...    +
T Consensus       180 ~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~-----ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS  253 (507)
T 3u0r_A          180 TESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE-----LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS  253 (507)
T ss_dssp             HHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH-----HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred             HHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH-----HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence            5566666544 32222223333433322 23443443332     2333221      12444444444444333    2


Q ss_pred             cC-CCHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhh
Q 009665          397 SG-GSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAG  442 (529)
Q Consensus       397 ~~-~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~  442 (529)
                      .+ .+.....++++. +++.+-.+-... ..+.+...|.++..+....
T Consensus       254 ~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~  300 (507)
T 3u0r_A          254 KNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC  300 (507)
T ss_dssp             TTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC
T ss_pred             cCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCC
Confidence            22 245677776664 777666554321 1224555555555555443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.96  E-value=0.04  Score=48.47  Aligned_cols=185  Identities=11%  Similarity=0.139  Sum_probs=124.0

Q ss_pred             ChHHHHHHHHHHHHhccCCchhHHHHHHh-CcHHHHHHh-------cCCCCc-----chHHHHHHHHHHhhcCChhhHHH
Q 009665          254 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPSP-----SVLIPALRTVGNIVTGDDMQTQC  320 (529)
Q Consensus       254 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~l-------L~~~~~-----~v~~~al~~L~~l~~~~~~~~~~  320 (529)
                      +++-++.|+.-|+.=-+.-++....+..+ |.+..|++=       +..+.-     .-...|+..+..++. .++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            45567777776666444444444444443 655555432       222221     123456666666776 5556777


Q ss_pred             HHhcCChHHHHHHhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665          321 IINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (529)
Q Consensus       321 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  395 (529)
                      ++++++.-.|..+|....    -..+|-.+..+++.+.. ++++.+..+++.+++|..++.++.++.-.|.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            889899888999986542    24688899999999887 6788999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHc--------CChHHH-HhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          396 TSGGSNEQIKFLVSQ--------GCIKPL-CDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       396 ~~~~~~~~~~~l~~~--------~~l~~L-~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      ...  .....|++..        .++..+ ..+.+.+++.+.+.+.++...+...
T Consensus       173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            863  3444444321        122222 2344567777777777777666543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.91  E-value=0.019  Score=50.57  Aligned_cols=195  Identities=14%  Similarity=0.132  Sum_probs=128.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhh--HHhhcCChHHHHHh-------hcCCC-C---hHHHHHHHHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN--EVIQSGVVPRFIEF-------LSRDD-F---PQLQFEAAWAL  139 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~--~~i~~g~i~~Li~l-------L~~~~-~---~~v~~~a~~~L  139 (529)
                      +..++..|.+  ++.+..|+..|.+--..  .+...  .+-.-|.+..|++=       ++.+. +   ..-...|+..|
T Consensus         5 i~qli~~L~~--p~~Re~AL~eLsk~Re~--~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl   80 (268)
T 2fv2_A            5 IYQWINELSS--PETRENALLELSKKRES--VPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL   80 (268)
T ss_dssp             HHHHHHHTSS--TTTHHHHHHHHHHHTTT--CTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--chhHHHHHHHHHHhhhc--cccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence            4455655553  45688899988885332  22222  22355766666542       22221 0   12235666677


Q ss_pred             HHHhcCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhh-CCCchhHHHHHhcCChHHHHHHhccchh
Q 009665          140 TNIASGTSENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAK  213 (529)
Q Consensus       140 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~  213 (529)
                      ..+|+ +++.+..++++.+.-.|..+|..     +.+.+|-.++..+|.+. .++++.-..+++.++++.+++.+ ..++
T Consensus        81 QcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~Gs  158 (268)
T 2fv2_A           81 QCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGS  158 (268)
T ss_dssp             HHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSC
T ss_pred             HHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhcc
Confidence            77887 89999999999987777777755     33678999999999988 46667778888999999999999 5556


Q ss_pred             HHHHHHHHHHHhhhhcCCC--------CCchhhhhchHHHHHH-hhccCChHHHHHHHHHHHHhccCCc
Q 009665          214 LSMLRNATWTLSNFCRGKP--------QPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       214 ~~~~~~a~~~L~~l~~~~~--------~~~~~~~~~~l~~L~~-ll~~~d~~v~~~a~~~L~~l~~~~~  273 (529)
                      .-.+..|...+..+..++.        ...+..+..++..++. +...+++.+..+++++...|+++..
T Consensus       159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence            6666667777666655431        1222333444444443 3346678889999999999988753

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.22  E-value=0.13  Score=44.98  Aligned_cols=145  Identities=17%  Similarity=0.081  Sum_probs=104.7

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCR  192 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~~  192 (529)
                      .++....+.+++. .++|..|+..|+.. ...+         .+++.+.. +-..++..|++.+..+++.++. ..++  
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence            3455556667776 79999999998887 3111         23566666 5556889999999999999984 3332  


Q ss_pred             HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~  272 (529)
                            ..++.+.... .+.+..+++.++..+.--+.. + ........++|.|..+..+++.-|+..+.|.|..++...
T Consensus       139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                  1455666666 888999999999887654433 1 112233557788888888889999999999999999988


Q ss_pred             chhHHHHHH
Q 009665          273 NDKIQAVIE  281 (529)
Q Consensus       273 ~~~~~~~~~  281 (529)
                      ++.+..+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877665555

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.19  E-value=1  Score=43.73  Aligned_cols=297  Identities=11%  Similarity=0.055  Sum_probs=166.7

Q ss_pred             HHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009665          118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS  197 (529)
Q Consensus       118 ~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  197 (529)
                      .++...+ ++ +..+.-|+..|......-|+..+..     +..++.+..+++..||.+|+..|..+|.+ . .-..   
T Consensus        33 ~Il~~~k-g~-~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k---  100 (507)
T 3u0r_A           33 VILDGVK-GG-TKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR---  100 (507)
T ss_dssp             HHHHGGG-SC-HHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH---
T ss_pred             HHHHhcC-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh---
Confidence            3444433 34 7889999999999998788876654     58889999999999999999999999987 2 2222   


Q ss_pred             cCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC-CchhH
Q 009665          198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKI  276 (529)
Q Consensus       198 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~-~~~~~  276 (529)
                        +...|.++| +..++.-...+-++|..+...++       .+.+..+...+.+.++.+++.++..|..-... ..+..
T Consensus       101 --iaDvL~QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l  170 (507)
T 3u0r_A          101 --VADILTQLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVL  170 (507)
T ss_dssp             --HHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred             --HHHHHHHHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhc
Confidence              466788888 55555555666666666655432       34555555555567889999988888643311 11111


Q ss_pred             HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHHh------ccCCchhHHHHHHHH
Q 009665          277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWT  349 (529)
Q Consensus       277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL------~~~~~~~v~~~a~~~  349 (529)
                      ..-++.-++..+.+.|.+-...-....+.+|+.+-.... ...+.     +++.+....      ... +.+.......+
T Consensus       171 ~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C  244 (507)
T 3u0r_A          171 TKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQC  244 (507)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHH
Confidence            122222345556666654433333444455544433222 22222     233333332      112 33333322222


Q ss_pred             HH----HHhc--CCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHhccC
Q 009665          350 IS----NITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLN  421 (529)
Q Consensus       350 L~----nl~~--~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~  421 (529)
                      +.    -++.  .+.....++.+. ++|.+-.+-... ..+.+...+.++..++.+++ .+....++. -+...|..++-
T Consensus       245 ~~~ALP~FS~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP  322 (507)
T 3u0r_A          245 TRQAVPLFSKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMP  322 (507)
T ss_dssp             HHHHGGGCBTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSC
T ss_pred             HHHHHHHhccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCC
Confidence            22    2222  345555566554 888554433322 33478899999999988765 333322221 13334444432


Q ss_pred             CCC-------------H----HHHHHHHHHHHHHHHhhhh
Q 009665          422 CPD-------------P----RIVTVCLEGLENILKAGEA  444 (529)
Q Consensus       422 ~~~-------------~----~v~~~~l~aL~~l~~~~~~  444 (529)
                      .+.             +    ..++..+-++..+....+.
T Consensus       323 ~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~  362 (507)
T 3u0r_A          323 LPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPD  362 (507)
T ss_dssp             CCC--------------CCCHHHHHHHHHHHHHHHTTCTH
T ss_pred             CCcccccccccccccCcccchhHHHHHHHHHHHHhhhChh
Confidence            111             1    2346667777777655443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.73  E-value=1  Score=43.07  Aligned_cols=157  Identities=11%  Similarity=0.112  Sum_probs=101.9

Q ss_pred             HHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC----------CCChHHHHHHHHHHHHH
Q 009665           74 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNI  142 (529)
Q Consensus        74 ~~l~~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~----------~~~~~v~~~a~~~L~~l  142 (529)
                      ..++..|+++- .......+..|+.-+......-++.++ .+++..|+.+|..          ..+...+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            34566666543 222334567777666654444577777 5677888888741          11257889999999999


Q ss_pred             hcCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhc
Q 009665          143 ASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFN  209 (529)
Q Consensus       143 ~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~i~~l~~~l~  209 (529)
                      .. +......++. ...+..|...|.++.+.++..++..|+.+|..+. .. ...++          +..-+..++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            98 5555555554 5788999999999999999999999999996543 21 22222          2334666777774


Q ss_pred             cchhHHHHHHHHHHHhhhhcCCC
Q 009665          210 EHAKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       210 ~~~~~~~~~~a~~~L~~l~~~~~  232 (529)
                      ...+.+...++...+-.+....+
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCC
Confidence            44555666555555555555543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.55  E-value=2.3  Score=47.75  Aligned_cols=298  Identities=8%  Similarity=0.045  Sum_probs=167.0

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhc-CCCChHHHHHHHHHHHHHhcC----
Q 009665           73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG----  145 (529)
Q Consensus        73 l~~l~~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~-~~~~~~v~~~a~~~L~~l~~~----  145 (529)
                      +..++..+.++  +...+.+|-..|.++-...           ..+..+...|. .+.++.+|..|+..|.+....    
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            45555555554  6777888888887763221           13344444343 333389999999999987642    


Q ss_pred             -ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-c-hhHHHHHhcCChHHHHHHhccchhHHHHHH
Q 009665          146 -TSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDS-P-KCRDLVLSNGALMPLLAQFNEHAKLSMLRN  219 (529)
Q Consensus       146 -~~~~~~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~-~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~  219 (529)
                       +++.+.. +...++..+......   ....++...+.++..|+... + ..      .+.++.++.++..  ++.....
T Consensus        82 l~~e~k~~-Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~~--~~~~~e~  152 (1204)
T 3a6p_A           82 MSRLEKVY-LKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSKQ--GETQTEL  152 (1204)
T ss_dssp             SCHHHHHH-HHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHHT--CHHHHHH
T ss_pred             CCHHHHHH-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhcC--CHHHHHH
Confidence             2333333 333444544443221   45889999999999987431 1 11      1356667777632  3344666


Q ss_pred             HHHHHhhhhcCC---CCCchh-------h----hhchHHHHHHhhcc-------------------CChHHHHHHHHHHH
Q 009665          220 ATWTLSNFCRGK---PQPLFE-------Q----TRPALPALERLIHS-------------------NDDEVLTDACWALS  266 (529)
Q Consensus       220 a~~~L~~l~~~~---~~~~~~-------~----~~~~l~~L~~ll~~-------------------~d~~v~~~a~~~L~  266 (529)
                      ++.+|..++...   ......       .    ...+++.+..++..                   .+..+...++.++.
T Consensus       153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~  232 (1204)
T 3a6p_A          153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA  232 (1204)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence            777777776531   110000       0    11344444444432                   12456777788877


Q ss_pred             HhccCCchhHHHHHHhC--cHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh--hhHHHHHhc---CChHHHHHHhc----
Q 009665          267 YLSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINH---QALPCLLDLLT----  335 (529)
Q Consensus       267 ~l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~~---~~l~~L~~lL~----  335 (529)
                      +....-+  ...+.+..  +++.++.++.  ++.++..|+.||..++....  .....++..   ..+..++..+.    
T Consensus       233 ~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~  308 (1204)
T 3a6p_A          233 GYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG  308 (1204)
T ss_dssp             TTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred             HHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence            6655433  23344433  6777777665  46789999999999997542  221112211   11223444432    


Q ss_pred             ---cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 009665          336 ---QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  398 (529)
Q Consensus       336 ---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  398 (529)
                         +..+.++.+..+.++..++.   . ...++.           .++++.++.+..+++..+-..++.....+...
T Consensus       309 ~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          309 GGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence               11145667777777777762   1 222221           13577888888888878877777766666554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.46  E-value=0.69  Score=40.93  Aligned_cols=140  Identities=11%  Similarity=0.140  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC----C------CChHHHHHHHHHHHHHhcCChhhHHHHHh-CCC
Q 009665           90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGA  158 (529)
Q Consensus        90 ~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~  158 (529)
                      ..+..|+..+...+...++.+ ..+++..|+.+|..    +      .+.+.+..++.||..+.. +......++. .+.
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~   97 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG   97 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence            345555555544433446666 45667777776642    1      125778999999999998 5555555554 567


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhccchhHHHHHHHHHHHhh
Q 009665          159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSN  226 (529)
Q Consensus       159 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  226 (529)
                      +..+...|.+++..++..++..|+.+|..+. .. ...++          +..-..+++..+..+.+.+.+..+...+-.
T Consensus        98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~  177 (233)
T 2f31_A           98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA  177 (233)
T ss_dssp             HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            8999999999999999999999998885543 11 22222          222455566666434445555544444444


Q ss_pred             hhcCC
Q 009665          227 FCRGK  231 (529)
Q Consensus       227 l~~~~  231 (529)
                      +....
T Consensus       178 li~~~  182 (233)
T 2f31_A          178 LITPA  182 (233)
T ss_dssp             HHTTC
T ss_pred             HHCCC
Confidence            44443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.39  E-value=0.28  Score=43.49  Aligned_cols=163  Identities=16%  Similarity=0.130  Sum_probs=108.7

Q ss_pred             hhhHHHHHhcCChHHHHHHhccC----------CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChh
Q 009665          315 DMQTQCIINHQALPCLLDLLTQN----------YKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFE  383 (529)
Q Consensus       315 ~~~~~~~~~~~~l~~L~~lL~~~----------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~  383 (529)
                      ..+.+.+ ..+++..|+.+|...          .+.....+++.+|..+... ......++. .+.+..+...+.++.+.
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~  111 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPN  111 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence            3455555 345666666665321          1345677888888888765 566666664 55788888889888999


Q ss_pred             HHHHHHHHHHHHhcCCC-----HHHHHHH------HHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 009665          384 IKKEAAWAISNATSGGS-----NEQIKFL------VSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNT  451 (529)
Q Consensus       384 v~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~  451 (529)
                      ++..|+..|..++...+     ......+      -+..-...+++.++ ..+.+.+..++..+..++...+....    
T Consensus       112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~----  187 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----  187 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH----
T ss_pred             HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH----
Confidence            99999988888776432     1122222      12234666777777 45678888888888877766543321    


Q ss_pred             CccchHHHHHHhhchHHHHHHHhcCCCHHHHHHH
Q 009665          452 GGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  485 (529)
Q Consensus       452 ~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a  485 (529)
                        -...+..|...|..+.++.+....++++...-
T Consensus       188 --R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi  219 (233)
T 2f31_A          188 --RVHIRSELMRLGLHQVLQELREIENEDMKVQL  219 (233)
T ss_dssp             --HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred             --HHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence              12356667789999999999988888876553

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.33  E-value=0.13  Score=44.91  Aligned_cols=134  Identities=12%  Similarity=0.085  Sum_probs=97.9

Q ss_pred             cHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-HhccCCchhHHHHHHHHHHHHhc-CCHHHH
Q 009665          284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTISNITA-GNVNQI  361 (529)
Q Consensus       284 ~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~  361 (529)
                      .++....+..++...+|..|+..|+.+ . ..        ..+++.+.. +..++ ...|+..++.++..++. ..++  
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~-~~--------~~~L~~ir~~va~D~-~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S-KD--------KEILIFMRDEVSKDN-NWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHT-T-TS--------HHHHHHHHHTGGGCS-CHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHhc-c-Cc--------HHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHhcCHH--
Confidence            345555666788889999999999988 3 11        135666776 44455 89999999999999885 3343  


Q ss_pred             HHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcC----CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHH
Q 009665          362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  437 (529)
Q Consensus       362 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~----~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~  437 (529)
                            ..++.+.....+++..||+.|...+.-.+..    .+++.        +++.|..+..+++.-|+..+.++|..
T Consensus       139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~--------ll~iL~~L~~D~s~yVrKSVan~LrD  204 (240)
T 3l9t_A          139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE--------AIRRIADLKEDVSEYVRKSVGNALRD  204 (240)
T ss_dssp             ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH--------HHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH--------HHHHHHHhcCChHHHHHHHHHHHHHH
Confidence                  1678888999999999999999887543322    12222        46667777788888999999999999


Q ss_pred             HHHhhhh
Q 009665          438 ILKAGEA  444 (529)
Q Consensus       438 l~~~~~~  444 (529)
                      +.+..+.
T Consensus       205 ~SK~~Pd  211 (240)
T 3l9t_A          205 ISKKFPD  211 (240)
T ss_dssp             HHTTCHH
T ss_pred             HhhhCHH
Confidence            8877654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.05  E-value=0.83  Score=42.11  Aligned_cols=174  Identities=12%  Similarity=0.064  Sum_probs=103.5

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA----VPIFVRLLSS-PTDDVREQAVWALGNVAGDSP  189 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~  189 (529)
                      .+..+.++++.+.  +.+.-++.++.-++. ++.....+.+.+.    +..+...+.+ ..+..+-.++++++|+.....
T Consensus       104 ~l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~  180 (304)
T 3ebb_A          104 QLQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA  180 (304)
T ss_dssp             HHHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred             HHHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence            3456666665553  566777777777665 5555555544322    2233444443 346678899999999987654


Q ss_pred             hhHHHHHhcCChHHHHHHhc---cchhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhc-cCChHHHHHHHHH
Q 009665          190 KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIH-SNDDEVLTDACWA  264 (529)
Q Consensus       190 ~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~-~~d~~v~~~a~~~  264 (529)
                       .+..+..  ....++..+.   .+.+..++..++.++.|++... ..........++..+..++. ..|.+....++-+
T Consensus       181 -g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          181 -GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             -HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence             5666554  2344444432   3346677888888888887642 11122223345555666665 3588999999999


Q ss_pred             HHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009665          265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRH  294 (529)
Q Consensus       265 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  294 (529)
                      |+++...+.+..+..-..|+-..+-.....
T Consensus       258 LGtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          258 LGTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            999997765443322233544444444444

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.02  E-value=1.3  Score=40.79  Aligned_cols=185  Identities=16%  Similarity=0.145  Sum_probs=111.4

Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcC----ChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 009665          286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  361 (529)
Q Consensus       286 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  361 (529)
                      ..+.+++.-+ ...+.+++..+.-++. .+.....+.+..    ++..+...+.....+..+-.++.+++|+..+ +...
T Consensus       106 ~~l~kil~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~  182 (304)
T 3ebb_A          106 QILWKAINCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQ  182 (304)
T ss_dssp             HHHHHHHTSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHH
T ss_pred             HHHHHHHcCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhH
Confidence            4455555333 2456677777666554 332332222211    2223334443332556788999999999987 4455


Q ss_pred             HHHHH--cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCC----CHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHH
Q 009665          362 QAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEG  434 (529)
Q Consensus       362 ~~l~~--~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~----~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~a  434 (529)
                      +.++.  ..+++.+...+.+.+..++..++..+.|++...    +.+....     ++..+..+++ ..|.+..-.++-|
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence            55543  124444554444557889999999999998631    2222222     3344444443 4688999999999


