Citrus Sinensis ID: 009682

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
cccccHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHcccccEEEEEEcEEEEEEEEEEcccEEEEEcccccEEEEcccccccccccccEEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEcEEEEEcccccccccccEEEEccEEEEEccEEEcccEEEEEccEEEEEcccccccEEEcccccccccccEEEEEccEEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
cccHHEEEEEEHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccEEEcccccccEccHHHHHHHccccccccEEEccEEEEEEEEccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEcccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEccccccccccccccccccEEEEEccEcHHHccccccccccEEEccHHHHHHccHHHHHccccccccccccccccc
METPPWFTIILLWLLSASMswgamhsnnYQNKIQkecsftrfpILCVQTLmgfestkhQQHIHLMSALVNKSiaetklptsyfsnfssQLLAKDFQDHCEEMMSMSLKRLEKSLLALqnsptknkdDIQTWLGAALTFQQTCKDsvnslglseRNEVIKKISQKMDYLSQLTSNPLALVNRIArasypknstynrrldeeqgdfpnwvsAKNRkllqaprinanvivaqdgtgnyRTVSEAISAASGNRFVIYVKAGVykekirtnkdgitligdgkyttiitgddnarrgtsmpatatftitgdgfiardigfhntagpqgEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFyrdtdiygtidFIFGNAAAVFQNCYlvlrrpkgsynaitangrtdpgqntgfslqnckiaagsdyapvkhkynsylgrpwkqYSRAVVMQSSiddsisssgwvewpgaggyantLYFAEyanvgpgaatsnrvkwpgfhvigpdvaVKFTVANFiagtswlpstgvifdggl
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSvnslglserNEVIKKISQKMDYLSQLTSNPLALVNRIarasypknstynrrLDEEQGDFPNWVSAKNRkllqaprinANVIVAQDGTGNYRTVSEAisaasgnrfVIYVKAgvykekirtnkdgitligdgkyttiitgddnarrgtsmPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITAngrtdpgqntGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIagtswlpstgvifdggl
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQssiddsisssGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
****PWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQDH****************************DIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASY****************FPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANG******NTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIF****
***PPWFTIILLWLLSASMS***************ECSFTRFPILCV****************LMSALVNKSIAE******************DFQDHCEEMMSMSLKRLEKSL***********DDIQTWLGAALTFQQTCKDSVNSL***************MDYLSQLTSNPLALVNRIA*******************DFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
*ETPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIAR******************DFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIF****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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METPPWFTIILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSSQLLAKDFQDHCEEMMSMSLKRLEKSLLALQNSPTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query529 2.2.26 [Sep-21-2011]
Q3E989512 Probable pectinesterase/p yes no 0.875 0.904 0.487 1e-127
O04887510 Pectinesterase 2 OS=Citru no no 0.773 0.801 0.478 1e-109
P83947545 Pectinesterase/pectineste N/A no 0.780 0.757 0.461 1e-104
O22149511 Probable pectinesterase/p no no 0.775 0.802 0.466 1e-102
Q96576544 Pectinesterase 3 OS=Solan N/A no 0.786 0.764 0.454 1e-102
Q1JPL7557 Pectinesterase/pectineste no no 0.784 0.745 0.470 1e-102
Q9FK05587 Probable pectinesterase/p no no 0.935 0.843 0.409 1e-102
Q9M3B0598 Probable pectinesterase/p no no 0.922 0.816 0.412 1e-101
P83948584 Pectinesterase 3 OS=Citru no no 0.916 0.830 0.409 1e-101
Q9LYT5529 Probable pectinesterase/p no no 0.809 0.809 0.459 1e-101
>sp|Q3E989|PME54_ARATH Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1 Back     alignment and function desciption
 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/523 (48%), Positives = 326/523 (62%), Gaps = 60/523 (11%)

Query: 9   IILLWLL--SASMSWGAMHSN---NYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIH 63
           ++L W+L  +A +   A   N    YQN++Q+ CS T++  LCVQ L  F        + 
Sbjct: 6   MVLFWVLLVNALLIVDASSRNMPFAYQNEMQRHCSSTKYTSLCVQNLREFRHGS-LDGLD 64

Query: 64  LMSALVNKSIAETKL--PTSYFSNFSSQLLAKD----------FQDHCEEMMSMSLKRLE 111
            +S LVNK+I+++ L  P    S  SS+L++ +            D CE +M MS +RL 
Sbjct: 65  FVSFLVNKTISDSNLLIPPLSSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKMSTRRLR 124

Query: 112 KSLLALQNSPTKN--KDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLS 169
           +++ AL  S  K   K D+QTWL AA+TFQQ CKDS+   G S     I  ISQKMD+LS
Sbjct: 125 QAMEALNGSSRKRHTKHDVQTWLSAAMTFQQACKDSILDSGGSSSASAISHISQKMDHLS 184

Query: 170 QLTSNPLALVNRIARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQ 229
           +L SN L LV+ I +   PK  +            P WV+A  R+LL   R  A+V+VA+
Sbjct: 185 RLVSNSLTLVDTIMKNPKPKTKSTA---------LPRWVTAGERRLL-VGRARAHVVVAK 234

