Citrus Sinensis ID: 009730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
Protein Sequence
MMDLSSLPEAQQQNQDYASQSYYDQTQIQSYDQSYYYYYHQQQQHHHAYYQQSYYSTAYQSLPHQQYPETSTLNPPGVSVSANEAAEIAGPGGAQQARQQHSAYYPAAAPLSQLAQFAGTMQAAEGAMGGMHTPGGQFPNKGGCRQGGRPFQGAGHKNFGPRHSNPAASGRSFHGRGRGRGRGGSRHALARGASLSSPNPEYTAAEGAEPADPSPNATEKAAQFLPEPLLSTAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEASERPELAQDGEEKEAAVDVPSETVNDDKEIEAEHPGNADEQPEVPVNESSNPQEEKPRMDRFDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKVVIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPNPVVHTLYGSQGSYLQLGLIYHPKLTKLWPHQLARILNFNTIPWLRQKPLFKMVDRMLLQRHQKLSIR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHcccccccccHHccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHccccccccccccHEEEccccHHHHHHHccHccccccccccccHHHcccccccccccccccccccEEccccHcHHccccccccHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHHHEEEccccHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccEEEEEEEEccEEcccHHHHHHHHccHHHHHHHHHHccccccccHHHHHccccccccccccccccHHHHHHccEEccHHHcccHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mmdlsslpeaqqqnqdyasqsyydqtqiqsydQSYYYYYHQqqqhhhayyqqsyystayqslphqqypetstlnppgvsvsaneaaeiagpggaqqARQQhsayypaaaplsqLAQFAGTMQAAegamggmhtpggqfpnkggcrqggrpfqgaghknfgprhsnpaasgrsfhgrgrgrgrggsrhalargaslsspnpeytaaegaepadpspnatekaaqflpepllstaaagkvepsqqplksaWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEaserpelaqdgeekeaavdvpsetvnddkeieaehpgnadeqpevpvnessnpqeekprmdrfdnrrhgmkrkkrvgqgrkrmkstfegsrqsmeppkpkvviPLICslcnvkcdtkevfgrhlsgkKHIAKLKRFeghqamygpegvqalyppnpvvhtlygsqgsylqlgliyhpkltklwPHQLARILnfntipwlrqkplFKMVDRMLLQRHQKLSIR
Flexible Loop (DISEMBL)
MMDLSSLPEAQQQNQDYASQSYYDQTQIQSYDQSYYYYYHQQQQHHHAYYQQSYYSTAYQSLPHQQYPETSTLNPPGVSVSANEAAEIAGPGGAQQARQQHSAYYPAAAPLSQLAQFAGTMQAAEGAMGGMHTPGGQFPNKGGCRQGGRPFQGAGHKNFGPRHSNPAASGRSFHGRGRGRGRGGSRHALargaslsspnpEYTAAEGAEPADPSPNATEKAAQFLPEPLLSTAAAGKVEPSQQPLKSAWCELCRVDCTSlqileqhrngkrhrknlLRIEELRKAVKPMAEIQTEQKPIAECQTEASERpelaqdgeekeaavdvpsetvNDDKEIEAehpgnadeqpevpvnessnpqeekprmdrfdnrrhgmkrkkrvgqgrkrmkstfegsrqsmeppkpkvVIPLICSLCNVKCDTKEVfgrhlsgkkhIAKLKRFEGHQAMYGPEGVQALYPPNPVVHTLYGSQGSYLQLGLIYHPKLTKLWPHQLARILNFNTIPWLRQKPLFKMVDRMLLQrhqklsir
Low Complexity Region (SEG)
MMDLSSLPEAQQQNQDYAsqsyydqtqiqsydqsyyyyyhqqqqhhhayyqqsyystayqsLPHQQYPETSTLNPPGVSVSANEAAEIagpggaqqarqqHSAYYPAAAPLSQLAQFAGTMQAAEGAMGGMHTPGGQFPNKGGCRQGGRPFQGAGHKNFGPRHSNPaasgrsfhgrgrgrgrggsrhalargasLSSPNPEYTAAEGAEPADPSPNATEKAAQFLPEPLLSTAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEASERPELAQDGEEKEAAVDVPSETVNDDKEIEAEHPGNADEQPEVPVNESSNPQEEKPRMDRFDNRRHgmkrkkrvgqgrkrmkSTFEGSRQSMEPPKPKVVIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPNPVVHTLYGSQGSYLQLGLIYHPKLTKLWPHQLARILNFNTIPWLRQKPLFKMVDRMLLQRHQKLSIR
Disordered region (IsUnstruct)
*********************YYDQTQIQSYDQSYYYYYHQQQQHHHAYYQQSYYSTAYQ******************************************************************************************************************************************************************************************SAWCELCRVDCTSLQILEQH*******************************************************************************************************************************************VVIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPNPVVHTLYGSQGSYLQLGLIYHPKLTKLWPHQLARILNFNTIPWLRQKPLFKMVDRMLL*********
Disordered Region (DISOPRED)
**************************QIQSYDQSYYYYYHQQ**************************************************************************************************************************************************************************************************************WCELCRVDCTSLQILEQHRN*********************************************************************************************************************************************LICSLCNVKCDTKEVFGRHLSGK******************************************************LWPHQLARILNFNTIPWLRQKPLFKMVDRMLLQRH******
Disordered Region (DISEMBL)
********************SYYDQTQIQSYDQSYYYYYHQQQQHHHAYYQQSYYSTAYQSLPHQQYPETSTLNPPGVSVSANEAAE***************AYYPAAAPLSQLAQFAGTMQAAEGAMGGMHTPGGQFPNKGGCRQGGRPFQGAGHKNFGPRHSNPAASGRSFHG********************************************KAAQFLPEPLLSTAAA*********LKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQ**************************VNDDKEIE***************************MDRFDNRRH*****************************KPKVVIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPNPVVHTLYGSQGSYLQLGLIYHPKLTKLWPHQLARILNFNTIPWLRQKPLFKMVDRMLLQRHQKLSIR
Disordered Region (DISPRO)
*****SLP*******DYASQSYYDQTQIQSYDQSYYYYYHQQQQHHHAYYQQSYYSTAYQSLPHQQYPETSTLNPPGVSVSANEAAEIAGPGGAQQARQQHSAYYPAAAPLSQLAQFAGTMQAAEGAMGGMHTPGGQFPNKGGCRQGGRPFQGAGHKNFGPRHSNPAASGRSF**********************************************************************PLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAV***********************************************K*IEA****************************************************************KPKVVIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPNPVVHTLYGSQGSYLQLGLIYHPKLTKLWPHQLARILNFNTIPWLRQKPLFKMVDRMLLQRHQKLS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMDLSSLPEAQQQNQDYASQSYYDQTQIQSYDQSYYYYYHQQQQHHHAYYQQSYYSTAYQSLPHQQYPETSTLNPPGVSVSANEAAEIAGPGGAQQARQQHSAYYPAAAPLSQLAQFAGTMQAAEGAMGGMHTPGGQFPNKGGCRQGGRPFQGAGHKNFGPRHSNPAASGRSFHGRGRGRGRGGSRHALARGASLSSPNPEYTAAEGAEPADPSPNATEKAAQFLPEPLLSTAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEASERPELAQDGEEKEAAVDVPSETVNDDKEIEAEHPGNADEQPEVPVNESSNPQEEKPRMDRFDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKVVIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPNPVVHTLYGSQGSYLQLGLIYHPKLTKLWPHQLARILNFNTIPWLRQKPLFKMVDRMLLQRHQKLSIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	527
255576046	725	conserved hypothetical protein [Ricinus	0.548	0.398	0.543	7e-83
147812148	618	hypothetical protein VITISV_009309 [Viti	0.489	0.417	0.549	6e-65
147819081	628	hypothetical protein VITISV_000640 [Viti	0.370	0.310	0.437	9e-35
297734533	679	unnamed protein product [Vitis vinifera]	0.362	0.281	0.424	5e-34
226507156	516	uncharacterized protein LOC100277947 [Ze	0.616	0.629	0.299	7e-23
414867732	375	TPA: hypothetical protein ZEAMMB73_41203	0.394	0.554	0.311	4e-22
413955253	396	hypothetical protein ZEAMMB73_384238 [Ze	0.398	0.530	0.285	4e-18
226491021	396	uncharacterized protein LOC100272823 [Ze	0.398	0.530	0.285	4e-18
356495137	446	PREDICTED: uncharacterized protein LOC10	0.442	0.522	0.285	3e-17
356526483	302	PREDICTED: uncharacterized protein LOC10	0.248	0.433	0.248	2e-10

>gi|255576046|ref|XP_002528918.1| conserved hypothetical protein [Ricinus communis] gi|223531620|gb|EEF33447.1| conserved hypothetical protein [Ricinus communis]

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 169/311 (54%), Positives = 210/311 (67%), Gaps = 22/311 (7%)

Query: 173 FHGRGRGRGRGGSRHALARGASLSSPNPEYTAAEGAEPADPSPNATEKAAQFLPEPLLST 232
             GRG G+G+  SR     GA+ +S  PE +AA      DP+  A E AAQ  P P    
Sbjct: 384 LRGRGHGKGKAHSRRFKPHGAASTSSYPEPSAAN----EDPAAVAVE-AAQSAPAP---- 434

Query: 233 AAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEI 292
               K+ P  QP + AWCELCRVDCTS+++LEQH+NGKRH+KNLLRIEEL+KAVK   EI
Sbjct: 435 ---EKLAPKHQPAQIAWCELCRVDCTSVEVLEQHKNGKRHKKNLLRIEELKKAVKFGEEI 491

Query: 293 QTEQKPIAECQTEASERPELAQDGEEKEAAVDVPSETVNDDKEIEAEHPGNADEQPEVPV 352
           + +Q+ I   + E  + P++AQDGEE++ A ++  E  ND+  +  +   N  E+ EVPV
Sbjct: 492 KNDQETIINTKPEDYQEPQVAQDGEEQKTAENLTVEATNDEHIMVRDLQDNTGEKSEVPV 551

Query: 353 NESSNPQEEKPRMDRFDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKVVIPLIC 412
            E S+ Q  KP+M+ FDNRR GMKRK + G+G KRMK T E  R+ +EPPKPKVV+PLIC
Sbjct: 552 EELSDQQGMKPKMNLFDNRRRGMKRKIKGGRGGKRMK-TSETHRRPVEPPKPKVVVPLIC 610

Query: 413 SLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPNPVVHT------- 465
            LCNVKCDT+EV  RHLSGKKHIAKLKRFEGHQA+YGP G+QALYPPNPV  T       
Sbjct: 611 DLCNVKCDTREVLDRHLSGKKHIAKLKRFEGHQAIYGPTGLQALYPPNPVAQTHLVSQGP 670

Query: 466 --LYGSQGSYL 474
              Y  QGS+L
Sbjct: 671 QPFYAPQGSFL 681

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812148|emb|CAN77034.1| hypothetical protein VITISV_009309 [Vitis vinifera]

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 150/273 (54%), Positives = 183/273 (67%), Gaps = 15/273 (5%)

Query: 206 EGAEPADPSPNATEKAAQFLPEPLLSTAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQ 265
           E  EP+   P  + +A   L E   ST A G   P+ QP + AWCELCRVDCTSL+ILEQ
Sbjct: 79  EEGEPSGVLPEESGEAV-VLAETSPSTVAPGDSAPNWQPSQVAWCELCRVDCTSLEILEQ 137

Query: 266 HRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEASERPELAQDGEEKEAAV-- 323
           H+NGKRH+KNL RIEEL+ A     EI  E  P+ E + +    PE+AQ+GEE+      
Sbjct: 138 HKNGKRHKKNLQRIEELKSANLTGTEIPNE--PVGESKFQ----PEIAQEGEEESDEEGE 191

Query: 324 -----DVPSETVNDDKEIEAEHPGNADEQPEVPVNESSNPQEEKPRMDRFDNRRHGMKRK 378
                ++PSE + ++ E+  E   +  EQPE P+ E  + Q  KPRM+ FDN RHGMKR+
Sbjct: 192 ENPEKNLPSEAIANENEMVGEQKNDIVEQPEKPMEERPDSQVGKPRMEHFDNWRHGMKRR 251

Query: 379 KRVGQGRKRMKSTFEGSRQSMEPPKPKVVIPLICSLCNVKCDTKEVFGRHLSGKKHIAKL 438
            R G+   +    FE  R+S+EPPKPKVVIPLIC LCNVKCDT+EVF RHLSGKKHIAKL
Sbjct: 252 MRGGR-GGKRMKMFEAPRRSIEPPKPKVVIPLICDLCNVKCDTQEVFDRHLSGKKHIAKL 310

Query: 439 KRFEGHQAMYGPEGVQALYPPNPVVHTLYGSQG 471
           KRFEGHQAMYGP G+QALYPPNP+  TL   QG
Sbjct: 311 KRFEGHQAMYGPMGLQALYPPNPIAQTLLHPQG 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819081|emb|CAN65350.1| hypothetical protein VITISV_000640 [Vitis vinifera]

 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/215 (43%), Positives = 121/215 (56%), Gaps = 20/215 (9%)

Query: 248 AWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEAS 307
           AWCELCRVDC +L+ILEQH+NGKRH+KNLL  +EL+   K +  +Q EQ PI++      
Sbjct: 279 AWCELCRVDCNTLEILEQHKNGKRHKKNLLVYQELQNLNKLITGVQNEQMPISDF----- 333

Query: 308 ERPELAQDGEEKEAAVDVPSE-TVNDDKEIEAEHPGNADEQPEVPVNESSNPQEEKPRMD 366
            +P+L Q      +    PS+ T  +  E E +      E    P  E    QE K RMD
Sbjct: 334 -KPQLIQSERVGGSEDXQPSQGTGANGTEKEQQTEAEKSEVSAQPTEE----QERKARMD 388

Query: 367 RFDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKVVIPLICSLCNVKCDTKEVFG 426
            F     G+KRK R                +  EPPKPK +IPLIC LCNVKC+++ VF 
Sbjct: 389 HFQAPGRGLKRKMR--------GGRGGKRMRQFEPPKPKEMIPLICELCNVKCESQVVFD 440