Q ss_pred             HHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009665          435 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  490 (529)
Q Consensus       435 L~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~  490 (529)
                      |++++..+..            ..++....|..+.+..+... ..++|.+-|..+++
T Consensus       258 LGtL~~~~~~------------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~  302 (304)
T 3ebb_A          258 LGTLISDDSN------------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN  302 (304)
T ss_dssp             HHHHHTTCHH------------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred             HHHHHhCChh------------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            9999854322            35666667777777777654 56778888777765

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.82  E-value=2.3  Score=46.84  Aligned_cols=172  Identities=13%  Similarity=0.105  Sum_probs=110.1

Q ss_pred             hHHHHHHhccc---hhHHHHHHHHHHHhhhhc----CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009665          201 LMPLLAQFNEH---AKLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       201 i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~  273 (529)
                      +..+..++...   .++.+...+..+++.|..    ..+......+..+...+.+.+...+.+-+..++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            44455555321   244556666666655543    332223333556666777777788888899999999998652  


Q ss_pred             hhHHHHHHhCcHHHHHHhcCC-----C--CcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc-cCCchhHHHH
Q 009665          274 DKIQAVIEAGVCPRLVELLRH-----P--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKE  345 (529)
Q Consensus       274 ~~~~~~~~~~~~~~L~~lL~~-----~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~  345 (529)
                               ..++.|.+++..     .  ...++..|+++|.+++...+...        -+.++.++. ...++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence                     345666677632     1  23477889999999987554333        245677763 2338899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCCH
Q 009665          346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN  401 (529)
Q Consensus       346 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~  401 (529)
                      |+..|.... .+..         .+..+...+.. .+..|.......|.+++....+
T Consensus       534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            998885432 2222         34455666665 4788999999999999887655

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.57  E-value=1.3  Score=49.66  Aligned_cols=282  Identities=11%  Similarity=0.088  Sum_probs=155.9

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----CchhHHHHHhcCCh
Q 009665          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL  201 (529)
Q Consensus       129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~~~i  201 (529)
                      +..|.+|-..|..+.. ++         .....+...|  .+.+..+|..|+.+|-+....     +++.+..+ +    
T Consensus        27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H----
T ss_pred             hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H----
Confidence            6778888888877654 22         1233333433  346789999999999887632     22222222 2    


Q ss_pred             HHHHHHhccc------hhHHHHHHHHHHHhhhhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccC---
Q 009665          202 MPLLAQFNEH------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---  271 (529)
Q Consensus       202 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~---  271 (529)
                      ..++..+...      .+..++..++.+++.++... |.    .-..+++.++.++.+ ++.....++.+|..++..   
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence            2333433221      35677888888888888764 32    235778888888865 556677788888877632   


Q ss_pred             ----CchhHHH---HHHh---CcHHHHHHhcCC-------------------CCcchHHHHHHHHHHhhcCChhhHHHHH
Q 009665          272 ----TNDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCII  322 (529)
Q Consensus       272 ----~~~~~~~---~~~~---~~~~~L~~lL~~-------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~  322 (529)
                          ...+...   .+..   .++..+..++..                   .+..+...++.++.+...--+.  ..++
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence                1111111   1111   233333333422                   1234566777777766553221  2233


Q ss_pred             hcC--ChHHHHHHhccCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CCHHHHHHHHh--------cCChhHHHH
Q 009665          323 NHQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKE  387 (529)
Q Consensus       323 ~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~l~~L~~~l~--------~~~~~v~~~  387 (529)
                      +..  +++.+..++.   +++++..|+.+|..++...  ++....++..   ..+..++..+.        +.+.++.+.
T Consensus       245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence            332  6666666554   4578999999999999732  4433333321   11234455442        124566667


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHH-----------cCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665          388 AAWAISNATSGGSNEQIKFLVS-----------QGCIKPLCDLLNCPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       388 a~~aL~nl~~~~~~~~~~~l~~-----------~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~  440 (529)
                      .+..+..+..    .. ..++.           .++++.++.++.+++..+...++..-..+++
T Consensus       322 l~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~  380 (1204)
T 3a6p_A          322 LCQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR  380 (1204)
T ss_dssp             HHHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence            7777766652    11 11111           1346677777777776666666654444443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.53  E-value=0.51  Score=45.26  Aligned_cols=162  Identities=17%  Similarity=0.137  Sum_probs=110.4

Q ss_pred             ChhhHHHHHhcCChHHHHHHhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCCh
Q 009665          314 DDMQTQCIINHQALPCLLDLLTQ----------NYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEF  382 (529)
Q Consensus       314 ~~~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~  382 (529)
                      ...+.+.+. .+++..|+.+|..          ..+..+...++.||..+.-. ......++. ...+..|...+.+..+
T Consensus        99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~  176 (383)
T 3eg5_B           99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVP  176 (383)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred             ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCch
Confidence            345555555 4566777777631          11346677888888888765 556666764 5578999999998999


Q ss_pred             hHHHHHHHHHHHHhcCCC-----HHHHHHH------HHcCChHHHHhccCC-CCHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 009665          383 EIKKEAAWAISNATSGGS-----NEQIKFL------VSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGN  450 (529)
Q Consensus       383 ~v~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~~~~~~~~~~~~  450 (529)
                      .++..|+..|..++....     ......+      -+..-...++..|+. .+.+....++..|..++...+....   
T Consensus       177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~---  253 (383)
T 3eg5_B          177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---  253 (383)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH---
T ss_pred             HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH---
Confidence            999999999988887543     1112221      123447778888886 5778888888888877766543321   


Q ss_pred             CCccchHHHHHHhhchHHHHHHHhcCCCHHHHH
Q 009665          451 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE  483 (529)
Q Consensus       451 ~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~  483 (529)
                         --..+..|...|..+.+..|....++++..
T Consensus       254 ---R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~  283 (383)
T 3eg5_B          254 ---RVHIRSELMRLGLHQVLQELREIENEDMKV  283 (383)
T ss_dssp             ---HHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred             ---HHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence               123566677899999999998877877654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.34  E-value=0.76  Score=50.63  Aligned_cols=134  Identities=15%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             hHHHHHHhhcc----CChHHHHHHHHHHHHhcc----CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 009665          242 ALPALERLIHS----NDDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       242 ~l~~L~~ll~~----~d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~  313 (529)
                      .+..+..++.+    .++.++..++.+++.++.    ........++. .+...+.+.+...+..-+..++++|||+.. 
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-  469 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ-  469 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence            44455555553    356677777777776653    21110000111 233344555566667778889999999976 


Q ss_pred             ChhhHHHHHhcCChHHHHHHhcc------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--CChhHH
Q 009665          314 DDMQTQCIINHQALPCLLDLLTQ------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIK  385 (529)
Q Consensus       314 ~~~~~~~~~~~~~l~~L~~lL~~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~  385 (529)
                       +         ..++.|..++..      .....++..|+|+|.+++...|..+        -+.++.++.+  .++++|
T Consensus       470 -p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvR  531 (1056)
T 1lsh_A          470 -P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELR  531 (1056)
T ss_dssp             -G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHH
T ss_pred             -h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHH
Confidence             2         234556666532      1135688999999999998766643        3456666643  488999


Q ss_pred             HHHHHHHHHH
Q 009665          386 KEAAWAISNA  395 (529)
Q Consensus       386 ~~a~~aL~nl  395 (529)
                      ..|+..|...
T Consensus       532 iaA~~~Lm~t  541 (1056)
T 1lsh_A          532 IRSCIVFFES  541 (1056)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.87  E-value=3.1  Score=39.88  Aligned_cols=140  Identities=11%  Similarity=0.129  Sum_probs=88.3

Q ss_pred             HHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC----C------CChHHHHHHHHHHHHHhcCChhhHHHHHh-CCCh
Q 009665           91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGAV  159 (529)
Q Consensus        91 a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i  159 (529)
                      .+..|+..+...+...++.+. .+++..|+.+|..    .      .+...+..++.||..+.. +......++. .+++
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence            455555555544334466665 4566667776641    1      125778999999999998 4555555554 5788


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665          160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (529)
Q Consensus       160 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  227 (529)
                      ..+...|.++++.++..++..|+.+|..+. .. ...++          +..-+..++..+..+.+.+....++..+-.+
T Consensus       103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l  182 (386)
T 2bnx_A          103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  182 (386)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999988886543 21 22222          2234556676664445555555555555555


Q ss_pred             hcCCC
Q 009665          228 CRGKP  232 (529)
Q Consensus       228 ~~~~~  232 (529)
                      ....+
T Consensus       183 v~~~~  187 (386)
T 2bnx_A          183 ITPAE  187 (386)
T ss_dssp             HTTCS
T ss_pred             HCCCC
Confidence            55543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.52  E-value=1.9  Score=41.38  Aligned_cols=161  Identities=17%  Similarity=0.141  Sum_probs=105.4

Q ss_pred             hhHHHHHhcCChHHHHHHhcc----C------CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCChhH
Q 009665          316 MQTQCIINHQALPCLLDLLTQ----N------YKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEI  384 (529)
Q Consensus       316 ~~~~~~~~~~~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v  384 (529)
                      .+.+.+. .+++..|+.+|..    .      .+.....+++.||..+.-. ......++. .+.+..+...+.+..+.+
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~  116 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  116 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            4444443 3555555555521    1      1345677888888888765 555666665 456888888888889999


Q ss_pred             HHHHHHHHHHHhcCCCHH-----HHHHH------HHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 009665          385 KKEAAWAISNATSGGSNE-----QIKFL------VSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTG  452 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~~~~-----~~~~l------~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~  452 (529)
                      +..++..|..++....++     ....|      -+..-...|++.+. ..+.+....++..+..++...+....     
T Consensus       117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----  191 (386)
T 2bnx_A          117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----  191 (386)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----
Confidence            999998888777654311     11111      12234566777776 45678888888888877776554321     


Q ss_pred             ccchHHHHHHhhchHHHHHHHhcCCCHHHHHH
Q 009665          453 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  484 (529)
Q Consensus       453 ~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~  484 (529)
                       -...+.-|...|..+.+..|....++++...
T Consensus       192 -R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          192 -RVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             -HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             -HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence             1235677778899999999988888776543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=92.57  E-value=5.4  Score=35.55  Aligned_cols=99  Identities=6%  Similarity=0.067  Sum_probs=71.4

Q ss_pred             HHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 009665           75 AMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  153 (529)
Q Consensus        75 ~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  153 (529)
                      .+++.-+. .+ ..+...+...+.++-.. ++ .  +. ..+++.++.+..+.+ .++|...+..|...+...++.... 
T Consensus        19 ~lln~A~~~~~-~~kl~~L~qa~el~~~~-dp-~--ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~-   90 (257)
T 3gs3_A           19 DWCNELVIASP-STKCELLAKVQETVLGS-CA-E--LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH-   90 (257)
T ss_dssp             HHHHHHTTCCH-HHHHHHHHHHHHHHTTT-TG-G--GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred             HHHHHhhhcCc-HHHHHHHHHHHHHHHcc-CH-h--HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34443333 44 68888999999976543 22 1  22 247788888877766 899999999999988655544333 


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009665          154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVA  185 (529)
Q Consensus       154 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  185 (529)
                          +++.|..++.++++.+...++.+.+++.
T Consensus        91 ----~l~~L~~Ll~d~d~~V~K~~I~~~~~iY  118 (257)
T 3gs3_A           91 ----VINVVSMLLRDNSAQVIKRVIQACGSIY  118 (257)
T ss_dssp             ----HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                4688888999889999999999888874

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=91.21  E-value=10  Score=35.94  Aligned_cols=89  Identities=11%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009665           86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  165 (529)
Q Consensus        86 ~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  165 (529)
                      ..+...+..++.++-.. ++.   +. ..+++.++.+-.+.+ .++|...+..|...+....+...     .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps---Ll-~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT---LL-DNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG---GG-GGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH---HH-HHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46888888888875432 221   22 468999999998888 99999999999988875554433     246788889


Q ss_pred             hCCCCHHHHHHHHHHHHHhh
Q 009665          166 LSSPTDDVREQAVWALGNVA  185 (529)
Q Consensus       166 L~~~~~~v~~~a~~~L~nl~  185 (529)
                      |.++++.+...++.+.+++.
T Consensus       109 L~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHH
Confidence            98889999999999988874

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=90.55  E-value=5.3  Score=38.07  Aligned_cols=235  Identities=14%  Similarity=0.070  Sum_probs=116.2

Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      ....++...+..|+.++.++++.=|+..-.+|..+.+.-...|..+.. .+-..+.+.+.......-....+.++..+..
T Consensus       122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIin  200 (403)
T 3fga_B          122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN  200 (403)
T ss_dssp             HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHc
Confidence            334445556788999999999999999999998887544444443322 1223344444222222223345555555555


Q ss_pred             CCCCCc-hhhhhchHHHHHHhhccCChH-HHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665          230 GKPQPL-FEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (529)
Q Consensus       230 ~~~~~~-~~~~~~~l~~L~~ll~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L  307 (529)
                      +...+. .....-....|+.+-....-. --.....++..+...++.....++     ..|+..=-..+..-...-+.-+
T Consensus       201 Gfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~El  275 (403)
T 3fga_B          201 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNEL  275 (403)
T ss_dssp             HCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHHHH
Confidence            542222 222223344455555444322 123344444444444443333222     2222221112222222334445


Q ss_pred             HHhhcCCh-hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHH----hc
Q 009665          308 GNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA---GIIGPLVNLL----LN  379 (529)
Q Consensus       308 ~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~~l----~~  379 (529)
                      ..+...-+ ...+.+. ..++..+...+.++ ...|-+.|+....|      +.+..++..   .++|.+...+    ..
T Consensus       276 e~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~~  347 (403)
T 3fga_B          276 EEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKT  347 (403)
T ss_dssp             HHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            55554332 2222222 24667778888888 77787777654421      122222211   1344444433    33


Q ss_pred             C-ChhHHHHHHHHHHHHhcC
Q 009665          380 A-EFEIKKEAAWAISNATSG  398 (529)
Q Consensus       380 ~-~~~v~~~a~~aL~nl~~~  398 (529)
                      . +..++..+..++.-+...
T Consensus       348 HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          348 HWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             CSCHHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHHHHh
Confidence            3 678888888888777653

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=90.15  E-value=0.2  Score=29.68  Aligned_cols=39  Identities=33%  Similarity=0.470  Sum_probs=26.5

Q ss_pred             HHhhhccCCCCchHHHhhhHHHHHHHHHHhhHHHHHhhhh
Q 009665           11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRR   50 (529)
Q Consensus        11 ~~~~~~k~~~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~   50 (529)
                      +|...||+.....+..+||.+ ..+..|.+|-+.++..|+
T Consensus         2 PR~sqYK~k~~~~~q~~rRr~-~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSERRRR-LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTHHHHH-HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            578899994333444444444 688888889888877663

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.91  E-value=2  Score=38.99  Aligned_cols=133  Identities=15%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh--ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHH
Q 009665          299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEACWTISNITAGNVNQIQAIIE--AGIIGPLV  374 (529)
Q Consensus       299 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~l~~L~  374 (529)
                      ....|+..|--++..-....+ ++... .+.|..++  ... ++.+++.|+.+|+...+++|..+..+.+  ..++..++
T Consensus        44 ~le~aLD~L~ElSHDi~~G~K-I~~~e-f~lL~nL~~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf  120 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGYK-IITHE-FALLANLSLNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM  120 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHHH-HHHHH-HHHHHHHHHCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhhH-HHhCc-HHHHHHHHhhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence            456677777777664333333 33211 34444433  333 6779999999999999999999988876  34566666


Q ss_pred             HHHhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC--CHHHHHHHHHHHHHHHH
Q 009665          375 NLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILK  440 (529)
Q Consensus       375 ~~l~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~v~~~~l~aL~~l~~  440 (529)
                      .-|..       ...-+++.-+.+|.-|+.... .+     ....+..|.+++...  ++.++..++..+..++.
T Consensus       121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            55543       233566777777777776531 11     134567777777666  89999999999998885

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=88.63  E-value=1.9  Score=34.33  Aligned_cols=76  Identities=12%  Similarity=0.204  Sum_probs=52.8

Q ss_pred             ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhh-chHHHHHHHhcCCC--------HHHH
Q 009665          412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-EGLEKIENLQSHDN--------TEIY  482 (529)
Q Consensus       412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~~~l~~L~~~~~--------~~v~  482 (529)
                      +++.|..-|...++.++..+|.+|..++..+..           .|...+.+. ..+..+.+....++        ..|+
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~-----------~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR  118 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS-----------EFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR  118 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH-----------HHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH-----------HHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence            567788888888899999999999999876532           345555444 22333333333333        6799


Q ss_pred             HHHHHHHHhhCCCCCC
Q 009665          483 EKAVKILETYWVEEDE  498 (529)
Q Consensus       483 ~~a~~il~~~~~~~~~  498 (529)
                      .+|..+++-+|+.+..
T Consensus       119 ~~AkEl~~ll~d~~~~  134 (140)
T 1vdy_A          119 ETAHETISAIFSEENG  134 (140)
T ss_dssp             HHHHHHHHHHTCCSSC
T ss_pred             HHHHHHHHHHhCcCCC
Confidence            9999999999986654

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=88.21  E-value=6  Score=35.92  Aligned_cols=151  Identities=12%  Similarity=0.081  Sum_probs=94.2

Q ss_pred             chHHHHHHhhccC------ChHHHHHHHHHHHHhccCCchhHHHHH-HhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 009665          241 PALPALERLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       241 ~~l~~L~~ll~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~  313 (529)
                      .-+..+..++.+.      |.+....++..|..++..-......+- +..++..|+ +.....+.++..|.++|+.....
T Consensus        22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN  100 (315)
T 3qml_C           22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN  100 (315)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence            3344455555554      445677788888877765433333232 334444444 33445567899999999999999


Q ss_pred             ChhhHHHHHhc--CChHHHHHHhcc----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--Chh
Q 009665          314 DDMQTQCIINH--QALPCLLDLLTQ----N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFE  383 (529)
Q Consensus       314 ~~~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~  383 (529)
                      ++.....+.+.  .++..+..-|..    .  ....+.+.-+.+|..|...+.+.     ....+..|.+++...  ++.
T Consensus       101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~  175 (315)
T 3qml_C          101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQ  175 (315)
T ss_dssp             CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHH
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHH
Confidence            99888877642  233333322222    1  13456777778888887764211     134667788887777  889


Q ss_pred             HHHHHHHHHHHHhc
Q 009665          384 IKKEAAWAISNATS  397 (529)
Q Consensus       384 v~~~a~~aL~nl~~  397 (529)
                      +|..++..+..+..
T Consensus       176 ~k~Kvl~li~d~f~  189 (315)
T 3qml_C          176 LQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc
Confidence            99999998888763

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=86.41  E-value=12  Score=36.31  Aligned_cols=236  Identities=14%  Similarity=0.057  Sum_probs=120.9

Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      .....++...+..|+.++.++++.=|+....+|..+.+.-...|..+.. .+-..+.+.+.......-...++.+++.+.
T Consensus       154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIi  232 (449)
T 2npp_B          154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII  232 (449)
T ss_dssp             TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred             hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence            3444556667888999999999999999999998886544334444332 122334444433222233445666777776


Q ss_pred             cCCCCC-chhhhhchHHHHHHhhccCChHH-HHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHH
Q 009665          229 RGKPQP-LFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  306 (529)
Q Consensus       229 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~  306 (529)
                      .+...+ ......-....|+.+.....-.. -.....++..+...++.....+     +..|+..=-..+..-...-+.-
T Consensus       233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~e  307 (449)
T 2npp_B          233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNE  307 (449)
T ss_dssp             SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHH
T ss_pred             hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHH
Confidence            665222 22222333445555555443222 2233444444444443333322     2222222111222222234444