Query: 230 DGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNAR 289
           DG+G+YRTV EA++AA GN                           GK  T+I GDD+A 
Sbjct: 235 DGSGDYRTVMEAVTAAHGN---------------------------GKDLTVIVGDDSAT 267

Query: 290 RGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTL 349
            GTS+P TAT T+TGDGFIARDIG  N AGP+G QA+AL++ SD +V YRCSI+GYQDTL
Sbjct: 268 GGTSVPDTATMTVTGDGFIARDIGIKNIAGPRGHQAIALSITSDQSVLYRCSISGYQDTL 327

Query: 350 YALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKG--SYNAITANGRTDPGQNT 407
           YA ALRQFYR+ DIYGTIDFIFGNAAAVFQ+C + LRRP G  +YN I ANGRTD  QNT
Sbjct: 328 YAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGVKAYNVILANGRTDQRQNT 387

Query: 408 GFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGG 467
           GF+L +C+I   SD +PVKHKY+SYLGRPW++YSRA+VM+S IDD+I+  GW  W  +G 
Sbjct: 388 GFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGWLDSGD 447

Query: 468 YA-NTLYFAEYANVGPGAATSNRVKWPGFHVIGPDVAVKFTVA 509
               TLYF E+ N GP A  S RV W GFH IG + A  F+V 
Sbjct: 448 EVLKTLYFGEFKNYGPKARISKRVTWEGFHSIGFEEANYFSVV 490
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description
>sp|O22149|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 Back     alignment and function description
>sp|Q96576|PME3_SOLLC Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1 Back     alignment and function description
>sp|Q1JPL7|PME18_ARATH Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|Q9LYT5|PME35_ARATH Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
255550291527 Pectinesterase-2 precursor, putative [Ri 0.969 0.973 0.681 0.0
359484245506 PREDICTED: probable pectinesterase/pecti 0.935 0.978 0.645 0.0
356532840514 PREDICTED: LOW QUALITY PROTEIN: probable 0.937 0.964 0.623 1e-179
297812269527 pectinesterase family protein [Arabidops 0.860 0.863 0.509 1e-132
15242077512 Putative pectinesterase/pectinesterase i 0.875 0.904 0.487 1e-125
116788449571 unknown [Picea sitchensis] 0.905 0.838 0.459 1e-115
116788113557 unknown [Picea sitchensis] 0.954 0.906 0.443 1e-113
255554971547 Pectinesterase precursor, putative [Rici 0.967 0.936 0.439 1e-111
161019194595 pectin methylesterase-like protein [Taiw 0.926 0.823 0.428 1e-109
224286557601 unknown [Picea sitchensis] 0.926 0.815 0.428 1e-108
>gi|255550291|ref|XP_002516196.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223544682|gb|EEF46198.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/531 (68%), Positives = 425/531 (80%), Gaps = 18/531 (3%)

Query: 9   IILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSAL 68
            ++ WLL ++++  +M  N    +IQ+ECSFTR+P LC+QTL G         +H++SAL
Sbjct: 4   FMIFWLLGSALAASSMDENL---QIQEECSFTRYPSLCLQTLRGL----RDDSVHIVSAL 56

Query: 69  VNKSIAETKLPTSYFSNFSSQLLAKDFQ------DHCEEMMSMSLKRLEKSLLALQNSPT 122
           VNKSI+ETKLP S+F++ +SQL  ++ Q      D+CE +M MSLK L+KSLLAL+ SP 
Sbjct: 57  VNKSISETKLPVSFFTSLTSQLGIQEAQYTQSTTDYCENLMKMSLKLLDKSLLALKQSPE 116

Query: 123 KNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRI 182
           KNK+DIQTWL AALT+QQ CKDSV+SLGL     +  +IS+KMDYLS+L SNPLALVNRI
Sbjct: 117 KNKNDIQTWLSAALTYQQACKDSVDSLGLPT-GGLTSQISRKMDYLSELVSNPLALVNRI 175

Query: 183 A---RASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVS 239
                    KNST +R L EE  DFP WVSAK+RKLLQ+  I AN +VA+DGTGNY TVS
Sbjct: 176 TGDHDNKLKKNSTRSRYLGEEIQDFPKWVSAKDRKLLQSSTIKANAVVAKDGTGNYETVS 235

Query: 240 EAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATAT 299
           EAI AA G RFVIYVKAGVYKEKIRTNKDGITLIG+GKY+TII GDD+   G+SMP +AT
Sbjct: 236 EAIKAAGGGRFVIYVKAGVYKEKIRTNKDGITLIGEGKYSTIIVGDDSVGDGSSMPGSAT 295

Query: 300 FTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYR 359
           FTITGDGFIARDIGF N AGPQGEQALAL +ASDH+V YRCSIAGYQDTLYAL+ RQFYR
Sbjct: 296 FTITGDGFIARDIGFQNAAGPQGEQALALYIASDHSVLYRCSIAGYQDTLYALSQRQFYR 355

Query: 360 DTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KGSYNAITANGRTDPGQNTGFSLQNCKIAA 418
           + DIYGTIDFIFGNAAAVFQNCYLVLRRP  GSYN I ANGR+DPGQNTGFS+QNC+I A
Sbjct: 356 ECDIYGTIDFIFGNAAAVFQNCYLVLRRPDHGSYNVILANGRSDPGQNTGFSVQNCRITA 415