Query: 427 RHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPNP 461
            HL+GKKH + LKRF G+QA+     +QAL P NP
Sbjct: 441 SHLAGKKHHSNLKRFHGYQAIIA-GALQALIPSNP 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 124/219 (56%), Gaps = 28/219 (12%)

Query: 248 AWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEAS 307
           AWCELCRVDC +L+ILEQH+NGKRH+KNLL  +EL+   K +  +Q EQ PI++      
Sbjct: 121 AWCELCRVDCNTLEILEQHKNGKRHKKNLLVYQELQNLNKLITGVQNEQMPISDF----- 175

Query: 308 ERPELAQD-----GEEKEAAVDVPSETVNDDKEIEAEHPGNADEQPEVPVNESSNPQEEK 362
            +P+L Q       E+K+ +    +     +++ EAE       QP       +  QE K
Sbjct: 176 -KPQLIQSERVGGSEDKQPSQGTGANGTEKEQQTEAEK-SEVSAQP-------TEEQERK 226

Query: 363 PRMDRFDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKVVIPLICSLCNVKCDTK 422
            RMD F     G+KRK R                +  EPPKPK +IPLIC LCNVKC+++
Sbjct: 227 ARMDHFQAPGRGLKRKMR--------GGRGGKRMRQFEPPKPKEMIPLICELCNVKCESQ 278

Query: 423 EVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPNP 461
            VF  HL+GKKH + LKRF G+QA+     +QAL P NP
Sbjct: 279 VVFDSHLAGKKHHSNLKRFHGYQAIIA-GALQALIPSNP 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226507156|ref|NP_001144857.1| uncharacterized protein LOC100277947 [Zea mays] gi|195647960|gb|ACG43448.1| hypothetical protein [Zea mays]

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 174/407 (42%), Gaps = 82/407 (20%)

Query: 111 LSQLAQFAGTMQAAEGAMGGM-----HTPGGQFPNK-GGCRQGGRPFQGAGHKNFGPRHS 164
           LSQ   FA ++  +   +G +       P  Q P   GG  +GG P  G G +   P + 
Sbjct: 86  LSQPTIFAASIGWSGHGVGHLPYYDPQYPPAQHPTAVGGVSRGGEPSHGGG-RGLSPMYH 144

Query: 165 --NPAASGRSFHGRGRGRGRGGSRHALARGASLSSPNPEYTAAEGAEPADPSPNATEKAA 222
                A   S  GRGRG G   S   LA GAS  S   E      A+P       T  A 
Sbjct: 145 PLTWNAGITSPCGRGRGHGNKSSDRQLAVGASSGSSASE------AQPV------TVCAP 192

Query: 223 QFLPEPLLSTAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRNGKRHRK------NL 276
             + +        G V P+      AWC+LCRV C S +ILEQH+NGK+H++      N 
Sbjct: 193 AHVVQATTINFTRGTVVPA------AWCDLCRVGCNSKEILEQHKNGKKHKRTVQRMQNF 246

Query: 277 LRIEELRKAVKPMAEIQTEQKPIAE----CQTEASER-PELAQD---GEEKEAA------ 322
            R++ +  A+  M    +    +AE    C + A    P L      GE K+ A      
Sbjct: 247 ARLQGMTPAIADMGARSSTSSQLAEVEGPCPSNAVHMVPPLGSTSLGGEHKDLATENVVA 306

Query: 323 ----VDVPSETVNDDKEIEAEHPGNADEQPEV------------PVNES----------- 355
               V +   T +  K+  A H        +             P NE            
Sbjct: 307 SVSGVQITEVTCSSSKQNTAHHTTAVGHSVQAHVELHVAVQAYQPSNEMKDGGEAAPNAT 366

Query: 356 --SNPQEEKPRMDRFDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKVVIPLICS 413
             SN Q  + RMD   N+    +++ RVG+  K+++ + E  RQ  E  + +   PL+C+
Sbjct: 367 VPSNAQLVEARMDVNGNKTGPKRKRTRVGREGKKLRVS-EARRQRPERVREQ---PLVCT 422

Query: 414 LCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPN 460
           +CNV CDT+ VF  HL GKKH ++LKR +G   ++GP  + A  PPN
Sbjct: 423 ICNVTCDTRAVFDIHLGGKKHQSRLKRSQGPDMLFGP--LVARVPPN 467

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414867732|tpg|DAA46289.1| TPA: hypothetical protein ZEAMMB73_412034 [Zea mays]

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 124/263 (47%), Gaps = 55/263 (20%)

Query: 247 SAWCELCRVDCTSLQILEQHRNGKRHRK------NLLRIEELRKAVKPMAEIQTEQKPIA 300
           +AWC+LCRV C S +ILEQH+NGK+H++      N  R++ +  A+  M    +    +A
Sbjct: 70  AAWCDLCRVGCNSKEILEQHKNGKKHKRTVQRMQNFARLQGMTPAIADMGARSSTSSQLA 129

Query: 301 E----CQTEASER-PELAQD---GEEKEAA----------VDVPSETVNDDKEIEAEHPG 342
           E    C + A    P +      GE K+ A          V +   T +  K+  A H  
Sbjct: 130 EVEGPCPSNAVHMVPSIGSTSFGGEHKDLATENVVASVSGVQITEVTCSSSKQNTAHHTT 189

Query: 343 NADEQPEV------------PVNES-------------SNPQEEKPRMDRFDNRRHGMKR 377
                 +             P NE              SN Q  + RMD   N+    ++
Sbjct: 190 AVGHSVQAHVELHVAVQAYQPSNEMKDGGEAAPNATVPSNAQLVEARMDVNGNKTGPKRK 249

Query: 378 KKRVGQGRKRMKSTFEGSRQSMEPPKPKVVIPLICSLCNVKCDTKEVFGRHLSGKKHIAK 437
           + RVG+G K+++ + E  RQ  E  + +   PL+C++CNV CDT+ VF  HL GKKH ++
Sbjct: 250 RTRVGRGGKKLRVS-EARRQRPERVREQ---PLVCNICNVTCDTRAVFDIHLGGKKHQSR 305

Query: 438 LKRFEGHQAMYGPEGVQALYPPN 460
           LKR +G   ++GP  + A  PPN
Sbjct: 306 LKRSQGPDMLFGP--LVARVPPN 326

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413955253|gb|AFW87902.1| hypothetical protein ZEAMMB73_384238 [Zea mays]

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 74/284 (26%)

Query: 231 STAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMA 290
           S++  G V P+      AWC++C V C S +ILEQH+NGKRH++++ R+++       MA
Sbjct: 68  SSSTRGTVVPA------AWCDICHVGCNSKEILEQHKNGKRHKRSVQRMQD-------MA 114

Query: 291 EIQTEQKPIAECQTEASER--------------PELAQ---DGEEKEAA----------- 322
            +Q     IA+    +S +              P L      GE K+ A           
Sbjct: 115 RLQGTTPAIADMGAPSSSQLAEVEGPSRSVHMVPPLGSTSLSGEHKDLAPENVGASVYGV 174

Query: 323 --VDVPSETVNDDKE-------------------IEAEHPGN-ADEQPEVPVNES--SNP 358
              +VP  +   +K                    ++A  P N   +  E P N +  SN 
Sbjct: 175 QITEVPGSSSKQNKTHHTSTVGHGVEAQVELHVAVQACQPSNEMKDGGEAPPNATGPSNA 234

Query: 359 QEEKPRMDRFDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKVVI--PLICSLCN 416
           Q  + RM    N     ++    G+GRK+++ +     Q+ +  +P+ V   PL+C++CN
Sbjct: 235 QLVEARMGVNGNNNGSKRKPTGAGRGRKKLRVS-----QAPQQRRPERVREQPLVCTICN 289

Query: 417 VKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPN 460
             CDT+ VF  HL GKKH ++LKR +G   ++GP  +    PPN
Sbjct: 290 AICDTRAVFDIHLVGKKHQSRLKRSQGPDVLFGP--LVGHIPPN 331

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491021|ref|NP_001140748.1| uncharacterized protein LOC100272823 [Zea mays] gi|194700900|gb|ACF84534.1| unknown [Zea mays]

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 74/284 (26%)

Query: 231 STAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMA 290
           S++  G V P+      AWC++C V C S +ILEQH+NGKRH++++ R+++       MA
Sbjct: 68  SSSTRGTVVPA------AWCDICHVGCNSKEILEQHKNGKRHKRSVQRMQD-------MA 114

Query: 291 EIQTEQKPIAECQTEASER--------------PELAQ---DGEEKEAA----------- 322
            +Q     IA+    +S +              P L      GE K+ A           
Sbjct: 115 RLQGTTPAIADMGAPSSSQLAEVEGPSRSVHMVPPLGSTSLSGEHKDLAPENVGASVYGV 174

Query: 323 --VDVPSETVNDDKE-------------------IEAEHPGN-ADEQPEVPVNES--SNP 358
              +VP  +   +K                    ++A  P N   +  E P N +  SN 
Sbjct: 175 QITEVPGSSSKQNKTHHTSTVGHGVEAQVELHVAVQACQPSNEMKDGGEAPPNATGPSNA 234

Query: 359 QEEKPRMDRFDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKVVI--PLICSLCN 416
           Q  + RM    N     ++    G+GRK+++ +     Q+ +  +P+ V   PL+C++CN
Sbjct: 235 QLVEARMGVNGNNNGSKRKPTGAGRGRKKLRVS-----QAPQQRRPERVREQPLVCTICN 289

Query: 417 VKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGPEGVQALYPPN 460
             CDT+ VF  HL GKKH ++LKR +G   ++GP  +    PPN
Sbjct: 290 AICDTRAVFDIHLVGKKHQSRLKRSQGPDVLFGP--LVGHIPPN 331

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495137|ref|XP_003516437.1| PREDICTED: uncharacterized protein LOC100794880 [Glycine max]

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 23/256 (8%)

Query: 228 PLLSTAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVK 287
           P++S   A +V+P   P K   CE+C+V+C S +ILEQH+ GK+H+KN+   EEL++   
Sbjct: 125 PVVSNVPA-RVQPPVPPRK-VCCEICKVECNSPEILEQHKVGKKHQKNMRVHEELQRR-N 181

Query: 288 PMAEIQTEQKPIAECQTEASERPELAQDGEEK-EAAVDVPSETVNDDKEIEAEHPGNADE 346
            + E Q+ + P +  Q   +++P+  Q+ E+      ++ S  + ++ E E +   N   
Sbjct: 182 AINEQQSGEIPTS--QLNLTDQPKEVQESEKNGHPTENMGSGVIINNHEEEIQLQNNVGN 239

Query: 347 QPEVPVNESSNPQEEKPRMDRFDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKV 406
             EVP         E P     DN     + +    + +      +  +    +P +P  
Sbjct: 240 MSEVPA--------EVPEGKTVDNS--AARGRGLKRKKKGGKGGKYMRTNDGSKPVEPAQ 289

Query: 407 VIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEG----HQAMYGP-EGVQALYPPNP 461
            +   C LC+VKC+++ V+  H++GKKH++KL+R        QA+ G   G+QA+YPP+ 
Sbjct: 290 TMSFRCELCDVKCESQVVYQSHMTGKKHLSKLRRASSGVGQQQALSGALSGLQAVYPPD- 348

Query: 462 VVHTLYGSQGSYLQLG 477
            ++ L  +  + +Q G
Sbjct: 349 -INALSNAINAQVQQG 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526483|ref|XP_003531847.1| PREDICTED: uncharacterized protein LOC100814580 [Glycine max]

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 66/197 (33%)

Query: 248 AWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEAS 307
           A+CE+C+++CTS  +L+QH+ GK+H+KN   +E+LR+++ P            + Q   S
Sbjct: 166 AFCEVCKIECTSKDVLDQHKLGKKHKKN---VEKLRESLTP-----------TQVQPSVS 211

Query: 308 ERPELAQDGEEKEAAVDVPSETVNDDKEIEAEHPGNADEQPEVPVNESSNPQEEKPRMDR 367
            +P +                                   P++P ++S +    K +  +
Sbjct: 212 SKPLIG----------------------------------PQLPDDKSKSTSGNKSKRKK 237

Query: 368 FDNRRHGMKRKKRVGQGRKRMKSTFEGSRQSMEPPKPKVVIPLICSLCNVKCDTKEVFGR 427
            +      K+K +V +G         G+  S            IC++CNV C+++ V+  
Sbjct: 238 VETAEDLEKKKMKVLEG---------GAAASAVK---------ICAICNVVCNSETVYNY 279

Query: 428 HLSGKKHIAKLKRFEGH 444
           HL+G+KH A LK+  GH
Sbjct: 280 HLAGQKHAAMLKKASGH 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	527
UNIPROTKB|E1C1I3	229	ZMAT4 "Uncharacterized protein	0.148	0.340	0.283	0.00064
UNIPROTKB|F1MWK5	970	F1MWK5 "Uncharacterized protei	0.138	0.075	0.294	0.00097

UNIPROTKB|E1C1I3 ZMAT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 84 (34.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
 Identities = 23/81 (28%), Positives = 37/81 (45%)

Query:   209 EPADPSPNATEKAAQFLPEPLLSTAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRN 268
             EP  P+  AT +    L +P      A    P  +     +C+LC     +  + +QH +
Sbjct:   109 EP--PALKATAETLGSLKQPRADRPPAAS-PPQPRRDSDRYCQLCAAWFNNPVMAQQHYD 165

Query:   269 GKRHRKNLLRIEELRKAVKPM 289
             GK+H+KN  R E L +  K +
Sbjct:   166 GKKHKKNAARAELLEQLGKTL 186

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MWK5 F1MWK5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 100 (40.3 bits), Expect = 0.00097, Sum P(3) = 0.00097
 Identities = 23/78 (29%), Positives = 37/78 (47%)

Query:   198 PNPEYTAAEGAEPADPSPNATEKAAQFLPEPLLSTAAAGKVEPSQQPLKSAWCELCRVDC 257
             P P  ++  G     PS + T   A+ LP P  S     +  P  QPL   +C++C++ C
Sbjct:   196 PKPVDSSQWGGPVGSPSASCTNSVAKKLPVP--SKLPRPRTGP--QPLPLHYCDICKISC 251

Query:   258 TS-LQILEQHRNGKRHRK 274
                 Q   +H  G++H+K
Sbjct:   252 AGPQQTYREHLEGQKHKK 269

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	527
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	8e-05
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	2e-04
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	0.001
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	0.001

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 39.4 bits (93), Expect = 8e-05
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 249 WCELCRVDCTSLQILEQHRNGKRH 272
           +CELC V  TS   L+ H  GK+H
Sbjct: 2   YCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 410 LICSLCNVKCDTKEVFGRHLSGKKH 434
             C LCNV   ++     HL GKKH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 249 WCELCRVDCTSLQILEQHRNGKRHRKNLLR 278
           +C+LC V  T    +E H  GK+H+KN+ +
Sbjct: 5   YCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 412 CSLCNVKCDTKEVFGRHLSGKKHIAKLKRF 441
           C LCNV    +     HL GKKH   +K+ 
Sbjct: 6   CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	527
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	99.82
KOG2636	497	consensus Splicing factor 3a, subunit 3 [RNA proce	99.78
PF11931	196	DUF3449: Domain of unknown function (DUF3449); Int	99.75
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.36
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.32
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.14
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.03
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.85
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.6
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	96.72
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	96.71
KOG4727	193	consensus U1-like Zn-finger protein [General funct	96.59
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	96.46
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	95.74
KOG4727	193	consensus U1-like Zn-finger protein [General funct	95.68
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	95.06
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	94.64
PLN02748	468	tRNA dimethylallyltransferase	94.54
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	94.03
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.96
PF14968	336	CCDC84: Coiled coil protein 84	93.93
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	93.89
KOG3032	264	consensus Uncharacterized conserved protein [Funct	93.57
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	93.46
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	93.26
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	93.1
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	93.06
PLN02748	468	tRNA dimethylallyltransferase	93.01
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	92.92
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	92.65
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	92.45
KOG1146	1406	consensus Homeobox protein [General function predi	92.19
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	92.17
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	92.05
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	91.45
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	91.37
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.51
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	89.99
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	89.44
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	89.34
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	89.15
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	89.13
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	88.93
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	88.92
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	88.67
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	88.37
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	88.14
smart00355	26	ZnF_C2H2 zinc finger.	87.87
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	87.71
KOG3032	264	consensus Uncharacterized conserved protein [Funct	87.46
KOG3262	215	consensus H/ACA small nucleolar RNP component GAR1	87.05
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	84.69
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	84.18
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	83.65
KOG3262	215	consensus H/ACA small nucleolar RNP component GAR1	82.9
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	82.32
PRK10590	456	ATP-dependent RNA helicase RhlE; Provisional	81.66
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	80.54
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	80.49
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	80.09

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=99.82  E-value=8.5e-22  Score=201.47  Aligned_cols=165  Identities=21%  Similarity=0.223  Sum_probs=131.0

Q ss_pred             CcCceeccccccccCCHHHHHHhhcchHHHHHHHHHHHHhhhcCCccccccccchhhhchhhhh-cCCcccccccccccc
Q 009730          244 PLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEAS-ERPELAQDGEEKEAA  322 (527)
Q Consensus       244 p~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~~~K~~~~~e~~ste~~~IAe~p~E~~-~~P~l~~d~E~~~tk  322 (527)
                      ..+.+||++|+..|..-.|++.|+.||+|.|+.+..++                 ++.  .|.. .+.-..++.++.+|+
T Consensus       235 ~~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~-----------------~v~--~Ey~l~r~~kyl~d~~s~tr  295 (470)
T COG5188         235 WFPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE-----------------FVY--SEYVLHRYLKYLGDPVSETR  295 (470)
T ss_pred             hccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH-----------------HHH--HHHHHHHHHHHhCChhHHHH
Confidence            34678999999999999999999999999999776553                 121  2343 333445788899999


Q ss_pred             cccCCccccchhhhhhcCCCCCCC--CC-CcCCCCCCCc--cccccccccccccccccccccccCCCcccccc-cccCCC
Q 009730          323 VDVPSETVNDDKEIEAEHPGNADE--QP-EVPVNESSNP--QEEKPRMDRFDNRRHGMKRKKRVGQGRKRMKS-TFEGSR  396 (527)
Q Consensus       323 vNveska~ltsher~~Elq~n~~~--k~-~~p~ee~S~~--Qe~k~~e~~~yN~~~GpKrKlp~GwdGK~I~~-t~~~~~  396 (527)
                      +||.+..++|+.||-+|.......  ++ ..+++...++  +.++++|+++||    +. +||+||||+|||| ++++|+
T Consensus       296 s~V~r~la~ta~ER~aei~~l~r~~~~~at~S~e~EGaeq~d~eQ~DE~~~~k----~f-dmPLG~DG~PmP~WL~klhg  370 (470)
T COG5188         296 SLVLRSLAITAKERKAEISLLSRRKKQPATKSSEKEGAEQVDGEQRDEHVSGK----SF-DMPLGPDGLPMPRWLCKLHG  370 (470)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhccCCCchhhcccccccccccchhhccC----cc-cCCCCCCCCCCchHHHHhcC
Confidence            999999999999998887665552  11 1111111122  233566889988    66 8999999999999 999999


Q ss_pred             CCCCCCCCCccCceecccc-cccccCHHHHHHhhchhHHHHHHHhc
Q 009730          397 QSMEPPKPKVVIPLICSLC-NVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       397 q~vE~~~pk~~~~l~CEIC-NV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      +..|         |.|||| |.+++++..|+.||+..+|+.-|+.+
T Consensus       371 Ld~e---------f~CEICgNyvy~GR~~FdrHF~E~rHiygl~cl  407 (470)
T COG5188         371 LDIE---------FECEICGNYVYYGRDRFDRHFEEDRHIYGLECL  407 (470)
T ss_pred             CCcc---------eeeeecccccccchHHHHhhhhhhhhhhheeec
Confidence            9888         999999 89999999999999999999999876

>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=99.78  E-value=1.3e-20  Score=196.79  Aligned_cols=172  Identities=20%  Similarity=0.287  Sum_probs=134.4

Q ss_pred             CcCceeccccccccCCHHHHHHhhcchHHHHHHHHHHHHhhh-----cCCcccccccc---------chhhhchhhhh-c
Q 009730          244 PLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKA-----VKPMAEIQTEQ---------KPIAECQTEAS-E  308 (527)
Q Consensus       244 p~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~~~K~-----~~~~e~~ste~---------~~IAe~p~E~~-~  308 (527)
                      ....++|..|...+..-.++..|+.|+.|-++.+..++..+.     .+.++..++..         .+||.  .|+. +
T Consensus       246 s~Eel~~~g~erlk~al~alglk~gGt~~~ra~rlf~Tk~~~l~~L~~~~~~kn~s~~~~~~~~~~~keia~--tEa~v~  323 (497)
T KOG2636|consen  246 SVEELYCLGCERLKSALTALGLKCGGTLHERAQRLFSTKSKSLSHLDTKLFAKNPSKKGHRREKERNKEIAR--TEALVK  323 (497)
T ss_pred             HHHHHHhhchhHHHHHHHHHHHhcCCeecHHHHhhhhhcCcchhhhhhhhhccCcccchhhhhhhccchHHH--HHHHHH
Confidence            345788999999988888999999999999988777653222     11122222222         36777  6777 7


Q ss_pred             CCcccccccccccccccCCccccchhhhhhcCCCCCCCCCCcCCCCCCCccccccccccccccccccccccccCCCcccc
Q 009730          309 RPELAQDGEEKEAAVDVPSETVNDDKEIEAEHPGNADEQPEVPVNESSNPQEEKPRMDRFDNRRHGMKRKKRVGQGRKRM  388 (527)
Q Consensus       309 ~P~l~~d~E~~~tkvNveska~ltsher~~Elq~n~~~k~~~p~ee~S~~Qe~k~~e~~~yN~~~GpKrKlp~GwdGK~I  388 (527)
                      .....+++++..|..||.++.+.|.-+++.|-++-+.          +...++.|.++.+||    || +||+|||||||
T Consensus       324 k~~~iL~eeR~~t~env~rKq~~ta~e~E~E~~eq~~----------~~~e~~~de~~~~yn----p~-~lPLGwDGkPi  388 (497)
T KOG2636|consen  324 KLLAILAEERKATRENVVRKQARTAEEREEEEEEQSD----------SDEESDDDEEELIYN----PK-NLPLGWDGKPI  388 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhc----------cccccccchhhccCC----cc-cCCCCCCCCcC
Confidence            7777789999999999999999998877554322111          112223445689999    88 99999999999


Q ss_pred             cc-cccCCCCCCCCCCCCccCceecccc-cccccCHHHHHHhhchhHHHHHHHhc
Q 009730          389 KS-TFEGSRQSMEPPKPKVVIPLICSLC-NVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       389 ~~-t~~~~~q~vE~~~pk~~~~l~CEIC-NV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      || ++++|++..+         |.|||| |.+++++..|++||+.++|+.-|+.+
T Consensus       389 PyWLyKLHGL~~e---------y~CEICGNy~Y~GrkaF~RHF~EwRH~hGmrCL  434 (497)
T KOG2636|consen  389 PYWLYKLHGLDIE---------YNCEICGNYVYKGRKAFDRHFNEWRHAHGMRCL  434 (497)
T ss_pred             chHHHhhcCCCcc---------cceeeccCccccCcHHHHHHhHHHHHhhcceec
Confidence            99 9999998877         999999 89999999999999999999999887

>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised

Probab=99.75  E-value=3.6e-20  Score=177.60  Aligned_cols=120  Identities=17%  Similarity=0.255  Sum_probs=26.8

Q ss_pred             cCCcccccccccccccccCCccccchhhhhhcCCCCCC-----CCCCcCCCCCCCccccccccccccccccccccccccC
Q 009730          308 ERPELAQDGEEKEAAVDVPSETVNDDKEIEAEHPGNAD-----EQPEVPVNESSNPQEEKPRMDRFDNRRHGMKRKKRVG  382 (527)
Q Consensus       308 ~~P~l~~d~E~~~tkvNveska~ltsher~~Elq~n~~-----~k~~~p~ee~S~~Qe~k~~e~~~yN~~~GpKrKlp~G  382 (527)
                      ......+..++.+|+.||+|+.++|.+|++.|...+..     +......+..+++.++++.++.+||    ++ ++|+|
T Consensus         8 ~~~~~~L~~~~~~T~~~verk~a~T~~E~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n----p~-~lPLG   82 (196)
T PF11931_consen    8 HKLCELLSEEREDTKENVERKQARTEEERQAEEEYEEEIYSEDEYEEEEEEEESEEDSDDDEEEKIYN----PL-NLPLG   82 (196)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHT--HHHHHHHHHHTS-SS-TT--SS--B------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhhhhhccccccccccccccccccccccccccCC----cc-cCCCC
Confidence            44555688899999999999999999999884222111     1111111112233334555788999    77 99999


Q ss_pred             CCcccccc-cccCCCCCCCCCCCCccCceecccc-cccccCHHHHHHhhchhHHHHHHHhc
Q 009730          383 QGRKRMKS-TFEGSRQSMEPPKPKVVIPLICSLC-NVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       383 wdGK~I~~-t~~~~~q~vE~~~pk~~~~l~CEIC-NV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      |||||||| ++++|++.++         |.|||| |.+|.++.+|++||++++|+.-|+.+
T Consensus        83 ~DGkPIPyWLYKLhGL~~e---------y~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcL  134 (196)
T PF11931_consen   83 WDGKPIPYWLYKLHGLGVE---------YKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCL  134 (196)
T ss_dssp             -------------------------------------------------------------
T ss_pred             CCCCcccHHHHHHhCCCCe---------eeeEeCCCcceecHHHHHHhcChhHHHccChhc
Confidence            99999999 9999999998         999999 99999999999999999999999887

It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.36  E-value=3.6e-07  Score=63.92  Aligned_cols=33  Identities=36%  Similarity=0.621  Sum_probs=30.8

Q ss_pred             ceecccccccccCHHHHHHhhchhHHHHHHHhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      .|+|++|++.|++...+..|++|+||..++++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~~   35 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR   35 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHcC
Confidence            499999999999999999999999999999763

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.32  E-value=3.5e-07  Score=60.14  Aligned_cols=25  Identities=32%  Similarity=0.763  Sum_probs=24.5

Q ss_pred             eecccccccccCHHHHHHhhchhHH
Q 009730          410 LICSLCNVKCDTKEVFGRHLSGKKH  434 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~GKKH  434 (527)
                      |+|+||++.|+++..|..|++|+||
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7999999999999999999999999

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.14  E-value=1.6e-06  Score=60.63  Aligned_cols=32  Identities=38%  Similarity=0.731  Sum_probs=30.3

Q ss_pred             ceeccccccccCCHHHHHHhhcchHHHHHHHH
Q 009730          247 SAWCELCRVDCTSLQILEQHRNGKRHRKNLLR  278 (527)
Q Consensus       247 ~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLka  278 (527)
                      .++|++|++.|++...+.+|+.|++|++++++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            58999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.03  E-value=3.2e-06  Score=55.58  Aligned_cols=25  Identities=32%  Similarity=0.692  Sum_probs=24.3

Q ss_pred             eeccccccccCCHHHHHHhhcchHH
Q 009730          248 AWCELCRVDCTSLQILEQHRNGKRH  272 (527)
Q Consensus       248 ~~CeVCqV~cnSe~vy~sHl~GKKH  272 (527)
                      |+|++|++.|+++.+|.+|+.|+||
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            6899999999999999999999998

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.85  E-value=9.4e-06  Score=54.97  Aligned_cols=26  Identities=23%  Similarity=0.588  Sum_probs=25.2

Q ss_pred             eecccccccccCHHHHHHhhchhHHH
Q 009730          410 LICSLCNVKCDTKEVFGRHLSGKKHI  435 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~GKKH~  435 (527)
                      |+|++|++.|+++.+|+.|++|++|.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            89999999999999999999999995

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.60  E-value=3.3e-05  Score=52.33  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=25.2

Q ss_pred             eeccccccccCCHHHHHHhhcchHHH
Q 009730          248 AWCELCRVDCTSLQILEQHRNGKRHR  273 (527)
Q Consensus       248 ~~CeVCqV~cnSe~vy~sHl~GKKHk  273 (527)
                      ++|++|++.|+++.++..|+.|++|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            68999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.72  E-value=0.0013  Score=48.88  Aligned_cols=31  Identities=29%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             eecccccccc--cCHHHHHHhhchhHHHHHHHh
Q 009730          410 LICSLCNVKC--DTKEVFGRHLSGKKHIAKLKR  440 (527)
Q Consensus       410 l~CEICNV~C--nS~~v~~~Hl~GKKH~~kLKk  440 (527)
                      |||+.|++.+  ++..+-..|..|+||+.++++
T Consensus         4 yyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    4 YYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             eecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            9999999999  566777999999999999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.71  E-value=0.0015  Score=48.61  Aligned_cols=32  Identities=31%  Similarity=0.631  Sum_probs=21.0

Q ss_pred             ceecccccccc--CCHHHHHHhhcchHHHHHHHH
Q 009730          247 SAWCELCRVDC--TSLQILEQHRNGKRHRKNLLR  278 (527)
Q Consensus       247 ~~~CeVCqV~c--nSe~vy~sHl~GKKHkKnLka  278 (527)
                      ..||+.|++.+  .+..+-+.|..|.||+.++++
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            58999999999  466777999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=96.59  E-value=0.0016  Score=63.03  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=31.7

Q ss_pred             cCceecccccccccCHHHHHHhhchhHHHHHHHhc
Q 009730          407 VIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       407 ~~~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      ..-|+|.|||-++.-..+|-.|+|||+|+.+|-.+
T Consensus        73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            46699999999999999999999999999999544

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.0052  Score=66.76  Aligned_cols=35  Identities=26%  Similarity=0.612  Sum_probs=33.5

Q ss_pred             ceeccccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 009730          247 SAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEE  281 (527)
Q Consensus       247 ~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~  281 (527)
                      .++|-||..+|.|+.++..|-+.|||+++|..|..
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrq  326 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQ  326 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHH
Confidence            39999999999999999999999999999999986

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=95.74  E-value=0.012  Score=66.50  Aligned_cols=33  Identities=21%  Similarity=0.572  Sum_probs=30.8

Q ss_pred             CCcCceeccccccccCCHHHHHHhhcchHHHHH
Q 009730          243 QPLKSAWCELCRVDCTSLQILEQHRNGKRHRKN  275 (527)
Q Consensus       243 kp~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKn  275 (527)
                      ...+.++|++|+++|+....+..|+.+.||+++
T Consensus       189 ~laqL~~~kw~k~~a~G~qs~re~lr~~r~l~k  221 (816)
T KOG3792|consen  189 RLAQLHYCKWCKISAAGPQTYREHLRGQKHLKK  221 (816)
T ss_pred             HHHHhhhhHHHHHhccccHHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999997

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=95.68  E-value=0.0079  Score=58.33  Aligned_cols=34  Identities=26%  Similarity=0.482  Sum_probs=31.1

Q ss_pred             cCceeccccccccCCHHHHHHhhcchHHHHHHHH
Q 009730          245 LKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLR  278 (527)
Q Consensus       245 ~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLka  278 (527)
                      ...+||.||+-.+.--.+|-.|++||+|+++|.-
T Consensus        73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgm  106 (193)
T KOG4727|consen   73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGM  106 (193)
T ss_pred             cCceeeeecceeehhhHHHHHHhccHHHHHHHhh
Confidence            3589999999999999999999999999999864

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=95.06  E-value=0.012  Score=54.40  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=34.5

Q ss_pred             cCceeccccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 009730          245 LKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEE  281 (527)
Q Consensus       245 ~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~  281 (527)
                      ...+||-.|-..|.+..+|..|+.+|.|+++|+.|++
T Consensus        55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            3679999999999999999999999999999999884

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=94.64  E-value=0.025  Score=60.23  Aligned_cols=34  Identities=26%  Similarity=0.557  Sum_probs=31.9

Q ss_pred             ceecccccccccCHHHHHHhhchhHHHHHHHhcc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFE  442 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~  442 (527)
                      ++.|++||.++-|...+..|++.+||..++.++.
T Consensus        68 ~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~  101 (390)
T KOG2785|consen   68 VVYCEACNKSFASPKAHENHLKSKKHVENLSNHQ  101 (390)
T ss_pred             ceehHHhhccccChhhHHHHHHHhhcchhhhhhh
Confidence            4899999999999999999999999999998864

>PLN02748 tRNA dimethylallyltransferase

Probab=94.54  E-value=0.023  Score=61.87  Aligned_cols=36  Identities=17%  Similarity=0.452  Sum_probs=32.2

Q ss_pred             Cceecccccc-cccCHHHHHHhhchhHHHHHHHhccC
Q 009730          408 IPLICSLCNV-KCDTKEVFGRHLSGKKHIAKLKRFEG  443 (527)
Q Consensus       408 ~~l~CEICNV-~CnS~~v~~~Hl~GKKH~~kLKk~~g  443 (527)
                      ..|.||+|+. +++++...+.|++|++|.+++++..-
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k  453 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ  453 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence            5588999987 89999999999999999999987753

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=94.03  E-value=0.03  Score=55.33  Aligned_cols=36  Identities=28%  Similarity=0.403  Sum_probs=32.1

Q ss_pred             ccCceecccccccccCHHHHHHhhchhHHHHHHHhc
Q 009730          406 VVIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       406 ~~~~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      ..++|.|.+|+-.-|++..|..|..||||..||-+.
T Consensus        50 h~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarr   85 (222)
T KOG0227|consen   50 HLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARR   85 (222)
T ss_pred             cCcceeehhhhhhhcchhhhhhhhccchhhHHHHHH
Confidence            346699999999999999999999999999998554

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.96  E-value=0.042  Score=34.47  Aligned_cols=21  Identities=19%  Similarity=0.605  Sum_probs=17.6

Q ss_pred             eecccccccccCHHHHHHhhc
Q 009730          410 LICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      |.|++|+..|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            689999999999999999985

...

>PF14968 CCDC84: Coiled coil protein 84

Probab=93.93  E-value=0.052  Score=57.12  Aligned_cols=31  Identities=26%  Similarity=0.517  Sum_probs=26.7

Q ss_pred             eccccccccCCHHHHHHhhcchHHHHHHHHHHHH
Q 009730          249 WCELCRVDCTSLQILEQHRNGKRHRKNLLRIEEL  282 (527)
Q Consensus       249 ~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~~  282 (527)
                      ||+||++.+..   -..|.-+++|+++|..+...
T Consensus         1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~r   31 (336)
T PF14968_consen    1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSR   31 (336)
T ss_pred             CcchhhCcccc---cCCCccCHHHHHHHHHHHHH
Confidence            79999998876   67899999999999987653

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=93.89  E-value=0.055  Score=50.07  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=34.5

Q ss_pred             cCceecccccccccCHHHHHHhhchhHHHHHHHhccC
Q 009730          407 VIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEG  443 (527)
Q Consensus       407 ~~~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~g  443 (527)
                      ...|+|-.|...|-++.+|..|+.+|.|.++||++.+
T Consensus        55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            3559999999999999999999999999999999986

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.57  E-value=0.11  Score=52.55  Aligned_cols=36  Identities=25%  Similarity=0.540  Sum_probs=32.1

Q ss_pred             ccCceecccccccccCHHHHHHhhchhHHHHHHHhcc
Q 009730          406 VVIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFE  442 (527)
Q Consensus       406 ~~~~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~  442 (527)
                      ..+.+.|-|||+... +.....|.+||||..++.++.
T Consensus        32 ~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   32 ESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             CCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence            346689999999998 999999999999999888776

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=93.46  E-value=0.085  Score=56.21  Aligned_cols=14  Identities=14%  Similarity=0.216  Sum_probs=9.7

Q ss_pred             CCCCCCCCCCCCCC
Q 009730          153 GAGHKNFGPRHSNP  166 (527)
Q Consensus       153 gggrg~~g~~~~~~  166 (527)
                      ||+||+.|.+|+.+
T Consensus       356 gg~Rgg~Gg~~gGr  369 (465)
T KOG3973|consen  356 GGSRGGSGGNWGGR  369 (465)
T ss_pred             cCCCCCCCCCCCCC
Confidence            67788877766633

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.26  E-value=0.06  Score=34.55  Aligned_cols=22  Identities=23%  Similarity=0.584  Sum_probs=20.2

Q ss_pred             eecccccccccCHHHHHHhhch
Q 009730          410 LICSLCNVKCDTKEVFGRHLSG  431 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~G  431 (527)
                      |.|++|+..|.+...|..|+.-
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6899999999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=93.10  E-value=0.057  Score=42.70  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=26.7

Q ss_pred             cCceeccccccccCCHHHHHHhhcchHHHHHHHH
Q 009730          245 LKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLR  278 (527)
Q Consensus       245 ~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLka  278 (527)
                      ++..|||.|.+.|.   .|+.|+.+++|.+-++.
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~~   33 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRRFAEN   33 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHHHHcC
Confidence            46789999999997   78899999999997543

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.06  E-value=0.06  Score=58.84  Aligned_cols=34  Identities=24%  Similarity=0.505  Sum_probs=32.4

Q ss_pred             eecccccccccCHHHHHHhhchhHHHHHHHhccC
Q 009730          410 LICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEG  443 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~g  443 (527)
                      ++|-+||++|-|+.+|.-|.+.|||..||.++..
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrq  326 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQ  326 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988864

>PLN02748 tRNA dimethylallyltransferase

Probab=93.01  E-value=0.083  Score=57.63  Aligned_cols=37  Identities=30%  Similarity=0.513  Sum_probs=32.8

Q ss_pred             Cceecccccc-ccCCHHHHHHhhcchHHHHHHHHHHHH
Q 009730          246 KSAWCELCRV-DCTSLQILEQHRNGKRHRKNLLRIEEL  282 (527)
Q Consensus       246 k~~~CeVCqV-~cnSe~vy~sHl~GKKHkKnLkaL~~~  282 (527)
                      +...|++|+. .+.++..-+.|++|++|+++++++...
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~  454 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK  454 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence            5566999998 799999999999999999999987643

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=92.92  E-value=0.057  Score=51.92  Aligned_cols=33  Identities=27%  Similarity=0.624  Sum_probs=29.3

Q ss_pred             ceeccccccccC--CHHHHHHhhcchHHHHHHHHH
Q 009730          247 SAWCELCRVDCT--SLQILEQHRNGKRHRKNLLRI  279 (527)
Q Consensus       247 ~~~CeVCqV~cn--Se~vy~sHl~GKKHkKnLkaL  279 (527)
                      ..||+.|+...+  |.+|=+.|+.|+||+++++.-
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~Y   37 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDY   37 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHH
Confidence            478999998776  899999999999999998754

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.65  E-value=0.082  Score=41.73  Aligned_cols=30  Identities=40%  Similarity=0.653  Sum_probs=26.2

Q ss_pred             cCceeccccccccCCHHHHHHhhcchHHHHHHH
Q 009730          245 LKSAWCELCRVDCTSLQILEQHRNGKRHRKNLL  277 (527)
Q Consensus       245 ~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLk  277 (527)
                      .+..|||.|.+.|.   .|+.|+.+.+|++-+.
T Consensus         3 ~k~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA~   32 (49)
T PF07535_consen    3 KKPGYCENCRVKYD---DLEEHIQSEKHRKFAE   32 (49)
T ss_pred             CCCccCccccchhh---hHHHHhCCHHHHHHHc
Confidence            46789999999997   5899999999999753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=92.45  E-value=0.1  Score=34.73  Aligned_cols=22  Identities=18%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.+...|..|+.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCCccCCccCChhHHHHHhH
Confidence            4899999999999999999984

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=92.19  E-value=0.14  Score=61.59  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=33.6

Q ss_pred             CCcCceeccccccccCCHHHHHHhhcchHHHHHHHHHH
Q 009730          243 QPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIE  280 (527)
Q Consensus       243 kp~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~  280 (527)
                      -+.+..-|.+|.+.++....|..|+..-+|+.+|+..+
T Consensus       514 ~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~  551 (1406)
T KOG1146|consen  514 CPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAE  551 (1406)
T ss_pred             CCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHH
Confidence            46678889999999999999999999999999976544

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=92.17  E-value=0.092  Score=51.72  Aligned_cols=44  Identities=27%  Similarity=0.416  Sum_probs=35.9

Q ss_pred             cCceecccccccccCHHHHHHhhchhHHHHHHHhccCCccccCC
Q 009730          407 VIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAMYGP  450 (527)
Q Consensus       407 ~~~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~g~~~~~G~  450 (527)
                      ...|.|.+|+-.-.++..|..|+.||||..++-+.+..+...|.
T Consensus        51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~eksslgr   94 (222)
T COG5246          51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEEKSSLGR   94 (222)
T ss_pred             CCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHHHhhcccc
Confidence            35599999999999999999999999999998766554444444

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=92.05  E-value=0.071  Score=42.19  Aligned_cols=30  Identities=30%  Similarity=0.403  Sum_probs=25.0

Q ss_pred             ceecccccccccCHHHHHHhhchhHHHHHHHhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      +-+||+|.+.|.   .|+.|+.++||..=.+..
T Consensus         5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~~~   34 (49)
T smart00586        5 PGYCENCREKYD---DLETHLLSEKHRRFAENN   34 (49)
T ss_pred             CcccccHhHHHh---hHHHHhccHHHHHHHcCc
Confidence            378999999986   799999999998765443

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=91.45  E-value=0.36  Score=56.81  Aligned_cols=6  Identities=33%  Similarity=0.335  Sum_probs=3.1

Q ss_pred             hcCCCC
Q 009730          102 SAYYPA  107 (527)
Q Consensus       102 ~~~~~~  107 (527)
                      |+|||-
T Consensus      1168 maryDn 1173 (1282)
T KOG0921|consen 1168 MARYDN 1173 (1282)
T ss_pred             cccccC
Confidence            455554

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.37  E-value=0.12  Score=40.90  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=25.1

Q ss_pred             ceecccccccccCHHHHHHhhchhHHHHHHHhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      +-+||+|.+.|.   .|+.|+.+++|..=.+..
T Consensus         5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA~~~   34 (49)
T PF07535_consen    5 PGYCENCRVKYD---DLEEHIQSEKHRKFAEND   34 (49)
T ss_pred             CccCccccchhh---hHHHHhCCHHHHHHHcCc
Confidence            368999999997   599999999998766443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=90.51  E-value=0.078  Score=59.06  Aligned_cols=11  Identities=36%  Similarity=1.108  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCC
Q 009730          133 TPGGQFPNKGG  143 (527)
Q Consensus       133 ~~~g~~~~~gg  143 (527)
                      +|.|.....||
T Consensus       517 ~p~~k~ss~~~  527 (556)
T PF05918_consen  517 PPSGKYSSNGG  527 (556)
T ss_dssp             -----------
T ss_pred             CCCCCCcCCCC
Confidence            44444443333

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=89.99  E-value=0.61  Score=48.26  Aligned_cols=17  Identities=29%  Similarity=0.350  Sum_probs=11.1

Q ss_pred             HhhchhHHHHHHHhccC
Q 009730          427 RHLSGKKHIAKLKRFEG  443 (527)
Q Consensus       427 ~Hl~GKKH~~kLKk~~g  443 (527)
                      +|..|+.-+.+.|+...
T Consensus       190 s~rsGRdL~nmAkkRtN  206 (317)
T KOG1596|consen  190 SHRSGRDLINMAKKRTN  206 (317)
T ss_pred             cccchHHHHHHhhccCC
Confidence            67777776666666543

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=89.44  E-value=0.26  Score=45.11  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=33.1

Q ss_pred             CceecccccccccCHHHHHHhhchhHHHHHHHhccC
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEG  443 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~g  443 (527)
                      +.++|--|...|.++.+|..|+.|+-|..++|++.+
T Consensus        54 GqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe   89 (126)
T COG5112          54 GQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE   89 (126)
T ss_pred             ceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence            348888899999999999999999999999999976

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=89.34  E-value=0.2  Score=53.62  Aligned_cols=39  Identities=26%  Similarity=0.444  Sum_probs=34.4

Q ss_pred             CCcCceeccccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 009730          243 QPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEE  281 (527)
Q Consensus       243 kp~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~  281 (527)
                      ......+|++|+..|.++..++.|+..|||..++.++..
T Consensus        64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            344578999999999999999999999999999888663

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=89.15  E-value=0.19  Score=40.93  Aligned_cols=31  Identities=23%  Similarity=0.537  Sum_probs=26.1

Q ss_pred             ceecccccccccCHHHHHHhhchhHHHHHHH
Q 009730          409 PLICSLCNVKCDTKEVFGRHLSGKKHIAKLK  439 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLK  439 (527)
                      .+.|.+|++.|.+...|..|+..+.|.....
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            4999999999999999999999999987643

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=89.13  E-value=0.21  Score=53.40  Aligned_cols=33  Identities=27%  Similarity=0.504  Sum_probs=29.2

Q ss_pred             ceecccccccccCHHHHHHhhchhHHHHHHHhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      .++|+.|...|....||+.|+.||.|-+..++.
T Consensus       238 ~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~  270 (470)
T COG5188         238 KVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGK  270 (470)
T ss_pred             ceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhh
Confidence            389999999999999999999999998766543

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=88.93  E-value=0.37  Score=51.55  Aligned_cols=13  Identities=23%  Similarity=0.475  Sum_probs=6.5

Q ss_pred             CCCCCccCCCCCC
Q 009730          146 QGGRPFQGAGHKN  158 (527)
Q Consensus       146 ~gg~~~rgggrg~  158 (527)
                      |+|++-+||||++
T Consensus       429 rdggg~~gggr~g  441 (465)
T KOG3973|consen  429 RDGGGRDGGGRDG  441 (465)
T ss_pred             CCCCCCCCCCCCC
Confidence            3444445555555

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=88.92  E-value=0.3  Score=48.52  Aligned_cols=39  Identities=28%  Similarity=0.363  Sum_probs=34.1

Q ss_pred             CcCceeccccccccCCHHHHHHhhcchHHHHHHHHHHHH
Q 009730          244 PLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEEL  282 (527)
Q Consensus       244 p~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~~  282 (527)
                      -....-|.+|.-.-+++..|..|+.||||+-||.+....
T Consensus        50 h~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~   88 (222)
T KOG0227|consen   50 HLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAK   88 (222)
T ss_pred             cCcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHH
Confidence            445778999999999999999999999999999876554

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=88.67  E-value=0.36  Score=44.23  Aligned_cols=38  Identities=24%  Similarity=0.453  Sum_probs=34.9

Q ss_pred             CcCceeccccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 009730          244 PLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEE  281 (527)
Q Consensus       244 p~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~  281 (527)
                      -...+||--|...|-++.+|..|+.||-|+++++.|.+
T Consensus        52 GlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe   89 (126)
T COG5112          52 GLGQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE   89 (126)
T ss_pred             CCceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence            34679999999999999999999999999999998875

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=88.37  E-value=0.26  Score=51.66  Aligned_cols=38  Identities=21%  Similarity=0.506  Sum_probs=31.9

Q ss_pred             CCCcCceeccccccccC-CHHHHHHhhcchHHHHHHHHH
Q 009730          242 QQPLKSAWCELCRVDCT-SLQILEQHRNGKRHRKNLLRI  279 (527)
Q Consensus       242 ~kp~k~~~CeVCqV~cn-Se~vy~sHl~GKKHkKnLkaL  279 (527)
                      |+.....||++|++.+. ++..-..|-.|+||+-+|++.
T Consensus         5 WkS~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr   43 (336)
T KOG0150|consen    5 WKSQPKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKR   43 (336)
T ss_pred             hhhccchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence            44556789999999876 788888999999999998753

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=88.14  E-value=0.3  Score=47.12  Aligned_cols=30  Identities=30%  Similarity=0.618  Sum_probs=26.1

Q ss_pred             eeccccc--ccccCHHHHHHhhchhHHHHHHH
Q 009730          410 LICSLCN--VKCDTKEVFGRHLSGKKHIAKLK  439 (527)
Q Consensus       410 l~CEICN--V~CnS~~v~~~Hl~GKKH~~kLK  439 (527)
                      |.|+-|+  ..=.|-.|=..|++|+||+.++|
T Consensus         4 YyCDYCdt~LthDslsvRK~H~~GrkH~~nvk   35 (165)
T KOG3454|consen    4 YYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVK   35 (165)
T ss_pred             chhhhhhhhhhcccHHHHHhhhhhHHHHHHHH
Confidence            8999998  44568889999999999999884

>smart00355 ZnF_C2H2 zinc finger

Probab=87.87  E-value=0.32  Score=30.41  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             eecccccccccCHHHHHHhhc
Q 009730          410 LICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      |.|.+|+..|.+...|..|+.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            579999999999999999986

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=87.71  E-value=0.83  Score=54.01  Aligned_cols=13  Identities=54%  Similarity=1.012  Sum_probs=5.5

Q ss_pred             CcCCCCcCCCCCC
Q 009730          174 HGRGRGRGRGGSR  186 (527)
Q Consensus       174 rgrgrg~g~g~~~  186 (527)
                      ||+|||.|+||+.
T Consensus      1258 rgggrgagggGgf 1270 (1282)
T KOG0921|consen 1258 RGGGRGAGGGGGF 1270 (1282)
T ss_pred             CCCCCCCCCCCCC
Confidence            4444444444333

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.46  E-value=0.75  Score=46.90  Aligned_cols=39  Identities=21%  Similarity=0.417  Sum_probs=35.9

Q ss_pred             CCCcCceeccccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 009730          242 QQPLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEE  281 (527)
Q Consensus       242 ~kp~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~  281 (527)
                      ..+...+.|-||++-.. +.+...|.+||||.-++..|..
T Consensus        30 yn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs   68 (264)
T KOG3032|consen   30 YNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS   68 (264)
T ss_pred             cCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence            36778899999999999 9999999999999999999995

>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]

Probab=87.05  E-value=0.89  Score=45.11  Aligned_cols=14  Identities=14%  Similarity=0.297  Sum_probs=9.4

Q ss_pred             ccccccccCCcccc
Q 009730           53 SYYSTAYQSLPHQQ   66 (527)
Q Consensus        53 ~~y~~~~~~~~~q~   66 (527)
                      .+|..++--||..-
T Consensus       124 k~fi~p~KllPl~R  137 (215)
T KOG3262|consen  124 KLFIDPDKLLPLDR  137 (215)
T ss_pred             eEEecccccCcHhh
Confidence            55777777777654

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=84.69  E-value=1.9  Score=44.84  Aligned_cols=16  Identities=38%  Similarity=0.540  Sum_probs=6.7

Q ss_pred             CCCCCccCCCCCCCCC
Q 009730          146 QGGRPFQGAGHKNFGP  161 (527)
Q Consensus       146 ~gg~~~rgggrg~~g~  161 (527)
                      +||+...||+||.||+
T Consensus        16 ~gg~gg~gg~rg~~gg   31 (317)
T KOG1596|consen   16 RGGRGGFGGGRGTSGG   31 (317)
T ss_pred             ccCcCCCCCCccccCC
Confidence            3334444444444443

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=84.18  E-value=0.77  Score=29.96  Aligned_cols=20  Identities=30%  Similarity=0.604  Sum_probs=16.3

Q ss_pred             eecccccccccCHHHHHHhhc
Q 009730          410 LICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      |.|..|+..++ +..|..|+.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~   20 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLK   20 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHH
Confidence            68999999998 999999975

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=83.65  E-value=0.82  Score=28.47  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=17.1

Q ss_pred             eeccccccccCCHHHHHHhhc
Q 009730          248 AWCELCRVDCTSLQILEQHRN  268 (527)
Q Consensus       248 ~~CeVCqV~cnSe~vy~sHl~  268 (527)
                      +-|++|...|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            469999999999999999974

...

>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]

Probab=82.90  E-value=1.8  Score=43.11  Aligned_cols=19  Identities=37%  Similarity=0.686  Sum_probs=12.5

Q ss_pred             CCCCCCCCCCCccCCCCCC
Q 009730          140 NKGGCRQGGRPFQGAGHKN  158 (527)
Q Consensus       140 ~~gg~~~gg~~~rgggrg~  158 (527)
                      ..||+.+|++.||||+++.
T Consensus         5 rgggg~~g~~gfRgg~ggg   23 (215)
T KOG3262|consen    5 RGGGGGGGGGGFRGGGGGG   23 (215)
T ss_pred             cCCCCCCCCCCcccCCCCC
Confidence            5566666677778776654

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=82.32  E-value=1.1  Score=44.32  Aligned_cols=39  Identities=28%  Similarity=0.420  Sum_probs=34.2

Q ss_pred             CcCceeccccccccCCHHHHHHhhcchHHHHHHHHHHHH
Q 009730          244 PLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEEL  282 (527)
Q Consensus       244 p~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~~  282 (527)
                      -...+-|.+|+-.-.++..|..|+.||||+-|+.+-++.
T Consensus        50 h~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~e   88 (222)
T COG5246          50 HTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEE   88 (222)
T ss_pred             CCCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHHH
Confidence            445778999999999999999999999999999887543

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional

Probab=81.66  E-value=3.1  Score=44.34  Aligned_cols=6  Identities=33%  Similarity=0.772  Sum_probs=2.6

Q ss_pred             CCCCCC
Q 009730          153 GAGHKN  158 (527)
Q Consensus       153 gggrg~  158 (527)
                      |||||.
T Consensus       402 ~~~~~~  407 (456)
T PRK10590        402 GGGRGQ  407 (456)
T ss_pred             CCCCCC
Confidence            444443

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.54  E-value=1.2  Score=28.45  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=19.0

Q ss_pred             eeccccccccCCHHHHHHhhc
Q 009730          248 AWCELCRVDCTSLQILEQHRN  268 (527)
Q Consensus       248 ~~CeVCqV~cnSe~vy~sHl~  268 (527)
                      +-|+.|...|+++..|..|..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            469999999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=80.49  E-value=1.3  Score=29.31  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=19.4

Q ss_pred             eeccccccccCCHHHHHHhhc
Q 009730          248 AWCELCRVDCTSLQILEQHRN  268 (527)
Q Consensus       248 ~~CeVCqV~cnSe~vy~sHl~  268 (527)
                      +.|++|++.|.+...|..|..
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            579999999999999999984

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=80.09  E-value=1  Score=47.52  Aligned_cols=33  Identities=21%  Similarity=0.428  Sum_probs=27.6

Q ss_pred             Cceecccccccc-cCHHHHHHhhchhHHHHHHHh
Q 009730          408 IPLICSLCNVKC-DTKEVFGRHLSGKKHIAKLKR  440 (527)
Q Consensus       408 ~~l~CEICNV~C-nS~~v~~~Hl~GKKH~~kLKk  440 (527)
                      ...||++|+|.+ +.+..-+.|-.|++|..+|.+
T Consensus         9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~K   42 (336)
T KOG0150|consen    9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAK   42 (336)
T ss_pred             cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHH
Confidence            448999998654 789999999999999888743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	527
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	99.4
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	98.53
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.05
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.47
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.93
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	96.64
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	96.5
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	96.39
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	94.85
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.79
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.18
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	91.83
1ard_A	29	Yeast transcription factor ADR1; transcription reg	90.88
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	90.83
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	90.71
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.56
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	90.43
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	90.35
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	90.31
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.97
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	89.95
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.84
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.81
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.53
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	89.36
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	89.25
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.83
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.51
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	88.11
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	88.3
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	88.22
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	88.17
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	87.85
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.56
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	87.46
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	87.43
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	87.27
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	87.1
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	87.02
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	86.96
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.95
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	86.94
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.91
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.88
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	86.87
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	86.86
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	86.86
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.86
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	86.84
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.82
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	86.79
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.55
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	86.55
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.46
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.41
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.35
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.32
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.27
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	86.26
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.2
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.1
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.09
1paa_A	30	Yeast transcription factor ADR1; transcription reg	86.06
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	86.01
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.88
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	85.85
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.81
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.8
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.78
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.78
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.77
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.71
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.7
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	85.7
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.7
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	85.67
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.53
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.49
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.48
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.47
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.43
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.42
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.34
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.34
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.33
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.26
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	85.2
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.11
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	85.05
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	84.99
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.98
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.97
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	84.97
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.95
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	84.92
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.92
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	84.91
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	84.82
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.67
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.62
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.62
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	84.58
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.55
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.5
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	84.39
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	84.36
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	84.33
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.31
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	84.27
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.26
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.21
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	84.2
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.18
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.15
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	84.1
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.1
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	84.04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	83.98
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.93
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.92
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	83.91
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.88
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.82
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.67
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.67
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.65
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	83.64
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.6
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	83.57
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.3
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	83.27
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.23
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	83.11
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	83.04
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.02
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	83.0
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.99
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	82.82
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	82.59
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.56
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	82.24
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	82.09
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	82.03
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.93
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	81.82
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	81.68
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	81.51
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	81.47
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.36
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	81.11
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	80.91
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	80.9
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	80.88
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	80.74
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	80.69
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	80.48
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	80.47
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	80.39
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	80.22
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	80.18
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	80.18