Q ss_pred             HHHhhcCC-hhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHHhc---
Q 009665          307 VGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN---  379 (529)
Q Consensus       307 L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~l~~L~~~l~~---  379 (529)
                      |..+.... +...+.+. ..++..+..++.++ ...|-+.|+....|     + .+..++.   ..++|.++..|..   
T Consensus       308 leeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~-~i~~li~~n~~~IlPii~p~L~~~s~  379 (449)
T 2npp_B          308 LEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSK  379 (449)
T ss_dssp             HHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----H-HHHHHHHhchhhhHHhhHHHHHHHHH
Confidence            55555432 22333222 24677788888887 77888777654432     1 1112222   1145666665532   


Q ss_pred             -C-ChhHHHHHHHHHHHHhcC
Q 009665          380 -A-EFEIKKEAAWAISNATSG  398 (529)
Q Consensus       380 -~-~~~v~~~a~~aL~nl~~~  398 (529)
                       . +..++..|..++.-+...
T Consensus       380 ~HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          380 THWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             CCSSTTHHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHHHHHH
Confidence             2 567888888777766543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=83.47  E-value=3.5  Score=33.89  Aligned_cols=73  Identities=14%  Similarity=0.235  Sum_probs=54.8

Q ss_pred             ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcC-CCHHHHHHHHHHHH
Q 009665          412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  490 (529)
Q Consensus       412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~-~~~~v~~~a~~il~  490 (529)
                      ++..|..-|.+.++.++..+|..|..+++.+..           .|...+.....++.+..+... .+++|++++..+|.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~-----------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~  121 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK-----------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMV  121 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH-----------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-----------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            355666667788999999999999998877532           356666666777777777544 67899999999998


Q ss_pred             hhCCC
Q 009665          491 TYWVE  495 (529)
Q Consensus       491 ~~~~~  495 (529)
                      .+-..
T Consensus       122 ~W~~~  126 (163)
T 1x5b_A          122 EWSEE  126 (163)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87553

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=83.00  E-value=2.4  Score=33.93  Aligned_cols=72  Identities=8%  Similarity=0.048  Sum_probs=56.8

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~  440 (529)
                      .+..+..-|.++++.++..|+..|-.++.+++......+....++..|..++...++.|+..++..+.....
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            455566677888999999999999999998887776666666677777777777888999999888876654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=82.07  E-value=3.6  Score=33.17  Aligned_cols=71  Identities=8%  Similarity=-0.072  Sum_probs=57.5

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL  439 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~  439 (529)
                      .+..|..-+.++++.++..|+..|-.+..+++..+...+....++..|..++..      .++.|+..++..|....
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            355666677889999999999999999999887887777777888889988864      46788888887776554

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=81.86  E-value=4  Score=32.94  Aligned_cols=72  Identities=8%  Similarity=-0.050  Sum_probs=58.8

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK  440 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~~  440 (529)
                      .+..|..-+.+.++.++..|+..|-.+..++...+...+....++..|..++..      .++.|+..++..|.....
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            455666777888999999999999999999888877777777888888888863      577899998888887654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.56  E-value=3  Score=34.33  Aligned_cols=71  Identities=4%  Similarity=-0.014  Sum_probs=55.1

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENIL  439 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~~l~aL~~l~  439 (529)
                      .+..|..-|.++++.++..|+..|-.+..++...+...+....++..|..++.. .++.|+..++..|....
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~  124 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS  124 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            345566677888999999999999999999887777666666777777777764 66788888887666544

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=81.28  E-value=32  Score=33.33  Aligned_cols=238  Identities=15%  Similarity=0.138  Sum_probs=122.9

Q ss_pred             hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 009665          107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVA  185 (529)
Q Consensus       107 ~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~  185 (529)
                      .+..++..++-.|+.++.+++ +.-|...-.+|..|-..-...|..+.. .+-..+.+++.. ....-....+.+++.+.
T Consensus       155 ~k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIi  232 (449)
T 2npp_B          155 AKKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII  232 (449)
T ss_dssp             GGGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred             hhhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence            456677788899999999998 888888888888776644445544432 222445555533 22222234666777776


Q ss_pred             CCC-----chhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHH
Q 009665          186 GDS-----PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD  260 (529)
Q Consensus       186 ~~~-----~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~  260 (529)
                      .+-     ++.+..+     ...|+.+.....-...-.....++..++..+|..    ...++..|++.=-..+..-...
T Consensus       233 nGfa~PLKeehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L----~~~vi~~LLk~WP~tns~Kevl  303 (449)
T 2npp_B          233 NGFALPLKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTL----TEPVVMALLKYWPKTHSPKEVM  303 (449)
T ss_dssp             SSCCSSCCHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGG----HHHHHHHHHHTCCSSCHHHHHH
T ss_pred             hccCCCCcHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHh----HHHHHHHHHHhCCCCCchHHHH
Confidence            331     1221111     1222223211111112233445555544433211    1223333333222334333333


Q ss_pred             HHHHHHHhccCC-chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh---cCChHHHHHHhcc
Q 009665          261 ACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQ  336 (529)
Q Consensus       261 a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~---~~~l~~L~~lL~~  336 (529)
                      -+.-|..+...- +.....+. ..++..+..++.+++..|...|+..+.|     +.... ++.   ..++|.+...|..
T Consensus       304 FL~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~-li~~n~~~IlPii~p~L~~  376 (449)
T 2npp_B          304 FLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMS-LISDNAAKILPIMFPSLYR  376 (449)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHH-HHHTTHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHH-HHHhchhhhHHhhHHHHHH
Confidence            444444444332 22222222 2567778888888888888888766533     21111 221   1345666665522


Q ss_pred             ----CCchhHHHHHHHHHHHHhcCCHHHHH
Q 009665          337 ----NYKKSIKKEACWTISNITAGNVNQIQ  362 (529)
Q Consensus       337 ----~~~~~v~~~a~~~L~nl~~~~~~~~~  362 (529)
                          .=+..++..|..++.-+...++....
T Consensus       377 ~s~~HWn~~V~~la~~vlk~l~e~d~~lf~  406 (449)
T 2npp_B          377 NSKTHWNKTIHGLIYNALKLFMEMNQKLFD  406 (449)
T ss_dssp             CTTCCSSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHCHHHHH
Confidence                11467899999999888877666443

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=80.98  E-value=3.6  Score=32.88  Aligned_cols=72  Identities=14%  Similarity=0.272  Sum_probs=53.6

Q ss_pred             ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009665          412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  491 (529)
Q Consensus       412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~  491 (529)
                      ++..|..-|.+.++.++..++..|..+++.+..           .|...+.....++.+..+....+++|+++...++..
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~-----------~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~  111 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK-----------IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE  111 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-----------HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH-----------HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            355566667778899988999988888876532           255556556667777777666789999999999987


Q ss_pred             hCC
Q 009665          492 YWV  494 (529)
Q Consensus       492 ~~~  494 (529)
                      +-.
T Consensus       112 W~~  114 (140)
T 3ldz_A          112 WTD  114 (140)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=80.87  E-value=5.8  Score=32.89  Aligned_cols=73  Identities=15%  Similarity=0.220  Sum_probs=55.8

Q ss_pred             ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhc------CCCHHHHHHH
Q 009665          412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  485 (529)
Q Consensus       412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~------~~~~~v~~~a  485 (529)
                      ++..|..-+.+.++.++..+|..|..+++.+..           .|...+.....++.|..+..      ..+.+|++++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~-----------~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  119 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR-----------RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV  119 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-----------HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-----------HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence            355666777789999999999999999887543           25666777777888888764      3468999999


Q ss_pred             HHHHHhhCCC
Q 009665          486 VKILETYWVE  495 (529)
Q Consensus       486 ~~il~~~~~~  495 (529)
                      ..+|..+-..
T Consensus       120 l~li~~W~~~  129 (171)
T 1juq_A          120 IELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999877543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=80.63  E-value=2.4  Score=34.25  Aligned_cols=74  Identities=14%  Similarity=-0.002  Sum_probs=58.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCC-----CChHHHHHHHHHHHHHhc
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIAS  144 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~-----~~~~v~~~a~~~L~~l~~  144 (529)
                      +.+..+.+.|++.++.++..|+..|-.+..+-......++....++..|++++...     .++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999999988765444456666778899999998741     237899988888877765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	529
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-135
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-96
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-46
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-23
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-11
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-21
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	8e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-14
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-10
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-10
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	3e-12
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-12
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	1e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	3e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	1e-04

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  399 bits (1026), Expect = e-135
 Identities = 268/503 (53%), Positives = 341/503 (67%), Gaps = 17/503 (3%)

Query: 10  EVRRSKYKVA--VDAEEGRRRREDNMVEIRKNKREESLLKKRR---------EGLQAHQP 58
           E RR+ +K      A+E RRRR+   VE+RK KR+E+L K+R             +    
Sbjct: 4   EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 63

Query: 59  LTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
           ++      ++  + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR
Sbjct: 64  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 123

Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
            +EF+  +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+
Sbjct: 124 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183

Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE 237
           WALGNVAGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP + 
Sbjct: 184 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWS 242

Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
               ALP L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S 
Sbjct: 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 302

Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
            V  PALR VGNIVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGN 361

Query: 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKP 415
             QIQA+I+A +I PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKP
Sbjct: 362 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 421

Query: 416 LCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 475
           LCDLL   D RI+ V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q 
Sbjct: 422 LCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGMEKIFNCQQ 480

Query: 476 HDNTEIYEKAVKILETYWVEEDE 498
           ++N +IYEKA KI+ETY+ EE++
Sbjct: 481 NENDKIYEKAYKIIETYFGEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  297 bits (761), Expect = 2e-96
 Identities = 203/427 (47%), Positives = 282/427 (66%), Gaps = 12/427 (2%)

Query: 72  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73

Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133

Query: 192 RDLVLSNGALMPLLAQFNEH----AKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPAL 246
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K   P  +     LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193

Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253

Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366
           +GNIVTG D QTQ +I+  AL     LL  N K +I+KEA WT+SNITAG  +QIQ ++ 
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312

Query: 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 426
            G++  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372

Query: 427 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 486
           I+ V L+ + NI +A E        G     +  I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 373 IIQVILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 426

Query: 487 KILETYW 493
            ++E Y+
Sbjct: 427 NLIEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (420), Expect = 2e-46
 Identities = 60/455 (13%), Positives = 125/455 (27%), Gaps = 69/455 (15%)

Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
           +P+ +++LS  D  + Q   A+ + +         + V   G +   V LL SP  +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
            A  AL N+   S   +        +   ++         + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 236 FEQTRPALPALERLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 280
                      +R+I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--- 337
            +G+   L+  +++   +           +    ++  +           L+   +N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 338 ----------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387
                         +              N      +  +  I   +NL+  ++ +   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 388 AAWAISNATSGGSNEQI-----KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 442
           A        +               + +  +  +  LL   +  +V      L N+ +  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 443 EAEKNMGNTGGVNL----------------------------------FAQAIDDAEGLE 468
              + MGN     +                                   A+    +  L 
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 469 KIENL-QSHDNTEIYEKAVKILETYWVEEDEDEPL 502
            I NL +S  + +  E A  +L   W  ++    L
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 4e-17
 Identities = 44/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 173 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------HAKLSMLRN 219
            R      E  +  L N++                    A   +       +    M+ N
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 220 ATWTLSNFCRGKPQPLFEQTRPAL--PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277
                       P+              L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 278 A-----VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332
                  ++    P++  LL+  +  V+      + N+          ++ +Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 333 LLTQNYKKS-----IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 386
           LLT +   +     I   AC+T+ N+ A      +    + ++  ++NL  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 387 EAAWAISN 394
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 4e-16
 Identities = 31/304 (10%), Positives = 82/304 (26%), Gaps = 21/304 (6%)

Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 255
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG--GICKLVDLLRSPNQ 58

Query: 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315
            V   A  AL  L   +                V LLR    + +   L  +   ++  D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 316 MQTQCIINHQALPCLLDLL--------------TQNYKKSIKKEACWTISNITAGNVNQI 361
              + +I          ++               +     +   A   + N+++ +  + 
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC-DLL 420
                +G+I  L+  + N     + +     +      +             + L  +  
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 421 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHDNT 479
           N    +  T C     + +     +  +         +  +  ++ +   +  +      
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 480 EIYE 483
              E
Sbjct: 299 ATLE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 108 NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 167
              ++   +P+      +     +    A  L+N++         V+ +   P   RLL+
Sbjct: 325 LIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLT 381

Query: 168 S------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221
           S       ++D+   A + + N+    P+      S+  L  ++      A       A 
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 222 WTLSNFCRGK 231
             LS+    K
Sbjct: 442 LLLSDMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-23
 Identities = 70/476 (14%), Positives = 127/476 (26%), Gaps = 87/476 (18%)

Query: 82  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
           ++D             L        +  + +SG +P  ++ L       + F A   L N
Sbjct: 71  TNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHN 127

Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
           +          V   G +   V LL+             L  +A  + + + ++L++G  
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDA 261
             L+     +    +L   +  L                  + AL   +      ++ + 
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321
            W L  LSD    +       G+   LV+LL     +V+  A   + N+   +      +
Sbjct: 248 LWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304

Query: 322 I-----------------------------------------------NHQALPCLLDLL 334
                                                            H  LP ++ LL
Sbjct: 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 364

Query: 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394
                  + K     I N+     N    + E G I  LV LL+ A  + ++  +   + 
Sbjct: 365 HPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 395 ATSGGS--------------------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 434
                                           +     I     LL  P   I  V    
Sbjct: 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 483

Query: 435 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 490
           L  + +  EA             A+AI+       +  L    N  +   A  +L 
Sbjct: 484 LCELAQDKEA-------------AEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (241), Expect = 3e-22
 Identities = 64/485 (13%), Positives = 127/485 (26%), Gaps = 65/485 (13%)

Query: 70  LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDD 127
             ++P +   +  +D+ +   A     +L   E        I     +V   +  +   +
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE---ASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 128 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
             +     A  L N++    E    +   G +P  V++L SP D V   A+  L N+   
Sbjct: 73  DVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131

Query: 188 SPKCRDLVLSNGALMPLLAQ---------------------------------------- 207
               +  V   G L  ++A                                         
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191

Query: 208 --FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL 265
                +    +L   +  L                  + AL   +      ++ +  W L
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251

Query: 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 325
             LSD    +       G+   LV+LL     +V+  A   + N+   +      +    
Sbjct: 252 RNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308

Query: 326 ALPCLLDLLTQNYKKSIKKE----ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 381
            +  L+  + +   +    E    A   +++          A+     +  +V LL    
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Query: 382 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP---------RIVTVCL 432
                +A   +    +            QG I  L  LL                    +
Sbjct: 369 HWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 427

Query: 433 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 492
           EG+            +            I     +     L       I   A  +L   
Sbjct: 428 EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487

Query: 493 WVEED 497
             +++
Sbjct: 488 AQDKE 492

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (210), Expect = 2e-18
 Identities = 58/363 (15%), Positives = 114/363 (31%), Gaps = 27/363 (7%)

Query: 99  LSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 158
           L+         ++ SG     +  +    + +L       +  + S  S N   +++ G 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 218
           +      L+ P+  + +  +W L N++  + K   +    G L+ LL   + +       
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 219 NATWTLSNFCRGKPQPLFEQTRPALPAL--ERLIHSNDDEVLTDACWALSYLSDGTNDKI 276
             +    N  + K          AL           +  E    A   L+          
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
            AV      P +V+LL  PS   LI A   +   +         +    A+P L+ LL +
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 337 NYKK---------------------SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375
            ++                       I +     +  +     N+   I     I   V 
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQ 467

Query: 376 LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 435
           LL +    I++ AA  +          +   + ++G   PL +LL+  +  + T     L
Sbjct: 468 LLYSPIENIQRVAAGVLCELAQDKEAAEA--IEAEGATAPLTELLHSRNEGVATYAAAVL 525

Query: 436 ENI 438
             +
Sbjct: 526 FRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (191), Expect = 6e-16
 Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 2/167 (1%)

Query: 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 331
            N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391
             +         +    T+ N++        AI ++G I  LV +L +    +   A   
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 392 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 438
           + N            +   G ++ +  LLN  + + + +  + L+ +
Sbjct: 125 LHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 7e-11
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 44/172 (25%)

Query: 98  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157
           L+ +      +   ++ +     +F+      ++      AL  +A     N  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 217
            +P+FV+LL SP ++++  A   L  +A D  +  + + + GA                 
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGAT---------------- 503

Query: 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269
                                       L  L+HS ++ V T A   L  +S
Sbjct: 504 --------------------------APLTELLHSRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 2e-21
 Identities = 46/260 (17%), Positives = 89/260 (34%), Gaps = 9/260 (3%)

Query: 101 IERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160
           +E+      V+   + P   E     D  Q +  A   L ++     +N         + 
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMH 61

Query: 161 IFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 219
           + V R L +    +R +A   +G  + +    ++ VL  GAL  LL   +  A  ++   
Sbjct: 62  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 121

Query: 220 ATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278
           A + +S   R +    L          L R +     ++   + + L  L  G  +    
Sbjct: 122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 181

Query: 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-----HQALPCLLDL 333
           +   G+  +LV L+R          L  + ++VT      +          + L     L
Sbjct: 182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 241

Query: 334 LTQNYKKSIKKEACWTISNI 353
           L Q+ +   + E C  +   
Sbjct: 242 LQQHEEYQEELEFCEKLLQT 261

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 2/118 (1%)

Query: 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-F 382
            Q +P       Q   +  ++ A   ++++   N++      +   +  LV   L A   
Sbjct: 15  SQPMPPTAGEAEQAADQQEREGALELLADL-CENMDNAADFCQLSGMHLLVGRYLEAGAA 73

Query: 383 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 440
            ++  AA  I   +   +  Q + L      K L  L       +    L  +  +++
Sbjct: 74  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 131

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 48/289 (16%), Positives = 91/289 (31%), Gaps = 29/289 (10%)

Query: 73  LPAMVAGVWSDDRN--IQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
           L A++ G+  ++ +  ++L AT      L   ++    E  +  ++    E     D  +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231

Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
           ++  A   L  I S   +     +      I +  + S  D+V  Q +    NV  +   
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291

Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ------------ 238
                             ++      L+     L+     + +   +             
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 351

Query: 239 -----------TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 287
                          LP ++  I + D      A  A   + +G        +     P 
Sbjct: 352 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 411

Query: 288 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336
           L+EL++ PS  V   A  TVG I    ++  +  IN   L  LL  L +
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 7/192 (3%)

Query: 60  TNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
              + +D   L+ +         +       +    +       S    +     +VP  
Sbjct: 266 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 325

Query: 120 IEFLSRDDFPQL--QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 177
            + L++ D       +    A        +      I    +P     + +P    R+ A
Sbjct: 326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAA 385

Query: 178 VWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           V A G +  G  P     ++     MP L +  +   + +   A WT+   C   P+   
Sbjct: 386 VMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 443

Query: 237 EQTR--PALPAL 246
                 P L  L
Sbjct: 444 NDVYLAPLLQCL 455

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 5e-12
 Identities = 33/299 (11%), Positives = 94/299 (31%), Gaps = 13/299 (4%)

Query: 95  FRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154
             +L        +   +   +  R    +++ +   +Q EA   + ++ S          
Sbjct: 111 IGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH 170

Query: 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 214
               +   +  L+SP   VR++ + ALG++          ++    +  LL++ +++  +
Sbjct: 171 PS-ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSKNDSM 225

Query: 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274
           S  R     ++   R     + E     +P + +  + +DDE+      A          
Sbjct: 226 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 285

Query: 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334
           ++   +   +    ++ L +       P           + M      +           
Sbjct: 286 EVYPHVST-IINICLKYLTYD------PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 338

Query: 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393
             +    +++ A   +  + +     +    +  +   L++     E  +K +   A  
Sbjct: 339 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT-VSPALISRFKEREENVKADVFHAYL 396

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 7e-09
 Identities = 48/340 (14%), Positives = 99/340 (29%), Gaps = 50/340 (14%)

Query: 30   EDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQL 89
               + E+    R   L       +            +N     L  M+ G          
Sbjct: 729  GSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALT 788

Query: 90   DATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSE 148
               + +     +             VV +FI +  +      ++  A  +L  +      
Sbjct: 789  HKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL 848

Query: 149  NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA---------------GDSPKCRD 193
            + ++ +      + +   SSP+++V+  A +ALG+++                  PK + 
Sbjct: 849  SGQLEL----KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQY 904

Query: 194  LVLSN-----------------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
            L+L +                   +  LL +  E A+          L       P+ L 
Sbjct: 905  LLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL- 963

Query: 237  EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
                  LP L+  + S      +    A+ +        I  +++       ++ L  P 
Sbjct: 964  ------LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPD 1016

Query: 297  PSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLL 334
             +V   AL T  +       +   I +     LP L +  
Sbjct: 1017 LNVRRVALVTFNSAA---HNKPSLIRDLLDTVLPHLYNET 1053

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 40/267 (14%), Positives = 84/267 (31%), Gaps = 10/267 (3%)

Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188
              +F A   L       S       +   V + ++LL     +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 189 PKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245
            + +   + +  L   +    E         L+     L     G         +     
Sbjct: 77  KEYQVETIVD-TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
              +    D  V  +A   ++ +       +     + +   L+  L  P  +V    + 
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTII 194

Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365
            +G++V          +    +  LL  L++N   S  +     I+ I+    ++I   +
Sbjct: 195 ALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL 250

Query: 366 EAGIIGPLVNLLLNAEFEIKKEAAWAI 392
           E  II  +V      + E+++    A 
Sbjct: 251 EK-IIPLVVKFCNVDDDELREYCIQAF 276

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 15/178 (8%)

Query: 82   SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
               + + L +  +     S+    P  E I + ++               +   A  L  
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-----HCECAEEGTRNVVAECLGK 954

Query: 142  IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201
            +     E          +P     L S +   R   V A+     D P+  D +L N   
Sbjct: 955  LTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--C 1004

Query: 202  MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 259
            +    +  E   L++ R A  T ++    KP  + +     LP L        + +  
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 36/252 (14%), Positives = 89/252 (35%), Gaps = 29/252 (11%)

Query: 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305
           LE++  S+D +    A   L       + K+    E  V   +++LL   +  V   A++
Sbjct: 9   LEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67

Query: 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-----NVNQ 360
            +G +V    ++   +     +  L   +  + K+ ++  +   +  +        + + 
Sbjct: 68  CLGPLV--SKVKEYQVE--TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSA 122

Query: 361 IQAIIEAGIIGPLVNLLLNAE-FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 419
           + A +   I G L + +   E   ++ EA   +++  S      + F  S   +  L   
Sbjct: 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS--ILTCLLPQ 180

Query: 420 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 479
           L  P   +    +  L +++ +           G  +F   I+       +  L  +D+ 
Sbjct: 181 LTSPRLAVRKRTIIALGHLVMS----------CGNIVFVDLIEHL-----LSELSKNDSM 225

Query: 480 EIYEKAVKILET 491
                 ++ +  
Sbjct: 226 STTRTYIQCIAA 237

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 49/309 (15%), Positives = 99/309 (32%), Gaps = 13/309 (4%)

Query: 82  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 141
           S+D   +  +    +  +           +   +    +  +     P ++      +T 
Sbjct: 57  SEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITT 114

Query: 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-- 199
           IAS              +P    LL S   +  E A  AL  +  DS +  D  + +   
Sbjct: 115 IASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 170

Query: 200 -ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 258
             ++P   QF +H+   +  +A   ++ F   + Q L          L  L    + EV 
Sbjct: 171 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVR 230

Query: 259 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318
            + C AL  L +   D++   +   +   +++  +    +V   AL      +T  +   
Sbjct: 231 KNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAEQPI 286

Query: 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378
              +  + LP L+ +L    K S                +   +  I             
Sbjct: 287 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQ 346

Query: 379 NAEFEIKKE 387
           + E  I++E
Sbjct: 347 HDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 8e-07
 Identities = 47/384 (12%), Positives = 103/384 (26%), Gaps = 24/384 (6%)

Query: 83  DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNI 142
           D+ +     +    +  S      +  V +  ++P  +  L    F          +  +
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419

Query: 143 ASGTSENTRVVIDHGA--VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200
            +      + +I +    +P  ++ LS     VR    W L   A               
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479

Query: 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 260
           +  LL +  +  K  +   A    +         L       L  L         + L  
Sbjct: 480 MTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI 538

Query: 261 ACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDM- 316
              A+  L+D     + +      + P L++           L P L  + ++ T     
Sbjct: 539 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG 598

Query: 317 --------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 362
                           Q  +    L        +   K     A   +S +  G    I+
Sbjct: 599 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 658

Query: 363 AII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 421
            ++  + I+  +   + +   E+++ +   + + T          +     +  L   LN
Sbjct: 659 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLN 716

Query: 422 CPDPRIVTVCLEGLENILKAGEAE 445
                +       +  I      E
Sbjct: 717 PEFISVCNNATWAIGEISIQMGIE 740

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 31/186 (16%), Positives = 66/186 (35%), Gaps = 17/186 (9%)

Query: 84  DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143
           D++  + A      L           V +S ++    + +  D  P+++  +   L ++ 
Sbjct: 635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ-DKMPEVRQSSFALLGDLT 693

Query: 144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA---GD--SPKCRDLVLSN 198
               ++ +  I    +PI    L+     V   A WA+G ++   G    P    ++   
Sbjct: 694 KACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL--- 749

Query: 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ---PLFEQTRPALPALERLIHSNDD 255
             L+ ++     +   ++L N   T+       PQ   P+ +Q          L +  D+
Sbjct: 750 HQLVEIIN--RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW--CTSLRNIRDN 805

Query: 256 EVLTDA 261
           E    A
Sbjct: 806 EEKDSA 811

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 28/217 (12%), Positives = 62/217 (28%), Gaps = 14/217 (6%)

Query: 53  LQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
           +     +     +       LPA+V         ++L        L         +E + 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
                        D    ++  A   L  +     +          +P  + +   P   
Sbjct: 444 -----SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYL 495

Query: 173 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232
            R   ++ +  ++    +  D+   +  ++P + +       ++  N   +L        
Sbjct: 496 HRMTTLFCINVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551

Query: 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269
               +      P LE+L    D +V   A  AL+ LS
Sbjct: 552 NSTLQSE--VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 24/194 (12%), Positives = 59/194 (30%), Gaps = 12/194 (6%)

Query: 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 176
              I  L+ D   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
           A   L  +     K      ++  ++P +   +            + ++       Q + 
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
            +    LP + R+       V  +   +L  +    ++     +++ V P L +L +   
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 297 PSVLIPALRTVGNI 310
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 16/139 (11%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 47  KKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP 106
           + R   ++    L     ++    +     +A +      I+  AT+  +KL+       
Sbjct: 417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW 476

Query: 107 INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 166
            +  I    +P+ +      ++        + +  ++    ++   +     +P  +R+ 
Sbjct: 477 AHATI----IPKVLAMSGDPNYLHRM-TTLFCINVLSEVCGQD---ITTKHMLPTVLRMA 528

Query: 167 SSPTDDVREQAVWALGNVA 185
             P  +VR     +L  + 
Sbjct: 529 GDPVANVRFNVAKSLQKIG 547

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 29/286 (10%), Positives = 80/286 (27%), Gaps = 43/286 (15%)

Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 218
             +    + SP  ++R  +   L  ++ D+                     +       R
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGR 58

Query: 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278
                                  A   L+  + S D              +     ++  
Sbjct: 59  IL---------------------AALTLKNELVSKDSVK-------TQQFAQRWITQVSP 90

Query: 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 338
             +  +    +  L    P +   A + +  I   +          + +  ++D      
Sbjct: 91  EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQ 147

Query: 339 KKSIKKEACWTISNITAGNVNQIQAIIEA--GIIGPLVNLLLNAEF--EIKKEAAWAISN 394
            +++K+ +   +  +      Q QA++ +   I+  +V    + E    ++  A  A+++
Sbjct: 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALAD 207

Query: 395 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 440
           +     N   +       ++ +C+     D  +       L  I+ 
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 24/254 (9%), Positives = 57/254 (22%), Gaps = 37/254 (14%)

Query: 125 RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184
            D     +  +A  L                  AV + +   S      R+   + LG +
Sbjct: 29  DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI 77

Query: 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244
                   +          L           +   A  + +  C+  P      +   + 
Sbjct: 78  KICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVE 127

Query: 245 ALERLIHSNDDEVLTDACWALSYLSDGT-----------NDKIQAVIEAGVCPRLVELLR 293
             +         V     +A+S ++D              +       A           
Sbjct: 128 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 187

Query: 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
                 +         +     +      + + L  L D L +N   ++  +       +
Sbjct: 188 DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN---TVYDDIIEAAGEL 244

Query: 354 TAGNVNQIQAIIEA 367
             G+   +  +   
Sbjct: 245 --GDKTLLPVLDTM 256

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 27/285 (9%), Positives = 61/285 (21%), Gaps = 46/285 (16%)

Query: 163 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222
            RLL       R  +   L    G               + L  +F             +
Sbjct: 25  FRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKNYIRRDIGAF 72

Query: 223 TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 282
            L      K     +        L  +  ++    +          S     K   +   
Sbjct: 73  ILGQIKICK-----KCEDNVFNILNNMALNDKSACVRATAI----ESTAQRCKKNPIYSP 123

Query: 283 GVCPRLVELLRHPSPSVLIPALRTVG----------NIVTGDDMQTQCIINHQALPCLLD 332
            +  +        S +V       +            I    D              +  
Sbjct: 124 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 183

Query: 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392
               + +    +        +    +  +    +  ++  L + L      +  +   A 
Sbjct: 184 YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAA 241

Query: 393 SNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLE 436
                         L  +  +  L  +L    D  I+T  ++ L+
Sbjct: 242 GE------------LGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	529
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.76
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.7
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.68
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.56
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.52
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.45
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.44
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.38
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.19
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.12
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.12
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.12
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.01
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.65
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.62
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.45
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.29
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.53
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.33
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.96
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.88
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.67
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.45
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.24
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.24
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.82
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.08
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	88.26
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	85.43
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	84.17
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	83.9
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	83.63

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-61  Score=495.53  Aligned_cols=488  Identities=55%  Similarity=0.833  Sum_probs=425.5

Q ss_pred             ccHHHhhhccC-C-CCchHHHhhhHHHHHHHHHHhhHHHHHhhhhhcccCCC--Cc-------cchhhhhhhhhccHHHH
Q 009665            8 RTEVRRSKYKV-A-VDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQ--PL-------TNSAALDNKKLESLPAM   76 (529)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~e~r~~r~~~~~~lRk~~r~~~l~~~r~~~~~~~~--~~-------~~~~~~~~~~~~~l~~l   76 (529)
                      .+++|++.||+ | .+++|+||||+++.+||||+||++.|+|||+.....+.  .+       ...........+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            57899999999 5 59999999999999999999999999999965332211  00       11111222334679999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009665           77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH  156 (529)
Q Consensus        77 ~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  156 (529)
                      +..+.+++...+..|+..++++++.+..++++.+++.|++|.|+.+++.+.++.++..|+|+|++++.+++.....+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999999888788899999999999999999876558899999999999999889999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC-CCCc
Q 009665          157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL  235 (529)
Q Consensus       157 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  235 (529)
                      |+++.++.+|.+++.++++.|+|+|+||+.+++.++..+...|++++++.++ .+.+..+.+.++|++++++... +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6667789999999999999876 5556


Q ss_pred             hhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 009665          236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  315 (529)
Q Consensus       236 ~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~  315 (529)
                      .....+++|.++.++.+.|++++..++|+|.+++....+....+++.|+++.++.++.++++.++..++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999888888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHH
Q 009665          316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  395 (529)
Q Consensus       316 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  395 (529)
                      .....+++.|+++.+..++.++ ++.+++.++|+|+|++.+++.....+++.|+++.++.++.+++++++.+|+|+|+|+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            8998899999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCC--CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHH
Q 009665          396 TSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL  473 (529)
Q Consensus       396 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L  473 (529)
                      +..+  .++...++++.|+++.|+++|+..|++++..++.+|.+++..++....... ...+++...|++.||+++|+.|
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~-~~~~~~~~~iee~g~~~~i~~L  478 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG-LNINENADFIEKAGGMEKIFNC  478 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCHHHHHHHHTTHHHHHHGG
T ss_pred             HhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHCCCHHHHHHH
Confidence            9754  356788999999999999999999999999999999999988765443211 2357899999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhhCCCCCC
Q 009665          474 QSHDNTEIYEKAVKILETYWVEEDE  498 (529)
Q Consensus       474 ~~~~~~~v~~~a~~il~~~~~~~~~  498 (529)
                      ++|++++||++|..||++||++|+|
T Consensus       479 q~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         479 QQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             GGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            9999999999999999999987654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-47  Score=380.61  Aligned_cols=417  Identities=49%  Similarity=0.830  Sum_probs=384.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhH
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      +.++.+++.|.+++++.+..|+.+++++++...+++++.+++.|++|.|+++|++.++++++..|+++|.+++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            57999999999999999999999999999877677788899999999999999876558899999999999999888999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccch----hHHHHHHHHHHHhh
Q 009665          151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSN  226 (529)
Q Consensus       151 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~  226 (529)
                      ..+++.|+++.|+.+|.+++.++++.|+|+|+|++.+++..+..+.+.|++..++.++....    .....+.++|++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999985332    23567889999999


Q ss_pred             hhcCC-CCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHH
Q 009665          227 FCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  305 (529)
Q Consensus       227 l~~~~-~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~  305 (529)
                      ++... +........+++|.+..++.+++++++..++|++++++..+......+...|+++.++.++.++++.++..++.
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99887 44555567889999999999999999999999999999888777787888899999999999999999999999


Q ss_pred             HHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHH
Q 009665          306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  385 (529)
Q Consensus       306 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~  385 (529)
                      +|++++.+++.....+++.|+++.+..++.++ +++++..|+|+|++++.++++....+.+.|+++.++.++.+++++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999999988888899999999999999998 99999999999999999888888889999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhc
Q 009665          386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE  465 (529)
Q Consensus       386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g  465 (529)
                      ..|+|+|+|++..++++....+.+.|+++.|+++++..+++++..++++|.+++..++...      ..+++...+++.|
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~------~~~~~~~~~~~~~  405 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECG  405 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC------CcHHHHHHHHHcC
Confidence            9999999999998888999999999999999999999999999999999999998876542      3567899999999


Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          466 GLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       466 ~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      |++.|+.|++|+|+++++.|.++|++||.
T Consensus       406 ~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         406 GLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             SHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-32  Score=280.24  Aligned_cols=368  Identities=26%  Similarity=0.360  Sum_probs=322.4

Q ss_pred             hccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           70 LESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        70 ~~~l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      -|.+|.++..+++ .++.++..|+++|.++.+.. ......+++.|+++.++.+|.+++ ++++..|+|+|+||+..+++
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~  195 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD  195 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHH
Confidence            4689999999984 56889999999999988654 445667889999999999999988 99999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      .+..+.+.|+++.|+.++.+.+..++..++|+|.+++.............++++.++.++ .+.+.++...++|++.+++
T Consensus       196 ~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~  274 (503)
T d1wa5b_         196 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS  274 (503)
T ss_dssp             HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999976544445555667899999998 7778899999999999999


Q ss_pred             cCCCCC-chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHH
Q 009665          229 RGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  307 (529)
Q Consensus       229 ~~~~~~-~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L  307 (529)
                      ...+.. ......++++.++.++.++++.++..++.++++++.+.+.....+++.|+++.+..++.++++.++..++++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l  354 (503)
T d1wa5b_         275 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI  354 (503)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             cCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence            875322 3344578999999999999999999999999999998888888889999999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHhcCChhH
Q 009665          308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFEI  384 (529)
Q Consensus       308 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~l~~L~~~l~~~~~~v  384 (529)
                      +|++.+++.....+++.++++.++.++.++ +.+++.+|+|+|+|++.+   .++.+..+++.|+++.|+++|...+.++
T Consensus       355 ~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~  433 (503)
T d1wa5b_         355 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI  433 (503)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred             HHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHH
Confidence            999999998888999999999999999998 899999999999999962   4567888999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC----------CHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 009665          385 KKEAAWAISNATSGG----------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~----------~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~  441 (529)
                      ...++.+|.++...+          .......+.+.|+++.|..+..+++.++...+...|..++..
T Consensus       434 ~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~  500 (503)
T d1wa5b_         434 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  500 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            999999999987432          123445677889999998888899999999998888776643

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-32  Score=269.17  Aligned_cols=366  Identities=26%  Similarity=0.407  Sum_probs=317.8

Q ss_pred             hccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           70 LESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        70 ~~~l~~l~~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      .|.+|.|++.|++ +++.+|..|+++|.++++.. ......+++.|++|.|+.+|.+++ ++++..|+++|++++..+++
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchH
Confidence            4789999999974 56789999999999998653 455677889999999999999988 99999999999999998888


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHH
Q 009665          149 NTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT  223 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  223 (529)
                      .+..+.+.|+++.|+.++...+     ......++|++.+++.............++++.++.++ .+.+++++..++|+
T Consensus       133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~  211 (434)
T d1q1sc_         133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  211 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhh
Confidence            8999999999999999997743     35667789999999977655445555566788888888 67788999999999


Q ss_pred             HhhhhcCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHH
Q 009665          224 LSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP  302 (529)
Q Consensus       224 L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~  302 (529)
                      +.+++...+. .......++++.++.++.++++.++..++++|.+++...+.....+++.|+++.++.++.++++.++..
T Consensus       212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~  291 (434)
T d1q1sc_         212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  291 (434)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHH
Confidence            9999987532 223345789999999999999999999999999999888777788899999999999999999999999


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCC
Q 009665          303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAE  381 (529)
Q Consensus       303 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~  381 (529)
                      |+++|++++.........+.+.|+++.++.++.++ +++++..|+|+|+|++. ++++.+..+++.|+++.|++++..++
T Consensus       292 a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         292 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  370 (434)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSC
T ss_pred             HHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCC
Confidence            99999999998888888889999999999999998 89999999999999997 46788888999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcC-----CCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          382 FEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       382 ~~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      ++++..++++|.++...     ..+.....+.+.|+++.|..+..+++++++..+...|.+++
T Consensus       371 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         371 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            99999999999999742     22345566778899999999999999999999999887654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-31  Score=268.48  Aligned_cols=402  Identities=20%  Similarity=0.216  Sum_probs=343.1

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        69 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      +.+.+|.++..|+++++.++..|+.+|.+++... ......+.+.|++|.|+.+|++++ ++++..++++|.+++..+++
T Consensus        99 ~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~  176 (529)
T d1jdha_          99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQE  176 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             HCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhH
Confidence            3478999999999999999999999999987653 445566779999999999999988 99999999999999998888


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665          149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  227 (529)
                      .+..+...|+++.|+.++.. +...++..+++++.+++.+. ..+..+.+.|+++.++.++ .+.+..+...+++++.++
T Consensus       177 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~l  254 (529)
T d1jdha_         177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhc
Confidence            89999999999999999965 56789999999999998754 5688899999999999999 677888999999999999


Q ss_pred             hcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC--CCCcchHHHHHH
Q 009665          228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALR  305 (529)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~al~  305 (529)
                      +....  ......++++.|++++.++++.++..++++|++++..+......+.+.++++.++..+.  ++.+.++..++.
T Consensus       255 s~~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~  332 (529)
T d1jdha_         255 SDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HTTCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHH
Confidence            86542  22234688999999999999999999999999999888777788889999999999884  456678899999


Q ss_pred             HHHHhhcCChh---hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCC-
Q 009665          306 TVGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-  381 (529)
Q Consensus       306 ~L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~-  381 (529)
                      +|++++.....   ....+...++++.++.++.++.+..+...+++++.|++.. ++....+.+.|+++.|++++.+.+ 
T Consensus       333 aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~  411 (529)
T d1jdha_         333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQ  411 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCH
Confidence            99999876542   3444567899999999998875667889999999999886 566677889999999999997543 


Q ss_pred             ---------------------hhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 009665          382 ---------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  440 (529)
Q Consensus       382 ---------------------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~  440 (529)
                                           .++...++.++..++.  .+.....+.+.|+++.|+++|.++++.++..++++|.++..
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  489 (529)
T d1jdha_         412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             HHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence                                 2456677778888876  45677777889999999999999999999999999999864


Q ss_pred             hhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665          441 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  492 (529)
                      ..+             ..+.+.+.|+++.|.+|.+++|++++..|..+|.++
T Consensus       490 ~~~-------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         490 DKE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             SHH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             Chh-------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            432             367888999999999999999999999999988754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.1e-30  Score=263.58  Aligned_cols=403  Identities=16%  Similarity=0.160  Sum_probs=339.0

Q ss_pred             ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhh
Q 009665           71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  149 (529)
Q Consensus        71 ~~l~~l~~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  149 (529)
                      +.++.++..|. +++++++..|+.+|..+..  +.+....+++.|++|.|+.+|++++ ++++..|+++|.+++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--CchhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            46889999997 5678999999999999853  2466778889999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhc
Q 009665          150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  229 (529)
Q Consensus       150 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  229 (529)
                      +..+.+.|+++.|+.+|.+++.+++..++++|.+++..++..+..+...|+++.++.++.......++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            88899999999999999999999999999999999988888889999999999999999766677899999999999988


Q ss_pred             CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHH
Q 009665          230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  309 (529)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~  309 (529)
                      ...........++++.|+.++.+++..++..+++++.+++......   ....|+++.|+.++.+++..++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            7555555566789999999999999999999999999998654422   2234789999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCH--H-HHHHHHHcCCHHHHHHHHhcC-ChhH
Q 009665          310 IVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNV--N-QIQAIIEAGIIGPLVNLLLNA-EFEI  384 (529)
Q Consensus       310 l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~--~-~~~~l~~~~~l~~L~~~l~~~-~~~v  384 (529)
                      ++.+++.....+.+.++++.++..+.. ...+.++..++++|.+++...+  + ....+...+.++.++.++..+ +..+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~  372 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence            999888888888899999999998843 2257789999999999997532  2 334455789999999999876 4578


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 009665          385 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG  442 (529)
Q Consensus       385 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~----------------------~~v~~~~l~aL~~l~~~~  442 (529)
                      +..+++++.+++..  ++....+.+.|+++.|+++|...+                      .+++..+..++..+....
T Consensus       373 ~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~  450 (529)
T d1jdha_         373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCH
Confidence            88999999999875  356677889999999999986433                      245566666666554332


Q ss_pred             hhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          443 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      .             -...+.+.|+++.|..+..+++++++..|...|..+..
T Consensus       451 ~-------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  489 (529)
T d1jdha_         451 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             H-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             H-------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            1             25667789999999999999999999999999988754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7e-26  Score=225.78  Aligned_cols=367  Identities=17%  Similarity=0.188  Sum_probs=279.6

Q ss_pred             CChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009665          114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  193 (529)
Q Consensus       114 g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  193 (529)
                      +.||.|+++|++++ ++++..|+++|.+++.++++.+..+.+.|+||.|+++|++++++++..|+++|++++.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998999999999999999999999999999999999999999988888999


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhh----------------ccCChHH
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----------------HSNDDEV  257 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll----------------~~~d~~v  257 (529)
                      .+.+.|+++.++.++....++.++..+++++.+++........ .....++.++..+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE-LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH-HHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHH-HHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            9999999999999997777889999999999999987543333 3334444443332                2457889


Q ss_pred             HHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC------CcchHHHHHHHHHHhhc-------------------
Q 009665          258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP------SPSVLIPALRTVGNIVT-------------------  312 (529)
Q Consensus       258 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~------~~~v~~~al~~L~~l~~-------------------  312 (529)
                      +..+++++.+++.........+...|+++.++.++.+.      .......+...+.+...                   
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999987666555555668889888887531      11122222222211110                   


Q ss_pred             -------------------------------CChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH--
Q 009665          313 -------------------------------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--  359 (529)
Q Consensus       313 -------------------------------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  359 (529)
                                                     ........+...++++.+..++....++.++..+++++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                           00111111223345677777776654778899999999999874322  


Q ss_pred             ---HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHH
Q 009665          360 ---QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTV  430 (529)
Q Consensus       360 ---~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~  430 (529)
                         ....+.+.++++.|+.++.+++++++..+++++++++...  +....+. .++++.|+.+|..      .+.+++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               1233446789999999999999999999999999999753  4444443 4678999998863      23568899


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhc-CCCHHHHHHHHHHHHhhCCCCC
Q 009665          431 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYWVEED  497 (529)
Q Consensus       431 ~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~-~~~~~v~~~a~~il~~~~~~~~  497 (529)
                      ++.+|.++......            ....+.+.||++.|..+.. ++++.+++.|..+|.++|...+
T Consensus       397 a~~~L~~l~~~~~~------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHhcCCHH------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            99999999854432            3667778999999999965 5678999999999999987543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-23  Score=209.74  Aligned_cols=362  Identities=15%  Similarity=0.182  Sum_probs=269.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+|.+++.|+++++++|..|+.+|.+++.. ++.....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            689999999999999999999999998754 3677888999999999999999988 99999999999999988899999


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---------------cchhHH
Q 009665          152 VVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---------------EHAKLS  215 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~---------------~~~~~~  215 (529)
                      .+.+.|+++.|+.++.+ .+.+++..++++|++++..... +...... +++.++..+.               ...+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999998876 7789999999999999976653 3333333 3344444331               234678


Q ss_pred             HHHHHHHHHhhhhcCCCCCch-hhhhchHHHHHHhhccC------ChHHHHHHHHHHHHhcc------------------
Q 009665          216 MLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSN------DDEVLTDACWALSYLSD------------------  270 (529)
Q Consensus       216 ~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~ll~~~------d~~v~~~a~~~L~~l~~------------------  270 (529)
                      ++..+++++.+++........ ....++++.++.++.+.      .......+...+.....                  
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            899999999999877532222 22356788888777532      11112222222211110                  


Q ss_pred             --------------------------------CCchhHHHHHHhCcHHHHHHhcCC-CCcchHHHHHHHHHHhhcCChh-
Q 009665          271 --------------------------------GTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM-  316 (529)
Q Consensus       271 --------------------------------~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~-  316 (529)
                                                      ........+...++++.++.++.. .++.+...+.+++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                            000011112233566777777644 4567788889999998875442 


Q ss_pred             ----hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC------ChhHHH
Q 009665          317 ----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EFEIKK  386 (529)
Q Consensus       317 ----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~------~~~v~~  386 (529)
                          ....+.+.++++.|+.++.++ ++.++..+++++++++.. ++.... +..+.++.++.++...      +.+++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHH-HHHhhHHHHHHHHhccccCcCCcHHHHH
Confidence                233345789999999999998 999999999999999986 444444 4446899999998653      346999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHh
Q 009665          387 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKA  441 (529)
Q Consensus       387 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~  441 (529)
                      .|+.+|.+++.. +++..+.+.+.|+++.|+.++.+. ++.++..+..+|.+|...
T Consensus       396 ~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            999999999976 457888889999999999998764 578999999999998643

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.4e-19  Score=165.04  Aligned_cols=194  Identities=18%  Similarity=0.185  Sum_probs=174.3

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 009665          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  207 (529)
Q Consensus       129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~  207 (529)
                      .+.+..|+.+|.+++. +.+.+..+...|+++.++. ++.+++++++..|+++|++++.+++.++..+.+.|+++.|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6789999999999997 7788888999999999886 7788999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHHHhhhhcCCCC-CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHH
Q 009665          208 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  286 (529)
Q Consensus       208 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  286 (529)
                      +..+.++.++..++|++++++.+.+. .......++++.|++++.++++.++..++++|.+++...+.....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            97677889999999999999988743 33445688999999999999999999999999999988777888899999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHh
Q 009665          287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  323 (529)
Q Consensus       287 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  323 (529)
                      .|+.+|.++++.++..|+++|++++..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999988777665553

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-18  Score=159.05  Aligned_cols=230  Identities=17%  Similarity=0.178  Sum_probs=188.2

Q ss_pred             cCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH-hcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHH
Q 009665          252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL  330 (529)
Q Consensus       252 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L  330 (529)
                      ..+.+.+..++.+|.+++... +....+...|+++.++. ++.++++.++..|+++|++++.+++.....+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~-d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            346788999999999999654 45567888899998875 6788999999999999999999888888888899999999


Q ss_pred             HHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 009665          331 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ  410 (529)
Q Consensus       331 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  410 (529)
                      +.++.+..++.++..++|+|++++.+++.....+...|+++.|+.++.+++..++..++++|.+++.. +++....+...
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99997654789999999999999999899888999999999999999999999999999999999876 45777888899


Q ss_pred             CChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHH-hhchHHHHHH---H-h-cCCCHHHHHH
Q 009665          411 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID-DAEGLEKIEN---L-Q-SHDNTEIYEK  484 (529)
Q Consensus       411 ~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~-~~g~~~~l~~---L-~-~~~~~~v~~~  484 (529)
                      |+++.|+.++++++++++..++++|.++....+...           ..... +.+....+..   + . .....+..+.
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-----------~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~  254 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV-----------RECREPELGLEELLRHRCQLLQQHEEYQEELEF  254 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH-----------HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHhhhhHHHHHHHHHHhccchHHHHHHHHH
Confidence            999999999999999999999999999986543321           11111 1122222222   2 1 2334556688


Q ss_pred             HHHHHHhhCC
Q 009665          485 AVKILETYWV  494 (529)
Q Consensus       485 a~~il~~~~~  494 (529)
                      +..|++.+|.
T Consensus       255 ~~~ll~~~~~  264 (264)
T d1xqra1         255 CEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            8899998884

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.3e-17  Score=165.86  Aligned_cols=341  Identities=12%  Similarity=0.130  Sum_probs=241.0

Q ss_pred             ChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHH
Q 009665          115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRD  193 (529)
Q Consensus       115 ~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~  193 (529)
                      ++|.+..++.+.+ +.+|..++.+|+.++....   .......+++.+..++.+++.+++..++.+++.++..- .....
T Consensus       243 i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~  318 (588)
T d1b3ua_         243 VMPTLRQAAEDKS-WRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHhccccc-HHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4566666666665 6677777777777654111   11222346788888888888888888888888877332 22222


Q ss_pred             HHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCc
Q 009665          194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  273 (529)
Q Consensus       194 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~  273 (529)
                      ...-..+++.+...+ .+.+..++..++.++..++..-  ........++|.+..++.+++++++..++.++..+.....
T Consensus       319 ~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~--~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~  395 (588)
T d1b3ua_         319 NVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL--GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH--CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc--chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc
Confidence            222234556666666 6677888888888887776432  1223446688999999999999999999988887764322


Q ss_pred             hhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHH
Q 009665          274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  353 (529)
Q Consensus       274 ~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  353 (529)
                      .  ..+ ...+++.+..++.+.++.++..++.+++.++.....   ..+...+.+.+..++.++ ...+|..|+++++.+
T Consensus       396 ~--~~~-~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l  468 (588)
T d1b3ua_         396 I--RQL-SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKL  468 (588)
T ss_dssp             H--HHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred             h--hhh-hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHH
Confidence            1  112 235778889999999999999999999988753111   112234567788888888 889999999999999


Q ss_pred             hcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHH
Q 009665          354 TAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL  432 (529)
Q Consensus       354 ~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l  432 (529)
                      +.. .++.    ....+++.+..++.++++.+|..++.++..+....+.+.    ....+++.|..+++++.+.|+..++
T Consensus       469 ~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~----~~~~ilp~ll~~~~D~v~nVR~~a~  540 (588)
T d1b3ua_         469 VEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----TTKHMLPTVLRMAGDPVANVRFNVA  540 (588)
T ss_dssp             HHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH----HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            862 2221    223488999999999999999999999999876432222    3345899999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665          433 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       433 ~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  492 (529)
                      ++|..+.......          .+.     ....+.++.|+++++.+|+..|...++.+
T Consensus       541 ~~l~~i~~~~~~~----------~~~-----~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         541 KSLQKIGPILDNS----------TLQ-----SEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHGGGSCHH----------HHH-----HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCcH----------hHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            9999886544221          011     22467788999999999999999988764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1e-15  Score=157.66  Aligned_cols=381  Identities=11%  Similarity=0.111  Sum_probs=281.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      ++.+.+.+.+.++.+|..++..+..++..-.    ...+...++|.+..++.+++ +.+|..|+.++..++...+..   
T Consensus       166 ~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~---  237 (588)
T d1b3ua_         166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE---  237 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH---
Confidence            5666677788999999999999999886532    12334567888899988888 899999999999988633221   


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009665          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  232 (529)
                      .....++|.+..++.+++..+|..++.+|++++..-.   .......+++.+..++ .+.+..++..++.++..++..-.
T Consensus       238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l~  313 (588)
T d1b3ua_         238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHHh
Confidence            1122367899999999999999999999999874211   1223345677777777 77788999999999999987652


Q ss_pred             CC--chhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          233 QP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       233 ~~--~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                      ..  .......++|.+...+.+.++.++..++.++..++..-..  . .....+++.+..++.++++.++..++.+++.+
T Consensus       314 ~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~  390 (588)
T d1b3ua_         314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCV  390 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred             hhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            22  2234578889999999999999999999888877643211  1 11225788899999999999999998888877


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHH
Q 009665          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  389 (529)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~  389 (529)
                      .....  ...+ ...+++.+..++.+. ++.+|..++.++..++.. ..+.    +...+.+.+..++.++...+|..|+
T Consensus       391 ~~~~~--~~~~-~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A~  462 (588)
T d1b3ua_         391 NEVIG--IRQL-SQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAAT  462 (588)
T ss_dssp             HHHSC--HHHH-HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred             Hhhcc--hhhh-hhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHHH
Confidence            65321  1111 235678888999888 999999999999988752 1111    1122466777788888999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHH
Q 009665          390 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  469 (529)
Q Consensus       390 ~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~  469 (529)
                      ++|+.++...+++.    ....+++.+..++.+++...+..++.++..+.......              .+ ....++.
T Consensus       463 ~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~--------------~~-~~~ilp~  523 (588)
T d1b3ua_         463 SNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--------------IT-TKHMLPT  523 (588)
T ss_dssp             HHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--------------HH-HHHTHHH
T ss_pred             HHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH--------------HH-HHHHHHH
Confidence            99999987544433    22347889999999999999999999999887654321              12 2335778


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhhCCC
Q 009665          470 IENLQSHDNTEIYEKAVKILETYWVE  495 (529)
Q Consensus       470 l~~L~~~~~~~v~~~a~~il~~~~~~  495 (529)
                      +..+..++.+.|+..+.+.+..++..
T Consensus       524 ll~~~~D~v~nVR~~a~~~l~~i~~~  549 (588)
T d1b3ua_         524 VLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            88889999999999998888877653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.4e-13  Score=145.41  Aligned_cols=360  Identities=12%  Similarity=0.141  Sum_probs=225.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHH
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  152 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  152 (529)
                      ++.+.+.+.++++..|..|+.++..++.+. .......+ ..++|.|+..+.+++ +.+|..|+|+|+.++.........
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            355556777899999999999999887542 11111111 236788999999888 999999999999988522111111


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      -.-..+++.++..+.++++.+++.|+++|.+++.... .....+  ..+++.++..+ ...+......+..++..++...
T Consensus       474 ~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~~  550 (888)
T d1qbkb_         474 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAF-SKYQHKNLLILYDAIGTLADSV  550 (888)
T ss_dssp             HHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhh
Confidence            1234678889999988999999999999999973211 111111  12345566666 3333344445555555554321


Q ss_pred             --CCCchhhhhchHHHHHHhhcc--CChHHHHHHHHHHHHhccCCch----hHHHHHHhCcHHHHHH--------hc---
Q 009665          232 --PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTND----KIQAVIEAGVCPRLVE--------LL---  292 (529)
Q Consensus       232 --~~~~~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~L~~--------lL---  292 (529)
                        ..........+++.+......  .+......++.+++.++.....    ....+.. .++..+..        ..   
T Consensus       551 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         551 GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             GGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTT
T ss_pred             hccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccc
Confidence              111223344566666655542  2233344455666655432211    1111111 11111111        11   


Q ss_pred             --CCCCcchHHHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009665          293 --RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  369 (529)
Q Consensus       293 --~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  369 (529)
                        ...+..+...++.+++.++.+-......++ ...+++.+...+.+. ++.+|..|..+++.++...+......++. +
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~~-~  707 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIAD-F  707 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHHH-H
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHHH-H
Confidence              123455677778888888764443333333 456788888999888 89999999999999987544444333332 7


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCC--HHHHHHHHHHHHHHHHhhh
Q 009665          370 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       370 l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~--~~v~~~~l~aL~~l~~~~~  443 (529)
                      ++.++..+.++.+.++..|+|+++.++.....+...++-  .+++.|+..++.++  ..++..++.+|+.+....+
T Consensus       708 ~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p  781 (888)
T d1qbkb_         708 MPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP  781 (888)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCH
Confidence            778888888888899999999999998765544444432  36788888887654  4588999999999876554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.9e-12  Score=140.08  Aligned_cols=408  Identities=12%  Similarity=0.112  Sum_probs=265.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      .+..+++.+.+.|+++|+.|+..|.+.+..... ..+.-....+++.|+++|.+.+ ++||..|+.||+.++...++...
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~-~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhccc-ccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH
Confidence            356888999999999999999999998865421 1111122347899999999988 99999999999999885544321


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc------hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHh
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  225 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  225 (529)
                          ..+++.|+..+.+++...+..+..+|..+...-+      .....+ ....++.+...+....+..++..++.++.
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~  156 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMA  156 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                1356888888888888888888888877652211      011111 11133444444545567788888888888


Q ss_pred             hhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhc-CCCCcchHHHHH
Q 009665          226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPAL  304 (529)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~al  304 (529)
                      .+....+.........+++.++..+.++++.++..++.+|+.++......   .. ..+++.++..+ .+.+..++..++
T Consensus       157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~  232 (1207)
T d1u6gc_         157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  232 (1207)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHH
Confidence            88776544444445678888999999999999999999999998664321   11 14556666555 455667788889


Q ss_pred             HHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH----HHHHHHHc-------------
Q 009665          305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN----QIQAIIEA-------------  367 (529)
Q Consensus       305 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~----~~~~l~~~-------------  367 (529)
                      .+++.++...+......+ ..+++.+...+.+. +.++|..++.++..++...+.    ....++..             
T Consensus       233 ~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~  310 (1207)
T d1u6gc_         233 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNY  310 (1207)
T ss_dssp             HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhh
Confidence            999998875543322211 36788899999888 889999999999888763222    11111110             


Q ss_pred             -------------------CCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHH
Q 009665          368 -------------------GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV  428 (529)
Q Consensus       368 -------------------~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~  428 (529)
                                         ...+.......+..+.+|..|+.+|..++.... +....+ -..+++.|...+.+.++.++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~-~~~~~~~L~~~l~d~~~~vr  388 (1207)
T d1u6gc_         311 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVK  388 (1207)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHH
T ss_pred             hhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHH-HHHHHHHHHHHhcCCchHHH
Confidence                               001111111223356899999999999987643 333332 24588999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCC-C---CccchHHHHHHh--hchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          429 TVCLEGLENILKAGEAEKNMGN-T---GGVNLFAQAIDD--AEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       429 ~~~l~aL~~l~~~~~~~~~~~~-~---~~~~~~~~~i~~--~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      ..++.++..++........... .   ...+.....+..  ...++.+.....+.++.++..+..++..+..
T Consensus       389 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         389 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            9999999888754322110000 0   000001111111  1345666777788899999888888877654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-12  Score=136.95  Aligned_cols=345  Identities=14%  Similarity=0.131  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009665           86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  165 (529)
Q Consensus        86 ~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  165 (529)
                      ..+..+..+|..+....+..    ++ .-+++.+.+.+.+++ +..|..|+.+|+.++.+..+.....+ ..+++.|+..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~----il-~~~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDE----LL-PHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSS----SH-HHHHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHH----HH-HHHHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHh
Confidence            35666666665554332211    11 124566667777777 89999999999999986554332222 2457888999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHH
Q 009665          166 LSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  244 (529)
Q Consensus       166 L~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~  244 (529)
                      +.++++.+|..++|+|+.++.... ...+. .-...++.++..+ .+.++.++..++++|.+++.............+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            999999999999999999874211 11111 1234667777777 66778999999999999997654444556678888


Q ss_pred             HHHHhhccCChHHHHHHHHHHHHhccCCchhH--HHHHHhCcHHHHHHhcCC--CCcchHHHHHHHHHHhhcCChhh---
Q 009665          245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKI--QAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQ---  317 (529)
Q Consensus       245 ~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~~L~~lL~~--~~~~v~~~al~~L~~l~~~~~~~---  317 (529)
                      .+...+...+...+..+..+++.++.......  ..+.+ .+++.+......  .+.......+.+++.++......   
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            89888888777777777777776653211110  11121 344555544432  23344556677777765432211   


Q ss_pred             -HHHHHhcCChHHHHHHh--------c----cCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcCChh
Q 009665          318 -TQCIINHQALPCLLDLL--------T----QNYKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFE  383 (529)
Q Consensus       318 -~~~~~~~~~l~~L~~lL--------~----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~  383 (529)
                       ...++. .++..+...+        .    ...+..+...+..+++.++.+.......++ ...+++.+...+.+.+++
T Consensus       602 ~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  680 (888)
T d1qbkb_         602 YCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  680 (888)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence             111111 1111111111        1    111445666677777777653222223333 456788899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Q 009665          384 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  443 (529)
Q Consensus       384 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~  443 (529)
                      ++..|..+++.++.........++-  .+++.|...|+++.+.++..++++++.|.....
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~  738 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQMG  738 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998765444334432  267788888888889999999999999876543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.5e-10  Score=105.74  Aligned_cols=253  Identities=15%  Similarity=0.127  Sum_probs=188.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        72 ~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      ..+.|++.|.++++.++..|+..|..+-.            ...++.|+.++++++ +.++..|+++|+.+....... .
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~~-~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCE-D   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTH-H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccc-c
Confidence            56789999999999999999999988631            135789999999998 999999999999987632221 1


Q ss_pred             HHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcC
Q 009665          152 VVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  230 (529)
Q Consensus       152 ~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  230 (529)
                      ..     ++.+. .+++++++.++..++.+|++++...+.....     .++.+...+ .+.++.++..++.++..... 
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence            11     23333 3567789999999999999998654432222     345566666 66778888888888876543 


Q ss_pred             CCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                               ...++.+..++...+..++..+..++..+.....         ...+.+...+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhcccc---------ccchhhhhhhhhhhhhhhhhhccccchh
Confidence                     2456788888888899999999888887765543         2345567778888888999999998876


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-ChhHHHHHH
Q 009665          311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAA  389 (529)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~  389 (529)
                      ..           ...++.|+..+.++   .+|..++++|+.+..  +         ..++.|..++... +.+++..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig~--~---------~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcCC--H---------HHHHHHHHHHccCCCHHHHHHHH
Confidence            42           24577888888654   589999999998852  2         3778888888774 778999998


Q ss_pred             HHHH
Q 009665          390 WAIS  393 (529)
Q Consensus       390 ~aL~  393 (529)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=5.6e-11  Score=108.76  Aligned_cols=256  Identities=15%  Similarity=0.162  Sum_probs=194.1

Q ss_pred             cCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009665          113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  192 (529)
Q Consensus       113 ~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  192 (529)
                      ....+.|+++|++++ +.+|..|+.+|..+..  +         .+++.|+.++.++++.++..|+++|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            345678999999988 9999999999998764  2         2479999999999999999999999998644332 1


Q ss_pred             HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCC
Q 009665          193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  272 (529)
Q Consensus       193 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~  272 (529)
                      +.     .++.+...+..+.++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            11     244556655577889999999999999886542    1224567788888888899999999888876543  


Q ss_pred             chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665          273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (529)
Q Consensus       273 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  352 (529)
                               ...++.+..++.+.+..++..+..+++.+......         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     24567788888888888888888888887765442         334566777777 88999999999887


Q ss_pred             HhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CCHHHHHHH
Q 009665          353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVC  431 (529)
Q Consensus       353 l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~~~v~~~~  431 (529)
                      +..           ...++.|++.+.+  +.++..++++|+.+..            ...++.|..++.. +|.+++..+
T Consensus       215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHH
Confidence            642           2367888888874  4689999999998842            2367778777765 578899988


Q ss_pred             HHHHH
Q 009665          432 LEGLE  436 (529)
Q Consensus       432 l~aL~  436 (529)
                      +++|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88774

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.5e-10  Score=113.88  Aligned_cols=390  Identities=11%  Similarity=0.094  Sum_probs=247.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhHH-
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR-  151 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~-  151 (529)
                      -.+++.+.++|.+.+.+|-..|..+...+  +       .+++..|...+.+++ ...+|..|+-.|.+.......... 
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~   73 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVEN--L-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   73 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhh
Confidence            45677778999999999999999987431  0       135667778776543 267888888888887764322111 


Q ss_pred             HH----------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-chhHHHHHHH
Q 009665          152 VV----------IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNA  220 (529)
Q Consensus       152 ~~----------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a  220 (529)
                      ..          ....+.+.++..+.+++.. +..++.+++.++.....   .-.-.+.++.++..+.. ..+...+..+
T Consensus        74 ~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          74 QYQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCC---cccCcchhHHHHHHHHhhcchHHHHHHH
Confidence            11          1123445667777665443 33445555555421100   00012356667776643 2355677788


Q ss_pred             HHHHhhhhcCC-CCCchhhhhchHHHHHHhhccC--ChHHHHHHHHHHHHhccCCchhHH-HHHHhCcHHHHHHhcCCCC
Q 009665          221 TWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPS  296 (529)
Q Consensus       221 ~~~L~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~  296 (529)
                      +.++..++... +.........+++.++..+.+.  +..++..++.++..+......... ......+.+.+..++.+++
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            88888887654 2333344567788888888754  567999999999998865432211 1222346677888888899


Q ss_pred             cchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH--------------
Q 009665          297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ--------------  362 (529)
Q Consensus       297 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~--------------  362 (529)
                      +.++..++.+++.++..........+.....+.+...+.+. +..++..|+..+..++........              
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  308 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  308 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence            99999999999999876554433223333344455556666 888999999998888642111110              


Q ss_pred             ------HHHHcCCHHHHHHHHhc-------CChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHH
Q 009665          363 ------AIIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT  429 (529)
Q Consensus       363 ------~l~~~~~l~~L~~~l~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~  429 (529)
                            ...-..+++.+...+..       .+..++..|..++..++.....+....     +++.+.+.+.++++.++.
T Consensus       309 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~  383 (458)
T d1ibrb_         309 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRD  383 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHH
Confidence                  00111234555555432       234588889999998886544343333     467788889999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          430 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       430 ~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      .++.+|..+........          +...+  ...++.|..+..++++.|+..|.+.|.++.+
T Consensus       384 aal~~l~~i~~~~~~~~----------~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         384 AAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHhH----------HHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999988764321110          01111  2346677888899999999999999988754

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.4e-11  Score=115.30  Aligned_cols=361  Identities=14%  Similarity=0.096  Sum_probs=225.5

Q ss_pred             cHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCChhh-H----------HhhcCChHHHHHhhcCCCChHHHHHHHHH
Q 009665           72 SLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPIN-E----------VIQSGVVPRFIEFLSRDDFPQLQFEAAWA  138 (529)
Q Consensus        72 ~l~~l~~~L~s--~~~~~~~~a~~~l~~lls~~~~~~~~-~----------~i~~g~i~~Li~lL~~~~~~~v~~~a~~~  138 (529)
                      .+..+...+.+  .+..+|..|+..|++.+... .+... .          -....+.+.+++.+.+++ +. +..++.+
T Consensus        35 ~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~-~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~  111 (458)
T d1ibrb_          35 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQC  111 (458)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-CchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHH
Confidence            34556665643  35778899999999888653 11111 1          112234556777777765 43 3345556


Q ss_pred             HHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-chhHH
Q 009665          139 LTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLS  215 (529)
Q Consensus       139 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~  215 (529)
                      +..++......   -.-.+.++.++..+.+  .+..++..++.+++.++.........-....+++.++..+.. +.+..
T Consensus       112 ~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~  188 (458)
T d1ibrb_         112 VAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  188 (458)
T ss_dssp             HHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHH
Confidence            65555411000   0013567888888765  567788899999988874332111111111245666666643 24677


Q ss_pred             HHHHHHHHHhhhhcCCCC--CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcC
Q 009665          216 MLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  293 (529)
Q Consensus       216 ~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~  293 (529)
                      ++..++.++..+......  ..........+.+...+.+++++++..++.++..++..........+.......+...+.
T Consensus       189 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~  268 (458)
T d1ibrb_         189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  268 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999988765411  122233456677788888899999999999999998655433322223334455566667


Q ss_pred             CCCcchHHHHHHHHHHhhcCChhhHHH--------------------HHhcCChHHHHHHhccC------CchhHHHHHH
Q 009665          294 HPSPSVLIPALRTVGNIVTGDDMQTQC--------------------IINHQALPCLLDLLTQN------YKKSIKKEAC  347 (529)
Q Consensus       294 ~~~~~v~~~al~~L~~l~~~~~~~~~~--------------------~~~~~~l~~L~~lL~~~------~~~~v~~~a~  347 (529)
                      +.++.++..++..+..++.........                    .....+.+.+...+...      .+..++..+.
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            788888999999888886422111100                    00112334444444321      1346888899


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHH
Q 009665          348 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI  427 (529)
Q Consensus       348 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v  427 (529)
                      .++..++...++..   ++ .+++.+...+.++++.+|..|+.+|+.++.+...+..... -..+++.|+.++.++++.|
T Consensus       349 ~~l~~l~~~~~~~~---~~-~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~V  423 (458)
T d1ibrb_         349 VCLMLLATCCEDDI---VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVV  423 (458)
T ss_dssp             HHHHHHHHHTTTTH---HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHhccHhh---hh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHH
Confidence            99888876322211   11 2567777888889999999999999999875433322211 1346889999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 009665          428 VTVCLEGLENILKAGE  443 (529)
Q Consensus       428 ~~~~l~aL~~l~~~~~  443 (529)
                      +..++++|+.+.....
T Consensus       424 R~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         424 RDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987643

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=1.1e-09  Score=116.56  Aligned_cols=396  Identities=12%  Similarity=0.156  Sum_probs=232.0

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 009665           75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  154 (529)
Q Consensus        75 ~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  154 (529)
                      .+...+.+.+...+..++..+..+............ -..+++.++..+.+++ +.++..++|+++.++...+.   .+.
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~-l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~~~  447 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY-VHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAE---SID  447 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGG---GSC
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhch---hhh
Confidence            333455688889999999999888754321112222 2347889999999988 99999999999998862211   111


Q ss_pred             hCCChHHHHHhhC---CCCHHHHHHHHHHHHHhhCC----Cc-hhHHHHHhcCChHHHHHHhc-cchhHHHHHHHHHHHh
Q 009665          155 DHGAVPIFVRLLS---SPTDDVREQAVWALGNVAGD----SP-KCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLS  225 (529)
Q Consensus       155 ~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~~----~~-~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~  225 (529)
                      ....++.++..+.   ..++.++..+++++..++..    .. .......  ..+..++.... ...+..++..+..++.
T Consensus       448 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~  525 (861)
T d2bpta1         448 PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            2233333333321   24678888888888877521    11 1111111  12334444432 2345677888888888


Q ss_pred             hhhcCCCCCchhhhhchHHHHHHhhc----cCC-----------hHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHH
Q 009665          226 NFCRGKPQPLFEQTRPALPALERLIH----SND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  290 (529)
Q Consensus       226 ~l~~~~~~~~~~~~~~~l~~L~~ll~----~~d-----------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~  290 (529)
                      .+....+.........+.+.+...+.    ...           ..++..++.++..+..........+.+ .+++.++.
T Consensus       526 ~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~  604 (861)
T d2bpta1         526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHhh
Confidence            88776544433344444444433332    111           123444555555554332222221221 45566666


Q ss_pred             hcCC-CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009665          291 LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  369 (529)
Q Consensus       291 lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  369 (529)
                      .+.. .+..++..++.+++.++..........+. .++|.+...+.+. ++.++..|+.+++.++....+......+ .+
T Consensus       605 ~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i  681 (861)
T d2bpta1         605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HH
T ss_pred             hcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HH
Confidence            6654 45668888999999988754444444443 5788899999888 8899999999999998754444333333 27


Q ss_pred             HHHHHHHHhcC--ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCC----C-------HHHHHHHHHHHH
Q 009665          370 IGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP----D-------PRIVTVCLEGLE  436 (529)
Q Consensus       370 l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~----~-------~~v~~~~l~aL~  436 (529)
                      ++.|+..+.+.  +..+|..++.+|+.++........+++-.  +++.+...+...    +       ..++..++.++.
T Consensus       682 ~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  759 (861)
T d2bpta1         682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            88888888765  56899999999999987544444454432  455555555432    2       235677777777


Q ss_pred             HHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh----cCCCHHHHHHHHHHHHhhC
Q 009665          437 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ----SHDNTEIYEKAVKILETYW  493 (529)
Q Consensus       437 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~----~~~~~~v~~~a~~il~~~~  493 (529)
                      .++..-....+     ...+|...+     ++.+..+.    .+.+.++...+..++..+.
T Consensus       760 ~i~~~~~~~~~-----~~~p~~~~i-----~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~  810 (861)
T d2bpta1         760 GIVAGLHDKPE-----ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIA  810 (861)
T ss_dssp             HHHHHTTTCHH-----HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHH-----HHHHHHHHH-----HHHHHHHHhCCccCCCHHHHHHHHHHHHHHH
Confidence            77653221110     112233222     22333332    2356777778777765543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2e-09  Score=119.36  Aligned_cols=398  Identities=11%  Similarity=0.125  Sum_probs=241.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC----ChhhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChh
Q 009665           73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERS----PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  148 (529)
Q Consensus        73 l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~----~~~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~  148 (529)
                      ++.++..+.+++...+..+..+|+.++..-..    ......+-..+++.+...+....++.++..++.+|..+....+.
T Consensus        85 ~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~  164 (1207)
T d1u6gc_          85 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG  164 (1207)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence            44445555555555665555555555432100    01111112234455556555555488999999999988752221


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       149 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      ..... ...+++.|+..+.+++..+|..|+.+|+.++...+.   . .-...+..++..+..+.+...++.++.++..++
T Consensus       165 ~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~---~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~  239 (1207)
T d1u6gc_         165 LLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---I-VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS  239 (1207)
T ss_dssp             SCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH---H-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            11000 113467777888889999999999999999865432   1 112346677777755556666777888888888


Q ss_pred             cCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHh-----------------
Q 009665          229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-----------------  291 (529)
Q Consensus       229 ~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-----------------  291 (529)
                      +..+..-......++|.+...+..++++++..++.++..++...+........ .+++.+...                 
T Consensus       240 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~  318 (1207)
T d1u6gc_         240 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDEN  318 (1207)
T ss_dssp             HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-------------
T ss_pred             HHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHh
Confidence            76554444556789999999999999999999999998887543322111111 111111111                 


Q ss_pred             --------------------cCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHH
Q 009665          292 --------------------LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  351 (529)
Q Consensus       292 --------------------L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  351 (529)
                                          ..+..+.++..++.+|+.++...+......+. .+++.++..+.+. ++.+|..+..++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~-~~~~~L~~~l~d~-~~~vr~~~~~~l~  396 (1207)
T d1u6gc_         319 AMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKER-EENVKADVFHAYL  396 (1207)
T ss_dssp             -----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCS-SSHHHHHHHHHHH
T ss_pred             hhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence                                12345678899999999998876655544443 6889999999887 8899999999888


Q ss_pred             HHhcC---CHH-------------HHHHHHH--cCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 009665          352 NITAG---NVN-------------QIQAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  413 (529)
Q Consensus       352 nl~~~---~~~-------------~~~~l~~--~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  413 (529)
                      .+...   ...             ....+.+  ..+++.+...+.+.++.++..+..++..++.........++.  .++
T Consensus       397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~  474 (1207)
T d1u6gc_         397 SLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VLV  474 (1207)
T ss_dssp             HHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HHH
T ss_pred             HHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hhH
Confidence            77641   000             0011111  225667777788889999999999998887533212212211  135


Q ss_pred             HHHHhccCCC--CHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009665          414 KPLCDLLNCP--DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  491 (529)
Q Consensus       414 ~~L~~lL~~~--~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~  491 (529)
                      +.+...+...  ...++..++.++..++.......          +...+.  ...+.+.....+.+.++...|...+..
T Consensus       475 ~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~----------~~~~~~--~l~~~~~~~~~~~~~~i~~~al~~~~~  542 (1207)
T d1u6gc_         475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV----------FHPHVQ--ALVPPVVACVGDPFYKITSEALLVTQQ  542 (1207)
T ss_dssp             HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----------GHHHHT--TTHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHH----------HHHHHH--hhhhhHHHHHccccHHHHHHHHHHHHH
Confidence            5566666543  34677778888888876432211          122221  224455555667777777666555544


Q ss_pred             h
Q 009665          492 Y  492 (529)
Q Consensus       492 ~  492 (529)
                      +
T Consensus       543 l  543 (1207)
T d1u6gc_         543 L  543 (1207)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=2.1e-08  Score=106.34  Aligned_cols=391  Identities=12%  Similarity=0.080  Sum_probs=244.0

Q ss_pred             HHHHH-HhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCChhhH
Q 009665           73 LPAMV-AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENT  150 (529)
Q Consensus        73 l~~l~-~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~  150 (529)
                      +-.++ ..+.++|+.+|.+|-..|.++....         ..+++..|.+.+.+.+ ++.+|..|+-.|.|.........
T Consensus         6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~   76 (861)
T d2bpta1           6 FAQLLENSILSPDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK   76 (861)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC---------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence            34444 4467999999999999998875421         1246677888886643 36788889888888765332111


Q ss_pred             HHH------------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhccchhHHHH
Q 009665          151 RVV------------IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSML  217 (529)
Q Consensus       151 ~~~------------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~  217 (529)
                      ...            ....+-..++..+.+++..++..++.+++.++... +..+  .  ...++.|+..+..+.+...+
T Consensus        77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~  152 (861)
T d2bpta1          77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVK  152 (861)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHH
T ss_pred             hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHH
Confidence            100            00122356777788889999999999999987321 1000  0  01355566666444456677


Q ss_pred             HHHHHHHhhhhcCCCCCc---hhhhhchHHHHHHhhcc--CChHHHHHHHHHHHHhccCCchhHH-HHHHhCcHHHHHHh
Q 009665          218 RNATWTLSNFCRGKPQPL---FEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVEL  291 (529)
Q Consensus       218 ~~a~~~L~~l~~~~~~~~---~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~l  291 (529)
                      ..++.+|..++.......   ......+++.++..+.+  .+..++..++.++.++...-..... ......+++.+...
T Consensus       153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  232 (861)
T d2bpta1         153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA  232 (861)
T ss_dssp             HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHH
Confidence            788899999987652222   22234455555555543  3578999999999988765432211 12223466778888


Q ss_pred             cCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH------
Q 009665          292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII------  365 (529)
Q Consensus       292 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~------  365 (529)
                      +.++++.++..++.++..++..........+..-+...+.....+. ++.++..++..+..++...........      
T Consensus       233 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  311 (861)
T d2bpta1         233 TQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSP  311 (861)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            8999999999999999999875544433333322333344455565 888999998888877653111111110      


Q ss_pred             ----------HcCCHHHHHHHHhcC-------ChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHH
Q 009665          366 ----------EAGIIGPLVNLLLNA-------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV  428 (529)
Q Consensus       366 ----------~~~~l~~L~~~l~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~  428 (529)
                                -..+++.+...+...       +...+..+..++..++..........     ..+.+...+.+.++..+
T Consensus       312 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  386 (861)
T d2bpta1         312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNR  386 (861)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHH
Confidence                      012455666666432       33577777777777765332222222     24456667778899999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      ..++.++..+.......          .....+.  ..++.+..+..++++.|+..|.+.+.++..
T Consensus       387 ~~a~~~l~~i~~~~~~~----------~~~~~l~--~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         387 EAAVMAFGSIMDGPDKV----------QRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHHHHHHHTSSSSCHH----------HHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchh----------hHHHHHH--HHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            99998888776543221          1122222  236777888889999999999888876643

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9e-08  Score=101.65  Aligned_cols=398  Identities=13%  Similarity=0.087  Sum_probs=244.1

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCChh----------hHHhhcCChHHHHHhhcCCCChHHHHHHHHHHH
Q 009665           73 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPI----------NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT  140 (529)
Q Consensus        73 l~~l~~~L~s--~~~~~~~~a~~~l~~lls~~~~~~~----------~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~  140 (529)
                      +..+.+.+.+  .+..+|..|+..|++.+........          ..-....+...++..+.+++  .++..++.++.
T Consensus        37 ~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~i~  114 (876)
T d1qgra_          37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQCVA  114 (876)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHH
Confidence            4445554543  3577899999999988754311100          00112234457778887765  34556788888


Q ss_pred             HHhcCC-hhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-hhHHH
Q 009665          141 NIASGT-SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSM  216 (529)
Q Consensus       141 ~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~  216 (529)
                      .++... |...    =.++++.|++.+.++  +..++..++.+|+.++.+-......-....+++.++..+... .+..+
T Consensus       115 ~i~~~~~p~~~----Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v  190 (876)
T d1qgra_         115 GIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV  190 (876)
T ss_dssp             HHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHH
T ss_pred             HHHHHHCCccc----cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHH
Confidence            887621 1000    025688888888663  477899999999999753221110101122456666666432 35678


Q ss_pred             HHHHHHHHhhhhcCCCC--CchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCC
Q 009665          217 LRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  294 (529)
Q Consensus       217 ~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  294 (529)
                      +..++.++.+.......  ........+++.+...+.+++++++..++.++..++....+.....+...+...+...+.+
T Consensus       191 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  270 (876)
T d1qgra_         191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS  270 (876)
T ss_dssp             HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence            88888888776654311  1112223466677788888999999999999999987655555545555666677777788


Q ss_pred             CCcchHHHHHHHHHHhhcCChhhHHH--------------------HHhcCChHHHHHHhccC------CchhHHHHHHH
Q 009665          295 PSPSVLIPALRTVGNIVTGDDMQTQC--------------------IINHQALPCLLDLLTQN------YKKSIKKEACW  348 (529)
Q Consensus       295 ~~~~v~~~al~~L~~l~~~~~~~~~~--------------------~~~~~~l~~L~~lL~~~------~~~~v~~~a~~  348 (529)
                      ..+.++..++..+..++.........                    .....+++.+...+...      ....++..|..
T Consensus       271 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~  350 (876)
T d1qgra_         271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV  350 (876)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHH
Confidence            88888888888888776522111100                    01112334444444321      13457888888


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHH
Q 009665          349 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV  428 (529)
Q Consensus       349 ~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~  428 (529)
                      ++..++...+..   +++ .+++.+...+.+.++..+..++.+++.++.+.......... ..+++.+...+.++++.++
T Consensus       351 ~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr  425 (876)
T d1qgra_         351 CLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVR  425 (876)
T ss_dssp             HHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHhhhh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHH
Confidence            887776532211   111 14456666777789999999999999998876655544433 2468889999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q 009665          429 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  493 (529)
Q Consensus       429 ~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  493 (529)
                      ..+++++..++........      ...+...     .+..+.... ++++.+...+.+.+..+.
T Consensus       426 ~~a~~~l~~~~~~~~~~~~------~~~~~~~-----~~~~l~~~l-~~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         426 DTAAWTVGRICELLPEAAI------NDVYLAP-----LLQCLIEGL-SAEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHHHHHHHHCGGGTS------STTTHHH-----HHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcchhhh------hHHHhhh-----HHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            9999999999876543211      0011111     123333322 457888888877776654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.2e-08  Score=108.47  Aligned_cols=356  Identities=13%  Similarity=0.105  Sum_probs=219.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcCCC-ChHHHHHHHHHHHHHhcCC-hhhHH
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGT-SENTR  151 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~~~-~~~v~~~a~~~L~~l~~~~-~~~~~  151 (529)
                      ..++..+.+++. .+..++.++..++..+  -+...  -.+++|.|++.+.+++ .+.++..++.+|..++... ++...
T Consensus        93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~--~p~~~--Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~  167 (876)
T d1qgra_          93 NYVLHTLGTETY-RPSSASQCVAGIACAE--IPVNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ  167 (876)
T ss_dssp             HHHHHHTTTCCS-SSCHHHHHHHHHHHHH--GGGTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG
T ss_pred             HHHHHHhcCCcH-HHHHHHHHHHHHHHHH--CCccc--cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            456667776554 4455677777776432  11111  1357889998887654 3568888999999987522 21111


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHH-HHhcCChHHHHHHhccchhHHHHHHHHHHHhhhh
Q 009665          152 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  228 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~-~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  228 (529)
                      . .-..+++.++..+.+  ++.+++..++.++.+........... ....-++..+...+ .+.++.++..++.++..++
T Consensus       168 ~-~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l~  245 (876)
T d1qgra_         168 D-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIM  245 (876)
T ss_dssp             G-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence            1 112457788888865  46789999999998886543221111 01111233444444 6678899999999999998


Q ss_pred             cCCCCCchhhh-hchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhH--------------------HHHHHhCcHHH
Q 009665          229 RGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI--------------------QAVIEAGVCPR  287 (529)
Q Consensus       229 ~~~~~~~~~~~-~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~--------------------~~~~~~~~~~~  287 (529)
                      ...+....... ..+.+.+...+.+.++++...++..+..++.......                    .......+++.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (876)
T d1qgra_         246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (876)
T ss_dssp             HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            86543333333 3455566677778888888888887777664211111                    00111234445


Q ss_pred             HHHhcCC-------CCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC-CHH
Q 009665          288 LVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN  359 (529)
Q Consensus       288 L~~lL~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  359 (529)
                      +...+..       ....++..|..++..++.......   + ..+++.+...+.++ ++..|..++++++.++.+ ...
T Consensus       326 l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~  400 (876)
T d1qgra_         326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPS  400 (876)
T ss_dssp             HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHH
T ss_pred             hHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---h-hhhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHH
Confidence            5555433       234577777788777765332221   1 12445666677777 899999999999999875 344


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHHHHH
Q 009665          360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  439 (529)
Q Consensus       360 ~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~~l~  439 (529)
                      .....+. .+++.++..+.++++.++..|+|+++.++............-..+++.+...+. .++.+...+++++.++.
T Consensus       401 ~~~~~~~-~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         401 QLKPLVI-QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            4444443 378999999999999999999999999975321110000000113455555554 47888999999999887


Q ss_pred             Hhhh
Q 009665          440 KAGE  443 (529)
Q Consensus       440 ~~~~  443 (529)
                      ....
T Consensus       479 ~~~~  482 (876)
T d1qgra_         479 EAAY  482 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.7e-06  Score=81.59  Aligned_cols=319  Identities=13%  Similarity=0.137  Sum_probs=196.0

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHH---HHHhcCC--hHHHHHHhccchhHHHHHHHHHHHhhhhcCC
Q 009665          158 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRD---LVLSNGA--LMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  231 (529)
Q Consensus       158 ~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~---~~~~~~~--i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  231 (529)
                      ++..++.+|.. ..+++.+..+..+..+..+.+....   .+.+...  -.++...+ ...+.-....++..+..++...
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l-~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhc-cCchhHHHHHHHHHHHHHHhcc
Confidence            46667777765 5677777777777777655442211   1111111  22334444 4455666667777777776654


Q ss_pred             CCCch--hhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHH--HhCcHHHHHHhcCC----C--------
Q 009665          232 PQPLF--EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI--EAGVCPRLVELLRH----P--------  295 (529)
Q Consensus       232 ~~~~~--~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~~L~~lL~~----~--------  295 (529)
                      .....  .........+..+....+.+...-++.++..+...+..+ ..+.  +...++.++.+|..    .        
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R-~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHH-HHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            22211  112223334444556678888888888888887765433 3332  23445555555532    1        


Q ss_pred             -----CcchHHHHHHHHHHhhcCChhhHHHHHhc--CChHHHHHHhccCCchhHHHHHHHHHHHHhcCC----HH-HHHH
Q 009665          296 -----SPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKEACWTISNITAGN----VN-QIQA  363 (529)
Q Consensus       296 -----~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~----~~-~~~~  363 (529)
                           ...+...++.|++-++. ++.....+.+.  +.++.++.+++.....++.+-++.++.|++...    .. ....
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~  311 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL  311 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence                 12467789999999886 45455555544  347888888876658889999999999998731    11 2334


Q ss_pred             HHHcCCHHHHHHHHhcC---ChhHHHHHHHHHHHHhc----CC-----------------CHHHH-HHHHH--------c
Q 009665          364 IIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATS----GG-----------------SNEQI-KFLVS--------Q  410 (529)
Q Consensus       364 l~~~~~l~~L~~~l~~~---~~~v~~~a~~aL~nl~~----~~-----------------~~~~~-~~l~~--------~  410 (529)
                      ++..++++. +..|...   |+++....- .|.....    .-                 +|.+. +.|..        .
T Consensus       312 ~v~~~~l~~-l~~L~~r~~~Dedl~edl~-~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         312 LLLGNALPT-VQSLSERKYSDEELRQDIS-NLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHCHHHH-HHHHHSSCCSSHHHHHHHH-HHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHcchhHH-HHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            556666655 4555543   777654332 2222221    00                 11111 12221        1


Q ss_pred             --CChHHHHhccC----------CCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCC
Q 009665          411 --GCIKPLCDLLN----------CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN  478 (529)
Q Consensus       411 --~~l~~L~~lL~----------~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~  478 (529)
                        .++..|+.+|+          +.|+.+...||.=|+.+++..+..            +..+++.|+-+.+-+|+.|+|
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g------------r~il~~lg~K~~vM~Lm~h~d  457 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES------------IDVLDKTGGKADIMELLNHSD  457 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH------------HHHHHHHSHHHHHHHHTSCSS
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch------------hHHHHHcCcHHHHHHHhcCCC
Confidence              33788888885          346778888888888888876532            777889999999999999999


Q ss_pred             HHHHHHHHHHHHhhC
Q 009665          479 TEIYEKAVKILETYW  493 (529)
Q Consensus       479 ~~v~~~a~~il~~~~  493 (529)
                      ++|+..|...++++.
T Consensus       458 ~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         458 SRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=7.4e-07  Score=84.02  Aligned_cols=276  Identities=12%  Similarity=0.116  Sum_probs=179.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCh--hhHHhhcCChHHHHHhhcCCCChHHHHHHHHHHHHHhcCChhhHH
Q 009665           74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  151 (529)
Q Consensus        74 ~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~~i~~g~i~~Li~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  151 (529)
                      +.+...+.+++.-....+...+..+++......  .+....  ....+..+...++ .+.+..++.++..+.. .++.|.
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~--~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~  200 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLK--NNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRD  200 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHH--CHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHH--hhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHH
Confidence            344455666666677777777777776542211  111221  2233333445555 7888899999999988 688888


Q ss_pred             HHHh--CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhcc
Q 009665          152 VVID--HGAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNE  210 (529)
Q Consensus       152 ~~~~--~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~l~~~l~~  210 (529)
                      .+..  ...++.|+..|..                 ....++-+++.+++-++.+.. ....+....  .++.++.++..
T Consensus       201 ~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~  279 (477)
T d1ho8a_         201 VIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKI  279 (477)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHh
Confidence            7754  2345555555532                 134778899999999987544 455555543  47888888877


Q ss_pred             chhHHHHHHHHHHHhhhhcCCCCCc------hhhhhchHHHHHHhhcc--CChHHHHHHHHHHHHh-------cc-----
Q 009665          211 HAKLSMLRNATWTLSNFCRGKPQPL------FEQTRPALPALERLIHS--NDDEVLTDACWALSYL-------SD-----  270 (529)
Q Consensus       211 ~~~~~~~~~a~~~L~~l~~~~~~~~------~~~~~~~l~~L~~ll~~--~d~~v~~~a~~~L~~l-------~~-----  270 (529)
                      .....+.+.++.++.|++.......      .....++++.+..+...  .|+++..+.-..-..|       +.     
T Consensus       280 s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~  359 (477)
T d1ho8a_         280 TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV  359 (477)
T ss_dssp             CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7788999999999999997642211      12223455544333332  3777655433221111       11     


Q ss_pred             ---------CCc-hhHHHHHH----------hCcHHHHHHhcC----------CCCcchHHHHHHHHHHhhcCChhhHHH
Q 009665          271 ---------GTN-DKIQAVIE----------AGVCPRLVELLR----------HPSPSVLIPALRTVGNIVTGDDMQTQC  320 (529)
Q Consensus       271 ---------~~~-~~~~~~~~----------~~~~~~L~~lL~----------~~~~~v~~~al~~L~~l~~~~~~~~~~  320 (529)
                               .++ .....+..          ..++..|+.+|.          +.++.+..-||.=||.++...+..+..
T Consensus       360 ~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~i  439 (477)
T d1ho8a_         360 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDV  439 (477)
T ss_dssp             HHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHH
Confidence                     111 11111221          146888999985          235667788999999999999988888


Q ss_pred             HHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhc
Q 009665          321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  355 (529)
Q Consensus       321 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  355 (529)
                      +-+.|+=..++.+|.++ +++||.+|..++.-+..
T Consensus       440 l~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         440 LDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            88889999999999999 99999999999987754

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.45  E-value=2.2e-08  Score=77.07  Aligned_cols=109  Identities=18%  Similarity=0.222  Sum_probs=89.1

Q ss_pred             cCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 009665          292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  371 (529)
Q Consensus       292 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~  371 (529)
                      |.++++.+|..|+++|+.+..            ..++.|+..|.++ ++.+|..|+++|+++..  +.         .++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~~---------~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER---------AVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--hh---------hHH
Confidence            467788899999999887532            3467788999988 99999999999998753  22         468


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHHH
Q 009665          372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  436 (529)
Q Consensus       372 ~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL~  436 (529)
                      .|..++.++++.||..|+++|+.+-   ++.         .++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~---~~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhC---ccc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8899999999999999999999883   222         4677888999999999999988875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.29  E-value=3.5e-08  Score=75.96  Aligned_cols=111  Identities=24%  Similarity=0.364  Sum_probs=88.2

Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q 009665          334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  413 (529)
Q Consensus       334 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  413 (529)
                      |.++ ++.||..|+++|+.+..            ..++.|+..+.++++.+|..|+++|+++..   +.         .+
T Consensus         1 L~D~-~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~---~~---------~~   55 (111)
T d1te4a_           1 MADE-NKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD---ER---------AV   55 (111)
T ss_dssp             CCSS-CCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS---HH---------HH
T ss_pred             CCCc-CHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch---hh---------hH
Confidence            3455 78889999998876532            256788899999999999999999987743   22         46


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 009665          414 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  492 (529)
Q Consensus       414 ~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  492 (529)
                      +.|..+|+++++.|+..++++|..+   +.                    .+.++.|..+..++++.|+..|...|++|
T Consensus        56 ~~L~~~l~d~~~~VR~~a~~aL~~i---~~--------------------~~~~~~L~~ll~d~~~~vr~~A~~aL~th  111 (111)
T d1te4a_          56 EPLIKLLEDDSGFVRSGAARSLEQI---GG--------------------ERVRAAMEKLAETGTGFARKVAVNYLETH  111 (111)
T ss_dssp             HHHHHHHHHCCTHHHHHHHHHHHHH---CS--------------------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HHHHhhhccchhHHHHHHHHHHHHh---Cc--------------------cchHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence            7788889999999999999999865   11                    22366788889999999999999998865

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.0066  Score=53.19  Aligned_cols=206  Identities=15%  Similarity=0.110  Sum_probs=152.1

Q ss_pred             HHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHH
Q 009665          277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  352 (529)
Q Consensus       277 ~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  352 (529)
                      +.+...+++..|+..|..-+.+.+..+..+++++......    ....+...  .+.+..++....++++-..+...|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            4466678899999999988888999999999999875432    23444421  24444444333356677777777777


Q ss_pred             HhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHc--CChHHHHhccCCCCHHHHHH
Q 009665          353 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--GCIKPLCDLLNCPDPRIVTV  430 (529)
Q Consensus       353 l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~lL~~~~~~v~~~  430 (529)
                      ++.. ......++....+..+.+.+..++.++...|...+..+......-...+|..+  .+...+..+|.+++.-++..
T Consensus       141 cik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         141 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            7776 67778888888999999999999999999999999999886433333444332  34677788999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q 009665          431 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  494 (529)
Q Consensus       431 ~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  494 (529)
                      ++..|+.++......         +.+...+.+..-+..+-.|..+++..|+-.|.++..-|..
T Consensus       220 SlKLLgelLldr~N~---------~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         220 SLKLLGELLLDRHNF---------TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHHHSGGGH---------HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHH---------HHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence            999999998765432         2345566666678888888889998888888887765543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0048  Score=54.04  Aligned_cols=202  Identities=13%  Similarity=0.124  Sum_probs=143.6

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH----HHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhh
Q 009665          152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  227 (529)
Q Consensus       152 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  227 (529)
                      .+...+.+..|+..|..-+.+.|..+..+++++.+.....+    +.+..  -...+..++..-.++++.-.+-..|...
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            45556788899999988889999999999999986544332    44443  2234444443334566655565666655


Q ss_pred             hcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHh---CcHHHHHHhcCCCCcchHHHHH
Q 009665          228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPAL  304 (529)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~al  304 (529)
                      ++...-.......+.+..+.+.+..++=++..+|..++..+..........++..   .++.....+|.+++.-++..++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            5554333334445666677788888899999999999998876555544555544   4567778899999999999999


Q ss_pred             HHHHHhhcCChhh--H-HHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcC
Q 009665          305 RTVGNIVTGDDMQ--T-QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  356 (529)
Q Consensus       305 ~~L~~l~~~~~~~--~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  356 (529)
                      ..||.+.......  . ..+-+..-+..++.+|++. +..++-+|..++--+.+.
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVAN  275 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVAN  275 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcC
Confidence            9999998643321  1 2223456688899999998 999999999999888873

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.031  Score=58.59  Aligned_cols=305  Identities=10%  Similarity=0.058  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHhc----CChHHH
Q 009665          131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSN----GALMPL  204 (529)
Q Consensus       131 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~----~~i~~l  204 (529)
                      .+..|..++..++...++.....+..-+...+.....  +.+...++.++.+++.++.............    ...+.+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            4666666777777644333222211111112222222  2567788888888888863221110000000    111112


Q ss_pred             H----HHhc--cchhHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCch----
Q 009665          205 L----AQFN--EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND----  274 (529)
Q Consensus       205 ~----~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~----  274 (529)
                      .    ..+.  ....+.++..++|+++..+....   ......+++.++.+|.+++..|+..|++++..++.....    
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~  533 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccc
Confidence            2    2221  22346688889999999887542   234567899999999999999999999999998753221    


Q ss_pred             -------hHHHHHHhCcHHHHHHhcCCCCcc-----hHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHh----ccCC
Q 009665          275 -------KIQAVIEAGVCPRLVELLRHPSPS-----VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL----TQNY  338 (529)
Q Consensus       275 -------~~~~~~~~~~~~~L~~lL~~~~~~-----v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~~~  338 (529)
                             .....+. .++..++..+......     ....++.+++.++....+....... .+++.+...+    +++.
T Consensus       534 ~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~  611 (959)
T d1wa5c_         534 AFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPS  611 (959)
T ss_dssp             CBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCC
T ss_pred             hhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCcc
Confidence                   1111111 3344455555332221     2234566666655322211111111 1233333333    3443


Q ss_pred             chhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q 009665          339 KKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  417 (529)
Q Consensus       339 ~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  417 (529)
                      ++.....+..+++.+... +++....+. ..++|.+...+.....+....+...+..+...... ....+  ...++.++
T Consensus       612 ~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~--~~l~~~l~  687 (959)
T d1wa5c_         612 NPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSAT-IPESI--KPLAQPLL  687 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSS-CCTTT--GGGHHHHT
T ss_pred             chHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCC-ccHHH--HHHHHHHh
Confidence            556667777778877652 344433333 34788888888877667777777776666543210 00000  01223333


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHhhhh
Q 009665          418 DLLNCPDPRIVTVCLEGLENILKAGEA  444 (529)
Q Consensus       418 ~lL~~~~~~v~~~~l~aL~~l~~~~~~  444 (529)
                      .............+...+.+++..+..
T Consensus       688 ~~~~~~~~~~~~~~~~~l~~~~~~~~~  714 (959)
T d1wa5c_         688 APNVWELKGNIPAVTRLLKSFIKTDSS  714 (959)
T ss_dssp             SGGGGCCTTTHHHHHHHHHHHHHHHGG
T ss_pred             hHHHHHHhhhHHHHHHHHHHHHHhCHH
Confidence            222223334455666677777666543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.029  Score=58.76  Aligned_cols=295  Identities=9%  Similarity=0.063  Sum_probs=148.3

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--------HHHHHh--c
Q 009665          129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--------RDLVLS--N  198 (529)
Q Consensus       129 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--------~~~~~~--~  198 (529)
                      +.++..++|+++..+.....  ...  ..+++.++.+|.+++..++..|++++..++......        .+.+..  .
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            67899999999998873321  111  246789999999999999999999999998532210        000000  0


Q ss_pred             CChHHHHHHhccch----hHHHHHHHHHHHhhhhcCCCCCchhhhhchHHHHHHhhc----c-CChHHHHHHHHHHHHhc
Q 009665          199 GALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S-NDDEVLTDACWALSYLS  269 (529)
Q Consensus       199 ~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~ll~----~-~d~~v~~~a~~~L~~l~  269 (529)
                      ..+..++..+....    .......+..++..+..............+++.+...+.    + .++.....+..+++.+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            12333343332211    111122344555544433222222333445555554442    2 25667777778888776


Q ss_pred             cCC-chhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhc---cCCchhHHHH
Q 009665          270 DGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKE  345 (529)
Q Consensus       270 ~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~v~~~  345 (529)
                      ... ++... -....++|.+...+..........++..++.+.......     .....+.+..++.   .. .......
T Consensus       628 ~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~-~~~~~~~  700 (959)
T d1wa5c_         628 NYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATI-----PESIKPLAQPLLAPNVWE-LKGNIPA  700 (959)
T ss_dssp             HTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSC-----CTTTGGGHHHHTSGGGGC-CTTTHHH
T ss_pred             HhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCc-----cHHHHHHHHHHhhHHHHH-HhhhHHH
Confidence            543 22223 233467788888887777777777888777776533221     1123333323222   11 2223344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC-CC
Q 009665          346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PD  424 (529)
Q Consensus       346 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~~  424 (529)
                      +..++.++....++.....  .+++..+..++....  ....+...+..++.....+.....+ ..++..+...+.. ..
T Consensus       701 ~~~~l~~~~~~~~~~~~~~--~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~~~~~~~~~l-~~i~~~~~~~l~~~~~  775 (959)
T d1wa5c_         701 VTRLLKSFIKTDSSIFPDL--VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYI-KQIAVLLLQRLQNSKT  775 (959)
T ss_dssp             HHHHHHHHHHHHGGGCSCS--HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHGGGSSCC
T ss_pred             HHHHHHHHHHhCHHhhcch--HHHHHHHHHHHCCCc--chHHHHHHHHHHHHHCchhhhHhHH-HHHHHHHHHHHHhccc
Confidence            4445544443211111000  012334444454432  2345666666666544333222111 1244455555544 34


Q ss_pred             HHHHHHHHHHHHHHH
Q 009665          425 PRIVTVCLEGLENIL  439 (529)
Q Consensus       425 ~~v~~~~l~aL~~l~  439 (529)
                      +.+....+..+..++
T Consensus       776 ~~~~~~~~~~~~~~~  790 (959)
T d1wa5c_         776 ERYVKKLTVFFGLIS  790 (959)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555554

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.67  E-value=0.00056  Score=58.69  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHH
Q 009665          158 AVPIFVRLLSSPTDDVREQAVWAL  181 (529)
Q Consensus       158 ~i~~L~~lL~~~~~~v~~~a~~~L  181 (529)
                      .+..|..+++.+++.||..++..|
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHc
Confidence            356777888888899988887543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.45  E-value=0.29  Score=43.88  Aligned_cols=208  Identities=15%  Similarity=0.125  Sum_probs=125.0

Q ss_pred             ChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc---chhHHHHHHHHHHHhhhhc---
Q 009665          158 AVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCR---  229 (529)
Q Consensus       158 ~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~---  229 (529)
                      .+..+.+++.+..  ..-....++.+.....  |. .+      .+..+..++..   ..++.+...+..+++++..   
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--Pt-~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--AT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--CC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--CC-HH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            3455666665532  3333444455544332  21 12      24455555532   1356666666666666544   


Q ss_pred             -CCCCCchhhhhchHHHHHHhhccCChHHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCC-------CcchHH
Q 009665          230 -GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-------SPSVLI  301 (529)
Q Consensus       230 -~~~~~~~~~~~~~l~~L~~ll~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-------~~~v~~  301 (529)
                       ..+.........+...+.+.....+.+-+..++.+|+|+..  +         +.++.+..++...       ...++.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence             33333333444555566666667788888888999999853  1         3456777777432       345889


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-
Q 009665          302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-  379 (529)
Q Consensus       302 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~-  379 (529)
                      .|++++.+++...+...+        +.++.++.+ ..+.++|..|+.+|... ..+..         .+..+...+.. 
T Consensus       229 aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E  290 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence            999999999876553332        345555533 33788999998888653 22233         34455665654 


Q ss_pred             CChhHHHHHHHHHHHHhcCCCHHH
Q 009665          380 AEFEIKKEAAWAISNATSGGSNEQ  403 (529)
Q Consensus       380 ~~~~v~~~a~~aL~nl~~~~~~~~  403 (529)
                      ++..|...+...|.+++....|..
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcch
Confidence            477898888889999988655443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.24  E-value=0.0021  Score=54.96  Aligned_cols=114  Identities=11%  Similarity=0.136  Sum_probs=61.5

Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHhhcCChhhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009665          285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  364 (529)
Q Consensus       285 ~~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  364 (529)
                      +..|..+++++++.|+..++..|+                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456777888888888888865432                  13455556666 6677766654321             


Q ss_pred             HHcCCHHHHHHHHhcCChhHHHHHHHH-----HHHHhcCCCHHHHHHHHHcCChHHHHhccCCCCHHHHHHHHHHH
Q 009665          365 IEAGIIGPLVNLLLNAEFEIKKEAAWA-----ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL  435 (529)
Q Consensus       365 ~~~~~l~~L~~~l~~~~~~v~~~a~~a-----L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~v~~~~l~aL  435 (529)
                           .+.|..++.++++.||..++..     |..++...+++........-..+.|..+++++++.|+..+...|
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                 1223333444444444444332     12222222333333333333456677777788888877766543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.24  E-value=0.14  Score=46.02  Aligned_cols=169  Identities=14%  Similarity=0.203  Sum_probs=102.0

Q ss_pred             hHHHHHHhhcc----CChHHHHHHHHHHHHhcc----CCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 009665          242 ALPALERLIHS----NDDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  313 (529)
Q Consensus       242 ~l~~L~~ll~~----~d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l~~~  313 (529)
                      .+..+..++.+    .++.+...+.-+++.++.    ........+++ .+...+.+....++..-...++.+|||+.. 
T Consensus       124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-  201 (336)
T d1lsha1         124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ-  201 (336)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHH-HHHHHHHHhhcccchHHHHHHHHHHhccCC-
Confidence            34445555553    467787888888877653    11111111111 122333344455666667788999999864 


Q ss_pred             ChhhHHHHHhcCChHHHHHHhccC------CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--ChhHH
Q 009665          314 DDMQTQCIINHQALPCLLDLLTQN------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIK  385 (529)
Q Consensus       314 ~~~~~~~~~~~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~  385 (529)
                       +         ..++.|..++...      .+..+|..|+|++.+++...+..+        .+.+..++.+.  ++++|
T Consensus       202 -p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvR  263 (336)
T d1lsha1         202 -P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELR  263 (336)
T ss_dssp             -G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHH
T ss_pred             -H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHH
Confidence             3         3456666666431      256799999999999988766543        23445555543  78999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccC-CCCHHHHHHHHHHHHHHHHh
Q 009665          386 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKA  441 (529)
Q Consensus       386 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~~~~v~~~~l~aL~~l~~~  441 (529)
                      ..|..+|...  ..+...         +..+...+. .++.+|...+...|.++...
T Consensus       264 iaA~~~lm~t--~P~~~~---------l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         264 IRSCIVFFES--KPSVAL---------VSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHHT--CCCHHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhc--CCCHHH---------HHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            9999988775  222233         334444443 46677877777777777653

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.83  Score=40.79  Aligned_cols=155  Identities=10%  Similarity=0.068  Sum_probs=97.1

Q ss_pred             HHHhhcCCC-HHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhc----C-----C-CChHHHHHHHHHHHHHhc
Q 009665           76 MVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS----R-----D-DFPQLQFEAAWALTNIAS  144 (529)
Q Consensus        76 l~~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~----~-----~-~~~~v~~~a~~~L~~l~~  144 (529)
                      .+..|+++- .+.....+..|+--+.......++.+. .+++..|+.+|.    .     + .+...+..++.||..+..
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F~-~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHHH-hccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            344444332 223344455555445544333456663 455666666653    1     1 124678999999999998


Q ss_pred             CChhhHHHH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--chhHHH----------HHhcCChHHHHHHhccc
Q 009665          145 GTSENTRVV-IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS--PKCRDL----------VLSNGALMPLLAQFNEH  211 (529)
Q Consensus       145 ~~~~~~~~~-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~--~~~~~~----------~~~~~~i~~l~~~l~~~  211 (529)
                       +......+ -..+++..+...|.++...++..|+..|..+|...  +.....          .-+.+-..+++..+...
T Consensus        86 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          86 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             -cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence             44444444 45688999999999999999999999999998532  222222          22345567777777555


Q ss_pred             hhHHHHHHHHHHHhhhhcCCC
Q 009665          212 AKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       212 ~~~~~~~~a~~~L~~l~~~~~  232 (529)
                      .+.+....++..+-.++.+.+
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~  185 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAE  185 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCS
T ss_pred             ccHHHHHHHHHHHHHHHcCcc
Confidence            566666666666666666543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.08  E-value=0.86  Score=40.71  Aligned_cols=162  Identities=17%  Similarity=0.140  Sum_probs=108.2

Q ss_pred             ChhhHHHHHhcCChHHHHHHhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCCh
Q 009665          314 DDMQTQCIINHQALPCLLDLLTQ----------NYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEF  382 (529)
Q Consensus       314 ~~~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~  382 (529)
                      ...+.+.+ ..+++..|+.+|..          ..+.....++..||..+... ......++. .+.+..+...+.++.+
T Consensus        35 ~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~  112 (343)
T d2bnxa1          35 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVP  112 (343)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred             CchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCch
Confidence            33444444 33455555555521          11345677888899888875 555666664 5678999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCC-----HHHHH------HHHHcCChHHHHhccCCC-CHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 009665          383 EIKKEAAWAISNATSGGS-----NEQIK------FLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGN  450 (529)
Q Consensus       383 ~v~~~a~~aL~nl~~~~~-----~~~~~------~l~~~~~l~~L~~lL~~~-~~~v~~~~l~aL~~l~~~~~~~~~~~~  450 (529)
                      .++..|...|..++....     .....      ...+.+-...+++.++.. +.+.+..++..+..++...+....   
T Consensus       113 ~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~---  189 (343)
T d2bnxa1         113 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF---  189 (343)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH---
T ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH---
Confidence            999999999998875421     11111      222345577888877754 567888888888777765544321   


Q ss_pred             CCccchHHHHHHhhchHHHHHHHhcCCCHHHHH
Q 009665          451 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE  483 (529)
Q Consensus       451 ~~~~~~~~~~i~~~g~~~~l~~L~~~~~~~v~~  483 (529)
                         -......|...|..+.+..+...+++++..
T Consensus       190 ---R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         190 ---RVHIRSELMRLGLHQVLQELREIENEDMKV  219 (343)
T ss_dssp             ---HHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             ---HHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence               123566777889999999998888877654

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.26  E-value=2.2  Score=32.34  Aligned_cols=72  Identities=8%  Similarity=-0.050  Sum_probs=59.4

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK  440 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~~  440 (529)
                      .+..|..-+.++++.++..|+..|-.++.++++.+...+.+.+++..|..++..      .+..|+..++..|.....
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            345566667888999999999999999999988888888888899999998863      566788888888877654

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.43  E-value=1.9  Score=38.05  Aligned_cols=190  Identities=13%  Similarity=0.054  Sum_probs=101.9

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccchhHHHHHHHHHHHhhhhcCCC
Q 009665          153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  232 (529)
Q Consensus       153 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  232 (529)
                      .++...+..|+.++.++++.=|.....+|..+.+.....|..+.. .+...+.+.+..+........+++.+..+..+..
T Consensus       129 ~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~  207 (343)
T d2jaka1         129 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFA  207 (343)
T ss_dssp             TSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred             hCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhcc
Confidence            344456788899999999999999999999987666666665443 3344555655444444455566777777777653


Q ss_pred             CC-chhhhhchHHHHHHhhccCCh-HHHHHHHHHHHHhccCCchhHHHHHHhCcHHHHHHhcCCCCcchHHHHHHHHHHh
Q 009665          233 QP-LFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  310 (529)
Q Consensus       233 ~~-~~~~~~~~l~~L~~ll~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~al~~L~~l  310 (529)
                      .+ ......-....++.+.+...- ..-.....++..+...++.....+     +..+++.=-..+..-...-+.-|..+
T Consensus       208 ~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-----i~~llk~WP~t~~~Kev~FL~el~~i  282 (343)
T d2jaka1         208 LPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEEI  282 (343)
T ss_dssp             SSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHHH
Confidence            32 233333344445555544322 122333333444443333332222     12222221112333334445556665


Q ss_pred             hcCCh-hhHHHHHhcCChHHHHHHhccCCchhHHHHHHHHH
Q 009665          311 VTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  350 (529)
Q Consensus       311 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  350 (529)
                      ....+ ...+.+. ..++..+...+.++ +.+|.+.|+...
T Consensus       283 l~~~~~~~f~~~~-~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         283 LDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHhCCHHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            54433 2222222 24666777777777 777777766544

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.17  E-value=3.7  Score=31.03  Aligned_cols=72  Identities=19%  Similarity=0.274  Sum_probs=55.2

Q ss_pred             ChHHHHhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchHHHHHHhhchHHHHHHHh-cCCCHHHHHHHHHHHH
Q 009665          412 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILE  490 (529)
Q Consensus       412 ~l~~L~~lL~~~~~~v~~~~l~aL~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~l~~L~-~~~~~~v~~~a~~il~  490 (529)
                      ++..|..-+.++++.++..++..|..+++.+..           .|...+...+.++.+..+. ...+..|++++..++.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~-----------~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~  111 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA-----------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ  111 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-----------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccch-----------HHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            355666677889999999999999999877533           2566666677788887775 4457889999999999


Q ss_pred             hhCC
Q 009665          491 TYWV  494 (529)
Q Consensus       491 ~~~~  494 (529)
                      .+-.
T Consensus       112 ~W~~  115 (145)
T d1dvpa1         112 TWAY  115 (145)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8654

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.90  E-value=1.3  Score=33.76  Aligned_cols=75  Identities=12%  Similarity=0.027  Sum_probs=59.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCChhhHHhhcCChHHHHHhhcC------CCChHHHHHHHHHHHHHhc
Q 009665           71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS  144 (529)
Q Consensus        71 ~~l~~l~~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~~i~~g~i~~Li~lL~~------~~~~~v~~~a~~~L~~l~~  144 (529)
                      +.+..+.+.|++.++.++..|+..|-.+..+-+.....++...+++..|+++++.      .+ +.++..++..+...+.
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~-~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCc-HHHHHHHHHHHHHHHH
Confidence            4677888889999999999999999888876444455677788899999999863      33 6899999988888765


Q ss_pred             CC
Q 009665          145 GT  146 (529)
Q Consensus       145 ~~  146 (529)
                      ..
T Consensus       124 ~f  125 (145)
T d1ujka_         124 GL  125 (145)
T ss_dssp             HC
T ss_pred             HC
Confidence            33

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.63  E-value=3.8  Score=30.91  Aligned_cols=72  Identities=8%  Similarity=-0.079  Sum_probs=58.9

Q ss_pred             CHHHHHHHHhcCChhHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHhccCC------CCHHHHHHHHHHHHHHHH
Q 009665          369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK  440 (529)
Q Consensus       369 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~~~~v~~~~l~aL~~l~~  440 (529)
                      .+..|..-+.++++.++..|+..|-.+..++++.+...+....++..|..++..      .++.|+..++..+.....
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            344566667888999999999999999999888888888888889999998863      567899888888876654