Query: 419 GSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYANTLYFAEYA 478
            SD++PVKH YNSYLGRPWKQYSR+++M+S IDD+IS  GW+EWPGAG Y+ +LYFAEY+
Sbjct: 416 SSDFSPVKHSYNSYLGRPWKQYSRSIIMESYIDDAISWKGWIEWPGAGSYSKSLYFAEYS 475

Query: 479 NVGPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL 529
           N GPGA TS R  WPGFHVIG + AVKFTV  FI+G+SWLPSTGV F  GL
Sbjct: 476 NTGPGAGTSKRPNWPGFHVIGAEEAVKFTVGKFISGSSWLPSTGVTFISGL 526

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484245|ref|XP_002277293.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 54-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356532840|ref|XP_003534978.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 54-like [Glycine max] Back     alignment and taxonomy information
>gi|297812269|ref|XP_002874018.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319855|gb|EFH50277.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242077|ref|NP_197586.1| Putative pectinesterase/pectinesterase inhibitor 54 [Arabidopsis thaliana] gi|122214307|sp|Q3E989.1|PME54_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 54; Includes: RecName: Full=Pectinesterase inhibitor 54; AltName: Full=Pectin methylesterase inhibitor 54; Includes: RecName: Full=Pectinesterase 54; Short=PE 54; AltName: Full=Pectin methylesterase 54; Short=AtPME54; Flags: Precursor gi|332005515|gb|AED92898.1| Putative pectinesterase/pectinesterase inhibitor 54 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116788449|gb|ABK24883.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|116788113|gb|ABK24761.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|255554971|ref|XP_002518523.1| Pectinesterase precursor, putative [Ricinus communis] gi|223542368|gb|EEF43910.1| Pectinesterase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|161019194|gb|ABQ42392.1| pectin methylesterase-like protein [Taiwania cryptomerioides] Back     alignment and taxonomy information
>gi|224286557|gb|ACN40984.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query529
TAIR|locus:2147097512 AT5G20860 [Arabidopsis thalian 0.463 0.478 0.602 5.3e-117
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.731 0.757 0.493 8.7e-95
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.930 0.822 0.409 4.8e-94
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.935 0.843 0.409 1e-93
TAIR|locus:2077710529 PME61 "pectin methylesterase 6 0.812 0.812 0.454 3.9e-92
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.790 0.750 0.463 5e-92
TAIR|locus:2153112536 AT5G51490 [Arabidopsis thalian 0.907 0.895 0.412 4.6e-89
TAIR|locus:2153127540 AT5G51500 [Arabidopsis thalian 0.954 0.935 0.401 4.6e-89
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.676 0.604 0.459 1e-88
TAIR|locus:2053728518 ATPMEPCRD [Arabidopsis thalian 0.833 0.851 0.431 2e-88
TAIR|locus:2147097 AT5G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 779 (279.3 bits), Expect = 5.3e-117, Sum P(2) = 5.3e-117
 Identities = 150/249 (60%), Positives = 180/249 (72%)

Query:   264 RTNKDGITLI-GDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQG 322
             RT  + +T   G+GK  T+I GDD+A  GTS+P TAT T+TGDGFIARDIG  N AGP+G
Sbjct:   241 RTVMEAVTAAHGNGKDLTVIVGDDSATGGTSVPDTATMTVTGDGFIARDIGIKNIAGPRG 300

Query:   323 EQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCY 382
              QA+AL++ SD +V YRCSI+GYQDTLYA ALRQFYR+ DIYGTIDFIFGNAAAVFQ+C 
Sbjct:   301 HQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCN 360

Query:   383 LVLRRPKG--SYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQY 440
             + LRRP G  +YN I ANGRTD  QNTGF+L +C+I   SD +PVKHKY+SYLGRPW++Y
Sbjct:   361 IFLRRPHGVKAYNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKY 420

Query:   441 SRAVVMQXXXXXXXXXXGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFHVIG 499
             SRA+VM+          GW  W  +G     TLYF E+ N GP A  S RV W GFH IG
Sbjct:   421 SRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSIG 480

Query:   500 PDVAVKFTV 508
              + A  F+V
Sbjct:   481 FEEANYFSV 489
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077710 PME61 "pectin methylesterase 61" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153112 AT5G51490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153127 AT5G51500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053728 ATPMEPCRD [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3E989PME54_ARATH3, ., 1, ., 1, ., 1, 10.48750.87520.9042yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-160
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-157
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-149
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-148
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-141
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-141
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-135
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-135
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-135
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-134
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-129
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-125
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-124
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-122
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-121
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-121
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-118
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-116
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-115
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-100
PLN02197588 PLN02197, PLN02197, pectinesterase 2e-80
PLN02432293 PLN02432, PLN02432, putative pectinesterase 3e-58
PLN02497331 PLN02497, PLN02497, probable pectinesterase 5e-56
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-53
PLN02773317 PLN02773, PLN02773, pectinesterase 2e-52
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 9e-52
PLN02671359 PLN02671, PLN02671, pectinesterase 5e-49
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-47
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-45
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 3e-43
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-36
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 7e-32
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 1e-23
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 3e-21
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 8e-15
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 2e-13
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  705 bits (1821), Expect = 0.0
 Identities = 318/529 (60%), Positives = 373/529 (70%), Gaps = 44/529 (8%)

Query: 9   IILLWLLSASMSWGAMHSNNYQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSAL 68
           +++ W+L AS          YQN++Q+ECSFT++P LCVQTL G         + ++S L
Sbjct: 4   MVIFWVLGASS---RNMPFAYQNEVQRECSFTKYPSLCVQTLRGLRHDG----VDIVSVL 56

Query: 69  VNKSIAETKLPTSYFSNFSSQLLAKDFQ------DHCEEMMSMSLKRLEKSLLALQNSPT 122
           VNK+I+ET LP S     S QL  ++        D CE +M MSLKRL +SLLAL+ S  
Sbjct: 57  VNKTISETNLPLSSSMGSSYQLSLEEATYTPSVSDSCERLMKMSLKRLRQSLLALKGSSR 116

Query: 123 KNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRI 182
           KNK DIQTWL AALTFQQ CKDS+           I +ISQKMD+LS+L SN LALVNRI
Sbjct: 117 KNKHDIQTWLSAALTFQQACKDSIVDSTGYSGTSAISQISQKMDHLSRLVSNSLALVNRI 176

Query: 183 ARASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAI 242
                PK  T +R L EEQ  FP WVSA +RKLLQ   I AN +VA+DGTGNY TVSEAI
Sbjct: 177 TPN--PKPKTKSRGLSEEQ-VFPRWVSAGDRKLLQGRTIKANAVVAKDGTGNYETVSEAI 233

Query: 243 SAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTI 302
           +AA GN                           GKY+T+I GDD+   GTS+P TATFTI
Sbjct: 234 TAAHGNH--------------------------GKYSTVIVGDDSVTGGTSVPDTATFTI 267

Query: 303 TGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTD 362
           TGDGFIARDIGF N AGP+GEQA+AL++ SDH+V YRCSIAGYQDTLYA ALRQFYR+ D
Sbjct: 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECD 327

Query: 363 IYGTIDFIFGNAAAVFQNCYLVLRRPKG-SYNAITANGRTDPGQNTGFSLQNCKIAAGSD 421
           IYGTIDFIFGNAAAVFQNCYL LRRP G SYN I ANGR+DPGQNTGFSLQ+C+I   SD
Sbjct: 328 IYGTIDFIFGNAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSD 387

Query: 422 YAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYA-NTLYFAEYANV 480
           ++PVKH Y+SYLGRPWK+YSRA+VM+S IDD+I+  GW+EWPG+G     +LYFAEY+N 
Sbjct: 388 FSPVKHSYSSYLGRPWKKYSRAIVMESYIDDAIAERGWIEWPGSGSEVLKSLYFAEYSNY 447

Query: 481 GPGAATSNRVKWPGFHVIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL 529
           GPGA TS RV WPGFH+IG + A KFTV  FIAG SWLPSTGV F  GL
Sbjct: 448 GPGARTSKRVTWPGFHLIGFEEATKFTVVKFIAGESWLPSTGVKFISGL 496

Length = 497
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 529
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.95
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.94
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.92
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.49
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.92
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.77
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.31
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.29
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.23
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.64
PLN02793443 Probable polygalacturonase 97.4
PLN03003456 Probable polygalacturonase At3g15720 97.34
PLN02218431 polygalacturonase ADPG 97.16
PLN02682369 pectinesterase family protein 97.14
PRK10531422 acyl-CoA thioesterase; Provisional 96.85
PLN03010409 polygalacturonase 96.84
PLN02773317 pectinesterase 96.8
KOG1777 625 consensus Putative Zn-finger protein [General func 96.78
PLN02176340 putative pectinesterase 96.76
PLN02480343 Probable pectinesterase 96.75
PLN02497331 probable pectinesterase 96.73
PLN02155394 polygalacturonase 96.72
PLN02634359 probable pectinesterase 96.64
PLN02432293 putative pectinesterase 96.54
PLN02665366 pectinesterase family protein 96.48
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.44
PLN02671359 pectinesterase 96.23
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.07
PLN02304379 probable pectinesterase 95.96
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.92
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.87
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.84
PLN02197588 pectinesterase 95.83
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.82
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.79
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.7
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.56
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.48
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.46
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.43
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.41
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.34
smart00656190 Amb_all Amb_all domain. 95.32
PLN02916502 pectinesterase family protein 95.32
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.28
PLN02301548 pectinesterase/pectinesterase inhibitor 95.05
PLN02314586 pectinesterase 95.02
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.97
PLN02313587 Pectinesterase/pectinesterase inhibitor 94.89
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 94.85
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 94.68
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 94.59
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.44
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.69
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 93.48
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 93.4
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 93.24
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.22
smart00722146 CASH Domain present in carbohydrate binding protei 93.13
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 93.07
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 90.64
PLN02188404 polygalacturonase/glycoside hydrolase family prote 90.56
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 90.12
PLN02218431 polygalacturonase ADPG 84.46
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 83.89
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 83.16
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 82.48
PLN02793443 Probable polygalacturonase 82.44
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=4.1e-130  Score=1064.80  Aligned_cols=496  Identities=45%  Similarity=0.762  Sum_probs=450.3

