Citrus Sinensis ID: 009732

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
MEGKTVNPKPDAEEIGAPASSRRIPSSPPDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKLQR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHcccEEEEEEEEEEEEEEEEEccEEEEEEEcccccccccccEEEccccEEEEccccEEEEEEEEccHHHHHHHHccccEEEcccEEEEEEccccccccccccccccccEEEEEEEcccEEEEEEEccEEEEEccHHHHHccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHcc
ccccEEcccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccEcccccHccccccccccccEEEEccccccccccEEccccccccccccHHHHcccccccccccHHHcccccccccccccccccccHHHHHHcccccEEEEccccccccccEcccHHHHHHHccccccccccccccHHHHHccccccccccccccHHcHcccccccEEcccEEccccccEEcHHHccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccEEEEEEEEEEEEEEEEcccEEEEEEccccccccccHHHEcccccccEEcEEEEEEEEEEccHHHHHHHHccccEEEcccEEEEEcccccccEEEEEEcccccEEEEEEEccccEEEEEEEccEEEEEEHHHHHHHcccccccHHHHHcccccccHHHHHHHHHHHHHHHHccc
megktvnpkpdaeeigapassrripssppddmglensrascnSMSAVEFEsqrmvgskeydtelptqfneengkkrelqpssprkgkyffydsphyedtgvwipvsvppmldskddewargfhsdggyfpevdmgwsqylkedkelTMWDVVVEMLLAARGKVHalakgdihgcnfswMSSHLLEQAWQEMAQTLTEAnfgnvselldaepprwladssasacmlcgvrfhpimcsrhhcrfcggifcgecskgrsllpvkfrvsdpqrvcDVCCVRlqsvqpylmnqvshaaqlptrdltdlstlrswvnfpwgqsmEYEIYKAANtirgyskvgflkpeksipDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIArrndgswsppsaissfgmgwgaqaggeLTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAgvragdggyaacytyscskgafvgcslegsvfttrtqensrfygsqsvtasdvllgsmpippAAAMLYHALEDLYQKLQR
megktvnpkpdaeeigapassrripssppDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTElptqfneengkkrelqpssprkGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTrtqensrfygsQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKLQR
MEGKTVNPKPDAEEIGapassrripssppDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSaavgtvgrvveagvragdggYAACYTYSCSKGAFVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKLQR
**************************************************************************************KYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLY*****
*******************************************************************************************DS******************************S**G**************************************************************************************WLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFR*SDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTV*************GYAACYTYSCSKGAFVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQ****
***************************PPDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTELPTQFN************SPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKLQR
****************************PDDM**E*S**************************LPTQFN**************RKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKLQR
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MEGKTVNPKPDAEEIGAPASSRRIPSSPPDDMGLENSRASCNSMSAVEFESQRMVGSKEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKLQR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query527 2.2.26 [Sep-21-2011]
Q9URW6 430 SH3 domain-containing pro yes no 0.396 0.486 0.411 3e-36
Q5RAQ2 342 SH3 domain-containing YSC yes no 0.406 0.625 0.394 1e-32
Q96HL8 342 SH3 domain-containing YSC yes no 0.406 0.625 0.394 2e-32
B0BNA1 340 SH3 domain-containing YSC yes no 0.406 0.629 0.385 7e-32
O08641 340 SH3 domain-containing YSC yes no 0.406 0.629 0.385 8e-32
Q3SZ01 341 SH3 domain-containing YSC yes no 0.406 0.627 0.389 9e-32
P32793 468 Protein YSC84 OS=Saccharo yes no 0.396 0.446 0.398 1e-31
Q6DFH5 335 SH3 domain-containing YSC N/A no 0.407 0.641 0.366 1e-29
P43603 459 LAS seventeen-binding pro no no 0.387 0.444 0.407 7e-29
A7A261 459 LAS seventeen-binding pro N/A no 0.387 0.444 0.407 7e-29
>sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1 Back     alignment and function desciption
 Score =  153 bits (387), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/221 (41%), Positives = 122/221 (55%), Gaps = 12/221 (5%)

Query: 313 PWGQSMEYEIYKAANTIRGYSKVGFLKPEKS------IPDIILRQAKGLAILSVAKVGVM 366
           P   S++ E  KA   +       F+ P ++      IP  +L  AKGL I++V K G +
Sbjct: 6   PLPSSLKSECKKAGKIL-----TSFVDPRQTLGAQEVIPPSVLTNAKGLVIMTVLKAGFL 60

Query: 367 VTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNA 426
            +  IG+GL++AR +DG+WS PSA+ + GMG GAQ G ELTDF+I+L +  AV+TF    
Sbjct: 61  FSGRIGSGLIVARLDDGTWSAPSAVMTGGMGVGAQIGSELTDFVIILNSKAAVQTFARLG 120

Query: 427 HISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTRTQEN 486
            I++G  LS A G +GR  EAG  A  GG A  ++YS +KG F G SLEGSV   R   N
Sbjct: 121 SITLGGNLSIAAGPLGRNAEAGGGASVGGMAPMFSYSKTKGLFAGVSLEGSVLVERRDAN 180

Query: 487 SRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKLQR 527
              Y    +TA  +L G +  P AA  LY  L      L R
Sbjct: 181 RSLY-RGDITAKRLLSGQVAQPAAADPLYRVLNSKIFNLNR 220

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q5RAQ2|SH3Y1_PONAB SH3 domain-containing YSC84-like protein 1 OS=Pongo abelii GN=SH3YL1 PE=2 SV=1 Back     alignment and function description
>sp|Q96HL8|SH3Y1_HUMAN SH3 domain-containing YSC84-like protein 1 OS=Homo sapiens GN=SH3YL1 PE=1 SV=1 Back     alignment and function description
>sp|B0BNA1|SH3Y1_RAT SH3 domain-containing YSC84-like protein 1 OS=Rattus norvegicus GN=Sh3yl1 PE=2 SV=1 Back     alignment and function description
>sp|O08641|SH3Y1_MOUSE SH3 domain-containing YSC84-like protein 1 OS=Mus musculus GN=Sh3yl1 PE=1 SV=1 Back     alignment and function description
>sp|Q3SZ01|SH3Y1_BOVIN SH3 domain-containing YSC84-like protein 1 OS=Bos taurus GN=SH3YL1 PE=2 SV=1 Back     alignment and function description
>sp|P32793|YSC84_YEAST Protein YSC84 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSC84 PE=1 SV=2 Back     alignment and function description
>sp|Q6DFH5|SH3Y1_XENLA SH3 domain-containing YSC84-like protein 1 OS=Xenopus laevis GN=sh3yl1 PE=2 SV=1 Back     alignment and function description
>sp|P43603|LSB3_YEAST LAS seventeen-binding protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSB3 PE=1 SV=3 Back     alignment and function description
>sp|A7A261|LSB3_YEAS7 LAS seventeen-binding protein 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=LSB3 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
255562532524 zinc ion binding protein, putative [Rici 0.984 0.990 0.733 0.0
356549190540 PREDICTED: uncharacterized protein LOC10 0.994 0.970 0.712 0.0
356555455540 PREDICTED: uncharacterized protein LOC10 0.994 0.970 0.708 0.0
225443708525 PREDICTED: uncharacterized protein LOC10 0.992 0.996 0.718 0.0
297740550 723 unnamed protein product [Vitis vinifera] 0.992 0.723 0.718 0.0
224114605476 predicted protein [Populus trichocarpa] 0.899 0.995 0.756 0.0
79318859496 RING/FYVE/PHD zinc finger-containing pro 0.924 0.981 0.716 0.0
79355914510 RING/FYVE/PHD zinc finger-containing pro 0.920 0.950 0.717 0.0
225461752522 PREDICTED: uncharacterized protein LOC10 0.958 0.967 0.681 0.0
297845902510 zinc ion binding protein [Arabidopsis ly 0.893 0.923 0.728 0.0
>gi|255562532|ref|XP_002522272.1| zinc ion binding protein, putative [Ricinus communis] gi|223538525|gb|EEF40130.1| zinc ion binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/529 (73%), Positives = 444/529 (83%), Gaps = 10/529 (1%)

Query: 1   MEGKTVNPKPDAE-EIGAPASSR--RIPSSPPDDMGLENSRASCNSMSAVEFESQRMVGS 57
           MEG +VN K   E E+     S   R+  S PD+ GLE S    +S + V   S RM  S
Sbjct: 1   MEGNSVNFKSRVEDEVDGIGKSEKPRVSDSLPDNGGLECSMEYFSSAATVGLGSPRMTIS 60

Query: 58  KEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDE 117
            E        +   + +K+  + S    GKYFFYD P  E+TGVWIPVSVPPM DS  +E
Sbjct: 61  GE-------NYPRSDAEKKGTKTSQRNVGKYFFYDPPLSEETGVWIPVSVPPMSDSDHEE 113

Query: 118 WARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHGCNFS 177
           W RGFHS+GGYFPE DMGW+ Y +++KELTMWDV+ EMLLAARGKV A+A GDI+  +FS
Sbjct: 114 WNRGFHSNGGYFPEGDMGWNHYFEKEKELTMWDVIAEMLLAARGKVGAIASGDIYKGSFS 173

Query: 178 WMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSR 237
           W+SS+LLEQAW+EMAQTLTEA FG V+E+L+A+PP+WLADS+ASACMLCGVRFHPIMCSR
Sbjct: 174 WVSSNLLEQAWEEMAQTLTEATFGKVTEILEADPPKWLADSAASACMLCGVRFHPIMCSR 233

Query: 238 HHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPT 297
           HHCRFCGGIFCGECSKGRSLLPVKFR +DPQRVCDVCCVRL+SVQPYLM+QVS+AAQLPT
Sbjct: 234 HHCRFCGGIFCGECSKGRSLLPVKFRTADPQRVCDVCCVRLESVQPYLMDQVSNAAQLPT 293

Query: 298 RDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAI 357
            DLTDLSTLRSWVNFPWGQSMEYEIYKAANTI+GY+K   LKPEKSIPD ILR+AKGLAI
Sbjct: 294 HDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIQGYNKAVCLKPEKSIPDAILRKAKGLAI 353

Query: 358 LSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTND 417
           ++VAK+G+MVTYN+GTGLVI+RR DG WSPPSAISSFGMGWGAQAGGELTDFIIVLRT+D
Sbjct: 354 ITVAKIGMMVTYNVGTGLVISRREDGLWSPPSAISSFGMGWGAQAGGELTDFIIVLRTSD 413

Query: 418 AVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGS 477
           AVKTF GNAH+SIGAGLSAAVG VGR VEA +RAGDGGYAACYTYSCSKGAFVGCSLEGS
Sbjct: 414 AVKTFCGNAHLSIGAGLSAAVGVVGRAVEADLRAGDGGYAACYTYSCSKGAFVGCSLEGS 473

Query: 478 VFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKLQ 526
           + TTR++ENSRFYGSQS+TASD+LLGS+P PPAAA+LY AL DL QK++
Sbjct: 474 IVTTRSKENSRFYGSQSITASDILLGSLPRPPAAAILYRALSDLSQKVR 522

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356549190|ref|XP_003542980.1| PREDICTED: uncharacterized protein LOC100813648 [Glycine max] Back     alignment and taxonomy information
>gi|356555455|ref|XP_003546047.1| PREDICTED: uncharacterized protein LOC100785341 [Glycine max] Back     alignment and taxonomy information
>gi|225443708|ref|XP_002266858.1| PREDICTED: uncharacterized protein LOC100241291 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740550|emb|CBI30732.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114605|ref|XP_002316808.1| predicted protein [Populus trichocarpa] gi|222859873|gb|EEE97420.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|79318859|ref|NP_001031110.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gi|332193011|gb|AEE31132.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79355914|ref|NP_174273.3| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gi|25054840|gb|AAN71910.1| unknown protein [Arabidopsis thaliana] gi|332193010|gb|AEE31131.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225461752|ref|XP_002285551.1| PREDICTED: uncharacterized protein LOC100246883 [Vitis vinifera] gi|302142862|emb|CBI20157.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297845902|ref|XP_002890832.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297336674|gb|EFH67091.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
TAIR|locus:2019362510 AT1G29800 [Arabidopsis thalian 0.920 0.950 0.693 3.4e-187
TAIR|locus:2084716485 AT3G43230 [Arabidopsis thalian 0.622 0.676 0.545 1.6e-94
SGD|S000002968 459 LSB3 "Protein containing a C-t 0.396 0.455 0.369 8.5e-33
SGD|S000001058 468 YSC84 "Actin-binding protein" 0.396 0.446 0.360 8.5e-33
ASPGD|ASPL0000012058 410 AN4168 [Emericella nidulans (t 0.392 0.504 0.383 4.7e-32
UNIPROTKB|F1NNR2294 SH3YL1 "Uncharacterized protei 0.388 0.697 0.373 2.6e-31
UNIPROTKB|Q96HL8 342 SH3YL1 "SH3 domain-containing 0.406 0.625 0.362 3.3e-31
MGI|MGI:1346118 340 Sh3yl1 "Sh3 domain YSC-like 1" 0.406 0.629 0.353 1.6e-30
POMBASE|SPAPJ696.02 430 SPAPJ696.02 "actin cortical pa 0.406 0.497 0.370 1.6e-30
RGD|1306440 340 Sh3yl1 "SH3 domain containing, 0.406 0.629 0.353 1.6e-30
TAIR|locus:2019362 AT1G29800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1815 (644.0 bits), Expect = 3.4e-187, P = 3.4e-187
 Identities = 339/489 (69%), Positives = 393/489 (80%)

Query:    38 RASCNSMSAVEFESQRMVGSKEYDTELPTQFNEENGKKRELQPSSPRKGKYFFYDSPHYE 97
             RAS    +A    SQ +  ++E D+     F EE+  KR L+P   + GKYFFYD+P  E
Sbjct:     9 RASHGDSNAGNVVSQSIENTREEDSGSCEGFVEES--KR-LEPEQQKHGKYFFYDTPLSE 65

Query:    98 DTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLL 157
             +TGVWIPVSVPPML+   +EW+RG   +GGYFPE DMGW Q   EDKELTMWDV+V+MLL
Sbjct:    66 ETGVWIPVSVPPMLEPDHEEWSRGLSFNGGYFPEGDMGWDQIFDEDKELTMWDVIVDMLL 125

Query:   158 AARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLAD 217
             AARGK  AL+ G++  C  +++S HLLEQAWQ+MA TLTEANFGN  E+L+ EPP+WL D
Sbjct:   126 AARGKASALSSGNLERCGINFLSGHLLEQAWQDMAHTLTEANFGNAREILETEPPKWLPD 185

Query:   218 SSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277
             S+ASACMLC VRFHPIMCSRHHCR+CGGIFC +CSKG+SL+PVKFRVSDPQRVCDVC VR
Sbjct:   186 SAASACMLCSVRFHPIMCSRHHCRYCGGIFCRDCSKGKSLVPVKFRVSDPQRVCDVCFVR 245

Query:   278 LQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGY-SKVG 336
             L+SVQPYLM+QVS AAQLPT DLTDLSTLRSWVNFPWGQSMEYEIYKA NT+RGY +KVG
Sbjct:   246 LESVQPYLMDQVSPAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKATNTLRGYITKVG 305

Query:   337 FLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGM 396
               + E+SIPD ILRQAKGLA+++VA+VGVMVTY IGTGLV+ARR+DGSWSPPSAISSFG+
Sbjct:   306 SSRTERSIPDAILRQAKGLAVITVARVGVMVTYKIGTGLVVARRDDGSWSPPSAISSFGL 365

Query:   397 GWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSXXXXXXXXXXXXXXXXXXXXY 456
             GWGAQAGGE  DFIIVLRT +A++TF  N H+ +GAGLS                    Y
Sbjct:   366 GWGAQAGGEFIDFIIVLRTREAIQTFGSNTHLVVGAGLSAAVGVTGRAVEADIRAGSGGY 425

Query:   457 AACYTYSCSKGAFVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYH 516
             AACYTYSCSKGAFVGCSLEGS+FTTRT ENSRFYGSQS+ ASD+LLGS+P PPAAA LY 
Sbjct:   426 AACYTYSCSKGAFVGCSLEGSIFTTRTSENSRFYGSQSLAASDILLGSLPRPPAAAALYR 485

Query:   517 ALEDLYQKL 525
             AL DLYQK+
Sbjct:   486 ALGDLYQKM 494
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0007165 "signal transduction" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=ISS
TAIR|locus:2084716 AT3G43230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000002968 LSB3 "Protein containing a C-terminal SH3 domain" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
SGD|S000001058 YSC84 "Actin-binding protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000012058 AN4168 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1NNR2 SH3YL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q96HL8 SH3YL1 "SH3 domain-containing YSC84-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1346118 Sh3yl1 "Sh3 domain YSC-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
POMBASE|SPAPJ696.02 SPAPJ696.02 "actin cortical patch component Lsb4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
RGD|1306440 Sh3yl1 "SH3 domain containing, Ysc84-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
cd11526201 cd11526, SYLF_FYVE, The SYLF domain (also called D 1e-109
cd11525199 cd11525, SYLF_SH3YL1_like, The SYLF domain (also c 1e-62
cd11524194 cd11524, SYLF, The SYLF domain (also called DUF500 2e-61
pfam04366125 pfam04366, DUF500, Family of unknown function (DUF 6e-46
COG2930227 COG2930, COG2930, Uncharacterized conserved protei 2e-42
pfam0136368 pfam01363, FYVE, FYVE zinc finger 9e-24
smart0006468 smart00064, FYVE, Protein present in Fab1, YOTB, V 6e-19
cd0006557 cd00065, FYVE, FYVE domain; Zinc-binding domain; t 4e-18
>gnl|CDD|211402 cd11526, SYLF_FYVE, The SYLF domain (also called DUF500), a novel lipid-binding module, of FYVE zinc finger domain containing proteins Back     alignment and domain information 
 Score =  323 bits (830), Expect = e-109
 Identities = 123/202 (60%), Positives = 151/202 (74%), Gaps = 1/202 (0%)

Query: 320 YEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIAR 379
            EI KAANT++ + K G L+P++SIP  +LR AKGLA L+VAK G +V+  +GTGLV+AR
Sbjct: 1   GEIRKAANTLQNFFKGGNLEPDQSIPHALLRGAKGLAFLTVAKAGFIVSGKVGTGLVVAR 60

Query: 380 RNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVG 439
             DGSWS PSAI + G+GWGAQ GGELTDF+IVLRT  AVK F G   +S+GA LS AVG
Sbjct: 61  LPDGSWSAPSAIGTAGLGWGAQVGGELTDFVIVLRTRSAVKAFCGRGQVSLGAELSVAVG 120

Query: 440 TVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTRTQENSRFYGSQSVTASD 499
            +GR  EA +RAGDGG AACY+YS SKG F G SLEGSV  TR   N +FYG + VT ++
Sbjct: 121 PLGRAAEADLRAGDGGVAACYSYSHSKGLFAGVSLEGSVVATRKDVNHKFYG-RPVTPTE 179

Query: 500 VLLGSMPIPPAAAMLYHALEDL 521
           +LLGS+P PPAA  LY AL++L
Sbjct: 180 ILLGSVPQPPAAEPLYDALDEL 201

This subfamily is composed of uncharacterized proteins from plants and stramenopiles containing a FYVE zinc finger domain followed by a SYLF domain (also called DUF500). The SYLF domain of the related protein, SH3YL1, binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity. Length = 201
>gnl|CDD|211401 cd11525, SYLF_SH3YL1_like, The SYLF domain (also called DUF500), a novel lipid-binding module, of SH3 domain containing Ysc84-like 1 (SH3YL1) and similar proteins Back     alignment and domain information
>gnl|CDD|211400 cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module Back     alignment and domain information
>gnl|CDD|218046 pfam04366, DUF500, Family of unknown function (DUF500) Back     alignment and domain information
>gnl|CDD|225482 COG2930, COG2930, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger Back     alignment and domain information
>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 527
KOG1843473 consensus Uncharacterized conserved protein [Funct 100.0
COG2930227 Uncharacterized conserved protein [Function unknow 100.0
PF04366126 DUF500: Family of unknown function (DUF500); Inter 100.0
KOG1843 473 consensus Uncharacterized conserved protein [Funct 100.0
PF0136369 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f 99.73
smart0006468 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 99.63
KOG1729288 consensus FYVE finger containing protein [General 99.54
PTZ00303 1374 phosphatidylinositol kinase; Provisional 99.48
KOG1818 634 consensus Membrane trafficking and cell signaling 99.46
KOG1819990 consensus FYVE finger-containing proteins [General 99.45
KOG1409404 consensus Uncharacterized conserved protein, conta 99.34
KOG1842505 consensus FYVE finger-containing protein [General 99.34
cd0006557 FYVE FYVE domain; Zinc-binding domain; targets pro 99.31
KOG1841 1287 consensus Smad anchor for receptor activation [Def 99.07
KOG4424623 consensus Predicted Rho/Rac guanine nucleotide exc 98.57
KOG1811 1141 consensus Predicted Zn2+-binding protein, contains 97.12
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 96.91
PF02318118 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 96.59
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 95.66
PF06577160 DUF1134: Protein of unknown function (DUF1134); In 95.51
KOG1841 1287 consensus Smad anchor for receptor activation [Def 91.19
KOG1729288 consensus FYVE finger containing protein [General 89.82
KOG0993542 consensus Rab5 GTPase effector Rabaptin-5 [Intrace 88.99
COG3874138 Uncharacterized conserved protein [Function unknow 87.42
TIGR00622112 ssl1 transcription factor ssl1. This family is bas 80.87
>KOG1843 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-64  Score=513.11  Aligned_cols=424  Identities=40%  Similarity=0.515  Sum_probs=397.9

Q ss_pred             ccccCCCCCCCCCCceeecccCCCCCCCCcccccCcccCCCcccCCCCCccccccCCceeEehhHHHHHHHhhcCcceee
Q 009732           87 KYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHAL  166 (527)
Q Consensus        87 ~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~w~~~~~~~~~l~~~dv~~~~l~~~~~Kv~al  166 (527)
                      -|++|+.|.        +|++|+|++..+.+|..|.++++||+.++++.|..+..+++++++|+|+.++..--..+-.++
T Consensus        40 Pyvl~da~g--------l~~i~~lkegflfsgr~Gsgviv~~l~dGtwsapsa~~~~g~g~g~~Vgveltd~V~ilNs~~  111 (473)
T KOG1843|consen   40 PYVLKDAPG--------LVSIPVLKEGFLFSGRAGSGVIVGYLKDGTWSAPSAIAEAGEGAGGMVGVELTDFVIILNSAL  111 (473)
T ss_pred             cceeccCCc--------ceEeeeecccccccccccCceeeeecCCCCcCcchhhhhccccchhhhHHHHHHHHHhhcchH
Confidence            477888886        899999999999999999999999999999999999999999999999998776555555667


Q ss_pred             eeccCCCCccccchhhhHHHHHHHHHHHHHhhccCCccccccCCCCCcccCCCCcccccccccccccccccccccccCce
Q 009732          167 AKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGI  246 (527)
Q Consensus       167 ~~~d~~~~~~S~~~~~~le~~~~~~~~~l~~~~~~~~~~~~~~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~i  246 (527)
                      +.....+..+.++...     |..++..|.+.+....++.++.++|.|.+++....|+.|..+|+.|+.||||||.|+.+
T Consensus       112 av~~f~~~G~itLGgn-----~svsAgPLgr~aea~a~asl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~  186 (473)
T KOG1843|consen  112 AVQSFARFGTITLGGN-----LSVSAGPLGRNAEAAASASLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGI  186 (473)
T ss_pred             hhhhhhhcCeeeecCc-----ceeccCcccccchhhhhhhhcCcCccccccccccceeeeecccceeeecchhhhhhcCc
Confidence            7777777777776432     56788888888888889999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCeeeccccCCCCCceeeCcchhhhhccchhhhhhcccccccCCcCCCCccccccceeccCCCCCHHHHHHHHH
Q 009732          247 FCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAA  326 (527)
Q Consensus       247 fC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~~~~l~~~~S~a~~~p~~dlsd~~~lR~wln~P~~~sl~~eI~KAa  326 (527)
                      ||..|+.-+..+|..+.-..++|||+.|+..|...|.+++++++++.|.+.+|++|+...|+|+|+|++.+|+++|+|++
T Consensus       187 ~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl~~~q~~~~d~~~da~qy~d~d~~Di~~s~sstn~~~~~~~e~s~~rra  266 (473)
T KOG1843|consen  187 FCRAKSILSGLVPVPFAADPLQRVLDSCAFNLESVQGSLDDQYSDAAQYADHDYTDIPTSRSSTNFPSGRSMERSIYRRA  266 (473)
T ss_pred             cchhhhhhccCCCCCcccCCHHHHHhhHhhccCCCccccccccCcccccCcccccccccccccccCcccCcchHHHHHhh
Confidence            99999999888887788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh-hccCcCCCCCCchhHHHhhcceeEEEEEeeeeEEEEEEeeeEEEEEEcCCCCcCccceEEeecceEEEEecce
Q 009732          327 NTIRGY-SKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGE  405 (527)
Q Consensus       327 ~~L~~~-~k~~~~~pd~~iP~~~l~~AkGlai~~v~K~G~~~gg~~G~GvviaR~~dG~WSaPs~i~~~g~s~Glq~G~e  405 (527)
                      ++|+.+ +++....+|..| ...+.+||||+++++.++|.+.....|+|++++|+.+|+||+|++|...|.+||.|+|+|
T Consensus       267 ~slrg~r~~~~dddded~~-~a~~srakgLa~~t~~~~g~l~~yk~~s~~~~srR~~Gs~s~~s~~s~~glgWgaq~gge  345 (473)
T KOG1843|consen  267 NSLRGYRSRVDDDDDEDSI-DAGLSRAKGLAPITVARSGVLDTYKLGSSLVVSRRNDGSWSPRSAISRFGLGWGAQAGGE  345 (473)
T ss_pred             hhcccceeecccCchhhhh-hhhhhhcccCCcccccccccccccccccccceecccCCCCCCcchhcccccccchhcccc
Confidence            999998 566667788888 889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeEEEEEeCHHHHHHhhcCCCeEEccceeEEeecccccccccccccCCCcceEEEEEeccceEEEeeeeeeEEEecchH
Q 009732          406 LTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTRTQE  485 (527)
Q Consensus       406 ~~d~Vivl~t~~al~~f~~~~~~~lGad~s~aaGp~G~~~~a~~~~~~~~~a~v~~Ys~skGlf~GvSl~G~~i~~~~d~  485 (527)
                      ..|++||+++.+|++.|..+.++.+|+..++++||.||..++++.+++++++.+++|+.+||+|+|+||++.....+.+.
T Consensus       346 y~dfiivlrd~ea~~tf~s~~h~~~Ga~~s~a~~~s~r~~esdi~a~S~~~~~~~~~s~skgaf~~~Sl~~n~a~a~ysf  425 (473)
T KOG1843|consen  346 YSDFIIVLRDYEAIQTFRSGTHRVRGAGLSAAVGPSGRAVESDIRAGSSGYSKCGTYSASKGAFVGCSLEPNIATALYSF  425 (473)
T ss_pred             cccchhhcchhhhhhccccccccccccccccccCcCccchhhcccccCCcccccccccCCCCcccccccCcceeeeeehh
Confidence            99999999999999999998999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCChhhhccCCCCCChHHHHHHHHHHHHHHhh
Q 009732          486 NSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKL  525 (527)
Q Consensus       486 N~~~YG~~~vt~~dIL~g~v~~p~~a~~L~~~L~~~~~~~  525 (527)
                      |.+|||.+.....|||. .++.|+++.+||.+|.+++++|
T Consensus       426 age~~GDl~f~kgDii~-il~ks~s~~dwwtgr~~~~egi  464 (473)
T KOG1843|consen  426 AGEQPGDLSFQKGDIIT-ILKKSDSANDWWTGRGNGYEGI  464 (473)
T ss_pred             ccCCCCCcccccCceEE-EecCCcchhhHHHhhccccccc
Confidence            99999998899999999 9999999999999999999876

>COG2930 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04366 DUF500: Family of unknown function (DUF500); InterPro: IPR007461 This entry corresponds to proteins having the Ysc84 actin binding domain (YAB) Back     alignment and domain information
>KOG1843 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>PTZ00303 phosphatidylinositol kinase; Provisional Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG1842 consensus FYVE finger-containing protein [General function prediction only] Back     alignment and domain information
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; Back     alignment and domain information
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] Back     alignment and domain information
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] Back     alignment and domain information
>KOG1729 consensus FYVE finger containing protein [General function prediction only] Back     alignment and domain information
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3874 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00622 ssl1 transcription factor ssl1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
1joc_A125 Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I 1e-10
1hyi_A65 Solution Structure Of The Eea1 Fyve Domain Complexe 4e-10
1z2q_A84 High-Resolution Solution Structure Of The Lm5-1 Fyv 2e-09
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 3e-08
2yw8_A82 Crystal Structure Of Human Run And Fyve Domain-Cont 3e-07
3t7l_A90 Crystal Structure Of The Fyve Domain Of Endofin (Zf 1e-06
1vfy_A73 Phosphatidylinositol-3-Phosphate Binding Fyve Domai 6e-06
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 8e-06
2yqm_A89 Solution Structure Of The Fyve Domain In Zinc Finge 2e-05
3mpx_A434 Crystal Structure Of The Dh And Ph-1 Domains Of Hum 3e-05
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125 Back     alignment and structure 
Iteration: 1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 213 RWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCD 272
           +W  D+    CM CG  F  +   RHHCR CG IFC ECS   +L P       P RVCD
Sbjct: 62  KWAEDNEVQNCMACGKGF-SVTVRRHHCRQCGNIFCAECSAKNALTPSS---KKPVRVCD 117
Query: 273 VCCVRLQ 279
            C   LQ
Sbjct: 118 ACFNDLQ 124
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65 Back     alignment and structure
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve Domain From Leishmania Major Length = 84 Back     alignment and structure
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82 Back     alignment and structure
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16) At 1.1a Resolution Length = 90 Back     alignment and structure
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of Vps27p Protein From Saccharomyces Cerevisiae Length = 73 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89 Back     alignment and structure
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5 Length = 434 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 3e-28
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 3e-27
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 5e-27
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 1e-25
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 1e-23
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 3e-21
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 6e-19
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 9e-17
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 1e-16
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 6e-14
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 6e-12
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 8e-06
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 3e-05
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 3e-05
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84 Back     alignment and structure
 Score =  106 bits (267), Expect = 3e-28
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 209 AEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQ 268
                W  D  A AC  CG  F   +  RHHCR CG + CG+CS+ R+ +P    +++P+
Sbjct: 10  QSKGYWQEDEDAPACNGCGCVFTTTV-RRHHCRNCGYVLCGDCSRHRAAIP-MRGITEPE 67

Query: 269 RVCDVCCVRLQS 280
           RVCD C + L+S
Sbjct: 68  RVCDACYLALRS 79
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125 Back     alignment and structure
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90 Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73 Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82 Back     alignment and structure
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
1z2q_A84 LM5-1; membrane protein, FYVE domain, zinc-finger; 99.8
1x4u_A84 Zinc finger, FYVE domain containing 27 isoform B; 99.79
3t7l_A90 Zinc finger FYVE domain-containing protein 16; str 99.78
2yw8_A82 RUN and FYVE domain-containing protein 1; structur 99.77
1vfy_A73 Phosphatidylinositol-3-phosphate binding FYVE doma 99.77
1joc_A125 EEA1, early endosomal autoantigen 1; FYVE domain, 99.75
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 99.67
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 99.66
1wfk_A88 Zinc finger, FYVE domain containing 19; riken stru 99.64
1y02_A120 CARP2, FYVE-ring finger protein sakura; zinc-bindi 99.56
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 99.54
2vrw_B406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 97.49
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 95.77
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 95.46
3ky9_A587 Proto-oncogene VAV; calponin homology domain, DBL 93.5
2csz_A76 Synaptotagmin-like protein 4; exophilin 2, granuph 91.12
1wff_A85 Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc 89.1
1wfh_A64 Zinc finger (AN1-like) family protein; ZF-AN1 doma 86.11
1wfp_A74 Zinc finger (AN1-like) family protein; ZF-AN1 doma 85.72
1wfl_A74 Zinc finger protein 216; ZF-AN1 domain, zinc bindi 84.85
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Back     alignment and structure
Probab=99.80  E-value=1.9e-20  Score=156.92  Aligned_cols=70  Identities=41%  Similarity=0.972  Sum_probs=63.4

Q ss_pred             CCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009732          209 AEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS  280 (527)
Q Consensus       209 ~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~  280 (527)
                      +..+.|+||+++..|+.|+++|+++ +||||||+||+|||+.||.++.+||. .+..+|+|||+.||..|+.
T Consensus        10 ~~~~~W~pd~~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~   79 (84)
T 1z2q_A           10 QSKGYWQEDEDAPACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRHRAAIPM-RGITEPERVCDACYLALRS   79 (84)
T ss_dssp             CCCSCCCCTTTCCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGCCEEEETT-TTEEEEEECCHHHHHHHHT
T ss_pred             CCCCccccCCCCCCCcCcCCccccc-hhcccccCCCcEEChHHhCCeEeccC-CCCCCCCEECHHHHHHHhh
Confidence            3567999999999999999999986 79999999999999999999999984 3447899999999998865
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Back     alignment and structure
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Back     alignment and structure
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Back     alignment and structure
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Back     alignment and structure
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Back     alignment and structure
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Back     alignment and structure
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 527
d1joca164 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) 7e-19
d1dvpa272 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me 3e-17
d1zbdb_124 g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat 4e-16
d1wfka_88 g.50.1.1 (A:) Zinc finger FYVE domain containing p 9e-16
d1vfya_67 g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch 3e-15
d1y02a251 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro 8e-14
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (192), Expect = 7e-19
 Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 213 RWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCD 272
           +W  D+    CM CG  F  +   RHHCR CG IFC ECS   +L P       P RVCD
Sbjct: 1   KWAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTP---SSKKPVRVCD 56

Query: 273 VCCVRLQ 279
            C   LQ
Sbjct: 57  ACFNDLQ 63
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67 Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
d1joca164 Eea1 {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1dvpa272 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 99.73
d1vfya_67 vps27p protein {Baker's yeast (Saccharomyces cerev 99.68
d1wfka_88 Zinc finger FYVE domain containing protein 19 {Mou 99.61
d1y02a251 Rififylin (FYVE-RING finger protein Sakura) {Human 99.29
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 98.85
d1wfla_74 Zinc finger A20 domain containing protein 2 {Mouse 89.43
d1wffa_85 ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus 88.29
d1wfha_64 Zinc finger A20 and AN1 domains containing protein 85.76
d1wfpa_74 Zinc finger A20 and AN1 domains containing protein 85.26
d1z60a159 TFIIH p44 subunit cysteine-rich domain {Human (Hom 81.12
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-20  Score=146.85  Aligned_cols=63  Identities=48%  Similarity=1.052  Sum_probs=58.3

Q ss_pred             CcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009732          213 RWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ  279 (527)
Q Consensus       213 ~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~  279 (527)
                      .|+||++++.|+.|+++|+++ .||||||+||+|||+.||+++.++|.   ...|+|||+.||+.|+
T Consensus         1 rW~~d~~~~~C~~C~~~F~~~-~rrHHCR~CG~v~C~~Cs~~~~~~~~---~~~~~RVC~~C~~~l~   63 (64)
T d1joca1           1 KWAEDNEVQNCMACGKGFSVT-VRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ   63 (64)
T ss_dssp             CCCCGGGCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred             CCCCcccCCcCcCcCCcccCC-ccccchhhhCCeecccccCCceecCC---CCCccEehHHHHHHhc
Confidence            499999999999999999986 79999999999999999999999874   4689999999999885
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure