Citrus Sinensis ID: 009686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------53
Protein Sequence
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEcEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccHHHHEEHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEccccccccccccccccccccccEEEEEEccEEEEEEccccccccccccccccccccccccccccHHccccccccHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccHHHEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHcccc
Coil and Loop (DISEMBL)
mnftttfrgnlsllphcssccdirfqpilaslhvtrpvrcrlgnfssykvsrKKRELICRVtdtqtepdsnndkekevhdgqenqpatasdqeddksqpdsqldsqpqvenqingndvadtkggvqddgngevasgsplpgvkpqqldeyiripkETIDILkdqvfgfdtffvtnqepyeggvlfkgnlrgqAAKTYEKISTRMKNKFGDQYKLFLLvnpeddkpvavvvprktlqpettavpewfaaGAFGLVTVFTLLLRNVPALQSNLlstfdnlnlltnglpGALVTALVIGVHELGHILAAKStgvelgvpyfvpswqigsfgaITRIRNIVSKREDLLKVaaagplagfSLGFVLFLVGfifppsdgigivVDASVFHESFLAGGFAKLLLgdvlkdgtpisvnPLVIWAWAGLLINAinsipageldggRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLqrgpiaplseeitdpddkyIALGVLVLFLGLLvclpypfpfsdqavsnf
Flexible Loop (DISEMBL)
mnftttfrgnlsllPHCSSCCDIRFQPILASLhvtrpvrcrlgnfssykvsrkkrelicrvtdtqtepdsnndkekevhdgqenqpatasdqeddksQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGevasgsplpgvkpqqLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPyeggvlfkgnlrgQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPfpfsdqavsnf
Low Complexity Region (SEG)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEddksqpdsqldsqpqVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAgfslgfvlflvgfifPPSDGIGIVVDASVFHESflaggfaklllgDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTgvsivllglsslfsDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAlgvlvlflgllvclPYPFPFSDQAVSNF
Disordered region (IsUnstruct)
****TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRV*************************************************************************************LDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPF********
Disordered Region (DISOPRED)
***TTTFRGNLSLLPHCSSCCDIRFQPIL*SLHVTR***************************************************************************************************************************ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVV*R********AVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSN*
Disordered Region (DISEMBL)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTDT********************************************VENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Disordered Region (DISPRO)
*********NLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTD*******************************************************************************KPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQ*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	528
255571887	525	metalloendopeptidase, putative [Ricinus	0.984	0.990	0.741	0.0
359486422	543	PREDICTED: uncharacterized protein LOC10	0.988	0.961	0.728	0.0
334187443	524	ethylene-dependent gravitropism-deficien	0.956	0.963	0.687	0.0
42573279	527	ethylene-dependent gravitropism-deficien	0.971	0.973	0.692	0.0
297810677	558	peptidase M50 family protein [Arabidopsi	0.971	0.919	0.666	0.0
15239226	556	ethylene-dependent gravitropism-deficien	0.971	0.922	0.655	0.0
356501144	523	PREDICTED: uncharacterized protein LOC10	0.964	0.973	0.707	0.0
356551482	520	PREDICTED: uncharacterized protein LOC10	0.960	0.975	0.701	0.0
242052155	545	hypothetical protein SORBIDRAFT_03g00653	0.899	0.871	0.659	0.0
218187492	545	hypothetical protein OsI_00340 [Oryza sa	0.958	0.928	0.641	0.0

>gi|255571887|ref|XP_002526886.1| metalloendopeptidase, putative [Ricinus communis] gi|223533785|gb|EEF35517.1| metalloendopeptidase, putative [Ricinus communis]

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/533 (74%), Positives = 449/533 (84%), Gaps = 13/533 (2%)

Query: 1   MNFTTTFRGNLS--LLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSR--KKRE 56
           M+    FRGN +  LLP  S C          S+   R +RCRL +F  Y VSR  +KR 
Sbjct: 1   MSLIAAFRGNFTPLLLPLSSHCSSCT---SSVSVTSQRKLRCRLRDFKLYHVSRFVEKRV 57

Query: 57  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 116
           ++CRVT+T+TEPD NNDKEKEVH+G E  P T S       Q  S+ DSQP+V NQI+ N
Sbjct: 58  IVCRVTETETEPDGNNDKEKEVHEGGETPPTTGS-----AGQVSSESDSQPRVVNQISNN 112

Query: 117 D-VADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTN 175
           D   +++   QD     VASGSPLPGVK QQLDE  RIPK TIDILKDQVFGFDTFFVT+
Sbjct: 113 DEQTNSESSTQDADAENVASGSPLPGVKTQQLDESFRIPKGTIDILKDQVFGFDTFFVTS 172

Query: 176 QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTL 235
           QEPYEGGVLFKGNLRG+AAK+YEK++ RM+NKFGD+Y+LFLLVNPEDD+PVAVVVPRKTL
Sbjct: 173 QEPYEGGVLFKGNLRGKAAKSYEKLTNRMQNKFGDEYRLFLLVNPEDDRPVAVVVPRKTL 232

Query: 236 QPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVI 295
           QPETTAVPEWFAAGAFGLVT+FTLLLRNVPALQSNLLSTFDNL LL +GL GAL+TAL++
Sbjct: 233 QPETTAVPEWFAAGAFGLVTIFTLLLRNVPALQSNLLSTFDNLELLKDGLSGALITALIL 292

Query: 296 GVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF 355
           GVHE+GHIL AKS+ V+LGVPYFVPSWQIGSFGAITRI NIV KREDLLKVAAAGPLAGF
Sbjct: 293 GVHEVGHILVAKSSDVKLGVPYFVPSWQIGSFGAITRIVNIVPKREDLLKVAAAGPLAGF 352

Query: 356 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 415
           +LGFVLFLVGF+ PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GTPISVNPLVIW
Sbjct: 353 ALGFVLFLVGFVLPPSDGIGLVVDASVFHESFLAGGIAKLLLGDALKEGTPISVNPLVIW 412

Query: 416 AWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVL 475
           AWAG+LINAINSIPAGELDGGRI FA+WGRKAS R T VSI LLG+S+LF+DV FYWVVL
Sbjct: 413 AWAGMLINAINSIPAGELDGGRILFAIWGRKASARFTAVSIGLLGISALFNDVAFYWVVL 472

Query: 476 VFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 528
           + FLQRGPIAPLSEEITDP++KY++LG+LVL LGLLVCLPYPFPF+D+ +++F
Sbjct: 473 IAFLQRGPIAPLSEEITDPEEKYVSLGILVLLLGLLVCLPYPFPFTDEVLTSF 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486422|ref|XP_002271131.2| PREDICTED: uncharacterized protein LOC100267324 [Vitis vinifera] gi|297736633|emb|CBI25504.3| unnamed protein product [Vitis vinifera]

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/549 (72%), Positives = 456/549 (83%), Gaps = 27/549 (4%)

Query: 1   MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSR----KKRE 56
           MNF  TFRGN +   HCSSCCD+RFQP L+S  V R  RCR+ N   ++VSR    ++  
Sbjct: 1   MNFPATFRGNFNPFSHCSSCCDLRFQPFLSSPIVWRQKRCRISNLQVHQVSRLGSRRRPR 60

Query: 57  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQ---- 112
           ++C VT+T+TEP++NND+EK  H+     P+      D   Q D QLDSQP V +Q    
Sbjct: 61  IVCGVTETETEPENNNDEEK-AHENGGMPPSI-----DSTVQNDPQLDSQPLVADQDKDQ 114

Query: 113 ------INGNDVADT-------KGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETID 159
                 +NG+++ ++       +G VQD  N EVASGSPLPGVKPQ LDE IRIPKETID
Sbjct: 115 FVHNAMLNGDNMVNSDNQETEAQGNVQDSENLEVASGSPLPGVKPQVLDESIRIPKETID 174

Query: 160 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVN 219
           ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRG+AAK+YEKI+ RM+++FGD+YKLFLL+N
Sbjct: 175 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGKAAKSYEKITIRMQDRFGDKYKLFLLIN 234

Query: 220 PEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLN 279
           PEDDKPVAVVVPR TLQPETTAVPEWFAAGAFGLVTVFTL LRNVPALQSNLLS FDNLN
Sbjct: 235 PEDDKPVAVVVPRNTLQPETTAVPEWFAAGAFGLVTVFTLFLRNVPALQSNLLSVFDNLN 294

Query: 280 LLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSK 339
           LL +GLPGALVTALV+G HE+ HIL A+STG++LGVPYFVPSWQIGSFGAITRI NIV  
Sbjct: 295 LLMDGLPGALVTALVLGTHEISHILVARSTGIKLGVPYFVPSWQIGSFGAITRILNIVPN 354

Query: 340 REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGD 399
           REDLLKVAAAGP+AGFSLG VL L+GF+ PPSDGIG+VVDASVFHES LAGG AKLLLGD
Sbjct: 355 REDLLKVAAAGPIAGFSLGLVLLLLGFLLPPSDGIGVVVDASVFHESLLAGGIAKLLLGD 414

Query: 400 VLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLL 459
           VLK+GTPISVNPL+IWAWAGLLINAINSIPAGELDGGRI+FA+WGRKAS R T  SI LL
Sbjct: 415 VLKEGTPISVNPLLIWAWAGLLINAINSIPAGELDGGRISFAIWGRKASARFTAASIALL 474

Query: 460 GLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFP 519
           GLSSLF+DV FYWVVL+FFLQRGPIAPLSEEITDP+DKY+ALGV+VL LGLLVCLPYPFP
Sbjct: 475 GLSSLFNDVAFYWVVLIFFLQRGPIAPLSEEITDPEDKYVALGVVVLLLGLLVCLPYPFP 534

Query: 520 FSDQAVSNF 528
           F+++   +F
Sbjct: 535 FTNEVTVSF 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187443|ref|NP_001190232.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003536|gb|AED90919.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/531 (68%), Positives = 427/531 (80%), Gaps = 26/531 (4%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRKK----- 54
           MN    +FRGN  +L  CSSCC ++FQP +A+            NF     SR+K     
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSL--------NFGQTGTSRRKKDLKL 52

Query: 55  ---RELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 111
              RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N
Sbjct: 53  ERKRETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVN 104

Query: 112 QINGNDVADTKGGVQDDGNG-EVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDT 170
           +  GN+  +       DG+  EV+SGSPLPGV P QLD+ +R+PKETIDIL+ QVFGFDT
Sbjct: 105 EAPGNEEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDT 164

Query: 171 FFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVV 230
           FFVT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVV
Sbjct: 165 FFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVV 224

Query: 231 PRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALV 290
           PR++L+PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALV
Sbjct: 225 PRRSLEPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALV 284

Query: 291 TALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAG 350
           TALV+GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAG
Sbjct: 285 TALVLGVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAG 344

Query: 351 PLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVN 410
           PLAGFSLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+N
Sbjct: 345 PLAGFSLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLN 404

Query: 411 PLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTF 470
           PLVIWAWAGLLIN INSIPAGELDGG+IAF++WGRK +TRLTG SI LLGLS+LFSDV F
Sbjct: 405 PLVIWAWAGLLINGINSIPAGELDGGKIAFSIWGRKTATRLTGASIALLGLSALFSDVAF 464

Query: 471 YWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 521
           YWVVL+FFLQRGPIAPL+EEIT PDDKY++LG+LVLFL LLVCLPYPF F+
Sbjct: 465 YWVVLIFFLQRGPIAPLAEEITVPDDKYVSLGILVLFLSLLVCLPYPFAFT 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573279|ref|NP_974736.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003534|gb|AED90917.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/526 (69%), Positives = 428/526 (81%), Gaps = 13/526 (2%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRKKRE 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       +   +KRE
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSRRKKDLKLERVFRKRE 60

Query: 57  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 116
            + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+  GN
Sbjct: 61  TLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEAPGN 112

Query: 117 DVADTKGGVQDDGNG-EVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTN 175
           +  +       DG+  EV+SGSPLPGV P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+
Sbjct: 113 EEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFFVTS 172

Query: 176 QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTL 235
           QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L
Sbjct: 173 QEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSL 232

Query: 236 QPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVI 295
           +PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTALV+
Sbjct: 233 EPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTALVL 292

Query: 296 GVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF 355
           GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGF
Sbjct: 293 GVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGF 352

Query: 356 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 415
           SLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+NPLVIW
Sbjct: 353 SLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLNPLVIW 412

Query: 416 AWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVL 475
           AWAGLLIN INSIPAGELDGG+IAF++WGRK +TRLTG SI LLGLS+LFSDV FYWVVL
Sbjct: 413 AWAGLLINGINSIPAGELDGGKIAFSIWGRKTATRLTGASIALLGLSALFSDVAFYWVVL 472

Query: 476 VFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 521
           +FFLQRGPIAPL+EEIT PDDKY++LG+LVLFL LLVCLPYPF F+
Sbjct: 473 IFFLQRGPIAPLAEEITVPDDKYVSLGILVLFLSLLVCLPYPFAFT 518

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810677|ref|XP_002873222.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319059|gb|EFH49481.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/557 (66%), Positives = 434/557 (77%), Gaps = 44/557 (7%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHV-----TRPVRCRLGNFSSYKVSRKK 54
           MN    +FRGN  +L  CSS C ++FQP +A+        TR  R R  N    +V RK 
Sbjct: 1   MNLAVASFRGNFGVLSQCSSYCSLQFQPFVAATSSLNFGQTRTSR-RKKNLKLERVFRK- 58

Query: 55  RELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQIN 114
           RE + RVT+TQTEP+ NND++    +G+E    T++D  D  +Q  ++L+SQ  + N+  
Sbjct: 59  RETLVRVTETQTEPEGNNDEDNNGEEGKE----TSAD--DPPTQIPTELNSQSTIVNEAP 112

Query: 115 GNDVADTKGGVQDDGNG-EVASGSPLPGV-----------------------------KP 144
           GN+  +       DG+  EV+SGSPLPGV                             +P
Sbjct: 113 GNEEENKAQLSSQDGDKLEVSSGSPLPGVNVSITNNVKYKGDSLMLSIYLSFIKSCCEQP 172

Query: 145 QQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRM 204
            QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI TRM
Sbjct: 173 LQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGEPAKSYEKIKTRM 232

Query: 205 KNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNV 264
           +N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRNV
Sbjct: 233 ENNFGDQYKLFLLSNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRNV 292

Query: 265 PALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQI 324
           PALQS+LLS FDNL LL +GLPGALVT LV+GVHELGHIL A S G++LGVP+FVPSWQI
Sbjct: 293 PALQSDLLSAFDNLELLKDGLPGALVTTLVLGVHELGHILVANSLGIKLGVPFFVPSWQI 352

Query: 325 GSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFH 384
           GSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDASVFH
Sbjct: 353 GSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLLGLFVPPSDGIGVVVDASVFH 412

Query: 385 ESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG 444
           ESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGGRIAF++WG
Sbjct: 413 ESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGRIAFSIWG 472

Query: 445 RKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVL 504
           RK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++LG+L
Sbjct: 473 RKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITAPDDKYVSLGIL 532

Query: 505 VLFLGLLVCLPYPFPFS 521
           VLFL LLVCLPYPF F+
Sbjct: 533 VLFLSLLVCLPYPFAFT 549

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239226|ref|NP_196193.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|9759099|dbj|BAB09668.1| unnamed protein product [Arabidopsis thaliana] gi|332003535|gb|AED90918.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/555 (65%), Positives = 429/555 (77%), Gaps = 42/555 (7%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRKKRE 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       +   +KRE
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSRRKKDLKLERVFRKRE 60

Query: 57  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 116
            + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+  GN
Sbjct: 61  TLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEAPGN 112

Query: 117 DVADTKGGVQDDGNG-EVASGSPLPGV-----------------------------KPQQ 146
           +  +       DG+  EV+SGSPLPGV                             +P Q
Sbjct: 113 EEENKAQFSSQDGDKLEVSSGSPLPGVNVSIIIHVIYKDDSIMFSGCLSFIKSCCEQPLQ 172

Query: 147 LDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKN 206
           LD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+N
Sbjct: 173 LDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTRMEN 232

Query: 207 KFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPA 266
            FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRNVPA
Sbjct: 233 NFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRNVPA 292

Query: 267 LQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGS 326
           LQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSWQIGS
Sbjct: 293 LQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQIGS 352

Query: 327 FGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHES 386
           FGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDASVFHES
Sbjct: 353 FGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASVFHES 412

Query: 387 FLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 446
           FLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++WGRK
Sbjct: 413 FLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSIWGRK 472

Query: 447 ASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVL 506
            +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++LG+LVL
Sbjct: 473 TATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLGILVL 532

Query: 507 FLGLLVCLPYPFPFS 521
           FL LLVCLPYPF F+
Sbjct: 533 FLSLLVCLPYPFAFT 547

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501144|ref|XP_003519388.1| PREDICTED: uncharacterized protein LOC100778800 [Glycine max]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/530 (70%), Positives = 435/530 (82%), Gaps = 21/530 (3%)

Query: 5   TTFRGNLSL-LPHCSSC--CDIRFQPILASLHVTRPVRCRLGNFSSYKVSR--KKRELIC 59
           + FRGNL + L  C+SC   D+RFQ      H     RCR   F   +  R  ++R + C
Sbjct: 9   SAFRGNLLVPLSRCTSCFKLDLRFQHSDGFRHS----RCRRSLFKLIRDPRSSRRRGIAC 64

Query: 60  RVTDTQTEPDSNND-KEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDV 118
            VT    EPD+ +D KEKE     E      S ++      D++  ++   EN+   +DV
Sbjct: 65  SVT----EPDNGSDEKEKEADKNGETLRVEDSSEQSIPPPVDAEQLNEFSDENK-GQSDV 119

Query: 119 ADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEP 178
            +      DD N EVASGSPLPGVKPQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+P
Sbjct: 120 QN-----MDDSN-EVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQDP 173

Query: 179 YEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPE 238
           YEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPEDDKPVAVVVPR TLQPE
Sbjct: 174 YEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDDKPVAVVVPRTTLQPE 233

Query: 239 TTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVH 298
           TTAVPEWFAAG+FGL+TVFTLLLRNVPALQS+LLSTFDNLNLL +GLPGALVTAL++GVH
Sbjct: 234 TTAVPEWFAAGSFGLITVFTLLLRNVPALQSDLLSTFDNLNLLKDGLPGALVTALILGVH 293

Query: 299 ELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG 358
           ELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++LG
Sbjct: 294 ELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYALG 353

Query: 359 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWA 418
            +L L+GF+ PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAWA
Sbjct: 354 LLLLLLGFVLPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAWA 413

Query: 419 GLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFF 478
           GLLINAINSIPAGELDGGRI+FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+FF
Sbjct: 414 GLLINAINSIPAGELDGGRISFALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLIFF 473

Query: 479 LQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 528
           LQRGPIAPLSEEITDP +KY+A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 474 LQRGPIAPLSEEITDPGEKYVAIGVTVLLLGLLVCLPYPFPFTEETITSF 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551482|ref|XP_003544103.1| PREDICTED: uncharacterized protein LOC100816506 [Glycine max]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/529 (70%), Positives = 438/529 (82%), Gaps = 22/529 (4%)

Query: 5   TTFRGNLSL-LPHCSSCC--DIRFQPILASLHVTRPVRCRLGNFSSYKVSR--KKRELIC 59
           ++FRGNL + L  C+SC   D+R Q      H+ RP       +SS+K+ R  ++R + C
Sbjct: 9   SSFRGNLLVPLSRCTSCLELDLRIQHSEGFRHL-RP------RWSSFKLIRNPRRRVIAC 61

Query: 60  RVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVA 119
            VT+     + +++KEKE     E  P   S ++      D++  ++   EN+   +DV 
Sbjct: 62  SVTEPH---NGSDEKEKEADKNGETLPLEDSSEQSIPPPVDAEQINEFSDENK-GQSDVQ 117

Query: 120 DTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPY 179
           +      DD N EVASGSPLPGVKPQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+PY
Sbjct: 118 N-----MDDSN-EVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQDPY 171

Query: 180 EGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPET 239
           EGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPED+ PVAVVVPR TLQPET
Sbjct: 172 EGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDNMPVAVVVPRTTLQPET 231

Query: 240 TAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHE 299
           TAVPEWFAAG+FGLVTVFTLLLRNVP+LQS+LLSTFDNLNLL +GLPGALVTAL++GVHE
Sbjct: 232 TAVPEWFAAGSFGLVTVFTLLLRNVPSLQSDLLSTFDNLNLLKDGLPGALVTALILGVHE 291

Query: 300 LGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGF 359
           LGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++LG 
Sbjct: 292 LGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYALGL 351

Query: 360 VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAG 419
           +L L+GFI PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAWAG
Sbjct: 352 LLLLLGFILPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAWAG 411

Query: 420 LLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFL 479
           LLINAINSIPAGELDGGRI+FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+FFL
Sbjct: 412 LLINAINSIPAGELDGGRISFALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLIFFL 471

Query: 480 QRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 528
           QRGPIAPLSEEITDP +KY+A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 472 QRGPIAPLSEEITDPGEKYVAIGVTVLLLGLLVCLPYPFPFTEETLTSF 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052155|ref|XP_002455223.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor] gi|241927198|gb|EES00343.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/488 (65%), Positives = 396/488 (81%), Gaps = 13/488 (2%)

Query: 53  KKRELICR-VTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 111
           + R++ C+ +T+T++E D + +++KE  D   +    +  + +  ++ DS +D++     
Sbjct: 55  RSRKVACQAMTETESEGDGDKEEKKEFGDDASSPSVDSVAEANGPAESDSSIDNKKDETA 114

Query: 112 QINGNDVADTKGGVQDDGNG-----------EVASGSPLPGVKPQQLDEYIRIPKETIDI 160
                  +DT   V  D              EV SGSPLPG+K QQLD+ +RIPK TIDI
Sbjct: 115 NAELLSSSDTVQNVDGDATSTNDVQENVEVIEVVSGSPLPGMK-QQLDDSVRIPKATIDI 173

Query: 161 LKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNP 220
           LKDQVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI+ R++NKFGD+YKLFLL+NP
Sbjct: 174 LKDQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPAKSYEKITNRLQNKFGDEYKLFLLINP 233

Query: 221 EDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNL 280
           ED+KPVAVV+P++TLQPETTA+PEWFAA +FG+VT+FTLLLRNVP LQ NLLSTFDNL L
Sbjct: 234 EDEKPVAVVIPKQTLQPETTALPEWFAAASFGIVTIFTLLLRNVPVLQDNLLSTFDNLEL 293

Query: 281 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKR 340
           L +GL GALVTAL+IGVHE+GHILAA+ +G++LGVPYFVPSWQIGSFGAITRI NIV  R
Sbjct: 294 LKDGLSGALVTALIIGVHEIGHILAARESGIKLGVPYFVPSWQIGSFGAITRIVNIVRNR 353

Query: 341 EDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDV 400
           EDLLK+AAAGPLAGFS GFVL L+GFI PPSDG+G+V+D +VFHESFL GG AKLLLGDV
Sbjct: 354 EDLLKLAAAGPLAGFSFGFVLLLLGFILPPSDGLGLVIDPTVFHESFLVGGLAKLLLGDV 413

Query: 401 LKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLG 460
           LK+GT +S+NPLV+WAWAGLLINAINSIPAGELDGGRIA A+WGRK S+R++ ++I LLG
Sbjct: 414 LKEGTELSINPLVLWAWAGLLINAINSIPAGELDGGRIALAIWGRKISSRVSSLAIGLLG 473

Query: 461 LSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPF 520
           +S+LF+DV FYWVVL+FFLQRGPIAPLSEEITDP+  YI +GV +L  GLLVCLPYPFPF
Sbjct: 474 ISALFNDVAFYWVVLIFFLQRGPIAPLSEEITDPESNYIGIGVAILLFGLLVCLPYPFPF 533

Query: 521 SDQAVSNF 528
               +++ 
Sbjct: 534 DPSQLTDM 541

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218187492|gb|EEC69919.1| hypothetical protein OsI_00340 [Oryza sativa Indica Group]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/524 (64%), Positives = 413/524 (78%), Gaps = 18/524 (3%)

Query: 20  CCDIRFQPILASLHVT-RPVRCRLGNFSSYKVSRKKRELICR-VTDTQTEPDSNNDKEKE 77
           CC  R      SL  T RP R  L   S++ +  + R  +C+ +T+T+ + D N D+EKE
Sbjct: 23  CCQ-RILLASTSLPATGRPARLGLKLRSTHSLQIRNRRFVCQAMTETEPDGDGNGDEEKE 81

Query: 78  VHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNG------ 131
                 + P+  S  +++ S  +S+ ++    +  +N   ++ +      DG+       
Sbjct: 82  ELGDDASSPSVYSVTQENGSA-ESETNADNTKDETVNTEPLSSSDTVQNIDGDATPASDA 140

Query: 132 -------EVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVL 184
                  +VA GSPLPG+K QQLDE +RIPK TIDILKDQVFGFDTFFVT+QEPYEGG+L
Sbjct: 141 QENVEVVDVAVGSPLPGMK-QQLDESVRIPKATIDILKDQVFGFDTFFVTSQEPYEGGIL 199

Query: 185 FKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPE 244
           FKGNLRGQ AK+YEKI+ R++NKFGDQYKLFLL+NPEDDKPVAVVVPR+TLQPETTAVPE
Sbjct: 200 FKGNLRGQPAKSYEKITNRLQNKFGDQYKLFLLINPEDDKPVAVVVPRQTLQPETTAVPE 259

Query: 245 WFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHIL 304
           WFAA +FG+VT+FTLLLRNVP LQ NLLSTFDNL LL +G+ GALVTA +IGVHE+ HIL
Sbjct: 260 WFAAASFGVVTIFTLLLRNVPLLQDNLLSTFDNLELLKDGVYGALVTAAIIGVHEIAHIL 319

Query: 305 AAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLV 364
           AA+ TG++L VPYFVPSWQIGSFGAITRI NIV  REDLLKVAAAGPLAGFSLGFVL L+
Sbjct: 320 AARDTGIKLAVPYFVPSWQIGSFGAITRIVNIVRNREDLLKVAAAGPLAGFSLGFVLLLL 379

Query: 365 GFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINA 424
           GFI PPSDG+G+V+D +VFHESFL GG AKL+LGD LK+GT +S+NPLV+WAWAGLLINA
Sbjct: 380 GFILPPSDGLGLVIDPAVFHESFLVGGLAKLILGDALKEGTKLSINPLVLWAWAGLLINA 439

Query: 425 INSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPI 484
           INSIPAGELDGGRIAFA+WGRK S+R++ ++I LLG+S+LF+DV FYWVVL+FFLQRGPI
Sbjct: 440 INSIPAGELDGGRIAFAMWGRKISSRISSLAIGLLGISALFNDVAFYWVVLIFFLQRGPI 499

Query: 485 APLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF 528
           +PLSEEIT+P++ YI++GV +L  GLLVCLPYPFPF    +++F
Sbjct: 500 SPLSEEITEPENNYISIGVAILLFGLLVCLPYPFPFDPSQLTDF 543

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	528
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.717	0.681	0.704	9.6e-161
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.410	0.395	0.290	5.5e-30
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	0.642	0.591	0.239	1.5e-17

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1394 (495.8 bits), Expect = 9.6e-161, Sum P(2) = 9.6e-161
 Identities = 267/379 (70%), Positives = 301/379 (79%)

Query:   143 KPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIST 202
             +P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI T
Sbjct:   169 QPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKT 228

Query:   203 RMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLR 262
             RM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LR
Sbjct:   229 RMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLR 288

Query:   263 NVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSW 322
             NVPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSW
Sbjct:   289 NVPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSW 348

Query:   323 QIGSFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIGIVVDASV 382
             QIGSFGAITRI+NIV+KREDLLKVAAAGPLA               PPSDGIG+VVDASV
Sbjct:   349 QIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASV 408

Query:   383 FHESXXXXXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL 442
             FHES            D LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++
Sbjct:   409 FHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSI 468

Query:   443 WGRKASTRLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAXX 502
             WGRK +TRLT              DV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++  
Sbjct:   469 WGRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLG 528

Query:   503 XXXXXXXXXXXXPYPFPFS 521
                         PYPF F+
Sbjct:   529 ILVLFLSLLVCLPYPFAFT 547

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 5.5e-30, Sum P(2) = 5.5e-30
 Identities = 65/224 (29%), Positives = 96/224 (42%)

Query:   277 NLNLLTNGLPGALVTAL-VIGV---HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 332
             ++ LL   +  AL  A  V+G+   HELGH LAA    V+L +PYF+P+  +GSFGAIT+
Sbjct:   286 DMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFIPNITLGSFGAITQ 345

Query:   333 IRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXX--XXPPSDGIGIV-VDASVFHESXXX 389
              ++I+  R   + ++ AGP A                  P     +V V + +F  S   
Sbjct:   346 FKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTEPDAANDLVQVPSMLFQGSLLL 405

Query:   390 XXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKAST 449
                              +S++PLVI  W GL   A N +P G LDGGR     +G+ A  
Sbjct:   406 GLISRATLGYAALHAATVSIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGKNALV 465

Query:   450 RLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITD 493
                               +   W + V   QR P  P   ++T+
Sbjct:   466 TFGLSTYVMLGLRVLGGPLALPWGLYVLICQRTPEKPCLNDVTE 509

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 88/368 (23%), Positives = 152/368 (41%)

Query:   156 ETIDILK-DQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKL 214
             + +D+ K    FGFDTFF T+   +  G +F GNLR    +   K+  ++    G    +
Sbjct:   176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query:   215 FLLVNPEDD--KPVAVVVPRKT--LQPETTAVPE-WFAAGAFGL-VTVF-TLLLRNVPAL 267
             + +    ++  K V +V P+    LQ E+T +   W    A  L VT F T+ L +   L
Sbjct:   236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query:   268 QSNLLSTFDNLNLLTNGLP--GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIG 325
             + +  +TFD+   + N +P  G  ++  ++GV E+   + A   GV+L   + VPS   G
Sbjct:   296 KPD--ATFDDY--IANVVPLFGGFLS--ILGVSEIATRVTAARHGVKLSPSFLVPSNWTG 349

Query:   326 SFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIG---IVVDASV 382
               G +    +++  ++ L  +  A   +                 S   G   + +    
Sbjct:   350 CLGVMNNYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYIRPQF 409

Query:   383 FHESXXXXXXX------XXXXXDVLK---DGTPISVNPLVIWAWAGLLINAINSIPAGEL 433
             F  +                  +VL    +G  + V+PL      G+++ ++N +P G L
Sbjct:   410 FDNNPLLSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRL 469

Query:   434 DGGRIAFALWGRKASTRLTXXXXXXXXXXXXXXDVT-FYWVVLVFFLQRGPIAPLSEEIT 492
             +GGRIA A++GR  +  L+               V    W +   F + G   P  +EIT
Sbjct:   470 EGGRIAQAMFGRSTAAILSFTTSLLLGIGGLSGSVLCLAWGLFATFFRGGEETPAKDEIT 529

Query:   493 DPDDKYIA 500
                D   A
Sbjct:   530 PVGDDRFA 537

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.85	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	528
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	7e-35
pfam02163	206	pfam02163, Peptidase_M50, Peptidase family M50	7e-19
cd05709	180	cd05709, S2P-M50, Site-2 protease (S2P) class of z	1e-16
cd06161	208	cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease	9e-16
cd06164	227	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 prote	2e-11
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	4e-06
cd06163	182	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 p	3e-05
COG1994	230	COG1994, SpoIVFB, Zn-dependent proteases [General	7e-04
COG0658	453	COG0658, ComEC, Predicted membrane metal-binding p	0.003

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score =  128 bits (325), Expect = 7e-35
 Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 51/231 (22%)

Query: 250 AFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKST 309
              ++T+ T LL        +      N  LL  GLP AL    ++G+HE+GH LAA+  
Sbjct: 2   LLLVLTLLTTLL---VGAWLSGNDVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRH 58

Query: 310 GVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFP 369
           GV+  +PYF+P   IG+FGA  R+R+ +  R+ L  +A AGPLAG  L   + ++G    
Sbjct: 59  GVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---- 114

Query: 370 PSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP 429
                                                     L +  W GLL+ A+N +P
Sbjct: 115 ------------------------------------------LAVAGWVGLLVTALNLLP 132

Query: 430 AGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT--FYWVVLVFF 478
            G+LDGG I  AL+GR+ +  +    +V LGL +L+   +    W +L+  
Sbjct: 133 VGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLLLI 183

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|216910 pfam02163, Peptidase_M50, Peptidase family M50

 Score = 84.8 bits (210), Expect = 7e-19
 Identities = 49/209 (23%), Positives = 68/209 (32%), Gaps = 30/209 (14%)

Query: 286 PGALVTALVIGVHELGHILAAKSTGVE-----------------LGVPYFVPSWQIGSFG 328
              L   + + VHELGH L A+  GV+                     Y +      +FG
Sbjct: 1   AFILALLISVVVHELGHALVARRFGVKVERFAIGFGPLLFKHLDGATEYTIRLMFGWAFG 60

Query: 329 AITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 388
           A    R         L ++ AGPLA F L  +LF +  + P        V   V   S  
Sbjct: 61  APIERRFKKKSPWQRLLISLAGPLANFILALLLFALLLLLPG--IPVPPVIGGVVVGSSK 118

Query: 389 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---- 444
             G   +             V  L   A   L +   N +P   LDGG I  +L      
Sbjct: 119 LSGPVAIAKV-GSTSALSGLVALLAFLALLNLNLGLFNLLPIPPLDGGHILRSLLAVRGR 177

Query: 445 ------RKASTRLTGVSIVLLGLSSLFSD 467
                       +    ++LL L  LF+D
Sbjct: 178 PLNERAENYIYLVGLALLLLLILLLLFND 206

Length = 206

>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 47/200 (23%), Positives = 61/200 (30%), Gaps = 43/200 (21%)

Query: 285 LPGALVTALVIGVHELGHILAAKSTG--VELGVPYFVPSWQIGS---------FGAITRI 333
           L   L   + + VHELGH L A+  G  V      F  +               G   + 
Sbjct: 1   LAFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKP 60

Query: 334 -----RNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 388
                R     R   L VA AGPLA   L  +L L+  +        +   AS    + L
Sbjct: 61  VGENPRAFKKPRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLL 120

Query: 389 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---R 445
           A                          A   L +   N +P   LDGGRI  AL      
Sbjct: 121 AFL------------------------ALINLNLAVFNLLPIPPLDGGRILRALLEAIRG 156

Query: 446 KASTRLTGVSIVLLGLSSLF 465
           +   RL      +L    L 
Sbjct: 157 RVEERLEAYGFAILLGLLLL 176

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-binding proteins (SREBPs) from membranes of the ER. These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD superfamily. Prokaryotic S2P/M50 homologs have been shown to regulate stress responses, sporulation, cell division, and cell differentiation. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses, and in Bacillus subtilis, the S2P homolog SpoIVFB is involved in the pro-sigmaK pathway of spore formation. Some of the subfamilies within this hierarchy contain one or two PDZ domain insertions, with putative regulatory roles, such as the inhibition of substrate cleavage as seen by the RseP PDZ domain. Length = 180

>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 75.7 bits (187), Expect = 9e-16
 Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 51/207 (24%)

Query: 284 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 343
           GL  AL+  L + +HELGH L A+  G+       V S  +  FG +  +       ++ 
Sbjct: 30  GLLEALLLFLSVLLHELGHALVARRYGIR------VRSITLLPFGGVAELEEEPETPKEE 83

Query: 344 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 403
             +A AGPL    L  + +L+  + P                        + L       
Sbjct: 84  FVIALAGPLVSLLLAGLFYLLYLLLPGGG---------------PLSSLLEFL------- 121

Query: 404 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRKASTR-------LT 452
                       A   L++   N +PA  LDGGR+  AL     G + +TR       L 
Sbjct: 122 ------------AQVNLILGLFNLLPALPLDGGRVLRALLWRRTGYRRATRIAARIGQLF 169

Query: 453 GVSIVLLGLSSLFSDVTFYWVVLVFFL 479
            + +V+LGL  LF  +   W++L+   
Sbjct: 170 AILLVVLGLFLLFLGLGNLWLLLIALF 196

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. Length = 208

>gnl|CDD|100085 cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 55/213 (25%), Positives = 81/213 (38%), Gaps = 52/213 (24%)

Query: 284 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 343
           GL  AL+    + +HELGH L A+  G+       V S  +  FG + R+          
Sbjct: 45  GLAAALLLFASVLLHELGHSLVARRYGIP------VRSITLFLFGGVARLEREPETPGQE 98

Query: 344 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 403
             +A AGPL    L  +  L+    P S              +   G     L       
Sbjct: 99  FVIAIAGPLVSLVLALLFLLLSLALPGSG-------------AGPLGVLLGYL------- 138

Query: 404 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA-LWGRK---------AST--RL 451
                       A   LL+   N +PA  LDGGR+  A LW R          A+   R 
Sbjct: 139 ------------ALINLLLAVFNLLPAFPLDGGRVLRALLWRRTGDYLKATRIAAWVGRG 186

Query: 452 TGVSIVLLGLSSLFSDVT--FYWVVLVFFLQRG 482
             V +++LGL SLF ++    + +++ +FL  G
Sbjct: 187 FAVLLIILGLLSLFLNLLGGLWLILIAWFLYIG 219

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 227

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 39/204 (19%), Positives = 62/204 (30%), Gaps = 21/204 (10%)

Query: 284 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR-------IRNI 336
           G    L+T LVI +    H +AA+        P  +P  + G                  
Sbjct: 176 GDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPVVIPL-KPGDKIVAVDVGAIGLSPNGE 234

Query: 337 VSKREDLLKVAAAGPLAGFSLGF--VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAK 394
               + L+K    GPL    L       LV         + I  D S+     L+G    
Sbjct: 235 PDVGKVLVKY---GPLEAVGLAVEKTGRLVKLTLKMLKKL-ITGDLSL---KNLSGPIGI 287

Query: 395 LLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGV 454
             +         I  N L   A   + +  +N +P   LDGG + F L       +    
Sbjct: 288 AKIAGAAASLGLI--NLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEAL-RGKPLSE 344

Query: 455 SIVLLGLSSLFSDVTFYWVVLVFF 478
            +         + +    ++L  F
Sbjct: 345 RVEAALYRIGLALLLL-LMLLATF 367

Length = 375

>gnl|CDD|100084 cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 59/207 (28%), Positives = 83/207 (40%), Gaps = 51/207 (24%)

Query: 285 LPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFG-AITRIRNIVSKREDL 343
           L   LV  ++I VHELGH L AK  GV+      V  + IG FG  +   +    K E  
Sbjct: 2   LAFILVLGILIFVHELGHFLVAKLFGVK------VEEFSIG-FGPKLFSFK----KGETE 50

Query: 344 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHES--------FLAGGFAKL 395
             ++A  PL     G+V  L G    P +      D   F+            AG  A  
Sbjct: 51  YSISAI-PLG----GYVKML-GED--PEEEADPEDDPRSFNSKPVWQRILIVFAGPLANF 102

Query: 396 LLGDVLKDGTPISVNPLVIWAWAGLL-IN--AINSIPAGELDGGRIAFALW----GRKAS 448
           LL  VL           V+ ++  LL IN   +N +P   LDGG + F L     GR  S
Sbjct: 103 LLAIVLF---------AVLLSFLALLSINLGILNLLPIPALDGGHLLFLLIEAIRGRPLS 153

Query: 449 TRLTGVS-------IVLLGLSSLFSDV 468
            ++  +        ++ L L   F+D+
Sbjct: 154 EKVEEIIQTIGFALLLGLMLFVTFNDI 180

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA. Length = 182

>gnl|CDD|224905 COG1994, SpoIVFB, Zn-dependent proteases [General function prediction only]

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 39/188 (20%), Positives = 58/188 (30%), Gaps = 41/188 (21%)

Query: 298 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAI-TRIRNIVSKREDLLKVA-AAGPLAGF 355
           H LGH   A   G++L +         G    +    R     R     V+ A GPL   
Sbjct: 58  HPLGHSDEAGRLGLKLLLALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPLTNI 117

Query: 356 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 415
           +L  +  L   +F                 S L    A L L           VN     
Sbjct: 118 ALAVLGLLALSLFLYH--------------SVLFAFLAALAL-----------VN----- 147

Query: 416 AWAGLLINAINSIPAGELDGGRIAFALWGRKAS-----TRLTGVSIVLLGLSSLFSDVTF 470
               L++   N +P   LDGGR+  AL  R+         L  +  +L+ + +    +  
Sbjct: 148 ----LVLALFNLLPIPPLDGGRVLRALLPRRYGAAIAAIELAALLGLLVLILAGILGLLV 203

Query: 471 YWVVLVFF 478
               L   
Sbjct: 204 LNPPLRLI 211

Length = 230

>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General function prediction only]

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 37/232 (15%)

Query: 300 LGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGF 359
           L   L A+  G    V       +       +RIR +V+    LL +   GPL G  L  
Sbjct: 161 LEAYLGAQGIGALGTVFQAAIISRSLPRFLRSRIRRLVA---QLLYLLLLGPLGGLLLAL 217

Query: 360 VLFLVGFIFPP------SDGIGIVVDASVFHESFLAGGFAKLL--LGDVLKDGTPISVNP 411
           +L  +  +F        + G+  ++  S  H + LAG F  LL  LG  +    P+ +  
Sbjct: 218 LLGELSGLFKELWEAFRALGLAHLLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGL 277

Query: 412 L-VIWAW-AGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT 469
           L + +A   G   + + ++         +A AL    +   L+ + I+LL   ++   + 
Sbjct: 278 LALFYAILTGFSPSVLRALVM-------LALALLASLSLRNLSSIFILLLSAIAILL-LA 329

Query: 470 FYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 521
              ++ + F        LS         ++A+  L+L+  L   L   +P  
Sbjct: 330 PLAILSLGF-------WLS---------FLAVAALILWSQLFRLLGLSWPLP 365

Length = 453

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	528
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	99.97
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.93
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.91
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.85
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.85
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.82
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	99.78
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	99.76
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	99.76
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.52
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.51
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	99.32
COG0750	375	Predicted membrane-associated Zn-dependent proteas	98.89
PF13398	200	Peptidase_M50B: Peptidase M50B-like	97.33
COG0750	375	Predicted membrane-associated Zn-dependent proteas	96.29
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	96.18

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.97  E-value=3.2e-31  Score=253.23  Aligned_cols=177  Identities=40%  Similarity=0.706  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHhcccccccchhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeecceE
Q 009686          251 FGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI  330 (528)
Q Consensus       251 ~~l~T~~T~~~a~~~~L~~~~~~~~~~~~~l~~glp~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~FIP~i~LgtfGAv  330 (528)
                      ++++|+.+....+.-... +  +..++++.+..+++++++++.++++||+||+++||++|+|++.++++|...+|++|++
T Consensus         3 ~~~~s~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~   79 (183)
T cd06160           3 LLVLTLLTTLLVGAWLSG-N--DVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAF   79 (183)
T ss_pred             HHHHHHHHHHHHHHHHhc-c--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEE
Confidence            456666666655421111 1  2236778888999999999999999999999999999999999999998779999999


Q ss_pred             EeccccccCccceeeeEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccch
Q 009686          331 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVN  410 (528)
Q Consensus       331 i~~~s~~~~R~alfdIAiAGPLAg~llAl~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lh  410 (528)
                      ++.++..++|+++++|++|||++|+++++++++++                                             
T Consensus        80 ~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~~---------------------------------------------  114 (183)
T cd06160          80 IRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---------------------------------------------  114 (183)
T ss_pred             EEecCCCCChhHhehhhhhHHHHHHHHHHHHHHHH---------------------------------------------
Confidence            99988888999999999999999999988775543                                             


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCChHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHH
Q 009686          411 PLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSD--VTFYWVVLV  476 (528)
Q Consensus       411 PL~~agwinLvltafNLLPigpLDGGrIl~Allgrr~a~~is~~~~~lLGl~~l~~~--~~l~W~lli  476 (528)
                       +..++|+|+++++|||+|++|||||||+++++++|++.++++++.+++|+.++.++  .+++|+.++
T Consensus       115 -~~~~~~~nl~l~~fNLLPi~PLDGGril~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  181 (183)
T cd06160         115 -LAVAGWVGLLVTALNLLPVGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLL  181 (183)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCCcChHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             12468899999999999999999999999999999999999999899998888765  455555443

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.93  E-value=5.5e-25  Score=216.40  Aligned_cols=134  Identities=31%  Similarity=0.406  Sum_probs=111.3

Q ss_pred             cchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeecceEEeccccccCccceeeeEecchhhHH
Q 009686          276 DNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF  355 (528)
Q Consensus       276 ~~~~~l~~glp~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~FIP~i~LgtfGAvi~~~s~~~~R~alfdIAiAGPLAg~  355 (528)
                      .+...+..|+.++++++.++++||+||+++||++|+++.      .+.+.+||+++++++...++++++.|++|||++|+
T Consensus        37 ~~~~~~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~~IalAGPl~Nl  110 (227)
T cd06164          37 LGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIPVR------SITLFLFGGVARLEREPETPGQEFVIAIAGPLVSL  110 (227)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEC------eEEEEeeeEEEEecCCCCCHHHHhhhhhhHHHHHH
Confidence            345667889999999999999999999999999999997      67888899999999888889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCCh
Q 009686          356 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDG  435 (528)
Q Consensus       356 llAl~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigpLDG  435 (528)
                      +++++++++....+...            .+.+                    ...+.+.+|+|+++++|||+|++||||
T Consensus       111 lla~i~~~l~~~~~~~~------------~~~~--------------------~~~~~~~~~~Nl~l~~fNLlP~~PLDG  158 (227)
T cd06164         111 VLALLFLLLSLALPGSG------------AGPL--------------------GVLLGYLALINLLLAVFNLLPAFPLDG  158 (227)
T ss_pred             HHHHHHHHHHHHhcccc------------chHH--------------------HHHHHHHHHHHHHHHHHhCcCCCCCCh
Confidence            99998887765432110            0000                    012456789999999999999999999


Q ss_pred             HHHHHHhhhhhH
Q 009686          436 GRIAFALWGRKA  447 (528)
Q Consensus       436 GrIl~Allgrr~  447 (528)
                      |||+++++.++.
T Consensus       159 gril~~ll~~~~  170 (227)
T cd06164         159 GRVLRALLWRRT  170 (227)
T ss_pred             HHHHHHHHHHhc
Confidence            999999976654

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.91  E-value=2.1e-23  Score=202.21  Aligned_cols=129  Identities=29%  Similarity=0.433  Sum_probs=107.8

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeecceEEeccccccCccceeeeEecchhhHHHHH
Q 009686          279 NLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG  358 (528)
Q Consensus       279 ~~l~~glp~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~FIP~i~LgtfGAvi~~~s~~~~R~alfdIAiAGPLAg~llA  358 (528)
                      ..+..++.+++.++.++++||+||+++||++|+++.      .+.+.+||+++++++...+|++++.|++|||++|++++
T Consensus        25 ~~~~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la   98 (208)
T cd06161          25 VAWLLGLLEALLLFLSVLLHELGHALVARRYGIRVR------SITLLPFGGVAELEEEPETPKEEFVIALAGPLVSLLLA   98 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc------ceEEEeeeeeeeeccCCCChhHheeeeeehHHHHHHHH
Confidence            456788899999999999999999999999999997      78888899999998777789999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHH
Q 009686          359 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRI  438 (528)
Q Consensus       359 l~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigpLDGGrI  438 (528)
                      +++.++....+..              +                    .....+.+.+++|+++++|||+|+.|||||||
T Consensus        99 ~~~~~l~~~~~~~--------------~--------------------~~~~~~~~~~~~N~~l~lfNLlPi~pLDGg~i  144 (208)
T cd06161          99 GLFYLLYLLLPGG--------------G--------------------PLSSLLEFLAQVNLILGLFNLLPALPLDGGRV  144 (208)
T ss_pred             HHHHHHHHHcccc--------------h--------------------HHHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            9887665432110              0                    00123456789999999999999999999999


Q ss_pred             HHHhhhhhH
Q 009686          439 AFALWGRKA  447 (528)
Q Consensus       439 l~Allgrr~  447 (528)
                      +++++.++.
T Consensus       145 l~~ll~~~~  153 (208)
T cd06161         145 LRALLWRRT  153 (208)
T ss_pred             HHHHHHHhc
Confidence            999976653

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=7.5e-21  Score=181.90  Aligned_cols=112  Identities=33%  Similarity=0.458  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc---cc------------ceeeecceEEecccccc------------
Q 009686          286 PGALVTALVIGVHELGHILAAKSTGVELGVPYFV---PS------------WQIGSFGAITRIRNIVS------------  338 (528)
Q Consensus       286 p~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~FI---P~------------i~LgtfGAvi~~~s~~~------------  338 (528)
                      .+.+++.+++++||+||+++||++|+++.. +.|   |.            +.+.++|+++++++..+            
T Consensus         3 ~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~-f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~   81 (182)
T cd06163           3 AFILVLGILIFVHELGHFLVAKLFGVKVEE-FSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRS   81 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeE-eeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHH
Confidence            355667788999999999999999999862 111   21            23567999998864311            


Q ss_pred             ----CccceeeeEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHH
Q 009686          339 ----KREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVI  414 (528)
Q Consensus       339 ----~R~alfdIAiAGPLAg~llAl~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~  414 (528)
                          ++++++.|++|||++|+++|++++++.                                              +.+
T Consensus        82 f~~~~~~~ri~V~lAGP~~NlilA~i~~~~~----------------------------------------------~~~  115 (182)
T cd06163          82 FNSKPVWQRILIVFAGPLANFLLAIVLFAVL----------------------------------------------LSF  115 (182)
T ss_pred             HccCCcchhhhhhhhHHHHHHHHHHHHHHHH----------------------------------------------HHH
Confidence                467899999999999999998664321                                              224


Q ss_pred             HHHHHHHHHHHhhcCCCCCChHHHHHHhhh
Q 009686          415 WAWAGLLINAINSIPAGELDGGRIAFALWG  444 (528)
Q Consensus       415 agwinLvltafNLLPigpLDGGrIl~Allg  444 (528)
                      ..++|+.+++|||+|++||||||++++++.
T Consensus       116 ~~~~n~~l~~fNLlPippLDGg~il~~~~~  145 (182)
T cd06163         116 LALLSINLGILNLLPIPALDGGHLLFLLIE  145 (182)
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            578999999999999999999999999985

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=8.3e-21  Score=178.22  Aligned_cols=139  Identities=28%  Similarity=0.328  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccc----ccccc-------cceeeecceEEecccccc-----CccceeeeEec
Q 009686          286 PGALVTALVIGVHELGHILAAKSTGVELGV----PYFVP-------SWQIGSFGAITRIRNIVS-----KREDLLKVAAA  349 (528)
Q Consensus       286 p~aL~Ll~iL~iHElGH~laArr~Gvk~s~----P~FIP-------~i~LgtfGAvi~~~s~~~-----~R~alfdIAiA  349 (528)
                      .+.+++++++.+||+||+++||++|+++..    ..+.|       .+.+.++|+++++.+...     +|++++.|++|
T Consensus         2 ~~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~~~~~~~~~~~i~la   81 (180)
T cd05709           2 AFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRAFKKPRWQRLLVALA   81 (180)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhhhccchhhhhhhhhh
Confidence            356678889999999999999999997741    11111       122345699998876554     48899999999


Q ss_pred             chhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcC
Q 009686          350 GPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP  429 (528)
Q Consensus       350 GPLAg~llAl~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLP  429 (528)
                      ||++|++++++++++..........    ..   ..+                 ......+.+.+.+|+|+.+++|||+|
T Consensus        82 GPl~nllla~i~~~~~~~~~~~~~~----~~---~~~-----------------~~~~~~~~l~~~~~~n~~l~~fNLlP  137 (180)
T cd05709          82 GPLANLLLALLLLLLLLLLGGLPPA----PV---GQA-----------------ASSGLANLLAFLALINLNLAVFNLLP  137 (180)
T ss_pred             hHHHHHHHHHHHHHHHHHHccCCcc----ch---hhh-----------------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999988776543221000    00   000                 00111245667899999999999999


Q ss_pred             CCCCChHHHHHHhhhhhHH
Q 009686          430 AGELDGGRIAFALWGRKAS  448 (528)
Q Consensus       430 igpLDGGrIl~Allgrr~a  448 (528)
                      ++||||||++++++.++..
T Consensus       138 i~plDGg~il~~~l~~~~~  156 (180)
T cd05709         138 IPPLDGGRILRALLEAIRG  156 (180)
T ss_pred             CCCCChHHHHHHHHhHHHH
Confidence            9999999999999887754

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.82  E-value=4.4e-19  Score=178.48  Aligned_cols=119  Identities=26%  Similarity=0.325  Sum_probs=93.0

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeecceEEeccccc---cCccceeeeEecchhhHHHH
Q 009686          281 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIV---SKREDLLKVAAAGPLAGFSL  357 (528)
Q Consensus       281 l~~glp~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~FIP~i~LgtfGAvi~~~s~~---~~R~alfdIAiAGPLAg~ll  357 (528)
                      ....+.+.++++.++.+||+||+++||++|+++..--+  .+.+.++||++++++..   .++++++.|++|||++|+++
T Consensus       107 ~i~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl--~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvl  184 (263)
T cd06159         107 FIPLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGL--LLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVV  184 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhH--HHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHH
Confidence            33556667788889999999999999999999973111  01123478999886544   46789999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHH
Q 009686          358 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGR  437 (528)
Q Consensus       358 Al~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigpLDGGr  437 (528)
                      |++++++..                                             +.+..|+|+.+++|||+|+.||||||
T Consensus       185 a~i~~~l~~---------------------------------------------l~~~~~~N~~l~lFNLlP~~PLDGg~  219 (263)
T cd06159         185 ALIAFALFF---------------------------------------------LYWIFWINFLLGLFNCLPAIPLDGGH  219 (263)
T ss_pred             HHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhCCCCCCCChHH
Confidence            987754321                                             22457899999999999999999999


Q ss_pred             HHHHhhhhh
Q 009686          438 IAFALWGRK  446 (528)
Q Consensus       438 Il~Allgrr  446 (528)
                      ++++++..+
T Consensus       220 il~~ll~~~  228 (263)
T cd06159         220 VFRDLLEAL  228 (263)
T ss_pred             HHHHHHHHH
Confidence            999996544

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.78  E-value=6.8e-19  Score=166.14  Aligned_cols=127  Identities=28%  Similarity=0.345  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccccccc----ccc----------ceeeecceE---------------Eeccccc
Q 009686          287 GALVTALVIGVHELGHILAAKSTGVELGVPYF----VPS----------WQIGSFGAI---------------TRIRNIV  337 (528)
Q Consensus       287 ~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~F----IP~----------i~LgtfGAv---------------i~~~s~~  337 (528)
                      +.+++++++.+||+||+++|+++|+++.....    .+.          +.+.++|++               ...+...
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            35677789999999999999999999975421    110          001122322               2222234


Q ss_pred             cCccceeeeEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHH
Q 009686          338 SKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW  417 (528)
Q Consensus       338 ~~R~alfdIAiAGPLAg~llAl~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agw  417 (528)
                      .+|++.+.|++|||++|++++++++.+.........                              ......+.+.+++|
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~  131 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGSVG------------------------------WSSFFAEFLFFFAW  131 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS-------------------------------------EETTEEHHHHHHH
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhcccc------------------------------ccHHHHHHHHHHHH
Confidence            567889999999999999999888766543221000                              01122345778899


Q ss_pred             HHHHHHHHhhcCCCCCChHHHHHHhh
Q 009686          418 AGLLINAINSIPAGELDGGRIAFALW  443 (528)
Q Consensus       418 inLvltafNLLPigpLDGGrIl~All  443 (528)
                      +|+.++++||+|++||||||++++++
T Consensus       132 ~n~~l~~~NllPi~~lDG~~il~~l~  157 (192)
T PF02163_consen  132 LNFILALFNLLPIPPLDGGRILRALL  157 (192)
T ss_dssp             HHHHHHHHTTSSSSSSHHHHHHHHHH
T ss_pred             HHHHHhhhhcccCCcCCHHHHHHHHH
Confidence            99999999999999999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=99.76  E-value=8.9e-18  Score=170.05  Aligned_cols=114  Identities=25%  Similarity=0.229  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeec----ceEEecccc---ccCccceeeeEecchhhHHHHHH
Q 009686          287 GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSF----GAITRIRNI---VSKREDLLKVAAAGPLAGFSLGF  359 (528)
Q Consensus       287 ~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~FIP~i~Lgtf----GAvi~~~s~---~~~R~alfdIAiAGPLAg~llAl  359 (528)
                      +.++++.++.+||+||+++|+++|+++.      .+.+..|    ||+++..+.   ..++++++.|+.|||++|+++|+
T Consensus       130 ~l~al~isvvvHElgHal~A~~~gi~V~------~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~  203 (277)
T cd06162         130 YFTALLISGVVHEMGHGVAAVREQVRVN------GFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGL  203 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeec------eEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHHHH
Confidence            4566788999999999999999999998      4444344    899987433   23567789999999999999998


Q ss_pred             HHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHH
Q 009686          360 VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA  439 (528)
Q Consensus       360 ~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigpLDGGrIl  439 (528)
                      +++++.+.                  +                        -+.+..++|+.+++|||+|+.|||||||+
T Consensus       204 i~~~l~~~------------------~------------------------~l~~la~iNl~lavfNLlP~~pLDGg~il  241 (277)
T cd06162         204 VGYLLLIE------------------T------------------------FLKYLISLSGALAVINAVPCFALDGQWIL  241 (277)
T ss_pred             HHHHHHHH------------------H------------------------HHHHHHHHHHHHHHhhcCCCCCCChHHHH
Confidence            77653210                  0                        13356789999999999999999999999


Q ss_pred             HHhhhhhHH
Q 009686          440 FALWGRKAS  448 (528)
Q Consensus       440 ~Allgrr~a  448 (528)
                      ++++.++..
T Consensus       242 ~~ll~~~~~  250 (277)
T cd06162         242 STFLEATLV  250 (277)
T ss_pred             HHHHHHHhC
Confidence            999765543

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.76  E-value=2.9e-18  Score=163.60  Aligned_cols=135  Identities=26%  Similarity=0.325  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccc----cccccc--------ce--ee--ecceEEec-----cccccCccceee
Q 009686          287 GALVTALVIGVHELGHILAAKSTGVELGV----PYFVPS--------WQ--IG--SFGAITRI-----RNIVSKREDLLK  345 (528)
Q Consensus       287 ~aL~Ll~iL~iHElGH~laArr~Gvk~s~----P~FIP~--------i~--Lg--tfGAvi~~-----~s~~~~R~alfd  345 (528)
                      ..++++.++.+||+||+++|+++|+++..    -.+-|.        +.  +.  ..+++.+.     +...++|++++.
T Consensus         4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~   83 (181)
T cd06158           4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLL   83 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhh
Confidence            44567789999999999999999999862    112221        00  00  02334332     222345788999


Q ss_pred             eEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHH
Q 009686          346 VAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAI  425 (528)
Q Consensus       346 IAiAGPLAg~llAl~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agwinLvltaf  425 (528)
                      |++|||++|+++++++.++........+         ...+.+                    ...+....++|+.+++|
T Consensus        84 valAGP~~n~~la~i~~~~~~~~~~~~~---------~~~~~l--------------------~~~~~~~~~~Ni~l~lf  134 (181)
T cd06158          84 VSLAGPLSNLLLALLFALLLRLLPAFGG---------VVASFL--------------------FLMLAYGVLINLVLAVF  134 (181)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhccccc---------hhhHHH--------------------HHHHHHHHHHHHHHHHH
Confidence            9999999999999887665443211100         000111                    01234567899999999


Q ss_pred             hhcCCCCCChHHHHHHhhhhhHHHH
Q 009686          426 NSIPAGELDGGRIAFALWGRKASTR  450 (528)
Q Consensus       426 NLLPigpLDGGrIl~Allgrr~a~~  450 (528)
                      ||+|++|||||||+++++.++....
T Consensus       135 NLlPipPLDG~~il~~~l~~~~~~~  159 (181)
T cd06158         135 NLLPIPPLDGSKILAALLPRRLAEA  159 (181)
T ss_pred             HhCCCCCCChHHHHHHHcchhHHHH
Confidence            9999999999999999998876543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>TIGR00054 RIP metalloprotease RseP

Probab=99.52  E-value=1.9e-13  Score=145.44  Aligned_cols=80  Identities=26%  Similarity=0.413  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccc-cccc-c------------cceeeecceEEecccc----------------
Q 009686          287 GALVTALVIGVHELGHILAAKSTGVELGV-PYFV-P------------SWQIGSFGAITRIRNI----------------  336 (528)
Q Consensus       287 ~aL~Ll~iL~iHElGH~laArr~Gvk~s~-P~FI-P------------~i~LgtfGAvi~~~s~----------------  336 (528)
                      +.+.+.+++++||+||+++||++|+++.. .... |            .+.+.++|+++++...                
T Consensus         9 ~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~~f   88 (420)
T TIGR00054         9 SILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGDLF   88 (420)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhhhh
Confidence            35566678899999999999999999861 1111 2            1336689999998411                


Q ss_pred             -ccCccceeeeEecchhhHHHHHHHHHHHHh
Q 009686          337 -VSKREDLLKVAAAGPLAGFSLGFVLFLVGF  366 (528)
Q Consensus       337 -~~~R~alfdIAiAGPLAg~llAl~llligl  366 (528)
                       ..+.++++.|.+|||++|+++|++++++.+
T Consensus        89 ~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~  119 (420)
T TIGR00054        89 NNKSVFQKAIIIFAGPLANFIFAIFVYIFIS  119 (420)
T ss_pred             ccCCHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence             034577899999999999999998876543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.51  E-value=1.8e-13  Score=146.51  Aligned_cols=83  Identities=20%  Similarity=0.313  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc-cccc-cc-------------ceeeecceEEecccc------------
Q 009686          284 GLPGALVTALVIGVHELGHILAAKSTGVELGV-PYFV-PS-------------WQIGSFGAITRIRNI------------  336 (528)
Q Consensus       284 glp~aL~Ll~iL~iHElGH~laArr~Gvk~s~-P~FI-P~-------------i~LgtfGAvi~~~s~------------  336 (528)
                      .+.+.+++.+++++||+||+++||++|+++.. .... |.             +-+.++|++.+|...            
T Consensus         7 i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~~   86 (449)
T PRK10779          7 LAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRHH   86 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhhh
Confidence            34466667778899999999999999999972 1111 10             235578999987432            


Q ss_pred             ---ccCccceeeeEecchhhHHHHHHHHHHHHh
Q 009686          337 ---VSKREDLLKVAAAGPLAGFSLGFVLFLVGF  366 (528)
Q Consensus       337 ---~~~R~alfdIAiAGPLAg~llAl~llligl  366 (528)
                         .++.++++.|.+|||++|+++|++++.+-+
T Consensus        87 ~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~  119 (449)
T PRK10779         87 AFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVF  119 (449)
T ss_pred             hhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence               123578899999999999999998865543

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=99.32  E-value=2.1e-11  Score=120.35  Aligned_cols=130  Identities=25%  Similarity=0.327  Sum_probs=84.7

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeecceEEeccccccCccceeee-------Eec-chh
Q 009686          281 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKV-------AAA-GPL  352 (528)
Q Consensus       281 l~~glp~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~FIP~i~LgtfGAvi~~~s~~~~R~alfdI-------AiA-GPL  352 (528)
                      +.++....++++..+..||+||...++++|++..      .+.++.+|++..++..+.+.+..+.+       +.| ||+
T Consensus        41 ~~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~------~~~i~~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~algpl  114 (230)
T COG1994          41 LGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLL------LALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPL  114 (230)
T ss_pred             HhhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHH------HHHHHhccceeeecCcCcCHHHHhhhhccchhHHHHHHHH
Confidence            4555555555777899999999999999999986      44443467777776655555444444       444 555


Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 009686          353 AGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGE  432 (528)
Q Consensus       353 Ag~llAl~llligl~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigp  432 (528)
                      .|+.+++++ ....  +..           ...+.+                    ..-+...+.+|+++++|||+|++|
T Consensus       115 ~ni~la~~~-~~~~--~~~-----------~~~~~~--------------------~~~~~~la~~Nl~L~lFNLiPi~P  160 (230)
T COG1994         115 TNIALAVLG-LLAL--SLF-----------LYHSVL--------------------FAFLAALALVNLVLALFNLLPIPP  160 (230)
T ss_pred             HHHHHHHHH-HHhh--ccc-----------ccchhH--------------------HHHHHHHHHHHHHHHHHhCCCCCC
Confidence            555555443 0000  000           000000                    111234577999999999999999


Q ss_pred             CChHHHHHHhhhhhHHHH
Q 009686          433 LDGGRIAFALWGRKASTR  450 (528)
Q Consensus       433 LDGGrIl~Allgrr~a~~  450 (528)
                      |||||++|+++.++....
T Consensus       161 LDGg~vlr~~~~~~~~~~  178 (230)
T COG1994         161 LDGGRVLRALLPRRYGAA  178 (230)
T ss_pred             CChHHHHHHHccHHHHHH
Confidence            999999999988876533

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=98.89  E-value=1.6e-09  Score=111.96  Aligned_cols=244  Identities=14%  Similarity=0.058  Sum_probs=137.9

Q ss_pred             cccccceeeeccccccCceEEEEeccCChhHHHHHHHHHHHHhHhCCceEEEEEecCCCCCcEEEEEcCCCCCCCCCChh
Q 009686          164 QVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVP  243 (528)
Q Consensus       164 ~~Fg~dtF~~t~~~~~~~gvi~rGnLR~~~e~~y~~l~~~l~~~fGd~y~lfl~~~~~~~kPv~~v~P~~~~~p~~~~~~  243 (528)
                      .+++.++|+.....+ ...+++.|.+.......+..+...+  ..|..+         ...|+..   +  ....     
T Consensus        82 ~~~~~~~f~~~~~~~-~~~~~~~Gp~~n~i~~~~~~~~~~~--~~G~~~---------~~~~~~~---~--v~~~-----  139 (375)
T COG0750          82 PEPRPRAFNAKSVWQ-RIAIVFAGPLFNFILAIVLFVVLFF--VIGLVP---------VASPVVG---E--VAPK-----  139 (375)
T ss_pred             cCcchhhhhcccccc-hhheeechHHHHHHHHHHHHHhhhe--Eeeeee---------eccCeee---e--cCCC-----
Confidence            588899999999999 9999999999988766665544433  223111         1122221   0  0000     


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccccchhhcccchHHHHhhHHHHHH----HHHHHHHH--HHHHHHHHHHcCCcccccc
Q 009686          244 EWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALV----TALVIGVH--ELGHILAAKSTGVELGVPY  317 (528)
Q Consensus       244 ~~~~~~l~~l~T~~T~~~a~~~~L~~~~~~~~~~~~~l~~glp~aL~----Ll~iL~iH--ElGH~laArr~Gvk~s~P~  317 (528)
                               ..+..+.+..|...+..+- +...+++..........+    .+.+.+.|  +..|..+++.++.....|+
T Consensus       140 ---------s~a~~a~l~~Gd~iv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~  209 (375)
T COG0750         140 ---------SAAALAGLRPGDRIVAVDG-EKVASWDDVRRLLVAAAGDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPV  209 (375)
T ss_pred             ---------CHHHHcCCCCCCEEEeECC-EEccCHHHHHHHHHhccCCcccceEEEEEeccceeeeccccceeeEeeecc
Confidence                     0111223333433332221 112223222221211111    34567788  9999999998888888898


Q ss_pred             ccccceeeecceEEe--ccccccC-----ccceeeeEecchhhHHHHHHHHHHHHhhcCCCCCCcccccccchhhhhhhh
Q 009686          318 FVPSWQIGSFGAITR--IRNIVSK-----REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAG  390 (528)
Q Consensus       318 FIP~i~LgtfGAvi~--~~s~~~~-----R~alfdIAiAGPLAg~llAl~llligl~l~~s~~~~~~v~~~~f~~s~L~g  390 (528)
                      ++| ...+..++.++  ..+..++     ++...++..+++++. .+.-...++.+.+...    .......+..+.+.+
T Consensus       210 ~~~-~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~~-~v~~~~~~~~~~~~~l----~~~~~~~~~~~~l~G  283 (375)
T COG0750         210 VIP-LKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVGL-AVEKTGRLVKLTLKML----KKLITGDLSLKNLSG  283 (375)
T ss_pred             eec-cCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHHH-HHHHHHHHHHHHHHHH----HHheecccccccccC
Confidence            876 44555554443  3333444     788999999999993 3444444444332100    000011112222222


Q ss_pred             hhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHhhhhhH
Q 009686          391 GFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKA  447 (528)
Q Consensus       391 ~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigpLDGGrIl~Allgrr~  447 (528)
                      .+.....+....  .....|++.+++|+|+.++++||+|+++|||||++++++.+..
T Consensus       284 pi~i~~~~~~~~--~~~~~~~l~~~~~lsi~lg~lNllP~p~LDGG~i~~~~~e~~~  338 (375)
T COG0750         284 PIGIAKIAGAAA--SLGLINLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEALR  338 (375)
T ss_pred             ceehhhhhhHHH--hhHHHHHHHHHHHHHHHHHHHhccCCCccCccHHHHHHHHHHh
Confidence            221111111100  1235689999999999999999999999999999999986654

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=97.33  E-value=0.00069  Score=66.05  Aligned_cols=65  Identities=31%  Similarity=0.274  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCccccccccccceeee-cceEEeccccccCccceeeeEecchhhHHHHHHHHHHHH
Q 009686          293 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGS-FGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  365 (528)
Q Consensus       293 ~iL~iHElGH~laArr~Gvk~s~P~FIP~i~Lgt-fGAvi~~~s~~~~R~alfdIAiAGPLAg~llAl~lllig  365 (528)
                      ....+||+||+++|...|-++.      .+.+.+ -++.+..+.  +++...+.++.|||++..+++..++..+
T Consensus        23 l~t~~HE~gHal~a~l~G~~v~------~i~l~~~~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   23 LVTFVHELGHALAALLTGGRVK------GIVLFPDGSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc------eEEEEeCCCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            3578999999999999999998      555544 466776665  5666789999999999999887776655

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=96.29  E-value=0.012  Score=61.18  Aligned_cols=82  Identities=27%  Similarity=0.385  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--cc-------c------ceeeecceEEecccccc-----------
Q 009686          285 LPGALVTALVIGVHELGHILAAKSTGVELGVPYF--VP-------S------WQIGSFGAITRIRNIVS-----------  338 (528)
Q Consensus       285 lp~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~F--IP-------~------i~LgtfGAvi~~~s~~~-----------  338 (528)
                      +.+.+.+...+.+||+||+|.||++|+++.....  -|       .      +...+.|++.++.....           
T Consensus         6 i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv~~~~~~~~~~~~~~~~~~   85 (375)
T COG0750           6 IAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYVKMLGEDAEEVVLKGPEPR   85 (375)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceEEEecCccccccccccCcc
Confidence            3345556668899999999999999999973111  11       0      11335566655432111           


Q ss_pred             -------CccceeeeEecchhhHHHHHHHHHHHHh
Q 009686          339 -------KREDLLKVAAAGPLAGFSLGFVLFLVGF  366 (528)
Q Consensus       339 -------~R~alfdIAiAGPLAg~llAl~llligl  366 (528)
                             +-...+.+.+|||+.|++.++...+...
T Consensus        86 ~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          86 PRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             hhhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence                   1122678999999999998877766554

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.0043  Score=66.43  Aligned_cols=82  Identities=28%  Similarity=0.313  Sum_probs=53.4

Q ss_pred             HhhHHHH-HHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeecceEEecccc----ccCccceeeeEecchhhHHH
Q 009686          282 TNGLPGA-LVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNI----VSKREDLLKVAAAGPLAGFS  356 (528)
Q Consensus       282 ~~glp~a-L~Ll~iL~iHElGH~laArr~Gvk~s~P~FIP~i~LgtfGAvi~~~s~----~~~R~alfdIAiAGPLAg~l  356 (528)
                      +.+++|. ..+++.+.+||+||+|||.+.|+++.  +|=-.+..--=||++.+...    .+. -....|.-||-.-||+
T Consensus       120 l~~I~yf~t~lvi~~vvHElGHalAA~segV~vn--gfgIfi~aiyPgafvdl~~dhLqsl~~-fr~LrIfcAGIWHNfv  196 (484)
T KOG2921|consen  120 LSGIAYFLTSLVITVVVHELGHALAAASEGVQVN--GFGIFIAAIYPGAFVDLDNDHLQSLPS-FRALRIFCAGIWHNFV  196 (484)
T ss_pred             cccchhhhhhHHHHHHHHHhhHHHHHHhcCceee--eeEEEEEEEcCchhhhhhhhHHhhcch-HHHHHHHhhhHHHHHH
Confidence            3455544 45666888999999999999999997  11000111112677655332    122 2245789999999999


Q ss_pred             HHHHHHHHHh
Q 009686          357 LGFVLFLVGF  366 (528)
Q Consensus       357 lAl~llligl  366 (528)
                      +|+++.+.-.
T Consensus       197 fallc~lal~  206 (484)
T KOG2921|consen  197 FALLCVLALF  206 (484)
T ss_pred             HHHHHHHHHH
Confidence            9998866544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	528
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	8e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Length = 224

 Score = 78.8 bits (194), Expect = 8e-17
 Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 46/212 (21%)

Query: 271 LLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI 330
           ++     +N         ++  + + +HELGH   AK  GV++     +P       G +
Sbjct: 27  VIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGV 80

Query: 331 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAG 390
             +  I  + E  L++  AGPL  F +G VL +V   F  +     +             
Sbjct: 81  AMMDKIPKEGE--LRIGIAGPLVSFIIGIVLLIVSQFFDININGYPL------------- 125

Query: 391 GFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRK 446
                                L   +   L++   N IPA  +DGGRI  A+    +G  
Sbjct: 126 ---------------------LYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKKYGYL 164

Query: 447 ASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFF 478
            ST++       L L  L   +    ++L+  
Sbjct: 165 KSTKIAANIGKSLALIMLLFGLLSMNIILILV 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 68/457 (14%), Positives = 121/457 (26%), Gaps = 138/457 (30%)

Query: 120 DTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIR------IPKETIDILKDQVFGFDTFFV 173
           D + G       ++              D ++       +      IL  +    D   +
Sbjct: 8   DFETGEHQYQYKDIL---------SVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIM 56

Query: 174 TNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLL--VNPEDDKPVAVVVP 231
           +         LF   L  +  +  +K    ++      YK FL+  +  E  +P      
Sbjct: 57  SKDAVSGTLRLF-WTLLSKQEEMVQKF---VEEVLRINYK-FLMSPIKTEQRQP-----S 106

Query: 232 RKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVP------ALQSNLLSTFDNLNLLTNGL 285
             T          +          VF     NV        L+  LL      N+L +G+
Sbjct: 107 MMTRMYIEQRDRLY------NDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 286 PGALVTALVIGVHELGHILAAKSTGVELGVPY--------------------------FV 319
            G+  T + + V          S  V+  + +                            
Sbjct: 159 LGSGKTWVALDV--------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 320 PSWQIGSFGAIT----------RIRNIVSKR---EDLL---KVAAAGPLAGFSLG-FVLF 362
           P+W   S  +             +R ++  +     LL    V  A     F+L   +L 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 363 L-----VGFIFPPSDGIGIVVD--ASVFHESFLAGGFAKLLLGDVLKDGTP---ISVNPL 412
                 V      +    I +D  +       +     K L  D      P   ++ NP 
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPR 328

Query: 413 VIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT--F 470
            +            SI A  +  G   +  W      +LT  +I+   L+ L        
Sbjct: 329 RL------------SIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKM 374

Query: 471 YWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLF 507
           +  + VF                P   +I   +L L 
Sbjct: 375 FDRLSVF----------------PPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	528
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.91

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=3.4e-24  Score=208.89  Aligned_cols=120  Identities=30%  Similarity=0.444  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccceeeecceEEeccccccCccceeeeEecchhhHHHHHHHHHHHH
Q 009686          286 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  365 (528)
Q Consensus       286 p~aL~Ll~iL~iHElGH~laArr~Gvk~s~P~FIP~i~LgtfGAvi~~~s~~~~R~alfdIAiAGPLAg~llAl~lllig  365 (528)
                      .++++++.++++||+||+++||++|+++..      +.+.+||+++++++.  +|+++++|++|||++|++++++++++.
T Consensus        42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~------i~l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~~~~~~  113 (224)
T 3b4r_A           42 VLFILLFVSVVLHELGHSYVAKKYGVKIEK------ILLLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIVLLIVS  113 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------EEECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccc------EEEEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999999984      455558999988653  458899999999999999998876654


Q ss_pred             hhcCCCCCCcccccccchhhhhhhhhhHHhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHhhhh
Q 009686          366 FIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR  445 (528)
Q Consensus       366 l~l~~s~~~~~~v~~~~f~~s~L~g~la~l~LG~~l~~~~~v~lhPL~~agwinLvltafNLLPigpLDGGrIl~Allgr  445 (528)
                      ...+..             .                    .. ...+.+.+|+|+++++|||+|++|||||||+++++++
T Consensus       114 ~~~~~~-------------~--------------------~~-~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~  159 (224)
T 3b4r_A          114 QFFDIN-------------I--------------------NG-YPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK  159 (224)
T ss_dssp             TTCCCE-------------E--------------------TT-EEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred             HHccCc-------------c--------------------hH-HHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence            321100             0                    00 1124467999999999999999999999999999877


Q ss_pred             hH
Q 009686          446 KA  447 (528)
Q Consensus       446 r~  447 (528)
                      +.
T Consensus       160 ~~  161 (224)
T 3b4r_A          160 KY  161 (224)
T ss_dssp             HH
T ss_pred             cc
Confidence            63

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00