Q ss_pred             hhhHHHhhcCCCCChhcHHHhhccCCCCCCCCHHHHHHHHHHHHHHHhhchhHHHHHhhh-ccc--hHHHHHHHHHHHHH
Q 009682           29 YQNKIQKECSFTRFPILCVQTLMGFESTKHQQHIHLMSALVNKSIAETKLPTSYFSNFSS-QLL--AKDFQDHCEEMMSM  105 (529)
Q Consensus        29 ~~~~I~~~C~~T~yp~lC~~sL~~~~~s~~~d~~~L~~~ai~~a~~~a~~a~~~i~~l~~-~~~--~~~aL~dC~e~y~~  105 (529)
                      .+..|+++|+.|+||++|+++|.+.|.+..++|++|+++++++++.++.++......+.. +++  .+.||+||+|+|++
T Consensus        72 ~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~~~~~~r~k~AL~DClELldd  151 (587)
T PLN02484         72 PTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISYVQMPPRVRSAYDSCLELLDD  151 (587)
T ss_pred             hhHHHHHhccCCCChHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHH
Confidence            456999999999999999999999998777899999999999999999988766554432 333  89999999999999


Q ss_pred             HHHHHHHHHHHhhcC-CCCChhHHHHHHHHHHhhHhHHHHhhhcCCCCcchhhHhHHHHhHHHHHHHhhhhhHHhhhhhc
Q 009682          106 SLKRLEKSLLALQNS-PTKNKDDIQTWLGAALTFQQTCKDSVNSLGLSERNEVIKKISQKMDYLSQLTSNPLALVNRIAR  184 (529)
Q Consensus       106 av~~L~~s~~~l~~~-~~~~~~d~~twLSAAlt~~~TC~Dgf~e~G~~~~~~~~~~l~~~~~~~~~l~snaLAi~~~l~~  184 (529)
                      ++++|++|+.+|... ....++|++|||||||||++||+|||++.  +. ++++++|.+.+.++.||+||||||++.+..
T Consensus       152 Aid~L~~Sl~~l~~~~~~~~~~DvkTWLSAALTnq~TClDGF~e~--~~-~~vk~~m~~~l~~l~~LtSNALAIi~~~~~  228 (587)
T PLN02484        152 SVDALSRALSSVVPSSGGGSPQDVVTWLSAALTNHDTCTEGFDGV--NG-GEVKDQMTGALKDLSELVSNCLAIFSASNG  228 (587)
T ss_pred             HHHHHHHHHHHHhccccccchHHHHhHHHHHhccHhhHHHHhhcc--cc-cchHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            999999999999851 13568999999999999999999999854  21 268999999999999999999999999876


Q ss_pred             cCCCC-CCCCCCCCCcc--cCCCCCcccccccccccCCC--CCceEEEcCCCCCCcccHHHHHHHcc---CCceEEEEeC
Q 009682          185 ASYPK-NSTYNRRLDEE--QGDFPNWVSAKNRKLLQAPR--INANVIVAQDGTGNYRTVSEAISAAS---GNRFVIYVKA  256 (529)
Q Consensus       185 ~~~~~-~~~~~r~l~~~--~~~~p~w~~~~~~~~~~~~~--~~~~~~V~~~g~g~f~TIq~Ai~aa~---~~~~~I~I~~  256 (529)
                      ..+.. +.+.+|+|+++  .++||.|++..|||||+.+.  ++++++|++||+|+|+|||+||+++|   ..|++|+|+|
T Consensus       229 ~~~~~~~~~~~r~l~~~~~~~~~P~W~~~~dr~ll~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~  308 (587)
T PLN02484        229 GDFSGVPIQNRRRLLTEEEDISFPRWLGRRERELLGMPVSAIQADIIVSKDGNGTFKTISEAIKKAPEHSSRRTIIYVKA  308 (587)
T ss_pred             ccccccccccccccccccccccCCCCcChhhHHHhhcccccCCceEEECCCCCCCcccHHHHHHhccccCCCcEEEEEeC
Confidence            32222 11346888874  46999999999999998865  78999999999999999999999999   4689999999


Q ss_pred             ceEEe-eee--ecCCCeEEEecCCCceEEecccCCCCCCCCCCceeEEEEcCcEEEEeEEEEcCCCCCCCcceeeeecCC
Q 009682          257 GVYKE-KIR--TNKDGITLIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASD  333 (529)
Q Consensus       257 G~Y~E-~v~--~~k~~itl~G~g~~~tiI~~~~~~~~g~~t~~sat~~v~a~~~~~~~lti~Ns~~~~~~qAvAl~~~~d  333 (529)
                      |+|+| +|.  .+|+||+|+|+|.++|||+++++..++++|+++|||.|.+++|+++||||+|++|+.++|||||++.+|
T Consensus       309 G~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D  388 (587)
T PLN02484        309 GRYEENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGAD  388 (587)
T ss_pred             CEEEEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCC
Confidence            99999 487  588999999999999999999988888899999999999999999999999999998999999999999