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=99.40  E-value=6.2e-13  Score=117.17  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=32.8

Q ss_pred             CceeccccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 009730          246 KSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEE  281 (527)
Q Consensus       246 k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~  281 (527)
                      ..++|.+|++.|+|+.++..|+.|++|+++|+.+..
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            358999999999999999999999999999987654

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=98.53  E-value=4.4e-09  Score=109.26  Aligned_cols=83  Identities=20%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             CcCceeccccccccCCHHHHHHhhcchHHHHHHHHHHHHhhhcCCccccccccchhhhchhhhh-cCCcccccccccccc
Q 009730          244 PLKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPMAEIQTEQKPIAECQTEAS-ERPELAQDGEEKEAA  322 (527)
Q Consensus       244 p~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~~~K~~~~~e~~ste~~~IAe~p~E~~-~~P~l~~d~E~~~tk  322 (527)
                      ....+||..|++.|++++||..|+.||||+|++++..                 .||.  .|+. ......+++++.+|+
T Consensus       289 ~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k-----------------~iA~--~E~~I~~l~~~L~~~~~~Tk  349 (402)
T 4dgw_A          289 EAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRR-----------------NFVY--SEYKLHRYLKYLNDEFSRTR  349 (402)
T ss_dssp             TTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSH-----------------HHHH--HHHHHHHHHHHTHHHHHHHH
T ss_pred             CCcCeeehhhhhhhccccccHHHhcccccchhHHHHH-----------------HHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999876531                 2444  5666 666678999999999


Q ss_pred             cccCCccccchhhhhhcCCCCCC
Q 009730          323 VDVPSETVNDDKEIEAEHPGNAD  345 (527)
Q Consensus       323 vNveska~ltsher~~Elq~n~~  345 (527)
                      .||+|+.++|.+||++|++....
T Consensus       350 ~nVERKqa~T~~Ere~E~e~l~~  372 (402)
T 4dgw_A          350 SFVERKLAFTANERMAEMDILTQ  372 (402)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH
Confidence            99999999999999988655433

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.05  E-value=2.3e-06  Score=75.36  Aligned_cols=36  Identities=36%  Similarity=0.491  Sum_probs=33.3

Q ss_pred             cCceeccccccccCCHHHHHHhhcchHHHHHHHHHH
Q 009730          245 LKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIE  280 (527)
Q Consensus       245 ~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~  280 (527)
                      ...+||++|++.|+|+.+|.+|+.||+|+++|++++
T Consensus        91 ~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           91 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            457899999999999999999999999999999864

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.47  E-value=0.00011  Score=65.90  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=41.5

Q ss_pred             cCceecccccccccCHHHHHHhhchhHHHHHHHhccCC----ccccCCCcccccCCCCCcccc
Q 009730          407 VIPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGH----QAMYGPEGVQALYPPNPVVHT  465 (527)
Q Consensus       407 ~~~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~g~----~~~~G~~gl~a~~p~n~~~~~  465 (527)
                      ..+|+|.+|++.|.++..|..|+.+|+|.++++++...    ..+-...|+....+|..+...
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~~p~Tq~eAe~aag~g~~~~~~~~~~~  110 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVPPRRLAVP  110 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSCSSCTTTSSCSCCCCCCC--------
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhccCCCcHHHHHHhccCCCCCCCcccccc
Confidence            34699999999999999999999999999999998752    333334666666665544433

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.93  E-value=0.00047  Score=61.75  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=33.6

Q ss_pred             cCceeccccccccCCHHHHHHhhcchHHHHHHHHHH
Q 009730          245 LKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIE  280 (527)
Q Consensus       245 ~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~  280 (527)
                      ...++|.+|.+.|.+...|..|+.+|+|++++++|.
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~   83 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS   83 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhc
Confidence            357999999999999999999999999999999876

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=96.64  E-value=0.00099  Score=55.54  Aligned_cols=33  Identities=30%  Similarity=0.618  Sum_probs=29.3

Q ss_pred             ceecccccccc--cCHHHHHHhhchhHHHHHHHhc
Q 009730          409 PLICSLCNVKC--DTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       409 ~l~CEICNV~C--nS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      .|+|+-|++.+  +|..+...|++|+||+.++++.
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            49999999888  7788899999999999988765

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=96.50  E-value=0.0014  Score=51.71  Aligned_cols=36  Identities=33%  Similarity=0.602  Sum_probs=33.1

Q ss_pred             eecccccccccCHHHHHHhhchhHHHHHHHhccCCc
Q 009730          410 LICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQ  445 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~g~~  445 (527)
                      ..|++|+|.|+.+..+..|+..+.|+.+||+.-+.+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~~q   49 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQ   49 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCSS
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHHHHHhh
Confidence            579999999999999999999999999999876654

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=96.39  E-value=0.0018  Score=54.03  Aligned_cols=35  Identities=20%  Similarity=0.464  Sum_probs=30.8

Q ss_pred             ceecccccccc--CCHHHHHHhhcchHHHHHHHHHHH
Q 009730          247 SAWCELCRVDC--TSLQILEQHRNGKRHRKNLLRIEE  281 (527)
Q Consensus       247 ~~~CeVCqV~c--nSe~vy~sHl~GKKHkKnLkaL~~  281 (527)
                      .+||+.|++.+  .|..+.+.|+.|+||+.++++.-.
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~   39 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYC   39 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHH
Confidence            58999999999  478999999999999999886543

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=94.85  E-value=0.013  Score=61.23  Aligned_cols=34  Identities=29%  Similarity=0.480  Sum_probs=31.0

Q ss_pred             CceecccccccccCHHHHHHhhchhHHHHHHHhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      ..+||+.|+..|.++.+|..||+||||.+++.+.
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            4599999999999999999999999999987654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.79  E-value=0.011  Score=61.67  Aligned_cols=35  Identities=23%  Similarity=0.453  Sum_probs=31.3

Q ss_pred             Cceecccccc------cccCHHHHHHhhchhHHHHHHHhcc
Q 009730          408 IPLICSLCNV------KCDTKEVFGRHLSGKKHIAKLKRFE  442 (527)
Q Consensus       408 ~~l~CEICNV------~CnS~~v~~~Hl~GKKH~~kLKk~~  442 (527)
                      ..|.|+||+.      ++.++...+.|++|++|.++|++..
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~  399 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNT  399 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHH
Confidence            3489999987      8999999999999999999997653

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.18  E-value=0.053  Score=56.68  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=33.4

Q ss_pred             cCceecccccc------ccCCHHHHHHhhcchHHHHHHHHHHHH
Q 009730          245 LKSAWCELCRV------DCTSLQILEQHRNGKRHRKNLLRIEEL  282 (527)
Q Consensus       245 ~k~~~CeVCqV------~cnSe~vy~sHl~GKKHkKnLkaL~~~  282 (527)
                      -+...|++|+.      .+.++...+.|++|++|+++|++....
T Consensus       358 ~~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~  401 (409)
T 3eph_A          358 WTHYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ  401 (409)
T ss_dssp             CCEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             ccceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34568999998      799999999999999999999987654

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=91.83  E-value=0.089  Score=31.47  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             eecccccccccCHHHHHHhhc
Q 009730          410 LICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      |.|++|+..|.....|..|+.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            889999999999999999973

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=90.88  E-value=0.12  Score=31.13  Aligned_cols=22  Identities=23%  Similarity=0.634  Sum_probs=20.0

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4899999999999999999964

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=90.83  E-value=0.14  Score=30.84  Aligned_cols=21  Identities=33%  Similarity=0.751  Sum_probs=19.7

Q ss_pred             ceecccccccccCHHHHHHhh
Q 009730          409 PLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      +|.|++|+..|.....|..|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~   23 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHL   23 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHH
Confidence            499999999999999999996

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=90.71  E-value=0.16  Score=30.73  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4999999999999999999974

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=90.56  E-value=0.15  Score=32.30  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCcchhCCHHHHHHHHH
Confidence            4999999999999999999963

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=90.43  E-value=0.15  Score=31.05  Aligned_cols=22  Identities=27%  Similarity=0.753  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            4999999999999999999974

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.35  E-value=0.16  Score=30.48  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=20.0

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4899999999999999999973

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=90.31  E-value=0.17  Score=32.33  Aligned_cols=23  Identities=35%  Similarity=0.706  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999974

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.97  E-value=0.18  Score=32.25  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|.+|+..|.....|..|+.
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            9 PYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            5999999999999999999973

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=89.95  E-value=0.13  Score=31.18  Aligned_cols=22  Identities=14%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4899999999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.84  E-value=0.18  Score=32.43  Aligned_cols=23  Identities=30%  Similarity=0.665  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            35999999999999999999963

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.81  E-value=0.19  Score=32.31  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.3

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            9 LYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            5999999999999999999974

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.53  E-value=0.2  Score=32.08  Aligned_cols=22  Identities=23%  Similarity=0.535  Sum_probs=20.2

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|...|.....|..|+
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~   29 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHK   29 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHH
Confidence            3599999999999999999996

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=89.36  E-value=0.2  Score=32.30  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            35999999999999999999964

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=89.25  E-value=0.23  Score=29.90  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|...|.....|..|+.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4999999999999999999963

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.83  E-value=0.25  Score=31.77  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            35999999999999999999973

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.51  E-value=0.23  Score=32.05  Aligned_cols=22  Identities=14%  Similarity=0.516  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHH
Confidence            4999999999999999999974

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=88.11  E-value=0.089  Score=31.54  Aligned_cols=22  Identities=18%  Similarity=0.600  Sum_probs=19.9

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            4899999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=88.30  E-value=0.27  Score=32.40  Aligned_cols=22  Identities=23%  Similarity=0.699  Sum_probs=20.1

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.+...|..|+.
T Consensus         6 ~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            6 SYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             ceECCCCCcccCCHHHHHHHHH
Confidence            5999999999999999999963

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=88.22  E-value=0.14  Score=40.35  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             eeccccccccCCHHHHHHhhcchHHHHHHHH
Q 009730          248 AWCELCRVDCTSLQILEQHRNGKRHRKNLLR  278 (527)
Q Consensus       248 ~~CeVCqV~cnSe~vy~sHl~GKKHkKnLka  278 (527)
                      .-|++|.|+|+....+..|+--+.|..+|+.
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~   44 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRE   44 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHH
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHH
Confidence            4799999999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=88.17  E-value=0.23  Score=31.98  Aligned_cols=22  Identities=14%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            4899999999999999999973

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.85  E-value=0.3  Score=33.15  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            35999999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.56  E-value=0.31  Score=33.35  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHH
Confidence            35999999999999999999974

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=87.46  E-value=0.31  Score=34.32  Aligned_cols=22  Identities=18%  Similarity=0.631  Sum_probs=20.1

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         7 p~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            7 PYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEECCCcCcccCCHHHHHHHhh
Confidence            4999999999999999999874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.43  E-value=0.33  Score=32.41  Aligned_cols=23  Identities=22%  Similarity=0.590  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            35999999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=87.27  E-value=0.34  Score=32.18  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            34999999999999999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.10  E-value=0.33  Score=32.12  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=20.1

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            4999999999999999999963

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=87.02  E-value=0.36  Score=31.98  Aligned_cols=22  Identities=18%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|+..|.....|..|+
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~   31 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQ   31 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHh
Confidence            3599999999999999999996

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.96  E-value=0.38  Score=31.88  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            35999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.95  E-value=0.35  Score=32.87  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CEECCccCcccCCHHHHHHHHH
Confidence            4999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.94  E-value=0.34  Score=32.89  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHT
T ss_pred             cCccCCCCCCccCChHHHHHHHH
Confidence            35999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.91  E-value=0.38  Score=32.59  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            34999999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.88  E-value=0.36  Score=32.31  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQ   32 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHH
Confidence            3499999999999999999997

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=86.87  E-value=0.19  Score=30.02  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.8

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            4889999999999999999973

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=86.86  E-value=0.22  Score=29.91  Aligned_cols=22  Identities=14%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            3889999999999999999963

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.86  E-value=0.38  Score=32.61  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            34999999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.86  E-value=0.38  Score=32.72  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            34999999999999999999974

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=86.84  E-value=0.12  Score=31.35  Aligned_cols=22  Identities=23%  Similarity=0.623  Sum_probs=20.0

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            4899999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.82  E-value=0.36  Score=32.79  Aligned_cols=22  Identities=23%  Similarity=0.535  Sum_probs=20.2

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|+..|.....|..|+
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQ   32 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHH
Confidence            3499999999999999999997

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.79  E-value=0.37  Score=32.01  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           11 PYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             SEECTTTCCEESSHHHHHHHTH
T ss_pred             CEeCCCcChhhCCHHHHHHHHH
Confidence            4999999999999999999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.55  E-value=0.38  Score=32.79  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHH
Confidence            34999999999999999999973

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=86.55  E-value=0.13  Score=31.32  Aligned_cols=22  Identities=18%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            4899999999999999999974

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.46  E-value=0.29  Score=31.63  Aligned_cols=21  Identities=19%  Similarity=0.532  Sum_probs=19.7

Q ss_pred             ceecccccccccCH-HHHHHhh
Q 009730          409 PLICSLCNVKCDTK-EVFGRHL  429 (527)
Q Consensus       409 ~l~CEICNV~CnS~-~v~~~Hl  429 (527)
                      +|.|++|+..|... ..|..|+
T Consensus         9 ~~~C~~C~k~f~~~~~~L~~H~   30 (37)
T 2elp_A            9 AMKCPYCDFYFMKNGSDLQRHI   30 (37)
T ss_dssp             CEECSSSSCEECSSCHHHHHHH
T ss_pred             CeECCCCChhhccCHHHHHHHH
Confidence            59999999999999 9999997

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.41  E-value=0.39  Score=32.61  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            34999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.35  E-value=0.4  Score=32.47  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            34999999999999999999963

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.32  E-value=0.41  Score=32.55  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHh
Confidence            34999999999999999999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.27  E-value=0.37  Score=32.32  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           12 PYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             SCEETTTTEECSSHHHHHHHHT
T ss_pred             CeeCCCCCCccCCHHHHHHHHH
Confidence            4999999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.26  E-value=0.36  Score=31.95  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            34999999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.20  E-value=0.37  Score=32.24  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHhh
Confidence            4999999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.10  E-value=0.41  Score=32.39  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHH
Confidence            34999999999999999999973

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=86.09  E-value=0.42  Score=32.59  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999973

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=86.06  E-value=0.29  Score=29.75  Aligned_cols=21  Identities=29%  Similarity=0.659  Sum_probs=19.2

Q ss_pred             ceecccccccccCHHHHHHhh
Q 009730          409 PLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      +|.|++|+..|.....|..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            489999999999999999994

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.01  E-value=0.45  Score=32.02  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.88  E-value=0.41  Score=32.63  Aligned_cols=23  Identities=13%  Similarity=0.254  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            34999999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.85  E-value=0.39  Score=32.55  Aligned_cols=23  Identities=17%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHT
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            34999999999999999999974

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.81  E-value=0.46  Score=32.39  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCCccCCHHHHHHHHH
Confidence            34999999999999999999974

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.80  E-value=0.46  Score=32.38  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=20.4

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGG
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            4999999999999999999974

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.78  E-value=0.45  Score=32.32  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHH
Confidence            34999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.78  E-value=0.38  Score=32.55  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CcCCCCCCchhCCHHHHHHHHH
Confidence            4999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.77  E-value=0.44  Score=32.46  Aligned_cols=23  Identities=13%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            34999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.71  E-value=0.45  Score=32.22  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQA   33 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHH
Confidence            34999999999999999999973

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.70  E-value=0.4  Score=32.71  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=20.1

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHK   32 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHH
Confidence            3499999999999999999996

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.70  E-value=0.41  Score=32.54  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CCeECCcCChhhCCHHHHHHHHH
Confidence            34999999999999999999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.70  E-value=0.46  Score=32.17  Aligned_cols=23  Identities=22%  Similarity=0.496  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            35999999999999999999973

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.67  E-value=0.44  Score=32.35  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            34999999999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.53  E-value=0.34  Score=32.95  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHL   32 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHH
Confidence            3499999999999999999997

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.49  E-value=0.43  Score=32.53  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHH
Confidence            34999999999999999999963

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.48  E-value=0.49  Score=32.12  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCChHHHHHHHh
Confidence            34999999999999999999974

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.47  E-value=0.49  Score=32.13  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeeCcccCcccCChHHHHHHHH
Confidence            35999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.43  E-value=0.48  Score=32.28  Aligned_cols=23  Identities=17%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHH
Confidence            34999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.42  E-value=0.49  Score=32.24  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCcccCCHHHHHHHHH
Confidence            34999999999999999999975

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.34  E-value=0.48  Score=32.17  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHH
Confidence            34999999999999999999973

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.34  E-value=0.4  Score=31.37  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             CceecccccccccCHHHHHHh
Q 009730          408 IPLICSLCNVKCDTKEVFGRH  428 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~H  428 (527)
                      .+|.|++|+..|.....|..|
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHH
Confidence            359999999999999999999

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.33  E-value=0.46  Score=32.14  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             ceecccccccccCHHHHHHhh
Q 009730          409 PLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      +|.|++|+..|.+...|..|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQ   32 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHH
T ss_pred             CccCCccChhhCCHHHHHHHH
Confidence            499999999999999999997

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.26  E-value=0.49  Score=32.24  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            34999999999999999999963

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.20  E-value=0.5  Score=32.06  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQL   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            34999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.11  E-value=0.44  Score=32.56  Aligned_cols=23  Identities=22%  Similarity=0.128  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHH
Confidence            34999999999999999999963

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.05  E-value=0.44  Score=32.38  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           12 PYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             SSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4999999999999999999973

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=84.99  E-value=0.48  Score=33.69  Aligned_cols=22  Identities=27%  Similarity=0.634  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        24 ~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           24 PATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4999999999999999999963

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.98  E-value=0.38  Score=32.82  Aligned_cols=23  Identities=17%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            35999999999999999999974

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.97  E-value=0.51  Score=32.03  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            34999999999999999999973

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.97  E-value=0.51  Score=31.97  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            35999999999999999999975

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.95  E-value=0.54  Score=31.92  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGG
T ss_pred             cCccCCCccchhCCHHHHHHHHH
Confidence            35999999999999999999974

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.92  E-value=0.51  Score=31.92  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=20.3

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQR   33 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CeeCCCCCchhCCHHHHHHHHH
Confidence            4999999999999999999974

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.92  E-value=0.5  Score=32.07  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            34999999999999999999974

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.91  E-value=0.51  Score=32.02  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHH
Confidence            34999999999999999999974

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=84.82  E-value=0.56  Score=31.73  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGG
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            34999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.67  E-value=0.45  Score=32.33  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCChhHHHHHhH
Confidence            34999999999999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.62  E-value=0.54  Score=32.02  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHH
Confidence            35999999999999999999963

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.62  E-value=0.47  Score=32.13  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCeECCCcChhhCCHHHHHHHHH
Confidence            34999999999999999999973

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=84.58  E-value=0.55  Score=31.97  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999974

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.55  E-value=0.54  Score=31.91  Aligned_cols=23  Identities=22%  Similarity=0.557  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            34999999999999999999973

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.50  E-value=0.56  Score=31.83  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhh
Confidence            34999999999999999999974

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.39  E-value=0.58  Score=31.87  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHH
Confidence            34999999999999999999975

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.36  E-value=0.57  Score=31.49  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4999999999999999999963

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.33  E-value=0.43  Score=32.53  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHER   33 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHH
Confidence            35999999999999999999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.31  E-value=0.5  Score=32.18  Aligned_cols=23  Identities=22%  Similarity=0.509  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            34999999999999999999974

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.27  E-value=0.57  Score=31.91  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCcCCCccChhhCChHHHHHHHH
Confidence            34999999999999999999974

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=84.26  E-value=0.59  Score=31.69  Aligned_cols=23  Identities=13%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             cCcCCCCCcchhCCHHHHHHHHH
Confidence            34999999999999999999974

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.21  E-value=0.55  Score=31.87  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35999999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.20  E-value=0.51  Score=31.85  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=20.4

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999963

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.18  E-value=0.51  Score=32.02  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=20.1

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CcCCCcCCchhCCHHHHHHHHH
Confidence            4999999999999999999963

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.15  E-value=0.58  Score=31.74  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHH
Confidence            34999999999999999999973

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.10  E-value=0.56  Score=31.68  Aligned_cols=22  Identities=18%  Similarity=0.529  Sum_probs=20.1

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|+..|.....|..|+
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~   30 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHT   30 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHH
Confidence            3499999999999999999997

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.10  E-value=0.59  Score=31.83  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHH
Confidence            34999999999999999999973

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=84.04  E-value=0.55  Score=31.85  Aligned_cols=22  Identities=14%  Similarity=0.318  Sum_probs=20.3

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGG
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4999999999999999999974

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.98  E-value=0.54  Score=31.80  Aligned_cols=21  Identities=14%  Similarity=0.257  Sum_probs=19.7

Q ss_pred             ceecccccccccCHHHHHHhh
Q 009730          409 PLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      +|.|++|+..|.....|..|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHE   32 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHH
T ss_pred             CeECCCCCCccCchHHHHHHH
Confidence            499999999999999999996

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.93  E-value=0.6  Score=31.68  Aligned_cols=23  Identities=17%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQV   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHH
Confidence            34999999999999999999973

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.92  E-value=0.61  Score=31.54  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHH
Confidence            34999999999999999999973

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.91  E-value=0.45  Score=32.03  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHER   33 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHH
T ss_pred             CCeECCCCCchhCCHHHHHHHhH
Confidence            35999999999999999999973

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=83.88  E-value=0.65  Score=31.40  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeECCccccccCChHHHHHHHH
Confidence            34999999999999999999974

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.82  E-value=0.61  Score=31.62  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCCeeCChHHHHHHHH
Confidence            4999999999999999999963

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.67  E-value=0.63  Score=31.68  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHH
Confidence            35999999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.67  E-value=0.52  Score=32.09  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           11 KPYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            34999999999999999999974

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.65  E-value=0.66  Score=31.36  Aligned_cols=23  Identities=13%  Similarity=0.163  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCcCcccCCHHHHHHHHH
Confidence            34999999999999999999974

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=83.64  E-value=0.5  Score=33.09  Aligned_cols=22  Identities=14%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|++.|.....|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            3599999999999999999997

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=83.60  E-value=0.6  Score=31.77  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             ceecccccccccCHHHHHHhh
Q 009730          409 PLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      +|.|++|+..|.....|..|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQ   32 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHH
T ss_pred             ceECCCCCchhCCHHHHHHHH
Confidence            499999999999999999997

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=83.57  E-value=0.54  Score=33.03  Aligned_cols=21  Identities=19%  Similarity=0.699  Sum_probs=17.5

Q ss_pred             ceecccccccccCHHHHHHhh
Q 009730          409 PLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      +|.|++|+..|.+...|..|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~   21 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHI   21 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHH
Confidence            378888888888888888886

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.30  E-value=0.55  Score=31.77  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            34999999999999999999974

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.27  E-value=0.7  Score=31.92  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.9

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            45999999999999999999974

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.23  E-value=0.67  Score=31.42  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHH
Confidence            35999999999999999999963

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.11  E-value=0.63  Score=31.57  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQR   33 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCchHHHHHHHH
Confidence            34999999999999999999973

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=83.04  E-value=0.66  Score=27.74  Aligned_cols=22  Identities=18%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             ceecc--cccccccCHHHHHHhhc
Q 009730          409 PLICS--LCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CE--ICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|+  +|+..|.....|..|+.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            48999  99999999999999974

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.02  E-value=0.68  Score=31.39  Aligned_cols=22  Identities=14%  Similarity=0.063  Sum_probs=20.1

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQV   33 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEEccccChhhCCHHHHHHHHH
Confidence            4999999999999999999963

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.00  E-value=0.41  Score=32.20  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQK   33 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHH
T ss_pred             CCeECcccCcccCCHHHHHHHHH
Confidence            34999999999999999999973

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.99  E-value=0.59  Score=31.93  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CcCCCCCCchhCCHHHHHHHHH
Confidence            4999999999999999999973

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=82.82  E-value=0.59  Score=33.30  Aligned_cols=22  Identities=23%  Similarity=0.634  Sum_probs=19.1

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.+...|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHHHH
Confidence            4889999999999999998874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=82.59  E-value=0.71  Score=32.39  Aligned_cols=22  Identities=32%  Similarity=0.739  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.+...|..|+.
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~   50 (57)
T 1bbo_A           29 PYHCTYCNFSFKTKGNLTKHMK   50 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCCCchhcCHHHHHHHHH
Confidence            4999999999999999999974

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.56  E-value=0.5  Score=32.10  Aligned_cols=23  Identities=17%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            34999999999999999999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=82.24  E-value=0.65  Score=31.47  Aligned_cols=23  Identities=22%  Similarity=0.652  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|...|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVR   31 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999973

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=82.09  E-value=0.65  Score=33.91  Aligned_cols=22  Identities=14%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             CceeccccccccCCHHHHHHhh
Q 009730          246 KSAWCELCRVDCTSLQILEQHR  267 (527)
Q Consensus       246 k~~~CeVCqV~cnSe~vy~sHl  267 (527)
                      ...+|+.|+++|++-.+|.+|.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhh
Confidence            4679999999999999999985

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=82.03  E-value=0.64  Score=32.64  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.+...|..|+.
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~   25 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLR   25 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHH
T ss_pred             CccCCCCcchhCChHHHHHHHH
Confidence            4899999999999999999974

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.93  E-value=0.6  Score=31.68  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.7

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTH
T ss_pred             CCeECCcCCchhCCHHHHHHHHH
Confidence            34999999999999999999973

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=81.82  E-value=0.71  Score=33.74  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      ..+.|+.|+|.|++-.+|..|.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhh
Confidence            3489999999999999999995

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=81.68  E-value=0.81  Score=32.11  Aligned_cols=22  Identities=27%  Similarity=0.634  Sum_probs=20.1

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|.+|+..|.....|..|+.
T Consensus        32 ~~~C~~C~~~f~~~~~l~~H~~   53 (57)
T 3uk3_C           32 PYKCEFCEYAAAQKTSLRYHLE   53 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcCCCCCcchhCCHHHHHHHHH
Confidence            3999999999999999999974

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=81.51  E-value=0.84  Score=28.21  Aligned_cols=22  Identities=23%  Similarity=0.717  Sum_probs=19.8

Q ss_pred             ceecc--cccccccCHHHHHHhhc
Q 009730          409 PLICS--LCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CE--ICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|+  +|+..|.....|..|+.
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~   25 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHH
Confidence            48898  99999999999999974

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.47  E-value=0.81  Score=33.79  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=19.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.+...|..|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~   30 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHER   30 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            34899999999999999998874

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.36  E-value=0.8  Score=32.84  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=22.0

Q ss_pred             eecccccccccCHHHHHHhhchhHH
Q 009730          410 LICSLCNVKCDTKEVFGRHLSGKKH  434 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~GKKH  434 (527)
                      |.|-||.+.|.+...|..|+ +++|
T Consensus         6 FiCP~C~~~l~s~~~L~~Hy-e~~H   29 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHY-EAVH   29 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHH-HHHT
T ss_pred             cCCcHHHHHcCCHHHHHHHH-Hhcc
Confidence            99999999999999999998 5555

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.11  E-value=0.83  Score=33.71  Aligned_cols=21  Identities=14%  Similarity=0.583  Sum_probs=19.7

Q ss_pred             eecccccccccCHHHHHHhhc
Q 009730          410 LICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      |.|++|+..|.....|..|+.
T Consensus        38 ~~C~~C~~~f~~~~~L~~H~~   58 (70)
T 1x5w_A           38 FKCNYCSFDTKQPSNLSKHMK   58 (70)
T ss_dssp             EECSSSSCEESSHHHHHHHHH
T ss_pred             EeCCCCCCccCCHHHHHHHHH
Confidence            999999999999999999973

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=80.91  E-value=0.16  Score=32.44  Aligned_cols=22  Identities=14%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~   23 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIK   23 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTT
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            4899999999999999999974

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.90  E-value=0.84  Score=33.97  Aligned_cols=21  Identities=14%  Similarity=0.219  Sum_probs=19.6

Q ss_pred             eecccccccccCHHHHHHhhc
Q 009730          410 LICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      |.|++|+..|.....|..|+.
T Consensus        43 ~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           43 YKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHH
Confidence            999999999999999999973

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=80.88  E-value=0.8  Score=32.83  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             cCceeccccccccCCHHHHHHhhc
Q 009730          245 LKSAWCELCRVDCTSLQILEQHRN  268 (527)
Q Consensus       245 ~k~~~CeVCqV~cnSe~vy~sHl~  268 (527)
                      .+.+.|.+|.+.|.+...|..|+.
T Consensus         3 ~EGFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            3 SEGFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             SEEEECTTTCCEESSHHHHHHHHH
T ss_pred             CcccCCcHHHHHcCCHHHHHHHHH
Confidence            356899999999999999999984

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=80.74  E-value=0.86  Score=33.02  Aligned_cols=21  Identities=19%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             eecccccccccCHHHHHHhhc
Q 009730          410 LICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      |.|++|+..|.+...|..|+.
T Consensus        41 ~~C~~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A           41 YPCPFCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             EECTTTCCEESCHHHHHHHHH
T ss_pred             eECCCCCCccCCHHHHHHHHH
Confidence            999999999999999999974

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.69  E-value=0.84  Score=34.30  Aligned_cols=23  Identities=17%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCcCchhCCHHHHHHHHH
Confidence            35999999999999999999973

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=80.48  E-value=0.58  Score=31.85  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHK   33 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHH
T ss_pred             CCcccCccCcccCCHHHHHHHHH
Confidence            34999999999999999999973

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=80.47  E-value=0.62  Score=42.36  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=23.7

Q ss_pred             eecccccccccCHHHHHHhhchhHHHHHHH
Q 009730          410 LICSLCNVKCDTKEVFGRHLSGKKHIAKLK  439 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~GKKH~~kLK  439 (527)
                      =+||+|.+.|..   |+.|+.+.+|..-++
T Consensus        88 GyCE~C~~~y~~---l~~H~~s~~Hr~fa~  114 (144)
T 4f9c_B           88 GYCECCLQKYED---LETHLLSEQHRNFAQ  114 (144)
T ss_dssp             CEETTTTEECSC---HHHHHHSHHHHHHHT
T ss_pred             CCccchhhhhhh---HHHHcCCHHHHHHHh
Confidence            589999999995   889999999987663

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.39  E-value=0.72  Score=31.16  Aligned_cols=21  Identities=24%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             ceecccccccccCHHHHHHhh
Q 009730          409 PLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      +|.|++|+..|.....|..|+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQ   32 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHH
T ss_pred             CeeCCCCCCccCCHHHHHHHH
Confidence            499999999999999999996

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=80.22  E-value=0.87  Score=32.37  Aligned_cols=22  Identities=32%  Similarity=0.715  Sum_probs=20.1

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|.+|+..|.+...|..|+.
T Consensus        30 ~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A           30 PYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            3999999999999999999964

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.18  E-value=0.92  Score=33.75  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.....|..|+.
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~   35 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQR   35 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHH
Confidence            45999999999999999999974

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=80.18  E-value=0.86  Score=33.03  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYV   31 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHH
Confidence            35999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	527
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.24
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.01
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.89
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.82
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	96.05
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	95.23
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	95.19
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.08
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	94.8
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	94.68
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	92.65
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	91.31
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	90.04
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	89.08
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	88.76
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	88.31
d1fu9a_	36	U-shaped transcription factor, different fingers {	85.7
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	85.15
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	83.9
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	83.73
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	83.08
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	82.5

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.24  E-value=5.6e-07  Score=68.98  Aligned_cols=36  Identities=36%  Similarity=0.491  Sum_probs=32.2

Q ss_pred             cCceeccccccccCCHHHHHHhhcchHHHHHHHHHH
Q 009730          245 LKSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIE  280 (527)
Q Consensus       245 ~k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~  280 (527)
                      ....+|+||++.|+|..++.+|+.||+|+|+|+..+
T Consensus        19 d~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          19 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CchhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            345699999999999999999999999999998643

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.01  E-value=2.8e-06  Score=65.00  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=30.7

Q ss_pred             eecccccccccCHHHHHHhhchhHHHHHHHhcc
Q 009730          410 LICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFE  442 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~  442 (527)
                      ..|+|||.+|||..+-++|..||+|+++|+...
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            489999999999999999999999999998753

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.6e-06  Score=65.93  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=33.3

Q ss_pred             ceecccccccccCHHHHHHhhchhHHHHHHHhccC
Q 009730          409 PLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEG  443 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~g  443 (527)
                      -|+|.+|+..|.|+.+|..|+++|||.++||++..
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             EEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            39999999999999999999999999999999975

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=4e-06  Score=66.27  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=33.4

Q ss_pred             CceeccccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 009730          246 KSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIEE  281 (527)
Q Consensus       246 k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~~  281 (527)
                      ..+||.+|.+.|.++.+|.+|.++|+|+|+|++|+.
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            458999999999999999999999999999999853

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.05  E-value=0.0017  Score=51.43  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             CceeccccccccCCHHHHHHhhcchHHHHHHHHHH
Q 009730          246 KSAWCELCRVDCTSLQILEQHRNGKRHRKNLLRIE  280 (527)
Q Consensus       246 k~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLkaL~  280 (527)
                      ...+|.||.+...++++--+|+.||||+++++..-
T Consensus        31 td~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999998653

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0029  Score=46.85  Aligned_cols=38  Identities=32%  Similarity=0.534  Sum_probs=34.0

Q ss_pred             eecccccccccCHHHHHHhhchhHHHHHHHhccCCccc
Q 009730          410 LICSLCNVKCDTKEVFGRHLSGKKHIAKLKRFEGHQAM  447 (527)
Q Consensus       410 l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~~g~~~~  447 (527)
                      -.|.+|+|.|.++.....|+..+.|+.++|..-+.++-
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~v~~ql~   44 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQLD   44 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCSSCC
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHHHHHHhHhh
Confidence            36999999999999999999999999999998766543

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.19  E-value=0.0047  Score=48.92  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=30.8

Q ss_pred             ceecccccccccCHHHHHHhhchhHHHHHHHhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      ...|.+|+++..|+.+--+|..||||+.|++..
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0031  Score=42.06  Aligned_cols=28  Identities=32%  Similarity=0.665  Sum_probs=25.6

Q ss_pred             ceecccccccccCHHHHHHhhchhHHHH
Q 009730          409 PLICSLCNVKCDTKEVFGRHLSGKKHIA  436 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~GKKH~~  436 (527)
                      +|.|..||+.|.++.++.+|+.+|-|.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhcc
Confidence            4899999999999999999999998853

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0086  Score=46.13  Aligned_cols=33  Identities=30%  Similarity=0.618  Sum_probs=28.8

Q ss_pred             ceecccccccc--cCHHHHHHhhchhHHHHHHHhc
Q 009730          409 PLICSLCNVKC--DTKEVFGRHLSGKKHIAKLKRF  441 (527)
Q Consensus       409 ~l~CEICNV~C--nS~~v~~~Hl~GKKH~~kLKk~  441 (527)
                      .|+|+-|++.+  +|..+=..|++|+||+.+++..
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~y   37 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHH
Confidence            39999999888  5677778999999999999765

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0092  Score=45.94  Aligned_cols=32  Identities=25%  Similarity=0.599  Sum_probs=28.6

Q ss_pred             ceeccccccccC--CHHHHHHhhcchHHHHHHHH
Q 009730          247 SAWCELCRVDCT--SLQILEQHRNGKRHRKNLLR  278 (527)
Q Consensus       247 ~~~CeVCqV~cn--Se~vy~sHl~GKKHkKnLka  278 (527)
                      ..||+.|++.++  +.++=+.|+.|+||+.|++.
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~   36 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD   36 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHH
Confidence            479999999996  78888999999999999765

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.65  E-value=0.027  Score=38.72  Aligned_cols=26  Identities=38%  Similarity=0.712  Sum_probs=22.3

Q ss_pred             CceecccccccccCHHHHHHhhchhHHH
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLSGKKHI  435 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~GKKH~  435 (527)
                      .+|.|++|++.|....+|..|+  +.|.
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~--r~Ht   31 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHL--KVHT   31 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHH--GGGT
T ss_pred             ccccCCCCCCcccChHHHHHHc--cccC
Confidence            3599999999999999999997  3553

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.045  Score=37.48  Aligned_cols=23  Identities=17%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|+..|....+|..|+.
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHcc
Confidence            35999999999999999999964

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.04  E-value=0.072  Score=34.91  Aligned_cols=22  Identities=18%  Similarity=0.599  Sum_probs=20.2

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|++|+..|.-...|..|+.
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCC
Confidence            4999999999999999999973

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=89.08  E-value=0.089  Score=34.52  Aligned_cols=21  Identities=24%  Similarity=0.667  Sum_probs=19.8

Q ss_pred             ceecccccccccCHHHHHHhh
Q 009730          409 PLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      +|.|++|+..|.....|..|+
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~   22 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHY   22 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHccccc
Confidence            499999999999999999997

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.76  E-value=0.1  Score=35.61  Aligned_cols=26  Identities=23%  Similarity=0.566  Sum_probs=22.6

Q ss_pred             CceecccccccccCHHHHHHhhchhHHH
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLSGKKHI  435 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~GKKH~  435 (527)
                      .+|.|.+|+..|.....|..|+  +.|+
T Consensus        10 KPy~C~~C~k~F~~~~~L~~H~--r~H~   35 (37)
T d1p7aa_          10 KPFQCPDCDRSFSRSDHLALHR--KRHM   35 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHH--GGGT
T ss_pred             cCeEeCCCCCEecCHHHHHHHH--hcCc
Confidence            4599999999999999999997  4554

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.11  Score=35.32  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=20.4

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|+..|.....|..|+
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~   28 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHF   28 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHH
T ss_pred             CCEECCCCCCCcCCHhHHHHhC
Confidence            3599999999999999999997

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.70  E-value=0.18  Score=35.08  Aligned_cols=22  Identities=14%  Similarity=0.513  Sum_probs=19.8

Q ss_pred             CceeccccccccCCHHHHHHhh
Q 009730          246 KSAWCELCRVDCTSLQILEQHR  267 (527)
Q Consensus       246 k~~~CeVCqV~cnSe~vy~sHl  267 (527)
                      ...||..|+|+|++-.+|.+|.
T Consensus         7 ~~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             hhhHHhhCCceehhHHHHHHHH
Confidence            3579999999999999999985

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.15  E-value=0.23  Score=34.51  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=20.1

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|++|+..|.....|..|+
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~   25 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHI   25 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccC
Confidence            3599999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.90  E-value=0.28  Score=32.97  Aligned_cols=22  Identities=18%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             CceecccccccccCHHHHHHhh
Q 009730          408 IPLICSLCNVKCDTKEVFGRHL  429 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl  429 (527)
                      .+|.|+.|+..|.....|..|+
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~   27 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQ   27 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             CCeeCCCCCCEeCchHHhHhhc
Confidence            4599999999999999999996

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.73  E-value=0.17  Score=33.28  Aligned_cols=22  Identities=14%  Similarity=0.487  Sum_probs=20.0

Q ss_pred             ceecccccccccCHHHHHHhhc
Q 009730          409 PLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       409 ~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      +|.|.+|+..|.....|..|+.
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHH
T ss_pred             CEECCcCCCeecchHHhhhhcC
Confidence            4899999999999999999973

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.08  E-value=0.3  Score=33.33  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             CceecccccccccCHHHHHHhhc
Q 009730          408 IPLICSLCNVKCDTKEVFGRHLS  430 (527)
Q Consensus       408 ~~l~CEICNV~CnS~~v~~~Hl~  430 (527)
                      .+|.|++|.+.|.....|..|..
T Consensus        11 kpy~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          11 RRYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCEecCCCCceeeCHHHHHHhCc
Confidence            45999999999999999999974

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=0.21  Score=36.72  Aligned_cols=32  Identities=22%  Similarity=0.383  Sum_probs=29.2

Q ss_pred             ceeccccccccCCHHHHHHhhcchHHHHHHHH
Q 009730          247 SAWCELCRVDCTSLQILEQHRNGKRHRKNLLR  278 (527)
Q Consensus       247 ~~~CeVCqV~cnSe~vy~sHl~GKKHkKnLka  278 (527)
                      ..-|.+|.+.+++......|+-.+.|..+|+.
T Consensus         6 ~~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~   37 (48)
T d2yrka1           6 KPECTLCGVKYSARLSIRDHIFSKQHISKVRE   37 (48)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHH
T ss_pred             cccCcccceeeeeecchHhhhhhHHHHHHHHH
Confidence            35699999999999999999999999999874