Q ss_pred             ceEEEEeEEeeccceeeccccceeeeecEEecccceEeCCCceeEEeeEEEEecCC-CCcceEEecCCCCCCCceeEEEE
Q 009682          334 HTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPK-GSYNAITANGRTDPGQNTGFSLQ  412 (529)
Q Consensus       334 ~~~~~~c~~~g~qdTl~~~~~r~~~~~c~I~G~vDfIfG~~~a~f~~c~i~~~~~~-~~~~~itA~~r~~~~~~~G~vf~  412 (529)
                      +++||||+|+|||||||++.+||||++|+|+|+||||||+|+++||+|+|+++++. ++.|+||||+|+++++.+||||+
T Consensus       389 ~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~  468 (587)
T PLN02484        389 HAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIH  468 (587)
T ss_pred             cEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEE
Confidence            99999999999999999999999999999999999999999999999999999875 56799999999999999999999


Q ss_pred             cCEEeecCCCCCccCcccEEeeccccCCCceEEEecCCCCcccCCCCccCCCCCCCC-cceEEEEeeccCCCCCCCCccc
Q 009682          413 NCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSISSSGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVK  491 (529)
Q Consensus       413 ~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~~i~p~Gw~~w~~~~~~~-~~~~f~Ey~n~G~g~~~~~R~~  491 (529)
                      ||+|++++++.+.....++||||||++|+|||||+|+|+++|+|+||.+|  ++.++ ++++|+||+|+|||+++++||+
T Consensus       469 ~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~I~p~GW~~W--~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~  546 (587)
T PLN02484        469 ACRILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDHIHPRGWLEW--NTTFALDTLYYGEYMNYGPGSGVGQRVK  546 (587)
T ss_pred             eeEEecCCccccccCccceeccCCCCCCceEEEEecccCCeEcccccCCC--CCCCCCCceEEEEeccccCCCCcCCCcc
Confidence            99999998876655566799999999999999999999999999999999  77777 9999999999999999999999


Q ss_pred             CCCcccC-CHHHHhcchhhccccCCCCCCCCCCCCCCCC
Q 009682          492 WPGFHVI-GPDVAVKFTVANFIAGTSWLPSTGVIFDGGL  529 (529)
Q Consensus       492 w~~~~~l-~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~  529 (529)
                      |++++++ +++||.+|+..+||+|++|+|.++|||+.||
T Consensus       547 w~~~~~~~~~~ea~~ft~~~fi~g~~W~~~~~vp~~~gl  585 (587)
T PLN02484        547 WPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVSFLAGL  585 (587)
T ss_pred             CccccccCCHHHHHhhhHHhhcCCCCcCCCCCCCcccCC
Confidence            9998765 7889999999999999999999999999997

>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 2e-87
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 3e-79
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 6e-20
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 2e-19
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 2e-18
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 2e-13
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  319 bits (818), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/317 (53%), Positives = 208/317 (65%), Gaps = 10/317 (3%)
Query: 221 INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIR--TNKDGITLIGD 275
           I AN +VAQDGTG+Y+T++EA++AA   S  R+VIYVK G YKE +   +NK  + ++GD
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60
Query: 276 GKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHT 335
           G Y T ITG  N   G++   +AT    G GFI +DI   NTAGP  +QA+AL V +D +
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120
Query: 336 VFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRPKGSY--N 393
           V  RC I  YQDTLYA + RQFYRD+ + GT+DFIFGNAA VFQ C LV R+P G Y  N
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKP-GKYQQN 179
Query: 394 AITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQXXXXXX 453
            +TA GRTDP Q TG S+Q C I A SD  PV  ++ +YLGRPWK+YSR VVM+      
Sbjct: 180 MVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGL 239
Query: 454 XXXXGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFI 512
               GW EW G      TLY+ E+ N GPGA TS RVKWPG+HVI  P  A+ FTVA  I
Sbjct: 240 INPAGWAEWDGDFAL-KTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLI 298
Query: 513 AGTSWLPSTGVIFDGGL 529
            G SWL STGV +  GL
Sbjct: 299 QGGSWLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query529
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-153
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-152
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-119
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-118
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-92
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 2e-25
1x91_A153 Invertase/pectin methylesterase inhibitor family p 1e-23
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  439 bits (1130), Expect = e-153
 Identities = 171/316 (54%), Positives = 212/316 (67%), Gaps = 8/316 (2%)

Query: 221 INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIR--TNKDGITLIGD 275
           I AN +VAQDGTG+Y+T++EA++AA   S  R+VIYVK G YKE +   +NK  + ++GD
Sbjct: 1   IIANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGD 60

Query: 276 GKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHT 335
           G Y T ITG  N   G++   +AT    G GFI +DI   NTAGP  +QA+AL V +D +
Sbjct: 61  GMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS 120

Query: 336 VFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KGSYNA 394
           V  RC I  YQDTLYA + RQFYRD+ + GT+DFIFGNAA VFQ C LV R+P K   N 
Sbjct: 121 VINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNM 180

Query: 395 ITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSI 454
           +TA GRTDP Q TG S+Q C I A SD  PV  ++ +YLGRPWK+YSR VVM+S +   I
Sbjct: 181 VTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLI 240

Query: 455 SSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFIA 513
           + +GW EW G      TLY+ E+ N GPGA TS RVKWPG+HVI  P  A+ FTVA  I 
Sbjct: 241 NPAGWAEWDGDFAL-KTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQ 299

Query: 514 GTSWLPSTGVIFDGGL 529
           G SWL STGV +  GL
Sbjct: 300 GGSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query529
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.96
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.63
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.45
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.17
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.36
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.9
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.85
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.66
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.62
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.57
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.56
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.46
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.44
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.42
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.41
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.36
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.2
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.07
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.01
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.95
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.82
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.8
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 96.8
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.72
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.72
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.57
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.43
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.39
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.1
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.07
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 95.92
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.84
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.75
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.73
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.63
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.61
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.05
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.96
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.93
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 90.85
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 89.59
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 88.6
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 87.8
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 87.24
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 86.93
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 86.34
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 82.72
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 81.76
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 80.13
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=2.3e-88  Score=693.70  Aligned_cols=307  Identities=53%  Similarity=0.911  Sum_probs=289.3

Q ss_pred             CCceEEEcCCCCCCcccHHHHHHHcc---CCceEEEEeCceEEeeeeec--CCCeEEEecCCCceEEecccCCCCCCCCC
Q 009682          221 INANVIVAQDGTGNYRTVSEAISAAS---GNRFVIYVKAGVYKEKIRTN--KDGITLIGDGKYTTIITGDDNARRGTSMP  295 (529)
Q Consensus       221 ~~~~~~V~~~g~g~f~TIq~Ai~aa~---~~~~~I~I~~G~Y~E~v~~~--k~~itl~G~g~~~tiI~~~~~~~~g~~t~  295 (529)
                      ..++++|+++|+|+|+|||+||++||   ..|++|+|+||+|+|+|.|.  |++|||+|+|.++|+|+++.+..++++|+
T Consensus         5 ~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~   84 (319)
T 1gq8_A            5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF   84 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTG
T ss_pred             ccceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccccCCCCcc
Confidence            56899999999999999999999999   45689999999999999976  88999999999999999999888889999


Q ss_pred             CceeEEEEcCcEEEEeEEEEcCCCCCCCcceeeeecCCceEEEEeEEeeccceeeccccceeeeecEEecccceEeCCCc
Q 009682          296 ATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAA  375 (529)
Q Consensus       296 ~sat~~v~a~~~~~~~lti~Ns~~~~~~qAvAl~~~~d~~~~~~c~~~g~qdTl~~~~~r~~~~~c~I~G~vDfIfG~~~  375 (529)
                      +++||.|.+++|+++||||+|++++.++||+||++.+|++.|+||+|+|+|||||++.+||||++|+|+|+||||||+++
T Consensus        85 ~satv~v~a~~f~~~nlt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~  164 (319)
T 1gq8_A           85 NSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAA  164 (319)
T ss_dssp             GGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCE
T ss_pred             ceEEEEEECCCEEEEEeEeEccCCCcCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEEEeeeeEEecCCc
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeeEEEEecCC-CCcceEEecCCCCCCCceeEEEEcCEEeecCCCCCccCcccEEeeccccCCCceEEEecCCCCcc
Q 009682          376 AVFQNCYLVLRRPK-GSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDDSI  454 (529)
Q Consensus       376 a~f~~c~i~~~~~~-~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~~i  454 (529)
                      ++||+|+|+++++. ++.++||||+|+++.+++||||+||+|++++++.++....++||||||++|+||||++|+|+++|
T Consensus       165 a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I  244 (319)
T 1gq8_A          165 VVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVI  244 (319)
T ss_dssp             EEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTB
T ss_pred             EEEEeeEEEEecCCCCCceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcceEEEEeccCCCcc
Confidence            99999999999765 56789999999999999999999999999987655444457999999999999999999999999


Q ss_pred             cCCCCccCCCCCCCC-cceEEEEeeccCCCCCCCCcccCCCcccC-CHHHHhcchhhccccCCCCCCCCCCCCCCCC
Q 009682          455 SSSGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVANFIAGTSWLPSTGVIFDGGL  529 (529)
Q Consensus       455 ~p~Gw~~w~~~~~~~-~~~~f~Ey~n~G~g~~~~~R~~w~~~~~l-~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~  529 (529)
                      +|+||.+|  +++++ ++++|+||+|+|||+++++||+|+++++| +++||++|+..+||+|++|+|.++|||..||
T Consensus       245 ~p~GW~~w--~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  319 (319)
T 1gq8_A          245 NPAGWFPW--DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             CTTCCCCS--STTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccCcC--CCCCCCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCCCCccccCCC
Confidence            99999999  77777 89999999999999999999999998877 5789999999999999889999999999997
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 529
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-130
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-87
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 7e-22
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 1e-17
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 1e-04
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 0.001
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  380 bits (976), Expect = e-130
 Identities = 162/320 (50%), Positives = 206/320 (64%), Gaps = 8/320 (2%)

Query: 217 QAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKDG--IT 271
           ++  +  NV+VA DG+G+Y+TVSEA++AA   S  R+VI +KAGVY+E +   K    I 
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 272 LIGDGKYTTIITGDDNARRGTSMPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVA 331
            +GDG+ +TIIT   N + G++   +AT    G GF+ARDI F NTAG    QA+AL V 
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 332 SDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGNAAAVFQNCYLVLRRP-KG 390
           SD + FYRC I  YQD+LY  + RQF+ +  I GT+DFIFGNAA V Q+C +  RRP  G
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180

Query: 391 SYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSI 450
             N +TA GRTDP QNTG  +Q  +I A SD  PV+  + +YLGRPWK+YSR VVMQSSI
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 451 DDSISSSGWVEWPGAGGYANTLYFAEYANVGPGAATSNRVKWPGFHVI-GPDVAVKFTVA 509
            + I+ +GW  W G     +TLY+ EY N G GAATS RV W GF VI     A  FT  
Sbjct: 241 TNVINPAGWFPWDGNFAL-DTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPG 299

Query: 510 NFIAGTSWLPSTGVIFDGGL 529
           +FIAG SWL +T   F  GL
Sbjct: 300 SFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query529
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.95
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.94
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.11
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.69
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.09
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.7
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.47
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 97.34
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.24
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.09
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.06
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.9
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.78
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.14
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.81
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.65
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.62
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.48
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.2
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.32
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 90.32
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 88.14
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 87.36
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 87.24
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 83.12
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=5.3e-92  Score=715.01  Aligned_cols=309  Identities=52%  Similarity=0.902  Sum_probs=292.0

Q ss_pred             CCCCceEEEcCCCCCCcccHHHHHHHcc---CCceEEEEeCceEEeeeee--cCCCeEEEecCCCceEEecccCCCCCCC
Q 009682          219 PRINANVIVAQDGTGNYRTVSEAISAAS---GNRFVIYVKAGVYKEKIRT--NKDGITLIGDGKYTTIITGDDNARRGTS  293 (529)
Q Consensus       219 ~~~~~~~~V~~~g~g~f~TIq~Ai~aa~---~~~~~I~I~~G~Y~E~v~~--~k~~itl~G~g~~~tiI~~~~~~~~g~~  293 (529)
                      ....++++|++||+|+|+|||+|||++|   ..+++|+|+||+|+|+|.|  +||+|||+|+|++.|+|+++.+..++.+
T Consensus         3 ~~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~   82 (319)
T d1gq8a_           3 STVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGST   82 (319)
T ss_dssp             CSSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             CcCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCc
Confidence            3467999999999999999999999999   5678999999999999995  8899999999999999999999888889


Q ss_pred             CCCceeEEEEcCcEEEEeEEEEcCCCCCCCcceeeeecCCceEEEEeEEeeccceeeccccceeeeecEEecccceEeCC
Q 009682          294 MPATATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFIFGN  373 (529)
Q Consensus       294 t~~sat~~v~a~~~~~~~lti~Ns~~~~~~qAvAl~~~~d~~~~~~c~~~g~qdTl~~~~~r~~~~~c~I~G~vDfIfG~  373 (529)
                      |+.++||.|.+++|+++||||+|++++.++|||||++.+||+.|++|+|+|+|||||++.+||||++|+|+|+||||||+
T Consensus        83 t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~  162 (319)
T d1gq8a_          83 TFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGN  162 (319)
T ss_dssp             TGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEES
T ss_pred             cccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecC
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEeeEEEEecCC-CCcceEEecCCCCCCCceeEEEEcCEEeecCCCCCccCcccEEeeccccCCCceEEEecCCCC
Q 009682          374 AAAVFQNCYLVLRRPK-GSYNAITANGRTDPGQNTGFSLQNCKIAAGSDYAPVKHKYNSYLGRPWKQYSRAVVMQSSIDD  452 (529)
Q Consensus       374 ~~a~f~~c~i~~~~~~-~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~~~~v~~~t~~~~  452 (529)
                      ++++||+|+|+++.+. ++.++||||+|+++.+++||||+||+|+++++..+.....++||||||++++||||++|+|++
T Consensus       163 ~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~  242 (319)
T d1gq8a_         163 AAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITN  242 (319)
T ss_dssp             CEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECT
T ss_pred             ceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEeccccc
Confidence            9999999999998765 667899999999999999999999999999887665556789999999999999999999999


Q ss_pred             cccCCCCccCCCCCCCC-cceEEEEeeccCCCCCCCCcccCCCcc-cCCHHHHhcchhhccccCCCCCCCCCCCCCCCC
Q 009682          453 SISSSGWVEWPGAGGYA-NTLYFAEYANVGPGAATSNRVKWPGFH-VIGPDVAVKFTVANFIAGTSWLPSTGVIFDGGL  529 (529)
Q Consensus       453 ~i~p~Gw~~w~~~~~~~-~~~~f~Ey~n~G~g~~~~~R~~w~~~~-~l~~~~a~~~t~~~~~~g~~W~p~~~~~~~~~~  529 (529)
                      +|.|+||.+|  +++.. ++++|+||+|+|||+++++||+|++++ +|+++||++|+.++||+|++|+|.++|||..||
T Consensus       243 ~I~p~GW~~w--~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         243 VINPAGWFPW--DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TBCTTCCCCS--STTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccc--CCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999  77766 899999999999999999999999865 569999999999999999889999999999998
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure