Citrus Sinensis ID: 009787

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
Protein Sequence
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Secondary Structure (PSIPRED)
ccEEEcccccccEEEEEEEEEEEccccccccccccccEEEEEEccEEEEEcccccccccccccEEEEEEEccccEEEEEEEEcccccccccccEEEEEcccccccccEEEEcccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEccccEEccccccccEEEEEccEEEEEEcccccEEEEEEEccccccccccccccccEEEEEEcccccccccccccccccEEEEEEEEEccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHccccccHHHHHHHHcccccEEEccccccccccccEEEEEEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccccEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEEHHEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEEEEccccccccccccccEEEEEEcccEEEEEEEEcccccccccEEEEEccccccEEEEEEEEcccccccccEEEEEEEcccHcccccEEEEccccccccEEEEEEEEccccccHHHHHHHHHHcccccEcccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHccccEEEEcHHHEEEEHHHcccEEEEEEEcccccccccccEEcccEEEEEEcccccccccccccccccEEEEEEEHccccHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHccccHHHHHHHHHHcccccEEEcccccccccccEEEEEEEEEcccccccccccEEEEEEEEEEcccccEEEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEEEEEEEEEEEccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLiganlngtsdpyaiitcgsekrfssmvpgsrypmwgeefnfsvdelpvQIIVTIYDWDIIWKSTVLGSVIVTVesegqtgavwytldspsgqvclhiktiklpvnasrvmngyAGANARRrasldkqgptvvhqkpgplqtiFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKviipigdidersqhafinPAITIILRmgagghgvpplgspdgrvryKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAhsssiggsrrQAKIVEEtvtkpekrqpfikeEVLVGIyndvfpctaEQFFTLLFSDDSKFTNEYRaarkdsnlvmgqwhaadeydgQVREVAFRSLckspiyprdtamtesqhavlspdkkIFVFETVqqahdvpfgsyfeihgRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICtsggetnnqsstpsvtpdcn
Flexible Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRahsssiggsrrqakiveetvtkpekrqpfikEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFkiktgavnkyKKEVELMLETARSYIKICTsggetnnqsstpsvtpdcn
Low Complexity Region (SEG)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMngyaganarrraSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLeaekkekaesaLRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Disordered region (IsUnstruct)
************AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGA********************GPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT*************************************************FIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMT**QHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICT*******************
Disordered Region (DISOPRED)
*************YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAK****************************************************VLVGIYNDVFPCTAEQFFTLLFSDDSK***************************QVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET****************************
Disordered Region (DISEMBL)
********QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAE***********************KIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDT*********LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSG*****************
Disordered Region (DISPRO)
*********TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQHAFINPAITIILRMGAGGHG*PPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTM***E************************************QPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKI*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAxxxxxxxxxxxxxxxxxxxxxKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVTPDCN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	525	2.2.26 [Sep-21-2011]
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.765	0.394	0.232	3e-16
Q9FGS8	1027	C2 and GRAM domain-contai	no	no	0.868	0.444	0.198	6e-14
O42976	764	Uncharacterized membrane	yes	no	0.228	0.157	0.290	2e-09
Q5M7N9	889	Extended synaptotagmin-3	yes	no	0.24	0.141	0.313	7e-09
O43374	803	Ras GTPase-activating pro	yes	no	0.167	0.109	0.325	2e-08
C9J798	803	Putative Ras GTPase-activ	yes	no	0.167	0.109	0.325	2e-08
Q6PFQ7	802	Ras GTPase-activating pro	no	no	0.190	0.124	0.291	2e-07
Q9UPW8	1703	Protein unc-13 homolog A	no	no	0.205	0.063	0.296	5e-07
Q4KUS2	1712	Protein unc-13 homolog A	no	no	0.205	0.063	0.296	5e-07
P27715	2155	Phorbol ester/diacylglyce	no	no	0.205	0.050	0.296	5e-07

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 188/486 (38%), Gaps = 84/486 (17%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
            +L+ + L+   +L   + +G  DPY + T   + R SS+      P W E F F     
Sbjct: 534 GWLLTVALIEGVDLAAVDPSGHCDPYIVFTSNGKTRTSSIKFQKSNPQWNEIFEFDAMAD 593

Query: 73  PVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVC---LHIKT 125
           P  ++ V ++D+D  +   V LG   V  V S       VW  L     Q C   LH++ 
Sbjct: 594 PPSVLNVEVFDFDGPFDEAVSLGHAEVNFVRSNISDLADVWVPLQGKLAQACQSKLHLRI 653

Query: 126 IKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVI 185
                    V+  Y     +    + K+      Q     Q +F L  +EF+   ++C +
Sbjct: 654 FLDHTGGGDVVRDYLN---KMEKEVGKKINVRSPQTNSAFQKLFGLPQEEFLINDFTCHL 710

Query: 186 ERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-----RSQHAFINPAITIIL- 239
           +R     GR+++SA  + F+++ F  + K      DI+E      +  +  +P + + L 
Sbjct: 711 KRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMGSPIVVMTLR 770

Query: 240 -------RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKE 292
                  R+GA  H        +GR+++ F SF + N A + +    K     L  E+K 
Sbjct: 771 PNRGLDARIGAKTH------DEEGRLKFHFHSFVSFNVAQKTIMALWK--AKSLTPEQKV 822

Query: 293 KAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEE--VLVGI----YNDVFPCTA 346
           +A                    VEE     E  Q    EE  + +G+    +++VF  T 
Sbjct: 823 QA--------------------VEE-----ESEQKLQSEESGLFLGVDDVRFSEVFSLTL 857

Query: 347 E---QFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYP 403
                FF  LF             RK       Q ++   ++ +  +V  R       Y 
Sbjct: 858 PVPVSFFMELFGGG-------EVDRKAMERAGCQSYSCSPWESEKDDVYERQ-----TYY 905

Query: 404 RDT-------AMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSS 456
           RD         +T +Q   L P+K  ++ E V   H VP G YF +H R+ +E       
Sbjct: 906 RDKRISRYRGEVTSTQQKSLVPEKNGWLVEEVMTLHGVPLGDYFNLHLRYQMEESTSKPK 965

Query: 457 TIDIKV 462
           T  ++V
Sbjct: 966 TTYVRV 971

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 103/519 (19%), Positives = 202/519 (38%), Gaps = 63/519 (12%)

Query: 5    KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
            +G       +++ + L+   NL         DPY + TC  + R SS+   ++ P W E 
Sbjct: 530  QGVKANGKGWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEV 589

Query: 65   FNFSVDELPVQII-VTIYDWDIIW-KSTVLGSVIV-----TVESEGQTGAVWYTLDSPSG 117
              F   E P  ++ V ++D+D  + +   LG   +     T +             + + 
Sbjct: 590  IEFDAMEEPPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQAS 649

Query: 118  QVCLHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEF 176
            Q  L ++      N    M  Y     +     L+ + P    QK    Q +F L  +EF
Sbjct: 650  QSKLQLRIFLENKNGVETMKDYLSKVEKEVGKKLNIRSP----QKNSAFQKLFGLPHEEF 705

Query: 177  VELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-----RSQHAFI 231
            +   Y+C ++R     G++++SA  + F+SN F  + K      DID+      +  +  
Sbjct: 706  LLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLG 765

Query: 232  NPAITIILRMGAG---GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEA 288
            +P + IIL+   G    HG       +GR+ + F SF + +   R +    K     ++ 
Sbjct: 766  SPLLLIILKKNRGLDAKHGAKS-QDDEGRLSFYFQSFVSFDATSRTIMALWKTRTLSVD- 823

Query: 289  EKKEKAESALRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQ 348
                                  +A+IVEE     +   PF+  E  V + +D       +
Sbjct: 824  ---------------------HRAQIVEE---DQDVADPFLLPEA-VTVVSDADALMMSK 858

Query: 349  FFTLLFSDDSKFTNEYRAARKDSNLVMGQ----WHAADEYDGQVREVAFRSLC---KSPI 401
             +T     D +   +     +    +M +     +A+  ++ +   V  R L       +
Sbjct: 859  VYTCDLPCDVELVMKIFGGGELERKIMEKSGCLSYASTTWESKKPGVYERRLSYKYNHYV 918

Query: 402  YPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK 461
                  +T +Q    +P+ + ++   +   HDVPFG +F +H R+ ++      + +D K
Sbjct: 919  SVFGGGVTCAQQKSPAPNDEGWILNEIVALHDVPFGDHFRVHIRYEVK-----KAGVDCK 973

Query: 462  VVSAGAHFK-KWC-VIQF--KIKTGAVNKYKKEVELMLE 496
                  + K +W   I+F  +I    + K++   +++ +
Sbjct: 974  TSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFD 1012

Arabidopsis thaliana (taxid: 3702)

>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 35/155 (22%)

Query: 136 MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLP--DEFVELSYSCVIERSFLYHG 193
           ++GYA AN++R     +               IF +LP  D  ++  Y C ++R    HG
Sbjct: 185 LSGYAFANSKRNRDFHR---------------IFKVLPPEDHLID-DYGCALQRDIFLHG 228

Query: 194 RMYVSAWHICFHSNAFSRQMKVIIPIGDI--DERSQHAFINPAITIILRMGAGGHGVPPL 251
           RMY+S  HICF+S+ F     ++IP+ +I   E+   A + P    I  + A        
Sbjct: 229 RMYLSESHICFNSSIFGWVTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHA-------- 280

Query: 252 GSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTML 286
                  RY FASF +R+   + +    KN H  L
Sbjct: 281 -------RYIFASFISRDTTYQLIIAIWKNTHPFL 308

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 15  LIKLELLAAKNLIGAN------LNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           +++L L+ A++LI  +      + G SDPYA++  G++   S  +  +  P WGE + F 
Sbjct: 349 VLRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFV 408

Query: 69  VDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL-DSPSGQVCLHIK 124
           V E+P Q + V +YD D   K   LGS+++ +E   Q   V  W+ L D PSG V L ++
Sbjct: 409 VHEVPGQDLEVDLYDEDPD-KDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLE 467

Query: 125 TIKLPVNASRVMNGYAG 141
            + L   + ++     G
Sbjct: 468 WLSLLPKSEKLSEAKGG 484

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NG SDP+  +      + +S+V  S YP W E F+F +++ 
Sbjct: 132 ASRLRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDFELEKG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTL 112
             + ++V  +DWD++ ++  LG V V V+     Q    W+ L
Sbjct: 192 ASEALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFRL 234

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14.

Mus musculus (taxid: 10090)

>sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 678 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 737

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 738 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 797

Query: 119 VCLHI 123
           + LHI
Sbjct: 798 IRLHI 802

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses (By similarity). Also involved in secretory granule priming in insulin secretion (By similarity). Interacts with FBXO45 (via SRY domain); leading to the degradation of UNC13A by the proteasome.

Homo sapiens (taxid: 9606)

>sp|Q4KUS2|UN13A_MOUSE Protein unc-13 homolog A OS=Mus musculus GN=Unc13a PE=1 SV=3

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 687 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 746

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 747 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 806

Query: 119 VCLHI 123
           + LHI
Sbjct: 807 IRLHI 811

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion.

Mus musculus (taxid: 10090)

>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4

 Score = 56.2 bits (134), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 16   IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
            I L +L A+ LI  +  G SDPY     G  KR +  +     P+W E+F+F       +
Sbjct: 1159 ITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDR 1218

Query: 76   IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
            I V ++D D   KS +           LG  ++ V +      VWY L+      + SG 
Sbjct: 1219 IKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGA 1278

Query: 119  VCLHI 123
            + LHI
Sbjct: 1279 IRLHI 1283

May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
224121784	590	predicted protein [Populus trichocarpa]	0.990	0.881	0.798	0.0
359478193	588	PREDICTED: C2 and GRAM domain-containing	0.980	0.875	0.790	0.0
356519666	585	PREDICTED: C2 and GRAM domain-containing	0.984	0.883	0.772	0.0
356500100	584	PREDICTED: C2 and GRAM domain-containing	0.979	0.880	0.771	0.0
357475565	582	GRAM domain-containing protein [Medicago	0.980	0.884	0.758	0.0
22331873	594	C2 domain and GRAM domain-containing pro	0.946	0.836	0.736	0.0
449468844	598	PREDICTED: C2 and GRAM domain-containing	0.971	0.852	0.733	0.0
449484724	598	PREDICTED: LOW QUALITY PROTEIN: C2 and G	0.971	0.852	0.733	0.0
255582207	532	conserved hypothetical protein [Ricinus	0.834	0.823	0.853	0.0
297820804	586	C2 domain-containing protein [Arabidopsi	0.914	0.819	0.743	0.0

>gi|224121784|ref|XP_002330652.1| predicted protein [Populus trichocarpa] gi|222872256|gb|EEF09387.1| predicted protein [Populus trichocarpa]

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/526 (79%), Positives = 451/526 (85%), Gaps = 6/526 (1%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGD Q NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 66  MGQLKGDSQANSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 125

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGA WYTLDSPSGQVC
Sbjct: 126 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAEWYTLDSPSGQVC 185

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIK+P N++R +NGYAGAN RRR S DKQGPTVVHQKPGPLQTIF+LLPDE VE S
Sbjct: 186 LHIKTIKVPANSARAVNGYAGANPRRRISSDKQGPTVVHQKPGPLQTIFSLLPDEVVEHS 245

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITII 238
           YSC +ERSFLYHGRMYVSAW+ICFHSN FS+QMKV+IP GDIDE  RSQHAFINPA+TII
Sbjct: 246 YSCALERSFLYHGRMYVSAWNICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINPAVTII 305

Query: 239 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 298
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKNY TMLEAEKKE+AESAL
Sbjct: 306 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRGLQRAAKNYRTMLEAEKKERAESAL 365

Query: 299 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDS 358
           RAHSSSI    RQA I E+ V K  K Q FIKEEVLVGIYND+FPCTAEQFF +   D S
Sbjct: 366 RAHSSSIRSGTRQANIPEDVVQKAGKLQAFIKEEVLVGIYNDLFPCTAEQFFNICLKDGS 425

Query: 359 KFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 418
            F NEYR+ RKDSNLVMGQWHAADEYDGQVRE+ FRSLC SP+ P DTA+TE QH VLSP
Sbjct: 426 TFINEYRSVRKDSNLVMGQWHAADEYDGQVREITFRSLCNSPMCPPDTAVTEWQHFVLSP 485

Query: 419 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFK 478
           DKK  VFETVQQ HDVPFGSYFEIH RW LET  ENS  +DIK   AGAHFKKWCV+Q K
Sbjct: 486 DKKKLVFETVQQPHDVPFGSYFEIHCRWSLETNGENSCAMDIK---AGAHFKKWCVMQSK 542

Query: 479 IKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQ-SSTPSVTPD 523
           I++GA+N+YKKEV+LMLE AR+  K   S GET ++ SS+P +T D
Sbjct: 543 IRSGAINEYKKEVDLMLEMARASAKSHMSSGETTDKSSSSPIITQD 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478193|ref|XP_002273984.2| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera] gi|296084286|emb|CBI24674.3| unnamed protein product [Vitis vinifera]

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/521 (79%), Positives = 453/521 (86%), Gaps = 6/521 (1%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQTNSAY+IKLELLAAKNLIGANLNG SDPYAIITCG EKRFSSMVPGSR PM
Sbjct: 65  MGQLKGDPQTNSAYVIKLELLAAKNLIGANLNGMSDPYAIITCGEEKRFSSMVPGSRNPM 124

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVD+LPV+I VTIYDWDIIWKST+LGSV V VE+EGQTGAVWY+LDS SGQVC
Sbjct: 125 WGEEFNFSVDDLPVKINVTIYDWDIIWKSTILGSVTVPVETEGQTGAVWYSLDSTSGQVC 184

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKLPVN+SRV+NGY+GAN RRR S DKQGPT+VHQKPGPLQTIFNL PDE VE S
Sbjct: 185 LHIKTIKLPVNSSRVLNGYSGANTRRRMSSDKQGPTLVHQKPGPLQTIFNLHPDEVVEHS 244

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITII 238
           YSC +ERSFLYHGRMYVS WHICFHSN FS+QMKVIIP  DIDE  RSQHAFINPAITII
Sbjct: 245 YSCALERSFLYHGRMYVSGWHICFHSNVFSKQMKVIIPFQDIDEIKRSQHAFINPAITII 304

Query: 239 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 298
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKN+HTMLEAEKKE AES L
Sbjct: 305 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRTLQRFAKNFHTMLEAEKKENAESEL 364

Query: 299 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDS 358
           RAHSSSI G R QAKI E+++    + QPF+KEE L+ IYND FPCTAEQFF +L  DDS
Sbjct: 365 RAHSSSIKG-RSQAKISEDSLPTAIEFQPFVKEEALISIYNDAFPCTAEQFFNILLHDDS 423

Query: 359 KFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 418
            + NEYR ARKD+NLV+GQWHA DEYDGQVRE+ FRSLC SP+ P DTAMTE QHAV+SP
Sbjct: 424 NYINEYRLARKDANLVVGQWHATDEYDGQVREITFRSLCTSPMCPPDTAMTEYQHAVVSP 483

Query: 419 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFK 478
           DKK+ VFETVQQAHDVPFGS+FE+H +W LET +E+S T++IK   AGAHFKKWCV+Q K
Sbjct: 484 DKKVLVFETVQQAHDVPFGSHFEVHCKWRLETNSESSCTMEIK---AGAHFKKWCVMQSK 540

Query: 479 IKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 519
           I++GA+N+YKKEVE MLE ARSYIK  TSGGE  +  S+ S
Sbjct: 541 IRSGAINEYKKEVETMLEVARSYIKSKTSGGEIEDAPSSSS 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519666|ref|XP_003528491.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/524 (77%), Positives = 442/524 (84%), Gaps = 7/524 (1%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q + AYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 63  MGQSKVDSQASLAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 122

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 123 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 182

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           LHIKTIKL  NASR+ NGY GAN RRR   L+ QGPTVVHQKPGPLQTIF L PDE V+ 
Sbjct: 183 LHIKTIKLSGNASRI-NGYGGANPRRRMPPLESQGPTVVHQKPGPLQTIFGLHPDEVVDH 241

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITI 237
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDE  RSQHAFINPAITI
Sbjct: 242 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 301

Query: 238 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 297
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHALR LQR AKN+H MLEAEKKE AES 
Sbjct: 302 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHALRNLQRAAKNFHEMLEAEKKENAESE 361

Query: 298 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDD 357
           LRAHSSS+ G++   K  EE++ K  + QPF+KEE LVGIYN+VFPCTAEQFF LL +D 
Sbjct: 362 LRAHSSSVRGNKILDKAPEESMPKTGRLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDG 421

Query: 358 SKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 417
           S FT++YR+ RKD+NLVMGQWH ADEYDGQVRE+ FRSLC SP+ P DTAMTE QH VLS
Sbjct: 422 SNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLS 481

Query: 418 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQF 477
            DKK  VFETVQQAHDVPFGSYFE+H +W LETI E S T+DIKV   GAHFKKWCV+Q 
Sbjct: 482 LDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETINEISCTLDIKV---GAHFKKWCVMQS 538

Query: 478 KIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVT 521
           KIK+GAVN+YKKEV++ML+ ARSYIK  T   E +  SS P+ T
Sbjct: 539 KIKSGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPPAAT 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500100|ref|XP_003518872.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/521 (77%), Positives = 440/521 (84%), Gaps = 7/521 (1%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q +SAYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 61  MGQSKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 120

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 121 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 180

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           L IKTIKL  NASR+ NGY GAN RRR   L++Q PTVVHQKPGPLQTIF+L PDE V+ 
Sbjct: 181 LLIKTIKLSGNASRI-NGYGGANPRRRMPPLERQWPTVVHQKPGPLQTIFDLHPDEVVDH 239

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITI 237
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDE  RSQHAFINPAITI
Sbjct: 240 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 299

Query: 238 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESA 297
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHA R LQR AKN+H MLEAEKKE AES 
Sbjct: 300 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESE 359

Query: 298 LRAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDD 357
           LRAHSSS+ G++   K  EE++ K  K QPF+KEE LVGIYN+VFPCTAEQFF LL +D 
Sbjct: 360 LRAHSSSVRGNKILDKAPEESMPKTGKLQPFVKEEALVGIYNEVFPCTAEQFFNLLLNDG 419

Query: 358 SKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS 417
           S FT++YR+ RKD+NL+MGQWH ADEYDGQVRE+ FRSLC SP+ P DTAMTE QH VLS
Sbjct: 420 SNFTSKYRSVRKDTNLLMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLS 479

Query: 418 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQF 477
           PDK   VFETVQQAHDVPFGSYFE+H +W LETI E S T+DIKV   GAHFKKWCV+Q 
Sbjct: 480 PDKTNLVFETVQQAHDVPFGSYFEVHCKWSLETINETSCTLDIKV---GAHFKKWCVMQS 536

Query: 478 KIKTGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTP 518
           KIK+GAVN+YKKEV++ML+ ARSYIK  T   E +  SS P
Sbjct: 537 KIKSGAVNEYKKEVDVMLDVARSYIKSNTPNDEDDKASSPP 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475565|ref|XP_003608068.1| GRAM domain-containing protein [Medicago truncatula] gi|355509123|gb|AES90265.1| GRAM domain-containing protein [Medicago truncatula]

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/521 (75%), Positives = 435/521 (83%), Gaps = 6/521 (1%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD Q  SAYLIKLELLAAKNLI ANLNGTSDPY IITCG+EKRFSSMVPGSR PMWG
Sbjct: 63  QSRGDSQAGSAYLIKLELLAAKNLIAANLNGTSDPYTIITCGNEKRFSSMVPGSRNPMWG 122

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVCLH
Sbjct: 123 EEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLH 182

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           IKT K+  N++R+ NGY GAN RRR  L+KQ PTVVHQKPGPLQTIF L PDE V+ SYS
Sbjct: 183 IKTEKMSANSARI-NGYGGANTRRRIPLEKQEPTVVHQKPGPLQTIFELHPDEVVDHSYS 241

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITIILR 240
           C +ERSFLYHGRMYVS WHICFHSN FS+QMKV+IP  DIDE  RSQHAFINPAITIILR
Sbjct: 242 CALERSFLYHGRMYVSTWHICFHSNVFSKQMKVLIPFEDIDEIRRSQHAFINPAITIILR 301

Query: 241 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 300
           MGAGGHGVPPLGSPDGRVRYKFASFWNRNHA+R LQR  KN+  MLE EKKE AES LRA
Sbjct: 302 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHAVRSLQRAVKNFREMLETEKKENAESELRA 361

Query: 301 HSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKF 360
           HSSS+  S    K+ E ++ K  KRQ FIKEE LVGIYNDVFPCTAEQFF LL  DDSKF
Sbjct: 362 HSSSVRRSNIMDKVPETSMPKAGKRQTFIKEEALVGIYNDVFPCTAEQFFNLLLKDDSKF 421

Query: 361 TNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDK 420
           T++YR+ARKD+NLVMGQWH A+EYDGQVRE+ FRSLC SP+ P DTA+TE QH VLS DK
Sbjct: 422 TSKYRSARKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAITEWQHVVLSSDK 481

Query: 421 KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIK 480
           K  VFETVQQAHDVP GS FE+H +W LET  E+S T+DI+V   GAHFKKWCV+Q KIK
Sbjct: 482 KNLVFETVQQAHDVPLGSCFEVHCKWGLETTGESSCTLDIRV---GAHFKKWCVMQSKIK 538

Query: 481 TGAVNKYKKEVELMLETARSYIKICTSGGETNNQSSTPSVT 521
           +GA+N+YKKEV++ML+ ARSYIK  TS  E +  SS P+ T
Sbjct: 539 SGAINEYKKEVDVMLDVARSYIKPHTSDDENDKASSPPAAT 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331873|ref|NP_191525.2| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana] gi|17065130|gb|AAL32719.1| putative protein [Arabidopsis thaliana] gi|30725388|gb|AAP37716.1| At3g59660 [Arabidopsis thaliana] gi|332646431|gb|AEE79952.1| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/504 (73%), Positives = 420/504 (83%), Gaps = 7/504 (1%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 70  HLRGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 129

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 130 EEFNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 189

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 190 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 248

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITIILR 240
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDE  RSQHA INPAITIILR
Sbjct: 249 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 308

Query: 241 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 300
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+A+SALRA
Sbjct: 309 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRA 368

Query: 301 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSK 359
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IYNDVF  T EQ   +L +DDS 
Sbjct: 369 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDST 428

Query: 360 FTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPD 419
           +TNEYR+ARKD NL +  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPD
Sbjct: 429 YTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPD 488

Query: 420 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKI 479
           KK+ VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+V   G HFKKWC++Q KI
Sbjct: 489 KKVLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRV---GVHFKKWCLMQSKI 545

Query: 480 KTGAVNKYKKEVELMLETARSYIK 503
           K GA+++YKKEVE+MLE A SY+K
Sbjct: 546 KAGAIDEYKKEVEVMLEVALSYLK 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468844|ref|XP_004152131.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/515 (73%), Positives = 428/515 (83%), Gaps = 5/515 (0%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITIILRMGAG 244
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDE  R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 245 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 304
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 305 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEY 364
           +  S  + KI  + + K +  Q F+KEEVL  I+N VFPC+ E+FF+ L SD S +T+ +
Sbjct: 382 VRVSETKEKIPADDLPKSKNTQAFLKEEVLTSIHNGVFPCSPERFFSTLLSDGSGYTSAF 441

Query: 365 RAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFV 424
            A RKD+NLVMGQWHAADEY+GQVRE+ +RSLC SP+ P DTAMTE QH VLS DKK  V
Sbjct: 442 VAKRKDTNLVMGQWHAADEYEGQVRELTYRSLCHSPMCPPDTAMTEYQHVVLSEDKKKLV 501

Query: 425 FETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAV 484
           FETVQ AHDVPFG+ FE+H RW LE  AE+SS++DIK   AG HFKKWC++Q KIK GA+
Sbjct: 502 FETVQNAHDVPFGANFELHCRWSLEKNAEDSSSVDIK---AGVHFKKWCLMQSKIKAGAM 558

Query: 485 NKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 519
            +YK+ V+L LE A  Y+   TSG ET+  +S PS
Sbjct: 559 LEYKRAVDLRLEVALEYMNSNTSGNETDKVASAPS 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484724|ref|XP_004156962.1| PREDICTED: LOW QUALITY PROTEIN: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/515 (73%), Positives = 427/515 (82%), Gaps = 5/515 (0%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITIILRMGAG 244
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDE  R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 245 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSS 304
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKKEKAESALRAHSSS
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKAESALRAHSSS 381

Query: 305 IGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEY 364
           +  S  + KI  + + K    Q F+KEEVL  I+N VFPC+ E+FF+ L SD S +T+ +
Sbjct: 382 VRVSETKEKIPADDLPKSXNTQAFLKEEVLTSIHNGVFPCSPERFFSTLLSDGSGYTSAF 441

Query: 365 RAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFV 424
            A RKD+NLVMGQWHAADEY+GQVRE+ +RSLC SP+ P DTAMTE QH VLS DKK  V
Sbjct: 442 VAKRKDTNLVMGQWHAADEYEGQVRELTYRSLCHSPMCPPDTAMTEYQHVVLSEDKKKLV 501

Query: 425 FETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAV 484
           FETVQ AHDVPFG+ FE+H RW LE  AE+SS++DIK   AG HFKKWC++Q KIK GA+
Sbjct: 502 FETVQNAHDVPFGANFELHCRWSLEKNAEDSSSVDIK---AGVHFKKWCLMQSKIKAGAM 558

Query: 485 NKYKKEVELMLETARSYIKICTSGGETNNQSSTPS 519
            +YK+ V+L LE A  Y+   TSG ET+  +S PS
Sbjct: 559 LEYKRAVDLRLEVALEYMNSNTSGNETDKVASAPS 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582207|ref|XP_002531896.1| conserved hypothetical protein [Ricinus communis] gi|223528463|gb|EEF30495.1| conserved hypothetical protein [Ricinus communis]

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/443 (85%), Positives = 395/443 (89%), Gaps = 5/443 (1%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQ NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 75  MGQLKGDPQGNSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 134

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKSTVLGSV V VESEGQTGAVWYTLDSPSGQVC
Sbjct: 135 WGEEFNFSVDELPVQIQVTIYDWDIIWKSTVLGSVTVPVESEGQTGAVWYTLDSPSGQVC 194

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKL VN+SR MNGYAGA+ARRR SLD QGPTVVHQKPGPLQTIFNL  DE VE S
Sbjct: 195 LHIKTIKLSVNSSRAMNGYAGASARRRISLDTQGPTVVHQKPGPLQTIFNLPADEIVEHS 254

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITII 238
           YSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKVIIP+GDIDE  RSQHAFINPAITII
Sbjct: 255 YSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPLGDIDEIRRSQHAFINPAITII 314

Query: 239 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 298
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AK YH MLE +KKE+AESAL
Sbjct: 315 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRALQRAAKTYHDMLEVQKKERAESAL 374

Query: 299 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDS 358
           RAHSSSI G     KI ++ V K EK QPFIKEEVLVGI+ND FPCTAEQFF LL +D S
Sbjct: 375 RAHSSSIRGG---IKIPDDIVPKVEKHQPFIKEEVLVGIHNDAFPCTAEQFFNLLLNDGS 431

Query: 359 KFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP 418
           KFTNEYRA RKD+NL+MGQWHAADEYDGQVRE+ FRSLC SP+ P DTAMTE QHAV SP
Sbjct: 432 KFTNEYRAVRKDTNLIMGQWHAADEYDGQVREITFRSLCHSPMCPPDTAMTEYQHAVFSP 491

Query: 419 DKKIFVFETVQQAHDVPFGSYFE 441
           D+KI VFETVQ AHDVPFGSYFE
Sbjct: 492 DRKILVFETVQNAHDVPFGSYFE 514

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820804|ref|XP_002878285.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324123|gb|EFH54544.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/487 (74%), Positives = 407/487 (83%), Gaps = 7/487 (1%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD QTN+AY+IK+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 71  QMRGDTQTNAAYIIKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 130

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELPV+I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 131 EEFNFPTDELPVKISVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 190

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 191 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 249

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITIILR 240
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDE  RSQHA INPAITIILR
Sbjct: 250 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 309

Query: 241 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRA 300
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKKE+AESALRA
Sbjct: 310 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAESALRA 369

Query: 301 HSSSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSK 359
           HSSS+ GG + Q K  E+T   P K Q FIKEEVLV IYNDVF  T EQ   +L +DDS 
Sbjct: 370 HSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDST 429

Query: 360 FTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPD 419
           +TNEYR+ARKD NL +  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPD
Sbjct: 430 YTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPD 489

Query: 420 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKI 479
           KK+ VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+V   G HFKKWC++Q KI
Sbjct: 490 KKVLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRV---GVHFKKWCLMQSKI 546

Query: 480 KTGAVNK 486
           K GA+++
Sbjct: 547 KAGAIDE 553

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
TAIR|locus:2097578	594	AT3G59660 "AT3G59660" [Arabido	0.980	0.867	0.687	1.1e-195
UNIPROTKB|Q5Z6I4	1037	OSJNBa0055N24.36 "Putative Osn	0.866	0.438	0.22	3.8e-18
DICTYBASE|DDB_G0267942	898	DDB_G0267942 "GRAM domain-cont	0.390	0.228	0.247	5.7e-17
UNIPROTKB|Q66VB0	1086	Os06g0607900 "Os06g0607900 pro	0.493	0.238	0.259	2.2e-14
TAIR|locus:2157707	1027	AT5G50170 "AT5G50170" [Arabido	0.2	0.102	0.298	4.2e-13
UNIPROTKB|Q3KR37	738	GRAMD1B "GRAM domain-containin	0.302	0.215	0.239	1.1e-12
TAIR|locus:2205625	598	VAD1 "VASCULAR ASSOCIATED DEAT	0.2	0.175	0.325	1.2e-12
RGD|1305443	733	Gramd1b "GRAM domain containin	0.329	0.236	0.245	1.4e-12
MGI|MGI:1925037	738	Gramd1b "GRAM domain containin	0.302	0.215	0.239	1.4e-12
UNIPROTKB|Q8IYS0	662	GRAMD1C "GRAM domain-containin	0.365	0.290	0.239	8e-11

TAIR|locus:2097578 AT3G59660 "AT3G59660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1895 (672.1 bits), Expect = 1.1e-195, P = 1.1e-195
 Identities = 360/524 (68%), Positives = 412/524 (78%)

Query:     5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWGEE
Sbjct:    72 RGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWGEE 131

Query:    65 FNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
             FNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+I 
Sbjct:   132 FNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLNIN 191

Query:   125 TIKLPVNASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCV 184
              IKLPVNA R +            +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYSC 
Sbjct:   192 AIKLPVNAPRAVTGYAGAGRRRV-TLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCA 250

Query:   185 IERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHAFINPAITIILRMG 242
             +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDE  RSQHA INPAITIILRMG
Sbjct:   251 LERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILRMG 310

Query:   243 AGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLXXXXXXXXXXXLRAHS 302
             AGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH ML           LRAHS
Sbjct:   311 AGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSALRAHS 370

Query:   303 SSI-GGSRRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFT 361
             SS+ GG + Q K  E+T   P K Q FIKEEVLV IYNDVF  T EQ   +L +DDS +T
Sbjct:   371 SSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVLLADDSTYT 430

Query:   362 NEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKK 421
             NEYR+ARKD NL +  WH A+EYDGQVRE+ FRS+C SP+ P DTA+TE QH VLSPDKK
Sbjct:   431 NEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVVLSPDKK 490

Query:   422 IFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKT 481
             + VFETVQQ HDVPFGSYFE+H RW LE   E SS IDI+V   G HFKKWC++Q KIK 
Sbjct:   491 VLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVIDIRV---GVHFKKWCLMQSKIKA 547

Query:   482 GAVNKYKKEVELMLETARSYIKICTSGGETNN--QSSTPSVTPD 523
             GA+++YKKEVE+MLE A SY+K  +S     +  +S+  S TP+
Sbjct:   548 GAIDEYKKEVEVMLEVALSYLKSHSSSSSHGDIDKSALSSPTPE 591

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|Q5Z6I4 OSJNBa0055N24.36 "Putative Osnop" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 253 (94.1 bits), Expect = 3.8e-18, P = 3.8e-18
 Identities = 110/500 (22%), Positives = 202/500 (40%)

Query:    12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE 71
             + +L+ + L+   NL     +G SDPY + TC  + + SS+   +  P W E F F   E
Sbjct:   554 NGWLLTVALIDGTNLAATKSSGYSDPYVVFTCNGKTKTSSIKFHTLEPRWNEIFEFDAME 613

Query:    72 LPVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIK 127
              P  ++ + +YD+D  +     LG   V  ++S   +   +W  L     Q C     ++
Sbjct:   614 DPPSVMKINVYDFDGPFDEVESLGHAEVNFLKSNLSELSDIWIPLKGKLAQACQSKLHLR 673

Query:   128 LPVNASRVMXXXXXXXXXXXXSLDKQ-GPTVVHQKP---GPLQTIFNLLPDEFVELSYSC 183
             + +N SR               ++K+ G  +  + P      Q IF+L P+EF+   ++C
Sbjct:   674 IILNNSR----GTEVMKDYLDKMEKEVGKKIAVRSPHTNSAFQKIFSLPPEEFLINDFTC 729

Query:   184 VIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQHAFINPAITIILRMGA 243
              ++R  L  GR+++S   I F++N F  + K      DI++      + PA T+      
Sbjct:   730 HLKRKMLTQGRLFLSPRIIGFYTNLFGHKTKFFFLWEDIEDIQ----VMPA-TLY----- 779

Query:   244 GGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAK-NYHTMLXXXXXXXXXXXLRAHS 302
                    +GSP   +        +  H  +QL    +  +H              +    
Sbjct:   780 ------SMGSPSLLIILHKGRGMDARHGAKQLDNEGRLKFHFQSFVSFNVAHKTIMALWK 833

Query:   303 SSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVGI----YNDVFPCTAEQFFTLLFSDDS 358
             +      ++ ++VEE     + +    + +  +GI     ++VF  T     + L S   
Sbjct:   834 ARSLTPEQKVQLVEEESEMKDLQNN--ESDSFLGIEDAKMSEVFSSTKPFDVSTLMSIFE 891

Query:   359 KFTNEYRAARKDSNLV--MGQWHA--ADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA 414
                 E++   K   +   +  W +  AD Y  Q+     + L +         M+  Q +
Sbjct:   892 GGPLEHQVMEKIGCMEYSVSPWESVRADAYQRQIHYKFDKRLARH----EGEVMSTQQKS 947

Query:   415 VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCV 474
              L PDK  ++ E V     +P G YF +H R+ LE I+      +++V S G  + K C 
Sbjct:   948 PL-PDKNGWLVEEVMTLEGIPVGEYFNLHMRYQLEQISSKPKACNVQV-SIGIAWLKSCK 1005

Query:   475 IQFKIKTGAVNKYKKEVELM 494
              + KI    ++     ++ M
Sbjct:  1006 NRKKIAQEVLSSASSRLKKM 1025

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

DICTYBASE|DDB_G0267942 DDB_G0267942 "GRAM domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 182 (69.1 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
 Identities = 53/214 (24%), Positives = 101/214 (47%)

Query:   315 VEETVTKPEKRQPFIKEEV--LVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSN 372
             VE+ ++K ++ Q  ++ +      I +D F  +   F+  L+SD   F + Y   R D N
Sbjct:   473 VEQYLSKDQQPQSILESQSSDFQEILSDNFNVSVVNFYRALYSDRCNFVHSYHVKRGDMN 532

Query:   373 LVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAH 432
             + +  W   + + G +REV + +   SPI P  T + E+Q   L+  K I   +T+    
Sbjct:   533 VNVKPWTFRERF-GTIREVEYVAPVSSPIGPDKTRIQETQRYQLTRKKLIVETDTIML-- 589

Query:   433 DVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE 492
             D+P+G +F I  +W +   ++++  + I +      F K    + KI+T  V + K   +
Sbjct:   590 DIPYGDHFRIEAKWEVTETSQDTCRLSISLT---VRFVKKTWFKSKIETTTVKETKTSFD 646

Query:   493 LMLETARSYI-KICTSGGETNNQSSTPSVTPDCN 525
               ++ A+  + K+       +  SST + T + N
Sbjct:   647 KWVQLAKVEVQKMLQVKPLPSASSSTATNTTNNN 680

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q66VB0 Os06g0607900 "Os06g0607900 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 219 (82.2 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 70/270 (25%), Positives = 125/270 (46%)

Query:    14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF-SVDEL 72
             +L+ + L+    +  +N     D YA+ TC ++++ SS+   +  P W E + F ++D+ 
Sbjct:   604 WLMTVALIEGTGITNSNSKELFDMYAVFTCNAKRKTSSVKFQTSEPKWNEIYEFDAMDDP 663

Query:    73 PVQIIVTIYDWDIIWKSTVLGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIKLPV 130
             P ++ V I+D +  +  + +G   V  ++S       VW  L+    Q       +++ +
Sbjct:   664 PSRMDVAIHDANGPFDQSPIGHAEVNFLKSNLSDLTDVWLPLEGKCDQTSNPKIHLRIFL 723

Query:   131 NASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFL 190
             N SR               + K+      Q     + +FNL P+EF+   ++C ++R   
Sbjct:   724 NNSRGTEVVMNYLAKMRKEVGKKINLRSAQTNAAFRKLFNLPPEEFLIDDFTCHLKRKMP 783

Query:   191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERS----QHAFINPAITIILRMGAG-- 244
               GR++ S   I F+SN F  + K      D+D+        +  +P++TIILR G G  
Sbjct:   784 LQGRLFFSPRIIGFYSNIFGHKTKFFFLWDDVDDIQVIPPTLSIGSPSLTIILRKGRGLE 843

Query:   245 -GHGVPPLGSPDGRVRYKFASFWNRNHALR 273
               HG      P+GR++Y F SF + N A R
Sbjct:   844 AKHGAKGT-DPNGRLKYYFQSFVSFNDAHR 872

GO:0010152 "pollen maturation" evidence=IMP

TAIR|locus:2157707 AT5G50170 "AT5G50170" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
 Identities = 34/114 (29%), Positives = 54/114 (47%)

Query:   160 QKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPI 219
             QK    Q +F L  +EF+   Y+C ++R     G++++SA  + F+SN F  + K     
Sbjct:   689 QKNSAFQKLFGLPHEEFLLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLW 748

Query:   220 GDIDERS--QHAFIN---PAITIILRMGAG---GHGVPPLGSPDGRVRYKFASF 265
              DID+       F +   P + IIL+   G    HG       +GR+ + F SF
Sbjct:   749 EDIDDIQVLPPTFASLGSPLLLIILKKNRGLDAKHGAKSQDD-EGRLSFYFQSF 801

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3KR37 GRAMD1B "GRAM domain-containing protein 1B" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 41/171 (23%), Positives = 82/171 (47%)

Query:   339 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK 398
             N+VF  + ++ + LLF++ S F  ++   R+ S+++   W   +E   Q R + +     
Sbjct:   378 NEVFNFSVDKLYDLLFTN-SPFQRDFMEQRRFSDIIFHPWKK-EENGNQSRVILYTITLT 435

Query:   399 SPIYPRDTAMTESQHAV-LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSST 457
             +P+ P+   + E+Q     S + + +V +     HDVP+  YF    R+ L  +A N S 
Sbjct:   436 NPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSR 495

Query:   458 IDIKVVSAGAHFKK--WCVIQFKIKTG---AVNKYKKEVELML-ETARSYI 502
             +    VS    ++K  W +++  I+      +  Y + +E  L +T  +Y+
Sbjct:   496 LR---VSTELRYRKQPWGLVKTFIEKNFWSGLEDYFRHLESELAKTESTYL 543

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 41/126 (32%), Positives = 61/126 (48%)

Query:   151 DKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFS 210
             D Q   +   K    + +F L  DE +   ++C  + S L  G MY+   +ICF+SN F 
Sbjct:    60 DNQSEVI--SKSEEYRQLFRLPADEILVQDFNCACQESILMQGHMYLFIHYICFYSNIFG 117

Query:   211 RQMKVIIPIGDID--ERSQHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN 267
              + K IIP  +I   +R++ A I P AI I+    AGG             +Y FASF +
Sbjct:   118 YETKKIIPFAEISCVKRAKTAGIFPNAIEIL----AGGK------------KYFFASFLS 161

Query:   268 RNHALR 273
             R+ A +
Sbjct:   162 RDEAFK 167

GO:0005634 "nucleus" evidence=ISM

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

RGD|1305443 Gramd1b "GRAM domain containing 1B" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 46/187 (24%), Positives = 86/187 (45%)

Query:   339 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK 398
             N+VF  + ++ + LLF+  S F  ++   R+ S+++   W   +E   Q R + +     
Sbjct:   373 NEVFNFSVDKLYDLLFTT-SPFLRDFMEQRRFSDIIFHPWKK-EENGNQSRVILYTITLT 430

Query:   399 SPIYPRDTAMTESQHAV-LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSST 457
             +P+ P+   + E+Q     S + + +V +     HDVP+  YF    R+ L  +A N S 
Sbjct:   431 NPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSR 490

Query:   458 IDIKVVSAGAHFKK--WCVIQFKIKTG---AVNKYKKEVELML-ETARSYIKIC--TSGG 509
             +    VS    ++K  W  ++  I+      +  Y + +E  L +T  +Y+      S  
Sbjct:   491 LR---VSTELRYRKQPWGFVKTFIEKNFWSGLEDYFRHLETELTKTESTYLAEIHRQSPK 547

Query:   510 ETNNQSS 516
             E  N+SS
Sbjct:   548 EKTNKSS 554

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1925037 Gramd1b "GRAM domain containing 1B" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 41/171 (23%), Positives = 81/171 (47%)

Query:   339 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK 398
             N+VF  + ++ + LLF++ S F  ++   R+ S+++   W   +E   Q R + +     
Sbjct:   378 NEVFNFSVDKLYDLLFTN-SPFLRDFMEQRRFSDIIFHPWKK-EENGNQSRVILYTITLT 435

Query:   399 SPIYPRDTAMTESQHAV-LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSST 457
             +P+ P+   + E+Q     S + + +V +     HDVP+  YF    R+ L  +A N S 
Sbjct:   436 NPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVARNKSR 495

Query:   458 IDIKVVSAGAHFKK--WCVIQFKIKTG---AVNKYKKEVELML-ETARSYI 502
             +    VS    ++K  W  ++  I+      +  Y + +E  L +T  +Y+
Sbjct:   496 LR---VSTELRYRKQPWGFVKTFIEKNFWSGLEDYFRHLETELTKTESTYL 543

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8IYS0 GRAMD1C "GRAM domain-containing protein 1C" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
 Identities = 50/209 (23%), Positives = 103/209 (49%)

Query:   299 RAHSSSIGGSRRQAKIVEETVTKPEKRQPFIKEEVLVG--IYNDVFPCTAEQFFTLLFSD 356
             R  S S+  ++ +   ++++ T     +  + E+ L G    N +F  +A++ F LLF+ 
Sbjct:   290 RVPSKSLDLNKNEYLSLDKSSTSDSVDEENVPEKDLHGRLFINRIFHISADRMFELLFTS 349

Query:   357 DSKFTNEYRAARKDSNLVMGQWHAADEYDG-QVREVAFRSLCKSPIYPRDTAMTESQHAV 415
              S+F  ++ ++R   ++V   W A  E  G Q+R + +  +  SP+  + TA TE Q   
Sbjct:   350 -SRFMQKFASSRNIIDVVSTPWTA--ELGGDQLRTMTYTIVLNSPLTGKCTAATEKQTLY 406

Query:   416 L-SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK--W 472
               S + + ++ ++    HDVP+  YF    R+ +  I  +     ++V S    ++K  W
Sbjct:   407 KESREARFYLVDSEVLTHDVPYHDYFYTVNRYCI--IRSSKQKCRLRV-STDLKYRKQPW 463

Query:   473 CVIQFKIKTGA---VNKYKKEVE--LMLE 496
              +++  I+  +   +  Y K++E  L++E
Sbjct:   464 GLVKSLIEKNSWSSLEDYFKQLESDLLIE 492

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	525
cd13219	161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	5e-71
cd00030	102	cd00030, C2, C2 domain	5e-21
cd13220	111	cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr	3e-17
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-15
pfam00168	85	pfam00168, C2, C2 domain	8e-15
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	1e-14
smart00239	101	smart00239, C2, Protein kinase C conserved region	4e-14
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-12
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-10
pfam02893	60	pfam02893, GRAM, GRAM domain	1e-10
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	1e-09
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-09
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-08
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	4e-08
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	8e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-07
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	4e-07
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-06
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	5e-06
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	3e-05
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	3e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	8e-05
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	2e-04
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	4e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	6e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	7e-04
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	0.001
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	0.001
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	0.001
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	0.001
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.002
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.002
cd13349	135	cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe	0.002
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	0.002
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	0.003
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	0.004
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	0.004
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	0.004
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.004

>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  223 bits (571), Expect = 5e-71
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 144 ARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHIC 203
           ++    + K+      QK    Q +F L P+EF+   ++C ++R F   GR+++SA  I 
Sbjct: 1   SKMEKEVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIG 60

Query: 204 FHSNAFSRQMKVIIPIGDIDE--RSQHAF--INPAITIILRMG---AGGHGVPPLGSPDG 256
           F+SN F  + K      DI+E   S  +    +P+I IILR G      HG  P   P+G
Sbjct: 61  FYSNLFGHKTKFFFLWEDIEEIQVSPPSLSVGSPSIVIILRKGRGLDARHGAKP-QDPEG 119

Query: 257 RVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESAL 298
           R+++ F SF + NHA R +    KN     E +K+   ES L
Sbjct: 120 RLKFHFQSFVSFNHAFRTIMALWKNRSLSPEQKKQIVEESEL 161

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 87.5 bits (217), Expect = 5e-21
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           +++ ++ A+NL   +LNG SDPY  ++ G +++F + +V  +  P+W E F F V +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 75  Q-IIVTIYDWDIIWKSTVLGSVIVTVES---EGQTGAVWYTL 112
             + V ++D D   K   LG V + +      G+ G +W  L
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 77.2 bits (191), Expect = 3e-17
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 19/118 (16%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDID--ERS 226
            +L  DE +   YSC ++R  L  GR+Y+S  HICF+SN F  + K++IP  DI   E+ 
Sbjct: 4   KSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSIEKK 63

Query: 227 QHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYH 283
           + A + P AI I                     +Y FASF +R+     + R   N  
Sbjct: 64  KTAGLFPNAIQIETLTE----------------KYFFASFLSRDSTFDLITRVWSNAL 105

The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           +L A++L   + NGTSDP+  +    +   +S+V  S YP W E F F + E     + V
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
            ++DWD++ K+  LG V+ ++++  Q      W+ L
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 69.2 bits (170), Expect = 8e-15
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDEL 72
          +++ +++AKNL   +LNG SDPY  ++ G +K+    + +V  +  P+W E F F V   
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 73 PVQ-IIVTIYDWDIIWKSTVLGSVI 96
           +  + + +YD+D   K   +G V 
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE 224
            L  +E +   YSC + R+    GR+Y+S + +CF SN   +  KV+IP+ DI  
Sbjct: 1   KLPEEEKLIADYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITR 55

Length = 60

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 67.9 bits (166), Expect = 4e-14
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDE 71
            + +++++A+NL   +  G SDPY  ++   + +    + +V  +  P+W E F F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 72  LPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES 101
             +  + + +YD D   +   +G V + +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 13/122 (10%)

Query: 15  LIKLELLAAKNLIGANLN------GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           ++++ ++ A++L+  +        G SDPY I+  G++   S ++  +  P W E +   
Sbjct: 2   VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV 61

Query: 69  VDELP-VQIIVTIYDWDIIWKSTVLGSV---IVTVESEGQTGAVWYTL-DSPSGQVCLHI 123
           VDE+P  ++ + ++D D   K   LG +   + +VE +G     W  L D  SG++ L +
Sbjct: 62  VDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDE-WLPLEDVKSGRLHLKL 119

Query: 124 KT 125
           + 
Sbjct: 120 EW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ LI  +  GTSDPY  +  G  K+ +  +P +  P+W E+F+F       +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS +           LG  I+ V +      VWY L+      + SG 
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGA 122

Query: 119 VCLHI 123
           + LHI
Sbjct: 123 IRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 16  IKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           +++ ++ AK+L   +    G SDPYAI++ G+++  +  +P +  P W     F +    
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 74  VQII-VTIYDWDIIWKSTVLGSV------IVTVESEGQTGAVWYTLDS 114
            Q++ + ++D D       LG        +      GQ+   W TL S
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDK-WITLKS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 171 LLPDEFVELSYSCVIERSF-LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDI 222
           L P+E +   YSC ++R      GR+Y++   +CF S+ F     ++IP+ DI
Sbjct: 1   LPPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADI 53

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           + +++++A+NL  A+ NG SDP+       EK F +  +  +  P+W E F     E+PV
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESF-----EVPV 55

Query: 75  ------QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQT 105
                  + V +YDWD   K  +LGS  +    +E E  T
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETT 95

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           L+  KNL   + NG SDPY     G+EK  S +   +  P W E+F+  + +   QI+ +
Sbjct: 6   LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQVCLHI 123
            ++D D   K   +G   + +      QT ++   L+   G + L +
Sbjct: 66  EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 28/114 (24%)

Query: 21  LAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---- 72
           LA K+      NGT DP+A +T      ++ + + +   +  P + E F F +       
Sbjct: 11  LALKS------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64

Query: 73  ------------PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
                         ++ V ++   ++     LG V + ++   Q G+   WY L
Sbjct: 65  KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL 118

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+K+ ++   NL   +   +SDPY ++T G++K  + ++  +  P+W EE   SV     
Sbjct: 3   LLKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
            + + ++D D   K   +G   + +E
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLE 87

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGS-RYPMWGEEFNFSVDELPVQ-- 75
            L++AK L   +  G  DPY II C +++R S +  G  R P W E+F F+V E P    
Sbjct: 6   LLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV-EYPGWGG 64

Query: 76  ---IIVTIYDWDIIWKSTVLGSVIVTVE 100
              +I+ I D D       +G   + ++
Sbjct: 65  DTKLILRIMDKDNFSDDDFIGEATIHLK 92

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSE---KRFSSMVPGSRYPMWGEEFNFSV- 69
           + + +L A+NL  ++  G SDPY  ++   G +   K+ +S+  G+  P++ E F+F V 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
            ++L  V +++T+ D D + ++ V+G V++  +S G+    W   L SP   + 
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIA 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 17  KLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV-- 74
           +L +L AKNL      GT DPY  ++    +   +       P WGEEF F  D+ P   
Sbjct: 3   RLRILEAKNLP---SKGTRDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVF--DDPPPDV 57

Query: 75  ---QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS--PSGQVC--LHIK 124
               +     D     +  V+G V ++    GQ    W+ L    P  +V   + ++
Sbjct: 58  TFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLR 114

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSS---MVPGSRYPMWGEEFNFSVDE 71
           L+++ ++ A+NL   + NG SDPY  I  G +K+ +     +P +  P++G+ F      
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLG-KKKINDRDNYIPNTLNPVFGKMFELEA-T 58

Query: 72  LPVQII--VTIYDWDIIWKSTVLGSVIVTVE 100
           LP   I  +++ D+D++    ++G  ++ +E
Sbjct: 59  LPGNSILKISVMDYDLLGSDDLIGETVIDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWG 62
           P  N    I + ++ A+NL   ++NGTSDPY  +         EK+ + +   +  P++ 
Sbjct: 12  PTANR---ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFN 68

Query: 63  EEFNFSV--DEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
           E F F++  + L    +I+T+ D D + ++ ++G + +  +S G
Sbjct: 69  ESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 45.6 bits (109), Expect = 5e-06
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDERSQH 228
           F L   E +   Y   ++R    +G++Y+S  + CF S     + K+I+P+ DI+   + 
Sbjct: 7   FALPESEKLLAYYYAYLQRVLPVYGKLYISDNYFCFRSLLPGTRTKMILPLKDIENVEKE 66

Query: 229 A---FINPAITIILRMGAGGH 246
               F    + I++R    GH
Sbjct: 67  KGFRFGYSGLVIVIR----GH 83

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP- 73
           +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F   E+P 
Sbjct: 21  ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF---EVPF 77

Query: 74  -----VQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
                V +IVT+ D+D I K+  +G V++   + G
Sbjct: 78  EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
           + +A+ L   +  G +DPY II C  E   S +   +  P +  +  F   +    I + 
Sbjct: 9   VHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQ 68

Query: 80  IYDWDIIWKSTVLGSVIVTVE 100
           +++ +++     LG   ++ +
Sbjct: 69  VWNSNLL-CDEFLGQATLSAD 88

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 14  YLIKLELLAAKNLIGANLNGTSDPYAIIT-CGSEKRFSS--MVPGSRYPMWGEEFNFSV- 69
           +L  + ++ A+NL   + NG SDPY  +     ++R +    +  +  P W EEF   V 
Sbjct: 1   HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60

Query: 70  DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLDSPSGQVCLHI 123
              P+ I  T++D   + K  + G   + ++      +G    +W  LD   G++ L +
Sbjct: 61  AGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-TQGRLLLRV 118

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 10   TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFS 68
             NS YL  + L + +NL  ++ NG SDP+  +    +  + + +V  +  P+W EEF   
Sbjct: 1037 ENSGYL-TIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIE 1095

Query: 69   VD-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES 101
            V   +   + + + DWD   K+ +LG+  + +  
Sbjct: 1096 VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129

Length = 1227

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 21 LAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
          L A+ L+    +GT+D Y II  G EK  +S+   +  P+W EE +F   ELP
Sbjct: 6  LQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSF---ELP 55

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 18/91 (19%)

Query: 11  NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR--------YPMWG 62
            S   +++E+L A+NL+  + NG+SDP+  +       F   VP  +        +P++ 
Sbjct: 13  ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLF-PDVPTPKTQVKKKTLFPLFD 71

Query: 63  EEFNFSVDELPVQ-------IIVTIYDWDII 86
           E F F+V   P Q       ++ T+ D+D++
Sbjct: 72  ESFEFNVP--PEQCSVEGALLLFTVKDYDLL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQI-I 77
           ++  KNL   ++ G+SDPY I+   +E    ++ V  +  P WGEE+      LP     
Sbjct: 6   IVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTV---HLPPGFHT 62

Query: 78  VTIY--DWDIIWKSTVLGSVIVTVE 100
           V+ Y  D D + +  V+G V +T E
Sbjct: 63  VSFYVLDEDTLSRDDVIGKVSLTRE 87

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
          ++ A  L  A++ G SDP+ ++   + +  +  +  +  P W + F F + ++   + VT
Sbjct: 7  VIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVT 66

Query: 80 IYDWDIIWKSTVLGSVIV 97
          +YD D   K   LG V +
Sbjct: 67 VYDEDKDKKPEFLGKVAI 84

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 23  AKNLIGAN-LNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTI 80
           AKNL   +  N   D Y  +    E+ F +  V  S  P +GE+F F +      +   I
Sbjct: 9   AKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYI 68

Query: 81  YDWDIIWKSTVLGSVIVTVE 100
           YD D++ + +V+G V +  E
Sbjct: 69  YDRDVLRRDSVIGKVAIKKE 88

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 21/91 (23%)

Query: 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-----RSQHAFINPAITIILRMGAGGHG 247
           G +Y++ + + F S       ++ +P+G I        S     +  + I  +       
Sbjct: 19  GTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSSGENSYGLEITCK------- 71

Query: 248 VPPLGSPDGRVRYKFASFWNRNHALRQLQRT 278
                  D R   +FA F   +H+ R +   
Sbjct: 72  -------DMRN-LRFA-FKQEDHSRRDIFEL 93

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 24  KNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD 82
           +NL   +  GTSDPY     G +  + S  +  +  P+W E+F   ++++   + + ++D
Sbjct: 10  RNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD 69

Query: 83  WDIIWKSTVLGSVIVTVESE 102
           +D       +GS  V + + 
Sbjct: 70  YDRGLTDDFMGSAFVDLSTL 89

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 16 IKLELLAAKNL-IGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDELP 73
          +K+ ++AA++L +    +  +D +  +  GS    + +V  S  P+W  E F F VD+  
Sbjct: 1  LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 74 VQ---IIVTIYDWDIIWKSTVLGSVIV 97
          +Q   + + + D D    +  +G V +
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYI 87

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 23 AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQII 77
          AKNL  A       PY  +T G   + S +   +  P+W E F F V      EL +++ 
Sbjct: 9  AKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVK 68

Query: 78 VTIYDWDIIWKSTVLGSVIVTV 99
              D         LGS+ + +
Sbjct: 69 ----D---DKTGKSLGSLTLPL 83

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGE----EFNFSV 69
          + +++ ++ A+ L+G N+    DP   +  G +K+++S+  G+  P + E     F+ S 
Sbjct: 4  FQVRVRVIEARQLVGGNI----DPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESP 59

Query: 70 DELPVQIIV-TIYDWDIIWKSTVLGS 94
          DEL  +II  ++YD   +   T++GS
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIGS 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + +E+  AKNLI  + NG SDPY  +          K+ +  +  +  P+W E F F + 
Sbjct: 15  LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74

Query: 70  -DELPVQIIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
             +   ++ + ++DWD   ++  +GS+   V E        WY L
Sbjct: 75  PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 169 FNLLPDEFVELSYSCVIERSFL-YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDID--ER 225
           FN    E +   YSC   +  +   G +Y+S  H+CF+S    +++K++IP  ++   ER
Sbjct: 19  FNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVEVQKLER 78

Query: 226 SQHAFINPAITIILR 240
           + + F+   I +  +
Sbjct: 79  TSNVFMTDTIRVTTQ 93

TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRY---PMWGEEFNFSV--DEL 72
           ++ A +L   ++ GTSDPY  +    +K+  F + V   R    P++ E F F V   EL
Sbjct: 22  IIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKV--HRKTLNPVFNETFTFKVPYSEL 79

Query: 73  PVQIIV-TIYDWDIIWKSTVLGSVIVT 98
             + +V ++YD+D   K  ++G V V 
Sbjct: 80  GNKTLVFSVYDFDRFSKHDLIGEVRVP 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 25  NLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DELPVQ-I 76
           NL   + NG SDP+  +    +     K  + +   +  P + EEF + +   +L  + +
Sbjct: 24  NLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTL 83

Query: 77  IVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY 110
            +T++D DI   +  +G + + + ++G+    W 
Sbjct: 84  EITVWDKDIGKSNDYIGGLQLGINAKGERLRHWL 117

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFN 66
           +A  + L ++ A+NL   ++ G SDPY  ++   E     K+ +S+   +  P + E   
Sbjct: 12  TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALV 71

Query: 67  F-----SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSP 115
           F     +VD   V +I+ + D+D +  + ++G   V   ++GQ    W   L +P
Sbjct: 72  FDVPPENVDN--VSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DEL 72
           +L A++L   +++G +DPY  +          K+ + +   +  P++ E F F +  +EL
Sbjct: 21  VLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80

Query: 73  P-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQV 119
             + +   + D D + K+ V+G +++  ++ G  G  W  + + P  Q+
Sbjct: 81  EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQI 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 23  AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-VTIY 81
            ++L   N NG SDPY  ++ GS++  + +V  +  P W     F V +L   ++ +T++
Sbjct: 24  GRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVF 83

Query: 82  DWDIIWKSTVLG------SVIVTVESEG-------------QTGAVWYTLD 113
           D D       LG      + I+    E               TG V   LD
Sbjct: 84  DRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLD 134

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV---- 74
           E++ A++L+  +  G+S  Y  +    +K+ +   P    P+W E+  F+V +       
Sbjct: 5   EVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64

Query: 75  QIIVTIY-DWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLD 113
            + V +Y D     + + LG V +   +     +     Y L+
Sbjct: 65  VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE 107

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	525
KOG1032	590	consensus Uncharacterized conserved protein, conta	100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.85
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.8
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.8
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.8
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.79
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.78
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.77
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.77
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.77
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.77
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.76
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.76
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.75
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.75
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.75
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.75
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.75
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.74
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.74
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.74
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.73
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.73
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.73
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.72
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.72
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.72
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.71
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.71
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.71
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.71
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.71
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.7
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.7
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.7
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.7
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.69
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.69
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.69
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.69
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.69
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.69
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.68
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.68
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.68
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.67
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.67
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.67
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.67
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.67
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.66
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.66
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.66
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.66
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.65
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.65
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.65
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.64
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.64
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.64
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.64
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.64
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.63
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.63
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.63
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.63
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.62
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.61
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.61
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.61
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.6
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.6
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.59
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.59
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.59
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.58
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.58
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.58
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.57
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.56
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.55
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.55
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.55
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.55
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.55
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.55
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.54
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.53
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.52
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.51
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.51
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.51
KOG1032	590	consensus Uncharacterized conserved protein, conta	99.49
PLN03008	868	Phospholipase D delta	99.49
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.48
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.48
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.47
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.46
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.45
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.34
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.33
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.3
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.21
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.13
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.08
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	98.99
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.96
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.95
PLN02223	537	phosphoinositide phospholipase C	98.95
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.91
PLN02270	808	phospholipase D alpha	98.9
PLN02952	599	phosphoinositide phospholipase C	98.87
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.77
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.77
PLN02230	598	phosphoinositide phospholipase C 4	98.73
PLN02222	581	phosphoinositide phospholipase C 2	98.67
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.64
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.64
PLN02228	567	Phosphoinositide phospholipase C	98.63
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.3
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.29
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.26
PLN02352	758	phospholipase D epsilon	98.12
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.9
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.7
KOG4347	671	consensus GTPase-activating protein VRP [General f	97.68
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.58
PLN02964	644	phosphatidylserine decarboxylase	97.47
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.43
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.43
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.25
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.08
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.03
PF14470	96	bPH_3: Bacterial PH domain	96.8
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	96.48
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	96.44
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	96.27
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.13
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.08
KOG3837	523	consensus Uncharacterized conserved protein, conta	95.96
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	94.46
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	94.14
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	93.82
PF15627	156	CEP76-C2: CEP76 C2 domain	93.54
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	93.44
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	93.4
cd08871	222	START_STARD10-like Lipid-binding START domain of m	92.75
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	92.65
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	92.54
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	92.38
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.14
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	92.08
smart00234	206	START in StAR and phosphatidylcholine transfer pro	91.19
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	90.75
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	89.9
cd08905	209	START_STARD1-like Cholesterol-binding START domain	89.88
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	89.69
PF01852	206	START: START domain; InterPro: IPR002913 START (St	89.23
cd00177	193	START Lipid-binding START domain of mammalian STAR	88.83
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	88.56
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	87.39
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	86.74
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	85.76
cd08906	209	START_STARD3-like Cholesterol-binding START domain	85.22
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	84.85
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	84.45
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	83.76
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	83.15
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	82.56
cd08908	204	START_STARD12-like C-terminal lipid-binding START	81.53
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	80.85
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	80.76
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	80.69
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	80.07

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=100.00  E-value=1.4e-36  Score=323.42  Aligned_cols=320  Identities=20%  Similarity=0.298  Sum_probs=242.9

Q ss_pred             cccceee--ecCCcceeEeeeeeeeecccccceeEEEeCCeEEEEecCCCceeEEEEeecccee--ccccc-cccCcEEE
Q 009787          163 GPLQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQHA-FINPAITI  237 (525)
Q Consensus       163 ~~f~~lF--~lp~~E~l~~~~~c~l~~~~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~--k~~~~-~~~~~i~i  237 (525)
                      ..|...+  ++|+++.|+.+|+|++++.+.+|||||+++.||||||++|||+++.+||+++|..  |++++ .++|+|.|
T Consensus       107 ~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i  186 (590)
T KOG1032|consen  107 VNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEI  186 (590)
T ss_pred             hhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEE
Confidence            3444444  3899999999999999999999999999999999999999999999999999999  66654 56789999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHHHHHhhccCchHHHHhhhhhhhhcCC-CCCCCC-ccccccc
Q 009787          238 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHS-SSIGGS-RRQAKIV  315 (525)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s-~s~~~~-~~~~~~~  315 (525)
                      .+                ++.+|+|++|++||.+|.++..+.+..-.......  ...+.+.... ...++. ..-++..
T Consensus       187 ~t----------------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~--~~~~~l~~~~~~~~~~~~~~~~~~~  248 (590)
T KOG1032|consen  187 TT----------------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPR--ADSDYLSSVEPEVNDDQQGNVDNSQ  248 (590)
T ss_pred             ec----------------CCCcceeeecccCccHHHHHHHhhhhcccccCCcc--ccchhcccCCCCcCcccccccccCC
Confidence            96                56899999999999999977444443211110000  0000000000 000000 0000000


Q ss_pred             cc-------ccCC----CCCCCCCccccccceeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCC
Q 009787          316 EE-------TVTK----PEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEY  384 (525)
Q Consensus       316 ~~-------~~~~----~~~~~p~~~e~~~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~  384 (525)
                      ++       ..+.    ..+.+..+++. +..+.+..+++++..+|.++|+ +..|+..+++.++..++...+|..... 
T Consensus       249 ~~s~~~~s~~~~~~e~~~~~~~~~~~~~-~~v~~~~~~s~~~~~~~~~lf~-d~~~~~~~l~~~~~~~vs~~~~~~~~~-  325 (590)
T KOG1032|consen  249 SPSALQNSFDSPKEEELEHDFSCSLSRL-FGVLGRLPFSAPIGAFFSLLFG-DNTFFFFFLEDQDEIQVSPIPWKGPRS-  325 (590)
T ss_pred             CccccccccCCCcccccccccccccccc-ccccccccccccccccceeecc-CcceeeeccccccccccccccccCCCc-
Confidence            00       0000    01122222222 2468899999999999999999 677888899999999999999998766 


Q ss_pred             CCcEEEEEEEeecCCCCCCcceeEeEEEEEEecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEee
Q 009787          385 DGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVS  464 (525)
Q Consensus       385 ~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~  464 (525)
                      +...|.++|++++..++|||+|.|..+|.+.+.+...|+.|..++.+++||||++|.|.+||+|+|.+++.|+++++   
T Consensus       326 ~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~---  402 (590)
T KOG1032|consen  326 GILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVS---  402 (590)
T ss_pred             cceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecce---
Confidence            78999999999999999999999999999998777778999999999999999999999999999999999999999   


Q ss_pred             eeEEEeecceeeeeeeech--HHHHHHHHHHHHHHHHHHHhhcC
Q 009787          465 AGAHFKKWCVIQFKIKTGA--VNKYKKEVELMLETARSYIKICT  506 (525)
Q Consensus       465 ~~V~f~K~~~~K~~Ie~~~--~~~~~~~~~~~~~~~~~~~~~~~  506 (525)
                      .+|.|.+++|.+.+++..+  .+.+.+.++.++..+++..+..+
T Consensus       403 ~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~  446 (590)
T KOG1032|consen  403 TSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQE  446 (590)
T ss_pred             eEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhc
Confidence            9999999999988888876  56677777777765555444433

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.85  E-value=2e-20  Score=161.45  Aligned_cols=111  Identities=20%  Similarity=0.292  Sum_probs=98.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~   91 (525)
                      .|.|.|+|++|++|+..+ .|++||||++.++++.++|+++.+ +.||+|||+|.|.+.+....|.|+|||+|.+++|++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~   79 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER   79 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence            479999999999998877 799999999999999999999866 799999999999998766789999999999999999


Q ss_pred             eEEEEEEcc-cC--CCcccEEEEccC-----CCceEEEEEE
Q 009787           92 LGSVIVTVE-SE--GQTGAVWYTLDS-----PSGQVCLHIK  124 (525)
Q Consensus        92 iG~~~i~l~-~l--~~~~~~w~~L~~-----~~G~i~l~i~  124 (525)
                      ||.+.+++. .+  +...+.|++|.+     +.|+|+|+|.
T Consensus        80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~  120 (121)
T cd04016          80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFS  120 (121)
T ss_pred             EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEe
Confidence            999999996 45  555789999976     3377887775

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.80  E-value=1.8e-19  Score=158.86  Aligned_cols=99  Identities=25%  Similarity=0.436  Sum_probs=92.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~   91 (525)
                      .-|+|+|+|++|.||..+|..+++||||++.+++++.+|+++.+++||+|||.|+|.+.++...|+++|||+|.++.|||
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~   83 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF   83 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence            46899999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcccCCCcccEEE
Q 009787           92 LGSVIVTVESEGQTGAVWY  110 (525)
Q Consensus        92 iG~~~i~l~~l~~~~~~w~  110 (525)
                      ||.++|++..+......++
T Consensus        84 mG~A~I~l~p~~~~~~~~~  102 (168)
T KOG1030|consen   84 MGEATIPLKPLLEAQKMDY  102 (168)
T ss_pred             cceeeeccHHHHHHhhhhc
Confidence            9999999999954445555

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.1e-18  Score=150.55  Aligned_cols=112  Identities=24%  Similarity=0.358  Sum_probs=101.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      +|+|+|++|++|+..+..+.+||||.+++++...+|+++.+++||.|||+|.|.+.+. ...|.|+|||++..+++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            4789999999999999889999999999999999999999999999999999998764 678999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCCCceEEEEEEEE
Q 009787           94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI  126 (525)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~~G~i~l~i~~~  126 (525)
                      .+.+++.++  +...+.|++|.+..|++++.+.+.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence            999999988  566788999998779988777653

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.80  E-value=5.9e-19  Score=154.47  Aligned_cols=99  Identities=25%  Similarity=0.494  Sum_probs=89.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC------CCcEEEEEEEEcCCCCCC
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS   89 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~------~~~~L~~~V~d~d~~~~d   89 (525)
                      ++|+|++|+||++++..|.+||||.+.++...++|+++.+++||+|||+|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999999989999999999999999999999999999999999999865      356799999999999899


Q ss_pred             ceeEEEEEEcccCC----CcccEEEEccC
Q 009787           90 TVLGSVIVTVESEG----QTGAVWYTLDS  114 (525)
Q Consensus        90 d~iG~~~i~l~~l~----~~~~~w~~L~~  114 (525)
                      ++||++.+++.++.    .....||+|.+
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~  109 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES  109 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence            99999999999873    44578999975

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1.3e-18  Score=151.16  Aligned_cols=100  Identities=21%  Similarity=0.368  Sum_probs=91.3

Q ss_pred             EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC----
Q 009787           15 LIKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW----   87 (525)
Q Consensus        15 ~L~V~i~~A~~---L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~----   87 (525)
                      .|.|+|++|+|   |+.+|..|.+||||++.+++++.+|+++.+++||+|||+|.|.+......|.|+|||++..+    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            48999999999   89999999999999999999999999999999999999999999877778999999999874    


Q ss_pred             --CCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        88 --~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                        +|++||++.+++..+  +.....||+|..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence              899999999999988  455578999974

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.78  E-value=3.6e-18  Score=148.37  Aligned_cols=111  Identities=23%  Similarity=0.474  Sum_probs=97.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      .|+|+|++|++|+..+..|.+||||.+.+++ ..++|+++.+++||.|||+|.|.+......|.|+|||++..+++++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            4799999999999999999999999999987 567999999999999999999999877788999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCCC-----ceEEEEEEE
Q 009787           94 SVIVTVESE--GQTGAVWYTLDSPS-----GQVCLHIKT  125 (525)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~~-----G~i~l~i~~  125 (525)
                      .+.+++.++  +...+.|++|.++.     |.+.+.+.+
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~  119 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL  119 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEE
Confidence            999999998  56678899997533     566666554

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.77  E-value=5.8e-18  Score=146.88  Aligned_cols=109  Identities=27%  Similarity=0.440  Sum_probs=94.4

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787           16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        16 L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      |.|+|++|+||++++ ..|.+||||.+.++.. .++|+++++++||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            689999999999974 4678999999999765 46899999999999999999999876688999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC------CceEEEEEE
Q 009787           94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK  124 (525)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~------~G~i~l~i~  124 (525)
                      .+.++++++  +...+.||+|.+.      .|++++.++
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence            999999998  4556789999863      477766654

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=1e-17  Score=144.98  Aligned_cols=112  Identities=23%  Similarity=0.461  Sum_probs=99.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      |.|.|+|++|++|+..+..+.+||||.+++++..++|+++.++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            67999999999999999899999999999998889999999999999999999998876788999999999888999999


Q ss_pred             EEEEEcccCCCcccEEEEccCC------CceEEEEEEE
Q 009787           94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKT  125 (525)
Q Consensus        94 ~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~i~~  125 (525)
                      ++.+++.++......|+.|..+      .|++.+++++
T Consensus        81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999996666789999652      3555555543

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.77  E-value=4.5e-18  Score=147.07  Aligned_cols=110  Identities=23%  Similarity=0.376  Sum_probs=94.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~   91 (525)
                      |.|.|+|++|++|+..+..+.+||||++.+++..++|+++.+ ++||.|||.|.|.+.. ..+.|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            689999999999999999999999999999988889998754 7999999999999876 3567999999999876 899


Q ss_pred             eEEEEEEcccC--CCcccEEEEccCC---CceEEEEEE
Q 009787           92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK  124 (525)
Q Consensus        92 iG~~~i~l~~l--~~~~~~w~~L~~~---~G~i~l~i~  124 (525)
                      ||++.+++.++  +.....|++|..+   .|+|.+++.
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~  117 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT  117 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence            99999999987  4456889999763   255555543

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=7.6e-18  Score=147.75  Aligned_cols=112  Identities=24%  Similarity=0.427  Sum_probs=98.2

Q ss_pred             eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCc
Q 009787           14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST   90 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~--~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd   90 (525)
                      |+|+|+|++|++|+..+.  .+.+||||.+.++...++|+++++++||.|||+|.|.+.. ....|.|+|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999999998  8899999999999999999999999999999999999876 4678999999999988999


Q ss_pred             eeEEEEEEcccCC-----CcccEEEEccCC--------CceEEEEEEE
Q 009787           91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT  125 (525)
Q Consensus        91 ~iG~~~i~l~~l~-----~~~~~w~~L~~~--------~G~i~l~i~~  125 (525)
                      +||.+.+++.++.     .....||.|.++        .|++++++.|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999873     335789999764        4666666543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.76  E-value=1.6e-17  Score=146.94  Aligned_cols=117  Identities=22%  Similarity=0.413  Sum_probs=100.4

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCC
Q 009787            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIW   87 (525)
Q Consensus         9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~   87 (525)
                      .....|.|+|+|++|++|++.+..|.+||||++.++...++|+++++++||.|||+|.|.+.+. ...|.|+|||++..+
T Consensus        10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~   89 (136)
T cd08375          10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS   89 (136)
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence            3455799999999999999999999999999999999999999999999999999999998654 467999999999999


Q ss_pred             CCceeEEEEEEcccCCC-------cccEEEEccC-CCceEEEEEEE
Q 009787           88 KSTVLGSVIVTVESEGQ-------TGAVWYTLDS-PSGQVCLHIKT  125 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l~~-------~~~~w~~L~~-~~G~i~l~i~~  125 (525)
                      +|++||++.+++.++..       ....|..|.. ..|++++.+.+
T Consensus        90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            99999999999998721       2235666654 44888888765

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=7.9e-18  Score=147.54  Aligned_cols=111  Identities=21%  Similarity=0.370  Sum_probs=94.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC----CcEEEEEEEEcCCCC-CC
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS   89 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~----~~~L~~~V~d~d~~~-~d   89 (525)
                      .|.|+|++|++|++.+..|.+||||.+.++++.++|+++.+++||.|||.|.|.+.++    ...|.|+|||++.++ .+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            3899999999999999889999999999999999999999999999999999998653    246999999999887 89


Q ss_pred             ceeEEEEEEcccC---CCcccEEEEccCC------CceEEEEEEE
Q 009787           90 TVLGSVIVTVESE---GQTGAVWYTLDSP------SGQVCLHIKT  125 (525)
Q Consensus        90 d~iG~~~i~l~~l---~~~~~~w~~L~~~------~G~i~l~i~~  125 (525)
                      ++||++.+++.++   +.....||+|..+      .|++.+.+.+
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            9999999999987   3446789999753      3555555543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.75  E-value=7.4e-18  Score=143.29  Aligned_cols=100  Identities=17%  Similarity=0.256  Sum_probs=86.5

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~----~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d   82 (525)
                      .+..+.|+|+|++|++|+ .  .|.+||||.+++..    .+++|+++++|+||+|||+|.|++..   ....|.|+|||
T Consensus        10 ~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d   86 (118)
T cd08677          10 DKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC   86 (118)
T ss_pred             cCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence            466899999999999998 2  46799999999853    46689999999999999999999864   35569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009787           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L  112 (525)
                      +|+++++++||++.++++.+  +...++|.+|
T Consensus        87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            99999999999999999976  6667788765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=2.2e-17  Score=148.40  Aligned_cols=112  Identities=17%  Similarity=0.339  Sum_probs=96.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCcee
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL   92 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~i   92 (525)
                      .|.|+|++|++|++++..|.+||||++.++++..+|+++.+ ++||+|||+|.|.+.++ ...|.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            37899999999999999999999999999999999999876 69999999999998654 45799999999988889999


Q ss_pred             EEEEEEcccCC------CcccEEEEccCCC------------ceEEEEEEEE
Q 009787           93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI  126 (525)
Q Consensus        93 G~~~i~l~~l~------~~~~~w~~L~~~~------------G~i~l~i~~~  126 (525)
                      |++.+++..+.      ...+.||+|....            |++++.+.+.
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            99999999883      3357899998643            5566666555

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.75  E-value=2.2e-17  Score=143.26  Aligned_cols=111  Identities=24%  Similarity=0.465  Sum_probs=97.9

Q ss_pred             eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCC
Q 009787           14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII   86 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~------~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~   86 (525)
                      |+|.|+|++|++|+..+.      .|.+||||++.+++..++|+++.++.||.|+|+|.|.+.+ ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            679999999999998875      3689999999999989999999999999999999999864 467899999999987


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEE
Q 009787           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT  125 (525)
Q Consensus        87 ~~dd~iG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~l~i~~  125 (525)
                       ++++||.+.+++.++  ....+.||+|.+ ..|++++.++|
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence             889999999999988  444679999986 57999888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.75  E-value=2.2e-17  Score=144.56  Aligned_cols=109  Identities=23%  Similarity=0.420  Sum_probs=92.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      |.|+|++|+||+.  ..|.+||||++.++.  ...+|+++.+++||.|||.|.|.+......|.|+|||++..+++++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999988  678999999999973  567999999999999999999999766778999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEE
Q 009787           94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTI  126 (525)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~i~~~  126 (525)
                      ++.+++.++  ......|++|.++       .|++.+++.+.
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~  120 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM  120 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence            999999998  4556789999864       25555555554

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.75  E-value=2.2e-17  Score=142.96  Aligned_cols=111  Identities=23%  Similarity=0.381  Sum_probs=95.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd   90 (525)
                      .|.|+|++|++|+..+..+.+||||++.+.   ...++|+++.++.||.|||+|.|.+... ...|.|+|||+|.. +|+
T Consensus         1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            378999999999999988999999999985   3567899999999999999999998653 45699999999988 899


Q ss_pred             eeEEEEEEcccC--CCcccEEEEccCC-CceEEEEEEEE
Q 009787           91 VLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI  126 (525)
Q Consensus        91 ~iG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~l~i~~~  126 (525)
                      +||++.+++.++  +.....|++|.++ .|++.+++.++
T Consensus        80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~  118 (119)
T cd04036          80 HLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE  118 (119)
T ss_pred             ccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence            999999999998  5667889999863 57777777654

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.74  E-value=2.8e-17  Score=142.77  Aligned_cols=109  Identities=25%  Similarity=0.437  Sum_probs=94.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEE
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS   94 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~   94 (525)
                      |.|+|++|++|++++..|.+||||++.+++.. .+|+++.+++||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999999999999999999998654 59999999999999999999998767889999999999999999999


Q ss_pred             EEEEcccCC---CcccEEEEccCC------CceEEEEEE
Q 009787           95 VIVTVESEG---QTGAVWYTLDSP------SGQVCLHIK  124 (525)
Q Consensus        95 ~~i~l~~l~---~~~~~w~~L~~~------~G~i~l~i~  124 (525)
                      +.++++++.   ...+.|++|.+.      .|++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            999998872   236789999752      466665543

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.74  E-value=7.1e-17  Score=141.22  Aligned_cols=100  Identities=17%  Similarity=0.305  Sum_probs=91.7

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~i   92 (525)
                      ..+|+|+|++|++|+..+..|.+||||.+.++++.++|++++++.||.|||.|.|.+......|.|+|||++.. .|++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence            57899999999999999999999999999999999999999999999999999999887788899999999876 58999


Q ss_pred             EEEEEEcccCCCcccEEEEcc
Q 009787           93 GSVIVTVESEGQTGAVWYTLD  113 (525)
Q Consensus        93 G~~~i~l~~l~~~~~~w~~L~  113 (525)
                      |.+.+++.++......|++|.
T Consensus        81 G~~~~~l~~~~~~~~~~~~l~  101 (126)
T cd04046          81 GQATLSADPNDSQTLRTLPLR  101 (126)
T ss_pred             EEEEEecccCCCcCceEEEcc
Confidence            999999998866667889985

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.74  E-value=2.5e-17  Score=143.08  Aligned_cols=99  Identities=22%  Similarity=0.335  Sum_probs=87.5

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEe-cC---CCcEEEEEEEEc
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYDW   83 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v-~~---~~~~L~~~V~d~   83 (525)
                      .+.|.|+|++|++|++++ .+.+||||++++.     ..+++|++++++.||.|||+|.|.+ ..   ....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            578999999999999999 8999999999985     3467899999999999999999987 31   356799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009787           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L  112 (525)
                      +..+++++||++.+++.++  ......||+|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999998  4446789987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.73  E-value=7.1e-17  Score=140.67  Aligned_cols=99  Identities=29%  Similarity=0.592  Sum_probs=90.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEE
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGS   94 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG~   94 (525)
                      |+|+|++|++|+.++..+.+||||.+++++...+|+++.+++||.|||+|.|.+... ...|.|+|||++..+++++||.
T Consensus         2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~   81 (123)
T cd04025           2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK   81 (123)
T ss_pred             EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence            789999999999999888999999999998889999999999999999999998764 5679999999999999999999


Q ss_pred             EEEEcccC--CCcccEEEEccC
Q 009787           95 VIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        95 ~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      +.+++.++  ....+.|+.|.+
T Consensus        82 ~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          82 VVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEHHHcccCCCCCCEEECCC
Confidence            99999988  344678999976

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.73  E-value=5.9e-17  Score=141.95  Aligned_cols=110  Identities=29%  Similarity=0.533  Sum_probs=95.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC--------
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII--------   86 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~--------   86 (525)
                      .|+|+|++|++|+..+..|.+||||.+.++...++|+++.+++||.|||+|.|.+..+...|.|+|||+|..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999999999999999999999888899999999999999999999876667899999999853        


Q ss_pred             ---CCCceeEEEEEEcccCCCcccEEEEccCCCc--eEEEEEE
Q 009787           87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPSG--QVCLHIK  124 (525)
Q Consensus        87 ---~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G--~i~l~i~  124 (525)
                         +.+++||.+.+++.++....+.|+.|.++.+  .+++.|.
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~  124 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIR  124 (127)
T ss_pred             ccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEE
Confidence               4689999999999999766789999987442  2444443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.73  E-value=5.6e-17  Score=140.73  Aligned_cols=105  Identities=23%  Similarity=0.430  Sum_probs=90.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeEE
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGS   94 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~iG~   94 (525)
                      |.|+|++|++|+.+    .+||||.+.+++...+|+++++++||.|||+|.|.+.. ....|.|+|||++.. ++++||+
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~   76 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG   76 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence            78999999999887    78999999999988899999999999999999999876 467799999999977 7899999


Q ss_pred             EEEEcccCCC-------cccEEEEccCCC-----ceEEEEEEE
Q 009787           95 VIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIKT  125 (525)
Q Consensus        95 ~~i~l~~l~~-------~~~~w~~L~~~~-----G~i~l~i~~  125 (525)
                      +.++++++..       ....||+|.+..     |+|++.|.+
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999999822       235899998744     666666654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.72  E-value=5.9e-17  Score=139.52  Aligned_cols=99  Identities=15%  Similarity=0.304  Sum_probs=84.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----C--eEEEeecccCCCCCeeccEEEEEecCC----CcEEEEEEEEc
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW   83 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~--~~~kT~~~~~t~nP~W~e~f~~~v~~~----~~~L~~~V~d~   83 (525)
                      .|+|+|++|++|+..+ .|.+||||++++.     .  ++++|+++.+++||+|||+|.|.+...    ...|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999988 5999999999973     2  245899999999999999999998632    24599999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      |..+++++||++.+++..+  +...+.|++|.+
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            9888899999999999999  455678999975

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.72  E-value=1.4e-16  Score=144.61  Aligned_cols=112  Identities=20%  Similarity=0.383  Sum_probs=94.8

Q ss_pred             ceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeecccCCCCCee
Q 009787           13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW   61 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W   61 (525)
                      .|.|.|+|++|++|+.+|                              ..|.+||||.+++++.. .+|+++.++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            589999999999999987                              35678999999998765 59999999999999


Q ss_pred             ccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEE
Q 009787           62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKT  125 (525)
Q Consensus        62 ~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~i~~  125 (525)
                      ||+|.|.+....+.|.|.|||+|..+ +++||.+.++++++  +...+.|++|...       .|++++.+++
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            99999998777778999999999875 57999999999998  5567899999642       2456666554

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.72  E-value=6.8e-17  Score=143.71  Aligned_cols=103  Identities=16%  Similarity=0.287  Sum_probs=89.8

Q ss_pred             ceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEE-EcCC
Q 009787           13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI   85 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~-d~d~   85 (525)
                      .+.|.|+|++|+||++.+ ..|.+||||++++..     .+++|+++++++||+|||+|.|.+......|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            578999999999999874 578899999999842     256899999999999999999999866778999999 6888


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        86 ~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      .+++++||++.|+|+.+  +.....||+|.++
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            88899999999999998  4556789999874

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.71  E-value=9.9e-17  Score=141.72  Aligned_cols=100  Identities=23%  Similarity=0.397  Sum_probs=88.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~   87 (525)
                      +|+|+|++|++|+.++..|.+||||++.+.+.       ..+|+++.+++||.|||+|.|.+......|.|+|||++..+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            48999999999999998899999999998654       46899999999999999999998776778999999999999


Q ss_pred             CCceeEEEEEEcccCC--Cc------ccEEEEccC
Q 009787           88 KSTVLGSVIVTVESEG--QT------GAVWYTLDS  114 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l~--~~------~~~w~~L~~  114 (525)
                      ++++||.+.+++.++.  ..      ...||+|.+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~  115 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP  115 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence            9999999999999982  11      348999985

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.5e-16  Score=136.58  Aligned_cols=96  Identities=22%  Similarity=0.426  Sum_probs=84.2

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      +.|.|+|++|++|+.++   ..||||.+.+++++.+|++.++ .||.|||+|.|.+.+....|.|+|||+|.+ .||+||
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            57999999999997655   4589999999999889999877 499999999999988777899999999865 899999


Q ss_pred             EEEEEcccC--C--CcccEEEEccC
Q 009787           94 SVIVTVESE--G--QTGAVWYTLDS  114 (525)
Q Consensus        94 ~~~i~l~~l--~--~~~~~w~~L~~  114 (525)
                      ++.++|.++  .  ....+||+|.+
T Consensus        77 ~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          77 TVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             EEEEEhHHcccCCCCCCCccEecCh
Confidence            999999998  2  23378999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.71  E-value=2.8e-16  Score=138.64  Aligned_cols=113  Identities=19%  Similarity=0.336  Sum_probs=98.9

Q ss_pred             ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEEEE
Q 009787           13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~----------g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~   81 (525)
                      .|.|+|+|++|++|++.+..          +.+||||++.++++. .+|+++.+++||.|||+|.|.+.+ ...|.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence            47899999999999988863          679999999998765 589999999999999999999974 678999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCC----CcccEEEEccCCCceEEEEEEEEe
Q 009787           82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK  127 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~----~~~~~w~~L~~~~G~i~l~i~~~~  127 (525)
                      |++..+++++||.+.+++.++.    ...+.|++|.+ .|++++.+.+..
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~  130 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG  130 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence            9998889999999999999872    34688999985 799999888764

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.71  E-value=9.4e-17  Score=140.21  Aligned_cols=104  Identities=21%  Similarity=0.365  Sum_probs=89.4

Q ss_pred             CCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V   80 (525)
                      .+..+.|.|+|++|+||++++.. |.+||||.+++.     ...++|+++++++||.|||+|.|.+..   ....|.|+|
T Consensus        11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V   90 (125)
T cd08393          11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV   90 (125)
T ss_pred             ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence            34567899999999999999975 899999999984     234689999999999999999999853   245799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787           81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (525)
                      ||++..+++++||++.++|..+  ......||+|+
T Consensus        91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            9999999999999999999998  44457899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.71  E-value=2.6e-16  Score=139.37  Aligned_cols=114  Identities=19%  Similarity=0.416  Sum_probs=95.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC----------CCcEEEEEEEEc
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW   83 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~----------~~~~L~~~V~d~   83 (525)
                      +.|+|+|++|++|++++..|.+||||++.+++..++|+++++++||.|||.|.|.+..          ....|.|+|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            5789999999999999999999999999999999999999999999999999997432          125699999999


Q ss_pred             CCCCCCceeEEEEE-EcccC-----CCcccEEEEccC---CCceEEEEEEEEe
Q 009787           84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK  127 (525)
Q Consensus        84 d~~~~dd~iG~~~i-~l~~l-----~~~~~~w~~L~~---~~G~i~l~i~~~~  127 (525)
                      |..++|++||++.+ ++..+     .....+|++|..   ..|+|.+.+++..
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~  133 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE  133 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence            99999999999986 43333     245679999975   3477887777664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.70  E-value=1.6e-16  Score=138.74  Aligned_cols=104  Identities=17%  Similarity=0.292  Sum_probs=89.4

Q ss_pred             CCCceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V   80 (525)
                      .+..+.|.|+|++|+||++.+. .|.+||||++++.     ...++|+++++++||.|||+|.|.+..   ....|.|+|
T Consensus        11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V   90 (125)
T cd04029          11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV   90 (125)
T ss_pred             ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            3567889999999999998875 5889999999984     235689999999999999999999854   245799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787           81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (525)
                      ||++..+++++||++.+++..+  ......|++|.
T Consensus        91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             EECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            9999999999999999999998  45567899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.70  E-value=1.6e-16  Score=138.62  Aligned_cols=104  Identities=22%  Similarity=0.414  Sum_probs=91.9

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d~   83 (525)
                      .+..+.|.|+|++|++|++++..|.+||||.+.+.   ...++|+++++++||.|+|+|.|.+...   ...|.|+|||+
T Consensus        12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~   91 (124)
T cd08387          12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF   91 (124)
T ss_pred             CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence            34578999999999999999999999999999983   3457899999999999999999997642   45799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (525)
                      +.++++++||++.++++++  +...+.|++|+
T Consensus        92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            9999999999999999999  55678899986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.70  E-value=4.4e-16  Score=136.21  Aligned_cols=113  Identities=25%  Similarity=0.472  Sum_probs=97.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS   89 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~d   89 (525)
                      +.|+|+|++|++|+..+..+.+||||.+.+..   ..++|+++.+++||.|||+|.|.+... ...|.|+|||++..+++
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH   80 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            36899999999999999999999999999764   356899999999999999999998764 56799999999998899


Q ss_pred             ceeEEEEEEcccC--C---CcccEEEEccCCCceEEEEEEEEe
Q 009787           90 TVLGSVIVTVESE--G---QTGAVWYTLDSPSGQVCLHIKTIK  127 (525)
Q Consensus        90 d~iG~~~i~l~~l--~---~~~~~w~~L~~~~G~i~l~i~~~~  127 (525)
                      ++||++.+++.++  .   ...+.|++|.+ +|++.+.+.+..
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~~  122 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSMEG  122 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEee
Confidence            9999999999875  2   24568999986 788888877663

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.70  E-value=1.8e-16  Score=134.07  Aligned_cols=98  Identities=26%  Similarity=0.330  Sum_probs=87.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeE
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      .|.|+|++|++|+..+..+.+||||.++++++.++|+++.++.||.|||.|.|.+..+ ...|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            4889999999999999889999999999999999999999999999999999999763 5679999999886   78999


Q ss_pred             EEEEEcccC--C--CcccEEEEccCC
Q 009787           94 SVIVTVESE--G--QTGAVWYTLDSP  115 (525)
Q Consensus        94 ~~~i~l~~l--~--~~~~~w~~L~~~  115 (525)
                      ++.+++.++  .  ...+.||+|.++
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCCC
Confidence            999999988  2  246789999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.69  E-value=2.6e-16  Score=137.31  Aligned_cols=103  Identities=23%  Similarity=0.412  Sum_probs=90.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d   84 (525)
                      ...+.|.|+|++|++|++++..+.+||||++.+.   ...++|++++++.||.|||+|.|.+..   ....|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            4567899999999999999989999999999974   245689999999999999999999754   2457999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (525)
                      .++++++||++.+++.++  +...++|++|.
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            999999999999999998  56678999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.69  E-value=7.6e-16  Score=134.66  Aligned_cols=110  Identities=22%  Similarity=0.343  Sum_probs=91.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCC-cEEEEEEEEcCCCCCCce
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWDIIWKSTV   91 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~-~~L~~~V~d~d~~~~dd~   91 (525)
                      ..|+|+|++|++|++.   +.+||||.+.+++.. .+|++ .+++||.|||+|.|.+.++. ..|.|.|||++..++|++
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            4699999999999875   478999999998754 57887 46899999999999865433 579999999999999999


Q ss_pred             eEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEEe
Q 009787           92 LGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK  127 (525)
Q Consensus        92 iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~i~~~~  127 (525)
                      ||.+.+++..+  +...+.|++|.+.       .|+|++.+++..
T Consensus        80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            99999999988  4556789999763       278888887763

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.69  E-value=2.1e-16  Score=138.34  Aligned_cols=104  Identities=18%  Similarity=0.374  Sum_probs=89.1

Q ss_pred             CCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI   80 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V   80 (525)
                      ....+.|.|+|++|+||++++.. |.+||||++++.     ..++||+++++++||+|||+|.|.+...   ...|.+.|
T Consensus        11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V   90 (128)
T cd08392          11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV   90 (128)
T ss_pred             eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence            35568999999999999999875 999999999974     2366899999999999999999998542   46799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCC-----CcccEEEEcc
Q 009787           81 YDWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD  113 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~-----~~~~~w~~L~  113 (525)
                      ||.+.++++++||++.|++.++.     .....||+|.
T Consensus        91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            99999999999999999999882     2456899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.69  E-value=2.6e-16  Score=137.40  Aligned_cols=104  Identities=21%  Similarity=0.372  Sum_probs=89.8

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTI   80 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V   80 (525)
                      .+..+.|.|+|++|++|+.++..+.+||||.+.+..     ..++|++++++.||.|||+|.|.+..    ....|.|+|
T Consensus        12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V   91 (125)
T cd04031          12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV   91 (125)
T ss_pred             eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence            455788999999999999999889999999999854     45689999999999999999998533    256799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 009787           81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~  113 (525)
                      ||++..+.+++||++.+++.+. ......||+|+
T Consensus        92 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~  125 (125)
T cd04031          92 WDYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ  125 (125)
T ss_pred             EeCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence            9999998999999999999985 44457899984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.69  E-value=2.7e-16  Score=133.40  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=80.3

Q ss_pred             eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC--CCcEEEEEEEEcCCCC
Q 009787           14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW   87 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~----g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~--~~~~L~~~V~d~d~~~   87 (525)
                      |+|.|+|++|++|++.+..    +.+||||++.++...++|+++++++||+|||.|.|.+.+  ....|.|+|||++..+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            7899999999999988742    358999999999888999999999999999999999754  2446999999999999


Q ss_pred             CCceeEEEEEEcccC
Q 009787           88 KSTVLGSVIVTVESE  102 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l  102 (525)
                      +|++||++.++|.++
T Consensus        81 ~dd~IG~~~l~L~~l   95 (108)
T cd04039          81 FNDYVATGSLSVQEL   95 (108)
T ss_pred             CCcceEEEEEEHHHH
Confidence            999999999999988

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.69  E-value=2.7e-16  Score=140.67  Aligned_cols=99  Identities=21%  Similarity=0.384  Sum_probs=85.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEec---------------C-CC
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------E-LP   73 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~---------------~-~~   73 (525)
                      .|.|+|++|++|+.  ..|.+||||.+.+..     ..++|+++.+++||+|||+|.|.+.               + ..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            38899999999998  578999999999865     5668999999999999999999984               1 12


Q ss_pred             cEEEEEEEEcCCCCCCceeEEEEEEcccCC---CcccEEEEccCC
Q 009787           74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (525)
Q Consensus        74 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~---~~~~~w~~L~~~  115 (525)
                      ..|.|.|||++..++|+|||++.|++..+.   .....||+|.++
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            459999999999889999999999999993   346889999874

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.68  E-value=1.6e-16  Score=135.77  Aligned_cols=99  Identities=18%  Similarity=0.294  Sum_probs=86.2

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEEEEcCC
Q 009787           14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI   85 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V~d~d~   85 (525)
                      |+|+|+|++|++|+..+.. +.+||||++.+.   ...++|+++++++||.|||+|.|.+..    ....|.|+|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999987 899999999984   345799999999999999999998754    24679999999999


Q ss_pred             CCCCceeEEEEEEcccCCCcccEEEEcc
Q 009787           86 IWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (525)
Q Consensus        86 ~~~dd~iG~~~i~l~~l~~~~~~w~~L~  113 (525)
                      .++|++||++.+++.++. ....|+++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELI-EDRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence            999999999999999995 235587775

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.68  E-value=2.3e-16  Score=134.56  Aligned_cols=99  Identities=21%  Similarity=0.387  Sum_probs=87.9

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCee-ccEEEEEecCC---CcEEEEEEEEcCCCCCCc
Q 009787           16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST   90 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W-~e~f~~~v~~~---~~~L~~~V~d~d~~~~dd   90 (525)
                      |.|+|++|++|+.++. .|.+||||++.+++..++|+++.+++||.| ||+|.|.+...   ...|.|+|||++..++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            6799999999999884 788999999999998999999999999999 99999998653   367999999999999999


Q ss_pred             eeEEEEEEcccCCC-----cccEEEEccC
Q 009787           91 VLGSVIVTVESEGQ-----TGAVWYTLDS  114 (525)
Q Consensus        91 ~iG~~~i~l~~l~~-----~~~~w~~L~~  114 (525)
                      +||++.+++.++..     ....||+|..
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999999832     3567999863

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.68  E-value=3.2e-16  Score=136.02  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=89.2

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V   80 (525)
                      .+..+.|.|+|++|+||++++..+.+||||.+++.      ...++|+++++++||+|||+|.|.+..   ....|.|+|
T Consensus        10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V   89 (124)
T cd08680          10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV   89 (124)
T ss_pred             CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence            45678899999999999999888899999999973      236789999999999999999999864   356799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC---CCcccEEEEc
Q 009787           81 YDWDIIWKSTVLGSVIVTVESE---GQTGAVWYTL  112 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l---~~~~~~w~~L  112 (525)
                      ||++..+++++||.+.+++.++   ......||+|
T Consensus        90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            9999999999999999999988   2345679876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.67  E-value=1.1e-15  Score=133.16  Aligned_cols=109  Identities=24%  Similarity=0.356  Sum_probs=91.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC--Ccee
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STVL   92 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~--dd~i   92 (525)
                      |+|+|++|++|+.++..+.+||||++.++ ...++|+++.+++||.|||+|.|.+.. ...|.|+|||++..++  |++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999999999999999999996 667899999999999999999999976 7789999999998875  5799


Q ss_pred             EEEEEEcccCC---CcccEEEEccCC----CceEEEEEEE
Q 009787           93 GSVIVTVESEG---QTGAVWYTLDSP----SGQVCLHIKT  125 (525)
Q Consensus        93 G~~~i~l~~l~---~~~~~w~~L~~~----~G~i~l~i~~  125 (525)
                      |++.+++.++.   .....|++|...    .|.+.+.+.+
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~  120 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVV  120 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEE
Confidence            99999999982   224679999542    2444444443

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.67  E-value=1e-15  Score=132.65  Aligned_cols=102  Identities=21%  Similarity=0.302  Sum_probs=91.8

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~i   92 (525)
                      |.|.|+|++|++|+..+..+.+||||.+.+++ ..++|+++.++.||.|||+|.|.+....+.|.|+|||++..++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            68999999999999999899999999999976 45789999999999999999999887778999999999999999999


Q ss_pred             EEEEEEcccC-CCcccEEEEccCC
Q 009787           93 GSVIVTVESE-GQTGAVWYTLDSP  115 (525)
Q Consensus        93 G~~~i~l~~l-~~~~~~w~~L~~~  115 (525)
                      |++.+++.++ ....+.||.|..+
T Consensus        81 G~~~~~l~~l~~~~~~~~~~~~~~  104 (120)
T cd04045          81 GSVEINVSDLIKKNEDGKYVEYDD  104 (120)
T ss_pred             eEEEEeHHHhhCCCCCceEEecCC
Confidence            9999999998 5566788888653

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.67  E-value=8.9e-16  Score=133.78  Aligned_cols=113  Identities=20%  Similarity=0.389  Sum_probs=93.1

Q ss_pred             eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009787           14 YLIKLELLAAKNLIGANL-NGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~~--~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd   90 (525)
                      |.|.|+|++|++|+..+. .+.+||||.+.++.  ...+|+++.++.||.|||.|.|.+......|.|+|||++..++|+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            789999999999997653 56799999999987  678999999999999999999998866788999999999988999


Q ss_pred             eeEEEEEEcccC--CCccc-EEEEccC---CCceEEEEEEEE
Q 009787           91 VLGSVIVTVESE--GQTGA-VWYTLDS---PSGQVCLHIKTI  126 (525)
Q Consensus        91 ~iG~~~i~l~~l--~~~~~-~w~~L~~---~~G~i~l~i~~~  126 (525)
                      +||.+.+++.++  ..... .|..|..   ..|++++.+++.
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~  123 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFF  123 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeC
Confidence            999999999998  22222 3444443   246777776664

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.67  E-value=1e-15  Score=133.63  Aligned_cols=105  Identities=21%  Similarity=0.344  Sum_probs=91.1

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYD   82 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V~d   82 (525)
                      ....+.|.|+|++|++|+..+..+.+||||.+.+   +....+|++++++.||.|||+|.|.+..    ....|.++|||
T Consensus        12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d   91 (125)
T cd08386          12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD   91 (125)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence            4557889999999999999998999999999998   3456799999999999999999997422    23569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      ++..+++++||++.+++.++  +.....|+.|.+
T Consensus        92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            99999999999999999998  566788999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.67  E-value=9.2e-16  Score=134.44  Aligned_cols=105  Identities=17%  Similarity=0.312  Sum_probs=88.4

Q ss_pred             CCCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY   81 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V~   81 (525)
                      ....+.|.|+|++|++|++++.. +.+||||++.+.   .+..+|+++++++||.|||+|.|. +..   ....|.++||
T Consensus        12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~   91 (128)
T cd08388          12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL   91 (128)
T ss_pred             ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence            45578999999999999998875 899999999984   345689999999999999999994 432   2346999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--C--CcccEEEEccC
Q 009787           82 DWDIIWKSTVLGSVIVTVESE--G--QTGAVWYTLDS  114 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~--~~~~~w~~L~~  114 (525)
                      |+|.++++++||++.+++.++  .  .....|.+|++
T Consensus        92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             EcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            999999999999999999998  2  44567888864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.66  E-value=4.5e-16  Score=134.53  Aligned_cols=100  Identities=30%  Similarity=0.459  Sum_probs=85.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC--CCcEEEEEEEEcC
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD   84 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~--~~~~L~~~V~d~d   84 (525)
                      ..+.|.|+|++|+||++++ .|.+||||.+++..     .+++|+++.+++||.|||+|.|.+..  ....|.|+|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4678999999999999998 88999999999852     35689999999999999999999754  3456899999999


Q ss_pred             CCC-CCceeEEEEEEcccC--CCcccEEEEc
Q 009787           85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL  112 (525)
Q Consensus        85 ~~~-~dd~iG~~~i~l~~l--~~~~~~w~~L  112 (525)
                      ... .+++||.+.+++.++  +.....||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            876 478999999999998  4445789976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.66  E-value=1e-15  Score=133.52  Aligned_cols=102  Identities=26%  Similarity=0.455  Sum_probs=92.2

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCeeccEEEEEecCC----CcEEEEEEEEcCCCCC
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK   88 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~W~e~f~~~v~~~----~~~L~~~V~d~d~~~~   88 (525)
                      |.|.|+|++|++|+..+..+.+||||++.++...++|++..+ +.||.|||+|.|.+..+    ...|.|+|||++..++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            689999999999999998899999999999988889988874 89999999999998775    4679999999999889


Q ss_pred             CceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           89 STVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        89 dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      +++||.+.+++.++  ....+.|+.|.+.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999998  5566889999874

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.66  E-value=1e-15  Score=136.55  Aligned_cols=88  Identities=25%  Similarity=0.468  Sum_probs=84.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      |.|.|+|++|++|+..+. +.+||||++.++++..+|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999999887 8999999999999999999999999999999999999888888999999999999999999


Q ss_pred             EEEEEcccC
Q 009787           94 SVIVTVESE  102 (525)
Q Consensus        94 ~~~i~l~~l  102 (525)
                      .+.+++.++
T Consensus        81 ~a~i~l~~l   89 (145)
T cd04038          81 EAEIDLEPL   89 (145)
T ss_pred             EEEEEHHHh
Confidence            999999998

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.66  E-value=1.2e-15  Score=133.64  Aligned_cols=104  Identities=19%  Similarity=0.320  Sum_probs=90.4

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~   81 (525)
                      .+..+.|.|+|++|+||+..+..+.+||||++.+.     ...++|++++++.||.|||+|.|.+...   ...|.+.||
T Consensus        12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~   91 (127)
T cd04030          12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK   91 (127)
T ss_pred             eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence            45678999999999999999988999999999985     3567999999999999999999998542   467999999


Q ss_pred             EcCCC--CCCceeEEEEEEcccC--CCcccEEEEcc
Q 009787           82 DWDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (525)
Q Consensus        82 d~d~~--~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (525)
                      |++..  +++++||++.+++.++  +.....||+|.
T Consensus        92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            99875  6899999999999998  45567899884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.65  E-value=1.3e-15  Score=132.69  Aligned_cols=102  Identities=20%  Similarity=0.372  Sum_probs=89.0

Q ss_pred             CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~   81 (525)
                      ...+.|.|+|++|+||+..+ ..+.+||||.+.+..     ..++|++++++.||.|||+|.|.+...   ...|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            45688999999999999998 788999999998731     356899999999999999999997652   457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 009787           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L  112 (525)
                      |++..+++++||++.++++++  +...+.||+|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999999999999999999998  5556889987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.65  E-value=1.2e-15  Score=137.05  Aligned_cols=101  Identities=26%  Similarity=0.571  Sum_probs=89.2

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------EEEeecccCCCC
Q 009787            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----------------------------KRFSSMVPGSRY   58 (525)
Q Consensus         8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-----------------------------~~kT~~~~~t~n   58 (525)
                      .++++.+.|.|+|++|++|.++|..|.+||||.+.+...                             .++|+++.+++|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            567889999999999999999999999999999998531                             257999999999


Q ss_pred             CeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC-CCcccEEEEc
Q 009787           59 PMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTL  112 (525)
Q Consensus        59 P~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L  112 (525)
                      |.|||+|.|.+... ...|.|+|||++    +++||++.++++++ +...+.||+|
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            99999999998763 567999999997    88999999999998 4567899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.65  E-value=3.3e-16  Score=138.43  Aligned_cols=108  Identities=18%  Similarity=0.303  Sum_probs=93.3

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~   81 (525)
                      ....+.|.|+|++|++|++++..|.+||||.+.+..     ...+|+++.+++||.|||+|.|.+...   ...|.|+||
T Consensus         9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~   88 (133)
T cd08384           9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW   88 (133)
T ss_pred             cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence            345789999999999999999899999999999842     346899999999999999999997642   457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (525)
                      |++..+++++||++.+++...+....+|+++...++
T Consensus        89 d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~  124 (133)
T cd08384          89 DKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPD  124 (133)
T ss_pred             eCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCC
Confidence            999988999999999999987777788998865444

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.64  E-value=2.2e-15  Score=131.19  Aligned_cols=105  Identities=20%  Similarity=0.321  Sum_probs=90.4

Q ss_pred             CCCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d   82 (525)
                      ....+.|.|+|++|++|+.++ ..+.+||||.+++.   ....+|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d   89 (123)
T cd08390          10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD   89 (123)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence            345678999999999999998 68899999999973   3456899999999999999999998642   3579999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      ++..+++++||++.+++.++  ......|++|.+
T Consensus        90 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          90 VDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            99988899999999999998  455578999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.64  E-value=1.1e-15  Score=133.59  Aligned_cols=110  Identities=23%  Similarity=0.415  Sum_probs=94.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeeccc-CCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCCC
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW   87 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~-~t~nP~W~e~f~~~v~~~-----~~~L~~~V~d~d~~~   87 (525)
                      .|+|+|++|++|+..+..+.+||||.+++++ ..++|++.. ++.||.|||.|.|.+.+.     ...|.|+|||++..+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4899999999999999889999999999987 778898875 589999999999998765     577999999999888


Q ss_pred             CCceeEEEEEEcccC--CCc-----ccEEEEccCCCceEEEEEE
Q 009787           88 KSTVLGSVIVTVESE--GQT-----GAVWYTLDSPSGQVCLHIK  124 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l--~~~-----~~~w~~L~~~~G~i~l~i~  124 (525)
                      ++++||.+.+++.++  ...     ...||+|..+.|+..+.|.
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~  124 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN  124 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence            999999999999998  222     3689999876676665553

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.64  E-value=2.2e-15  Score=131.31  Aligned_cols=104  Identities=19%  Similarity=0.345  Sum_probs=89.3

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V~d   82 (525)
                      ....+.|.|+|++|+||++.+..|.+||||.+.+.   .++.+|++.++ .||+|||+|.|. +..   ....|.|+|||
T Consensus        12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~   90 (124)
T cd08389          12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG   90 (124)
T ss_pred             CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence            45677899999999999999988999999998763   34568988877 999999999998 543   35669999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      ++.++++++||++.++++.+  ......|++|++
T Consensus        91 ~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          91 VERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             CCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            99999999999999999998  556778999974

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.64  E-value=5e-16  Score=137.18  Aligned_cols=108  Identities=21%  Similarity=0.266  Sum_probs=91.5

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~   81 (525)
                      .+....|.|+|++|+||++.+..|.+||||.+++..     .+.+|+++++++||+|||+|.|.+..   ....|.|+||
T Consensus        11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~   90 (136)
T cd08406          11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA   90 (136)
T ss_pred             cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence            355678999999999999999899999999999832     14579999999999999999999864   3566999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (525)
                      |+|..+++++||++.+.....+...++|.++....+
T Consensus        91 ~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~  126 (136)
T cd08406          91 ESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLR  126 (136)
T ss_pred             eCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCC
Confidence            999999999999999988777777788888765433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.64  E-value=1.9e-15  Score=137.81  Aligned_cols=104  Identities=21%  Similarity=0.268  Sum_probs=90.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V~   81 (525)
                      .+.|.|.|+|++|+||+..+..+.+||||.+.+.     ...++|+++++++||.|||+|.|.+..    ....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            3689999999999999999989999999999872     356789999999999999999998532    2356999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      |++.++++++||++.+++..+  ....+.|+.|.+
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            999998999999999999988  445678998864

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.63  E-value=2.9e-15  Score=130.36  Aligned_cols=93  Identities=19%  Similarity=0.372  Sum_probs=82.8

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEec--CCCcEEEEEEEEcCCCC
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIW   87 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~--~~~~~L~~~V~d~d~~~   87 (525)
                      ....|.|.|+|++|++|+. +..+.+||||.+.+++..++|+++++++||+|||+|.|...  .....|.|+|||++..+
T Consensus        24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            4557899999999999984 67789999999999988999999999999999999999743  34678999999999999


Q ss_pred             CCceeEEEEEEcccCC
Q 009787           88 KSTVLGSVIVTVESEG  103 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l~  103 (525)
                      +|++||.+.+++....
T Consensus       103 ~dd~IG~~~i~l~~~~  118 (127)
T cd04032         103 DDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCeeEEEEEEecCCc
Confidence            9999999999998663

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.63  E-value=2.5e-15  Score=128.44  Aligned_cols=99  Identities=23%  Similarity=0.490  Sum_probs=86.4

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-----CcEEEEEEEEcCCC
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDII   86 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-----~~~L~~~V~d~d~~   86 (525)
                      .-+.|+|+|++|++|+    .|.+||||.+.+++++++|+++.++.||.|||+|.|.+..+     ...|.|+|||++..
T Consensus         2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            3578999999999998    57899999999999999999999999999999999997542     35699999999999


Q ss_pred             CCCceeEEEEEEcccC--C---CcccEEEEccC
Q 009787           87 WKSTVLGSVIVTVESE--G---QTGAVWYTLDS  114 (525)
Q Consensus        87 ~~dd~iG~~~i~l~~l--~---~~~~~w~~L~~  114 (525)
                      +++++||.+.++++.+  .   .....|++|..
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            8999999999999988  2   23567999863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.63  E-value=1.3e-16  Score=157.73  Aligned_cols=103  Identities=25%  Similarity=0.499  Sum_probs=92.5

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEEecC--CCcEEEEEEEEcC
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD   84 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~v~~--~~~~L~~~V~d~d   84 (525)
                      ....|+|+|.+|+||.++|.+|.+||||.+.+     +..+++|++++.++||+|||+|.|.+.+  .+++|.++|||||
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            35578999999999999999999999999997     2446689999999999999999999865  4678999999999


Q ss_pred             CCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009787           85 IIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~  114 (525)
                      +.+++||+|...+.++++ ..+.+.||.|..
T Consensus       258 rTsRNDFMGslSFgisEl~K~p~~GWyKlLs  288 (683)
T KOG0696|consen  258 RTSRNDFMGSLSFGISELQKAPVDGWYKLLS  288 (683)
T ss_pred             ccccccccceecccHHHHhhcchhhHHHHhh
Confidence            999999999999999999 677789999876

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.63  E-value=3.5e-15  Score=133.74  Aligned_cols=100  Identities=21%  Similarity=0.336  Sum_probs=85.8

Q ss_pred             EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEec--CCCcEEEE
Q 009787           15 LIKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIV   78 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g--------------~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~--~~~~~L~~   78 (525)
                      .|.|+|++|++|+.+|..+              .+||||++.+++...+|+++++++||+|||+|.|.+.  .....|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            3789999999999998543              6899999999999999999999999999999999863  34568999


Q ss_pred             EEEEcCCCCCCceeEEEEEEcccC-CCcc--------cEEEEccC
Q 009787           79 TIYDWDIIWKSTVLGSVIVTVESE-GQTG--------AVWYTLDS  114 (525)
Q Consensus        79 ~V~d~d~~~~dd~iG~~~i~l~~l-~~~~--------~~w~~L~~  114 (525)
                      +|||+|..++|++||.+.+++.++ ....        ..|+.|..
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence            999999999999999999999988 3332        46777754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.62  E-value=1.6e-15  Score=134.53  Aligned_cols=108  Identities=19%  Similarity=0.391  Sum_probs=92.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|++|+..+..|.+||||.+.+..     ...+|+++++++||.|+|+|.|.+..   ....|.|+|||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            45678999999999999999999999999999742     24579999999999999999999853   34569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      ++..+++++||++.+++...+....+|++|...+|+
T Consensus        92 ~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~  127 (136)
T cd08404          92 SDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRR  127 (136)
T ss_pred             CCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCC
Confidence            999999999999999999876667789998765554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.61  E-value=1.7e-14  Score=126.45  Aligned_cols=93  Identities=22%  Similarity=0.362  Sum_probs=83.5

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCceeEEEE
Q 009787           20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI   96 (525)
Q Consensus        20 i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~dd~iG~~~   96 (525)
                      |++|++|+.  ..|.+||||++.+++..++|++++++.||.|||+|.|.+..   ....|.|+|||++..+++++||.+.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            689999988  68899999999999988999999999999999999999864   3677999999999998999999999


Q ss_pred             EEcccC--CCcccEEEEccC
Q 009787           97 VTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        97 i~l~~l--~~~~~~w~~L~~  114 (525)
                      ++++++  +.....|++|..
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~   99 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLD   99 (127)
T ss_pred             EEhhHcccCCceEEEEeCcC
Confidence            999998  455577999964

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.61  E-value=1.1e-15  Score=135.54  Aligned_cols=107  Identities=28%  Similarity=0.430  Sum_probs=91.9

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEE
Q 009787            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI   80 (525)
Q Consensus         9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V   80 (525)
                      .++..+.|.|+|++|++|+.++..|.+||||.+.+.  +   ..++|+++++++||.|||+|.|.+...   ...|.|+|
T Consensus        10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v   89 (136)
T cd08402          10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            456778999999999999999999999999999984  2   345799999999999999999997642   24699999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 009787           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP  115 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~  115 (525)
                      ||++.++++++||.+.+++...+....+|+++...
T Consensus        90 ~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~  124 (136)
T cd08402          90 LDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLAS  124 (136)
T ss_pred             EeCCCCCCCceeEEEEECCccCChHHHHHHHHHhC
Confidence            99999999999999999998877667788887653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.61  E-value=8.1e-15  Score=126.03  Aligned_cols=102  Identities=26%  Similarity=0.483  Sum_probs=90.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      |+|+|++|++|+..+..+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+.. ..+.|.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            579999999999999888999999999965 44689999999999999999999875 4677999999999988999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCCCc
Q 009787           94 SVIVTVESE--GQTGAVWYTLDSPSG  117 (525)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~~G  117 (525)
                      ++.+++.++  +...+.|++|.+++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~g~  106 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQGG  106 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCCCC
Confidence            999999997  556688999987544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.60  E-value=1.8e-15  Score=133.55  Aligned_cols=105  Identities=18%  Similarity=0.215  Sum_probs=88.6

Q ss_pred             CCCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVT   79 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~   79 (525)
                      .+..+.|.|.|++|+||++++.  .+.+||||++++..     .+++|+++++++||+|||.|.|.+...   ...|.|+
T Consensus        11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~   90 (138)
T cd08407          11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE   90 (138)
T ss_pred             eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence            4567889999999999999983  35599999999753     245799999999999999999998652   4569999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009787           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (525)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~  114 (525)
                      |||+|..+++++||++.+++...+....+|.++..
T Consensus        91 V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~  125 (138)
T cd08407          91 VLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLD  125 (138)
T ss_pred             EEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHh
Confidence            99999999999999999999877666777877654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.60  E-value=5.3e-15  Score=131.11  Aligned_cols=99  Identities=20%  Similarity=0.411  Sum_probs=87.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEeecccCCCCCeeccEEEEEecCC----------------CcE
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ   75 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~~~~t~nP~W~e~f~~~v~~~----------------~~~   75 (525)
                      |.|+|++|++|+.+ ..|.+||||.+.++    ...++|+++.++.+|.|+|+|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 78999999999998    6778999999999999999999997553                457


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        76 L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      |.|+|||++..++++|||++.+++.++  ......|++|.++
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999988999999999999997  4456889999874

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.59  E-value=1.8e-14  Score=124.13  Aligned_cols=105  Identities=29%  Similarity=0.437  Sum_probs=85.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCCce
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV   91 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~dd~   91 (525)
                      |.|+|++|++|+..   +.+||||.+.+++.. ++|+++.+ .||.|||+|.|.+..   ....|.+.+||.+....+.+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999976   789999999998754 68999988 999999999999876   34568888999887767778


Q ss_pred             eEEEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 009787           92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK  124 (525)
Q Consensus        92 iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~i~  124 (525)
                      +|.+.+.....+...+.||+|.+.      .|++++.++
T Consensus        78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~  116 (117)
T cd08383          78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR  116 (117)
T ss_pred             EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence            887777666667777899999863      366666654

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.59  E-value=3.3e-15  Score=132.51  Aligned_cols=109  Identities=26%  Similarity=0.413  Sum_probs=92.3

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~   81 (525)
                      .+..+.|.|+|++|++|+..+..|.+||||++.+.  +   ...+|++++++.||.|||+|.|.+..   ....|.|+||
T Consensus        11 ~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~   90 (136)
T cd08405          11 NPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM   90 (136)
T ss_pred             cCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            35578899999999999999989999999999973  2   24589999999999999999999753   2457999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      |++..+++++||++.+++...+.....|+++...+|+
T Consensus        91 d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~  127 (136)
T cd08405          91 DKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQ  127 (136)
T ss_pred             ECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCC
Confidence            9999999999999999999887667788888654443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.59  E-value=4.1e-15  Score=131.54  Aligned_cols=109  Identities=23%  Similarity=0.406  Sum_probs=91.4

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~   81 (525)
                      .+..+.|+|+|++|++|++++..|.+||||.+.+..     ...+|+++.+++||.|+|+|.|.+...   ...|.|+||
T Consensus        10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~   89 (134)
T cd08403          10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVV   89 (134)
T ss_pred             cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            356789999999999999999999999999999742     245888889999999999999997542   245999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      |++..+++++||.+.+++...+.....|+++...+|+
T Consensus        90 d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~  126 (134)
T cd08403          90 DYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRK  126 (134)
T ss_pred             ECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCC
Confidence            9999999999999999988666666789888654443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.58  E-value=1.3e-14  Score=128.23  Aligned_cols=92  Identities=22%  Similarity=0.419  Sum_probs=81.8

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeecccCCCCCeeccEEEEEecC-----CCcEEEEE
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVT   79 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~~~t~nP~W~e~f~~~v~~-----~~~~L~~~   79 (525)
                      ..+.|.|+|++|++|+..+..|.+||||++++.       ...++|+++++++||.|||+|.|.+..     ....|.|+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            457899999999999999988999999999985       345789999999999999999999864     24579999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCC
Q 009787           80 IYDWDIIWKSTVLGSVIVTVESEG  103 (525)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~  103 (525)
                      |||++..+++++||++.++++++.
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCC
Confidence            999999988999999999999883

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.58  E-value=1.6e-14  Score=127.18  Aligned_cols=105  Identities=27%  Similarity=0.493  Sum_probs=91.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC--CcEEEEEEEEcCCC
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDII   86 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~--~~~L~~~V~d~d~~   86 (525)
                      +.|+|+|++|++|+..+..+.+||||.+.+.     ...++|+++.++.+|.|||+|.|.+...  ...|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            8899999999999999888899999999985     3567899999999999999999997653  46799999999988


Q ss_pred             CCCceeEEEEEEcccC-CCcccEEEEccC-CCce
Q 009787           87 WKSTVLGSVIVTVESE-GQTGAVWYTLDS-PSGQ  118 (525)
Q Consensus        87 ~~dd~iG~~~i~l~~l-~~~~~~w~~L~~-~~G~  118 (525)
                      +++++||++.+++.++ ......||+|.. +.|+
T Consensus        93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~  126 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE  126 (131)
T ss_pred             CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence            8999999999999998 446678999976 3353

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.58  E-value=5.6e-15  Score=130.78  Aligned_cols=109  Identities=22%  Similarity=0.440  Sum_probs=90.0

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-C----eEEEeecccCCCCCeeccEEEEEecC--C-CcEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-S----EKRFSSMVPGSRYPMWGEEFNFSVDE--L-PVQIIVTIY   81 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-~----~~~kT~~~~~t~nP~W~e~f~~~v~~--~-~~~L~~~V~   81 (525)
                      .+..+.|.|+|++|++|+..+..|.+||||.+.+. +    ..++|+++++++||.|||+|.|.+..  . ...|.|+||
T Consensus        10 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~   89 (135)
T cd08410          10 LPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVY   89 (135)
T ss_pred             CCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEE
Confidence            35668999999999999999999999999999972 2    34689999999999999999999853  2 336999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCce
Q 009787           82 DWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQ  118 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L~~~~G~  118 (525)
                      |+|..+++++||++.+.....+. ..++|+.|....|+
T Consensus        90 d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~  127 (135)
T cd08410          90 GHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRT  127 (135)
T ss_pred             eCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCC
Confidence            99999999999999887766643 45789888765443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.57  E-value=5.8e-14  Score=125.88  Aligned_cols=112  Identities=14%  Similarity=0.191  Sum_probs=89.4

Q ss_pred             EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEEecCC---------CcEEEEE
Q 009787           16 IKLELLAAKN--LIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVT   79 (525)
Q Consensus        16 L~V~i~~A~~--L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~v~~~---------~~~L~~~   79 (525)
                      ..++|..|++  |++.+..+.+||||.+++     ..+..+|+++++|+||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3455666666  777777888999999986     24577999999999999999999998653         3459999


Q ss_pred             EEEcCCC-CCCceeEEEEEEcccC--CCcccEEEEccC----CCceEEEEEEEEe
Q 009787           80 IYDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTIK  127 (525)
Q Consensus        80 V~d~d~~-~~dd~iG~~~i~l~~l--~~~~~~w~~L~~----~~G~i~l~i~~~~  127 (525)
                      |||++.+ .+|++||++.++|+.+  ......|++|..    .+|++.+.+++..
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE  138 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence            9999986 4799999999999999  445667999863    3477777777763

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.56  E-value=6.4e-15  Score=130.66  Aligned_cols=109  Identities=19%  Similarity=0.341  Sum_probs=91.9

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEE
Q 009787            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT   79 (525)
Q Consensus         9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~   79 (525)
                      .+...+.|.|+|++|+||++++..|.+||||++.+..      .+++|+++++++||+|||+|.|.+..   ....|.|+
T Consensus        10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~   89 (138)
T cd08408          10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS   89 (138)
T ss_pred             EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence            3466789999999999999999899999999999732      24589999999999999999999864   34579999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCc
Q 009787           80 IYDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSG  117 (525)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L~~~~G  117 (525)
                      |||.+..+++++||++.+++...+. ...+|+.+...++
T Consensus        90 V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~  128 (138)
T cd08408          90 VYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKG  128 (138)
T ss_pred             EEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCC
Confidence            9999999999999999999887753 4578988865433

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.55  E-value=3.8e-14  Score=123.58  Aligned_cols=89  Identities=24%  Similarity=0.492  Sum_probs=79.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCce
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~--~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~   91 (525)
                      +|+|+|++|++|+.++..|.+||||++.+++..  .+|+++++++||.|||+|.|.+.. ....|.|+|||++..++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            478999999999999999999999999998765  468888899999999999999754 35679999999999999999


Q ss_pred             eEEEEEEcccCC
Q 009787           92 LGSVIVTVESEG  103 (525)
Q Consensus        92 iG~~~i~l~~l~  103 (525)
                      ||++.+++++..
T Consensus        81 iG~~~i~l~~~~   92 (124)
T cd04037          81 IGETVIDLEDRF   92 (124)
T ss_pred             eEEEEEeecccc
Confidence            999999999773

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.55  E-value=9.3e-14  Score=122.64  Aligned_cols=99  Identities=23%  Similarity=0.272  Sum_probs=82.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEEEeecccCCCCCee-ccEEEEEecCCCcEEEEEE
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-------------EKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI   80 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-------------~~~kT~~~~~t~nP~W-~e~f~~~v~~~~~~L~~~V   80 (525)
                      +..|++++|++|+ ++..|.+||||.+.+..             +.++|+++.+++||+| ||+|.|.+.. ...|.++|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4679999999998 77889999999999842             3579999999999999 9999999864 56899999


Q ss_pred             EEcCCCCC---CceeEEEEEEcccCC-----CcccEEEEccCC
Q 009787           81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP  115 (525)
Q Consensus        81 ~d~d~~~~---dd~iG~~~i~l~~l~-----~~~~~w~~L~~~  115 (525)
                      ||++..+.   +++||++.+++.++.     .....|++|...
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~  122 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR  122 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence            99875443   799999999999982     225579998753

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.55  E-value=1.4e-14  Score=126.19  Aligned_cols=106  Identities=21%  Similarity=0.310  Sum_probs=87.4

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCC-CCeeccEEEEEecCC--CcEEEEEE
Q 009787            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDEL--PVQIIVTI   80 (525)
Q Consensus         9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~-nP~W~e~f~~~v~~~--~~~L~~~V   80 (525)
                      ..++.+.|+|+|++|+||+++...+.+||||++++.     -.+++|+++++++ +|.|||+|.|++...  ...|.++|
T Consensus         9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v   88 (135)
T cd08692           9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL   88 (135)
T ss_pred             ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence            357789999999999999998666778999999973     1356899999996 699999999998643  34588999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009787           81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~  114 (525)
                      ||++..+++++||++.+..+.. +...++|.+...
T Consensus        89 ~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~  123 (135)
T cd08692          89 YSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIA  123 (135)
T ss_pred             EeCCCCcCCceEEEEEECCccCCchhhhhHHHHHh
Confidence            9999999999999999999875 445678877644

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.55  E-value=2.4e-14  Score=124.15  Aligned_cols=96  Identities=16%  Similarity=0.245  Sum_probs=82.4

Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEECCeE-------EEeecccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCC----C
Q 009787           19 ELLAAKNLIGANLNGTSDPYAIITCGSEK-------RFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----I   86 (525)
Q Consensus        19 ~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-------~kT~~~~~t~nP~W~e~f~~~v~-~~~~~L~~~V~d~d~----~   86 (525)
                      -.++|++|+..+..|.+||||++++....       ++|+++++++||.|+|+|.|.+. +....|.|+|||+|.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            34889999999999999999999986543       68999999999999999999853 346679999999997    7


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        87 ~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      +++++||++.+++.++  ......|++|.+
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            8999999999999998  455667888843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.55  E-value=9.4e-14  Score=121.24  Aligned_cols=98  Identities=16%  Similarity=0.278  Sum_probs=83.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      .|.|+|++|+ |...+..+.+||||.+.+++. .++|+++.++++|.|||+|.|.+.+ ...|.|+|||++..+.+++||
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEE
Confidence            6899999998 555555889999999999877 7899999999999999999999865 678999999999999999999


Q ss_pred             EEEEEcccCC-----Cc--ccEEEEccC
Q 009787           94 SVIVTVESEG-----QT--GAVWYTLDS  114 (525)
Q Consensus        94 ~~~i~l~~l~-----~~--~~~w~~L~~  114 (525)
                      ++.+++.++.     ..  ...|++|..
T Consensus        81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~  108 (125)
T cd04021          81 EASLDLSDILKNHNGKLENVKLTLNLSS  108 (125)
T ss_pred             EEEEEHHHhHhhcCCCccceEEEEEEEc
Confidence            9999999871     11  234888853

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.55  E-value=1e-14  Score=128.86  Aligned_cols=108  Identities=26%  Similarity=0.440  Sum_probs=93.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|++|+..+..+.+||||.+.+...     .++|+++.++.||.|||+|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            446789999999999999998899999999998532     45899999999999999999998653   4679999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      ++..+++++||.+.+++++.+...++|++|...+|+
T Consensus        91 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~  126 (134)
T cd00276          91 KDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK  126 (134)
T ss_pred             cCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence            998889999999999999976677889999765443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.54  E-value=1.3e-13  Score=122.33  Aligned_cols=97  Identities=24%  Similarity=0.284  Sum_probs=83.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE-EeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC----
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW----   87 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~-kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~----   87 (525)
                      -..|.|.|++|++|++++     +|||.+.+++... ||+++.++.||.|+|+|.|........|.|.||+.+...    
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            456899999999998865     7999999999885 999999999999999999987666788999999765322    


Q ss_pred             CCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           88 KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      ++++||.+.|++..+  +...+.||+|.+
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~  113 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFVEKWYPVST  113 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence            578999999999999  566789999976

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.53  E-value=7.1e-14  Score=118.57  Aligned_cols=81  Identities=15%  Similarity=0.339  Sum_probs=70.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEc-------
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW-------   83 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~-------   83 (525)
                      |.|+|++|+||+     +.+||||.+.++.     ...+|+++.+++||+|||+|.|.+.. ...|.+.|||+       
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~   74 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL   74 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence            679999999995     5699999998853     35799999999999999999999975 77899999998       


Q ss_pred             CCCCCCceeEEEEEEcccC
Q 009787           84 DIIWKSTVLGSVIVTVESE  102 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l  102 (525)
                      |..++|+++|.+.+.++.-
T Consensus        75 d~~~~d~~~G~g~i~Ld~~   93 (118)
T cd08686          75 DGEGTDAIMGKGQIQLDPQ   93 (118)
T ss_pred             cccCcccEEEEEEEEECHH
Confidence            5667899999999988754

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.52  E-value=1.4e-13  Score=117.57  Aligned_cols=96  Identities=20%  Similarity=0.330  Sum_probs=81.6

Q ss_pred             CCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCceeEEEEEEcccC---CCc
Q 009787           31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT  105 (525)
Q Consensus        31 ~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l---~~~  105 (525)
                      .+|.+||||.+.++++ .++|+++.++.||.|||.|.|.+.+. ...|.|.|||++.. ++++||.+.++|.++   ...
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence            4788999999999875 46899999999999999999998764 46699999999988 899999999999987   233


Q ss_pred             ccEEEEccC-CCceEEEEEEEEe
Q 009787          106 GAVWYTLDS-PSGQVCLHIKTIK  127 (525)
Q Consensus       106 ~~~w~~L~~-~~G~i~l~i~~~~  127 (525)
                      ...||+|.+ +.|++++++.+.+
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEec
Confidence            578999974 4688888877764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=3e-14  Score=146.62  Aligned_cols=120  Identities=29%  Similarity=0.496  Sum_probs=106.6

Q ss_pred             CCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC
Q 009787            7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII   86 (525)
Q Consensus         7 ~~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~   86 (525)
                      +++......++++|++|.+|.++|..|++||||...++..+.+|+++...+||+|||.|.|++++...+|++.|||.|..
T Consensus       288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~d  367 (1283)
T KOG1011|consen  288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDND  367 (1283)
T ss_pred             ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCccc
Confidence            34556677899999999999999999999999999999999999999999999999999999999899999999999853


Q ss_pred             -----------CCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEEE
Q 009787           87 -----------WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTI  126 (525)
Q Consensus        87 -----------~~dd~iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~l~i~~~  126 (525)
                                 .+|||+|++.|.+..+....+.||.|..+      .|.|.++|.++
T Consensus       368 lksklrqkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve  424 (1283)
T KOG1011|consen  368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHHHHHHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE
Confidence                       36899999999999998888999999762      37777777765

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.51  E-value=2e-13  Score=118.83  Aligned_cols=102  Identities=19%  Similarity=0.291  Sum_probs=85.5

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTI   80 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V   80 (525)
                      .+..+.|.|+|++|++|++.+..+.+||||++.+.     ....+|+++.++.||.|||+|.|. +..   ....|.|+|
T Consensus        11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v   90 (123)
T cd04035          11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV   90 (123)
T ss_pred             eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence            34568899999999999999988999999999973     235789999999999999999996 332   246799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 009787           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L  112 (525)
                      ||++.. .+++||.+.++++++......|+.+
T Consensus        91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~  121 (123)
T cd04035          91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNI  121 (123)
T ss_pred             EEcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence            999988 8899999999999996555555543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.51  E-value=4.3e-14  Score=125.42  Aligned_cols=105  Identities=18%  Similarity=0.285  Sum_probs=87.7

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~   81 (525)
                      .+..+.|.|+|++|+||++.+ .+.+||||.+.+..     .+++|++++++.||.|||+|.|.+..   ....|.|+||
T Consensus        11 ~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~   89 (137)
T cd08409          11 NPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM   89 (137)
T ss_pred             CCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence            345688999999999999998 88899999999742     35589999999999999999999853   2356999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      |.+..+++++||++.+.....  +...++|.++...
T Consensus        90 ~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~  125 (137)
T cd08409          90 QSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK  125 (137)
T ss_pred             eCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence            999999999999999987544  5556788887653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=99.49  E-value=2.5e-14  Score=153.38  Aligned_cols=480  Identities=22%  Similarity=0.258  Sum_probs=283.4

Q ss_pred             CCCCCCCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEE
Q 009787            2 VQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTI   80 (525)
Q Consensus         2 ~~~~~~~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V   80 (525)
                      +.+++......++......+.+.++..-..++.++||..+.+............+.+|.|++.+.|+-.. +-....+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIp  164 (590)
T KOG1032|consen   85 GGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIP  164 (590)
T ss_pred             CCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEe
Confidence            3456667777788888888888888777777789999999988888888888899999999999998332 234455666


Q ss_pred             EEcCCC-CCCceeEEEEEEccc-CCCcccEEEEccCCCceEE---EEEEEEecccCCccccccccccccccccccccCCC
Q 009787           81 YDWDII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP  155 (525)
Q Consensus        81 ~d~d~~-~~dd~iG~~~i~l~~-l~~~~~~w~~L~~~~G~i~---l~i~~~~~~~~~~~~i~~~l~~~~~~~l~v~~~~~  155 (525)
                      ++++.. .+..-.|.+...+.. .......|..|..+.+...   +.++-........+....++..+...-- -..+.+
T Consensus       165 f~eI~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~-~~~~~~  243 (590)
T KOG1032|consen  165 FDEITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVN-DDQQGN  243 (590)
T ss_pred             eeeeeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcC-cccccc
Confidence            665532 122223333222221 2455677888887666544   3444444444444555556654432211 011345


Q ss_pred             ceecccCcccceeeecCCcceeEeeeeeeeecccccceeEEEeCCeEEEEecCCCceeEEEEeecccee-cccc-ccccC
Q 009787          156 TVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQH-AFINP  233 (525)
Q Consensus       156 ~~~~~k~~~f~~lF~lp~~E~l~~~~~c~l~~~~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~-~~~~~  233 (525)
                      .+....+.++...|++|.+|.+..+++|.+.+.++++|+++++....+|++.+||..+.+...+++++. +... .....
T Consensus       244 ~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~  323 (590)
T KOG1032|consen  244 VDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGP  323 (590)
T ss_pred             cccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCC
Confidence            566778899999999999999999999999999999999999999999999999999999999999999 3222 22222


Q ss_pred             c--EEEE-EecCCCCCCCCCCCCC--CCceeEEEeeeechHHHHHHHHHHHHhhccCchHHHHhhhhhhhhcCCCCCCCC
Q 009787          234 A--ITII-LRMGAGGHGVPPLGSP--DGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKEKAESALRAHSSSIGGS  308 (525)
Q Consensus       234 ~--i~i~-~~~~~~~~~~~~~~~~--~~~~~~~f~sf~~rd~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~  308 (525)
                      .  +... ..-+.++++..+....  .+...+.|.++...   ++++.+.........+......+..-.+.++.+... 
T Consensus       324 ~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l-  399 (590)
T KOG1032|consen  324 RSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKL-  399 (590)
T ss_pred             CccceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheeccCCccccceeeeeEEEEEEecCCcceee-
Confidence            2  2222 2222234444433333  35666666666432   455444433322211100000000000000000000 


Q ss_pred             cccccccccccCCCCCCCCCccccccceeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcE
Q 009787          309 RRQAKIVEETVTKPEKRQPFIKEEVLVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQV  388 (525)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~  388 (525)
                          .+..... ..+  .+  -...|.++.....++.++. |+-+|+ +..-...-+...+...+.-++|+ .+..++..
T Consensus       400 ----~v~~~V~-~~~--~s--w~~~~~~~~~~~~k~lv~~-~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-v~~~~~~v  467 (590)
T KOG1032|consen  400 ----KVSTSVE-WTK--SS--WDVPVSEIGSNTLKDLVEI-LEKLLE-NGEELAKNQEKEDELTYEGSPWE-VEKPGGTV  467 (590)
T ss_pred             ----cceeEEE-ecc--Cc--hhhccccccccchhhHHHH-HHHHHh-ccHHHHHhhcccccccccCCCcc-ccCCCcee
Confidence                0000000 000  00  0001111111233444443 466666 44444444444455556666899 66668899


Q ss_pred             EEEEEEeecCCCCCCcceeEeEEEEEEecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCC----CceEEEEEEee
Q 009787          389 REVAFRSLCKSPIYPRDTAMTESQHAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAE----NSSTIDIKVVS  464 (525)
Q Consensus       389 R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~----~~~~l~v~~~~  464 (525)
                      |...|..--..++++....++..|..........+.+...+..+++|||++|.++.||. .....    ..+.+.++   
T Consensus       468 ~~~~~~~~~~~~i~~~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~-~~~~~~~~v~~~~~~~~---  543 (590)
T KOG1032|consen  468 RQLSYKEVWNKPISPDKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYR-EALDETSKVKTTLVWVS---  543 (590)
T ss_pred             eeeccccccccccccccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhh-hhhcccchhhhhhHHHH---
Confidence            99888864556788888888888888776655789999999999999999999999997 22221    22223333   


Q ss_pred             eeEEEeecceeeeeeeechHHHHHHHHHHHHHHHHHHHhhcC
Q 009787          465 AGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETARSYIKICT  506 (525)
Q Consensus       465 ~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (525)
                      ..|.|.+    +..++.+.........+.+++++...++...
T Consensus       544 ~~~~~l~----~~~~~~~~~k~~~r~~~~~l~~~~~~l~~~~  581 (590)
T KOG1032|consen  544 FRIEWLK----DIKMEARKIKQILRNDQDLLEVLFSLLEKLS  581 (590)
T ss_pred             HHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333    3344444444444555555555555444433

>PLN03008 Phospholipase D delta

Probab=99.49  E-value=2.3e-13  Score=147.63  Aligned_cols=118  Identities=19%  Similarity=0.346  Sum_probs=97.6

Q ss_pred             ceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCeE-EE
Q 009787           13 AYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSEK-RF   49 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~------------------------------------------~g~~DPyv~v~~~~~~-~k   49 (525)
                      .|.|.++|.+|++|+.+|.                                          .+++||||++.+++.+ .+
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            5789999999999985331                                          2467999999998764 58


Q ss_pred             eecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEE
Q 009787           50 SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVC  120 (525)
Q Consensus        50 T~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~  120 (525)
                      |+++.+++||+|||+|.|.+..+...|.|+|||+|.++ +++||++.|++.++  +...+.|++|...       .++++
T Consensus        93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~  171 (868)
T PLN03008         93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIF  171 (868)
T ss_pred             EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEEE
Confidence            99999999999999999999887889999999999996 58999999999999  5667899999651       25677


Q ss_pred             EEEEEEecccC
Q 009787          121 LHIKTIKLPVN  131 (525)
Q Consensus       121 l~i~~~~~~~~  131 (525)
                      +++++......
T Consensus       172 v~lqf~pv~~~  182 (868)
T PLN03008        172 IDMKFTPFDQI  182 (868)
T ss_pred             EEEEEEEcccc
Confidence            77777765433

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.48  E-value=1.9e-13  Score=116.48  Aligned_cols=94  Identities=21%  Similarity=0.368  Sum_probs=78.6

Q ss_pred             EEEEEeecCCCCCCCCCCCcEEEEEECCe------EEEeecccCCCCCeeccEEEEEecC-----CCcEEEEEEEEcCCC
Q 009787           18 LELLAAKNLIGANLNGTSDPYAIITCGSE------KRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDII   86 (525)
Q Consensus        18 V~i~~A~~L~~~d~~g~~DPyv~v~~~~~------~~kT~~~~~t~nP~W~e~f~~~v~~-----~~~~L~~~V~d~d~~   86 (525)
                      +-.++|++|+.++..|.+||||++++...      .++|+++++++||.|| +|.|.+..     ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            44569999999999999999999997543      4689999999999999 78887532     256899999999999


Q ss_pred             CCCceeEEEEEEcccCCCcccEEEEc
Q 009787           87 WKSTVLGSVIVTVESEGQTGAVWYTL  112 (525)
Q Consensus        87 ~~dd~iG~~~i~l~~l~~~~~~w~~L  112 (525)
                      ++|++||++.++++++......++.+
T Consensus        83 ~~d~~iG~~~~~l~~l~~~~~~~~~~  108 (110)
T cd04047          83 GKHDLIGEFETTLDELLKSSPLEFEL  108 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCceEEe
Confidence            99999999999999996555555554

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.48  E-value=1.1e-12  Score=114.93  Aligned_cols=102  Identities=23%  Similarity=0.369  Sum_probs=85.1

Q ss_pred             eEEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEEEeecccCCC-CCeeccEEEEEecCCC-cEEEEEEEEc
Q 009787           14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDELP-VQIIVTIYDW   83 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d--~~g~~DPyv~v~~------~~~~~kT~~~~~t~-nP~W~e~f~~~v~~~~-~~L~~~V~d~   83 (525)
                      ..|+|+|++|++|+..+  ..+.+||||.+++      .....+|+++.++. ||.|+|+|.|.+..+. ..|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            47999999999999888  5789999999998      34557899887765 9999999999976543 4699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (525)
                      +.. ++++||.+.++++++.. ...|++|..+.|
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~-g~~~~~l~~~~~  113 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQ-GYRHVPLLDSKG  113 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcC-ceEEEEecCCCC
Confidence            988 89999999999999943 356889865443

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=8.6e-13  Score=137.70  Aligned_cols=159  Identities=19%  Similarity=0.245  Sum_probs=117.3

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEc
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~   83 (525)
                      ......|.|+|++|++|+.++..|.+||||.+++..   .+.+|++.++++||.|||+|.|.+..   ..+.|.+.|||.
T Consensus       163 d~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~  242 (421)
T KOG1028|consen  163 DFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDF  242 (421)
T ss_pred             cccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEec
Confidence            344568999999999999999778899999999853   45689999999999999999999643   367799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEEecccCCccccccccccccccccccccCC
Q 009787           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQG  154 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~i~~~~~~~~~~~~i~~~l~~~~~~~l~v~~~~  154 (525)
                      |+++++++||++.+++..+  ......|.+|.+.       .|++.+.+.+......        +...   -++.+.+.
T Consensus       243 drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~--------ltv~---v~kar~L~  311 (421)
T KOG1028|consen  243 DRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGR--------LTVV---VIKARNLK  311 (421)
T ss_pred             CCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCe--------EEEE---EEEecCCC
Confidence            9999999999999998887  3335789999762       2577777777654111        0000   11233344


Q ss_pred             CceecccCcccceeeecCCcceeEe
Q 009787          155 PTVVHQKPGPLQTIFNLLPDEFVEL  179 (525)
Q Consensus       155 ~~~~~~k~~~f~~lF~lp~~E~l~~  179 (525)
                      ..+..+.+++|-+..-++.+.++..
T Consensus       312 ~~~~~~~~d~~Vk~~l~~~~~~~~k  336 (421)
T KOG1028|consen  312 SMDVGGLSDPYVKVTLLDGDKRLSK  336 (421)
T ss_pred             cccCCCCCCccEEEEEecCCceeee
Confidence            4455556667777776666644443

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.46  E-value=9.7e-14  Score=107.80  Aligned_cols=61  Identities=31%  Similarity=0.658  Sum_probs=44.7

Q ss_pred             ccceeeecCCcceeEeeeeeeeec-ccccceeEEEeCCeEEEEecCCCcee-EEEEeecccee
Q 009787          164 PLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDE  224 (525)
Q Consensus       164 ~f~~lF~lp~~E~l~~~~~c~l~~-~~~~~Grlyis~~~~~F~s~~~g~~~-~~~i~~~~i~~  224 (525)
                      .|+++|+||.+|.|+.+|.|++.. .++.+|+||||.+++||+|+.++..+ ++.|||.||..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~   64 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKS   64 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeE
Confidence            689999999999999999999999 89999999999999999999999888 99999999988

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.45  E-value=2.2e-13  Score=160.57  Aligned_cols=113  Identities=20%  Similarity=0.323  Sum_probs=98.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCCC--cEEEEEEEEcCCCC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELP--VQIIVTIYDWDIIW   87 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~~--~~L~~~V~d~d~~~   87 (525)
                      +-.|.|.|+|++|+||.  +..|.+||||++.++++ +.||++++++.||+|||+|.|.+.+++  ..|+|+|||+|.++
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence            44799999999999998  44799999999999965 778999999999999999998887755  67999999999985


Q ss_pred             CCceeEEEEEEcccC--CCcccEEEEccC---CCce---EEEEEEEE
Q 009787           88 KSTVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI  126 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l--~~~~~~w~~L~~---~~G~---i~l~i~~~  126 (525)
                      +| .||.+.+++.++  +.....||+|.+   +.|+   +.++++|.
T Consensus      2055 kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2055 KS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             CC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence            55 899999999998  566778999985   6788   88888775

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.34  E-value=2.6e-12  Score=97.19  Aligned_cols=55  Identities=35%  Similarity=0.680  Sum_probs=52.6

Q ss_pred             ecCCcceeEeeeeeeeecccccceeEEEeCCeEEEEecCCCcee-EEEEeecccee
Q 009787          170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDE  224 (525)
Q Consensus       170 ~lp~~E~l~~~~~c~l~~~~~~~Grlyis~~~~~F~s~~~g~~~-~~~i~~~~i~~  224 (525)
                      +||++|.|+.+|.|+|.+.++++||||||++++||+|+.+|+.+ +++||+.+|..
T Consensus         1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~   56 (61)
T smart00568        1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITR   56 (61)
T ss_pred             CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeE
Confidence            37899999999999999999999999999999999999999999 99999999988

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.33  E-value=8.5e-12  Score=100.33  Aligned_cols=81  Identities=26%  Similarity=0.491  Sum_probs=72.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEeecccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCCCCCCce
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWKSTV   91 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~W~e~f~~~v~-~~~~~L~~~V~d~d~~~~dd~   91 (525)
                      |+|+|++|++|+..+..+.+||||.+.+..   ..++|+++.++.+|.|+|+|.|.+. .....|.|+|||++..+++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999988888999999999976   6789999999999999999999964 345559999999999988999


Q ss_pred             eEEEE
Q 009787           92 LGSVI   96 (525)
Q Consensus        92 iG~~~   96 (525)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.30  E-value=5.6e-12  Score=132.10  Aligned_cols=115  Identities=23%  Similarity=0.378  Sum_probs=103.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      .|.|+|.+|+||++.+..|.+||||.+.++++. .||.++.+++.|-|.|+|.|+++..-+.|.|.|||+| +++|+.||
T Consensus         6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IG   84 (800)
T KOG2059|consen    6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIG   84 (800)
T ss_pred             ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccc
Confidence            588999999999999999999999999998765 5999999999999999999999988888999999999 89999999


Q ss_pred             EEEEEcccC--CCcccEEEEccC------CCceEEEEEEEEeccc
Q 009787           94 SVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKLPV  130 (525)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~------~~G~i~l~i~~~~~~~  130 (525)
                      .+.|.-.++  .+..+.|+.|.+      -.|++++++++.....
T Consensus        85 Kvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~  129 (800)
T KOG2059|consen   85 KVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ  129 (800)
T ss_pred             eeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence            999998888  567899999976      3489999988876543

>cd00030 C2 C2 domain

Probab=99.21  E-value=1.4e-10  Score=95.37  Aligned_cols=97  Identities=30%  Similarity=0.574  Sum_probs=84.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCCceeE
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      |.|+|++|++|......+..+|||.+.+.. ...+|.+..++.||.|++.|.|.+.. ....|.|+||+.+..+.+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            578999999998877778899999999987 78899999999999999999999876 6778999999999888889999


Q ss_pred             EEEEEcccCC---CcccEEEEc
Q 009787           94 SVIVTVESEG---QTGAVWYTL  112 (525)
Q Consensus        94 ~~~i~l~~l~---~~~~~w~~L  112 (525)
                      .+.+++..+.   .....|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999874   445667764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.13  E-value=4.5e-10  Score=92.71  Aligned_cols=88  Identities=24%  Similarity=0.516  Sum_probs=78.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCCc
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~---~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~dd   90 (525)
                      .|.|+|++|++|......+..+|||.+.+...   ..+|+++.++.+|.|+++|.|.+... ...|.|+|||.+..+.+.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~   80 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD   80 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence            37899999999998876678999999999764   68999999999999999999998876 788999999999887789


Q ss_pred             eeEEEEEEcccC
Q 009787           91 VLGSVIVTVESE  102 (525)
Q Consensus        91 ~iG~~~i~l~~l  102 (525)
                      ++|.+.+++.++
T Consensus        81 ~~G~~~~~l~~~   92 (101)
T smart00239       81 FIGQVTIPLSDL   92 (101)
T ss_pred             eeEEEEEEHHHc
Confidence            999999998887

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.08  E-value=7e-10  Score=96.82  Aligned_cols=87  Identities=17%  Similarity=0.277  Sum_probs=73.8

Q ss_pred             EEEEEEEeecCCCCC--CCCC--CCcEEEEEECC---eEEEeecccCCCC--CeeccEEEEEecC---------------
Q 009787           16 IKLELLAAKNLIGAN--LNGT--SDPYAIITCGS---EKRFSSMVPGSRY--PMWGEEFNFSVDE---------------   71 (525)
Q Consensus        16 L~V~i~~A~~L~~~d--~~g~--~DPyv~v~~~~---~~~kT~~~~~t~n--P~W~e~f~~~v~~---------------   71 (525)
                      |+|.|.+|++++..+  ..|.  +||||+..+..   ..++|.+..+++|  |.||+.|.|.+..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            799999999966543  4664  99999999864   5578999999999  9999999988543               


Q ss_pred             ---------CCcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009787           72 ---------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (525)
Q Consensus        72 ---------~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l  102 (525)
                               ....|.++|||.|.+++|++||.+++++..+
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l  121 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSIL  121 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhc
Confidence                     1345999999999999999999999999988

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1e-09  Score=114.82  Aligned_cols=104  Identities=25%  Similarity=0.424  Sum_probs=84.7

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEE
Q 009787            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTI   80 (525)
Q Consensus         9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V   80 (525)
                      ..+..|.|+|.|++|++|+.++..+.+||||++.+.  .   .+++|.++++++||+|||+|.|.+...   ...|.|+|
T Consensus       293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V  372 (421)
T KOG1028|consen  293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV  372 (421)
T ss_pred             eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence            346689999999999999999999999999999963  2   345799999999999999999988642   34599999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 009787           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L  112 (525)
                      ||+|.++.+++||.+.+....-+....+|.+.
T Consensus       373 ~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m  404 (421)
T KOG1028|consen  373 WDHDTLGSNDLIGRCILGSDSTGEEVRHWQEM  404 (421)
T ss_pred             EEcccccccceeeEEEecCCCCchHHHHHHHH
Confidence            99999999999999888777533333445443

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.96  E-value=1.7e-10  Score=120.85  Aligned_cols=119  Identities=28%  Similarity=0.502  Sum_probs=96.0

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eE---------------------------EEeecccCC
Q 009787            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EK---------------------------RFSSMVPGS   56 (525)
Q Consensus         8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~----~~---------------------------~kT~~~~~t   56 (525)
                      +..++...+.|-+.+|++|.++|.+|.+|||+.+.+..    ..                           +-|+++++|
T Consensus       108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T  187 (1103)
T KOG1328|consen  108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT  187 (1103)
T ss_pred             CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence            44566778889999999999999999999999987510    00                           027889999


Q ss_pred             CCCeeccEEEEEecCC-CcEEEEEEEEcCCC---------------------------------CC---CceeEEEEEEc
Q 009787           57 RYPMWGEEFNFSVDEL-PVQIIVTIYDWDII---------------------------------WK---STVLGSVIVTV   99 (525)
Q Consensus        57 ~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~---------------------------------~~---dd~iG~~~i~l   99 (525)
                      +||+|+|.|.|.+.+. ...+++.|||+|.-                                 +.   |||+|++.|++
T Consensus       188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl  267 (1103)
T KOG1328|consen  188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL  267 (1103)
T ss_pred             CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence            9999999999999875 45699999999832                                 22   79999999999


Q ss_pred             ccC-CCcccEEEEccCCC------ceEEEEEEEE
Q 009787          100 ESE-GQTGAVWYTLDSPS------GQVCLHIKTI  126 (525)
Q Consensus       100 ~~l-~~~~~~w~~L~~~~------G~i~l~i~~~  126 (525)
                      .++ ..+.+.||.|+++.      |++++.+...
T Consensus       268 ~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLs  301 (1103)
T KOG1328|consen  268 AEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLS  301 (1103)
T ss_pred             hcCCcchHHHHhccCcccccccccceEEEEEEEe
Confidence            999 56678999998843      7777776655

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.95  E-value=2.8e-09  Score=118.08  Aligned_cols=105  Identities=23%  Similarity=0.377  Sum_probs=90.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEec-CCCcEEEEEEEEcCCCCC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWK   88 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~-~~~~~L~~~V~d~d~~~~   88 (525)
                      ...|-|+|.+..|.||+..|.+|.+||||.+.+.++ .++|+++++++||+|||+|.+.+. .....+.+.|+|||...+
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence            457889999999999999999999999999999876 679999999999999999999986 456779999999999999


Q ss_pred             CceeEEEEEEcccCCCcc--cEEEEccCC
Q 009787           89 STVLGSVIVTVESEGQTG--AVWYTLDSP  115 (525)
Q Consensus        89 dd~iG~~~i~l~~l~~~~--~~w~~L~~~  115 (525)
                      +|.||.+.++|..+.+..  ..-.+|.++
T Consensus      1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038        1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred             ccccccccccHhhcCcCCccceeeeccCc
Confidence            999999999999983332  233445543

>PLN02223 phosphoinositide phospholipase C

Probab=98.95  E-value=1.1e-08  Score=107.40  Aligned_cols=105  Identities=18%  Similarity=0.280  Sum_probs=83.2

Q ss_pred             ceEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCCC-cEEEEEEE
Q 009787           13 AYLIKLELLAAKNLIGA-----NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIY   81 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~-----d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~~-~~L~~~V~   81 (525)
                      ...|.|+|+.|.+++..     +.....||||.+.+.     ...++|.+..++.||.|||+|.|.+..+. ..|.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            46799999999987521     224568999999973     34557877788999999999999986544 45899999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      |+|..+.++|+|++.+|+..+..+ -.+++|..+.|+
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~  523 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGK  523 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcC
Confidence            999888899999999999999544 356788776665

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.91  E-value=7.9e-09  Score=114.59  Aligned_cols=121  Identities=17%  Similarity=0.333  Sum_probs=100.2

Q ss_pred             CCCCceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCC
Q 009787            9 QTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI   85 (525)
Q Consensus         9 ~~~~~g~L~V~i~~A~~L~~~d--~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~   85 (525)
                      .+.+-|+|.|+|.+|++|...+  ..+..|||+.+.... ...+|+++++++||+|||+|.+.+......|.++|||.+.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            6778999999999999999988  689999999999643 3458999999999999999999999888999999999998


Q ss_pred             CCCCceeEEEEEEcccC---CCcccEEEEccC---CCceEEEEEEEEecc
Q 009787           86 IWKSTVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKLP  129 (525)
Q Consensus        86 ~~~dd~iG~~~i~l~~l---~~~~~~w~~L~~---~~G~i~l~i~~~~~~  129 (525)
                      ..+|+.+|.+.++|..+   ......-+.+..   ..|++...+++.+..
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~  560 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVI  560 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeeccc
Confidence            99999999999999877   122233444432   347788777777654

>PLN02270 phospholipase D alpha

Probab=98.90  E-value=1.6e-08  Score=110.56  Aligned_cols=115  Identities=18%  Similarity=0.330  Sum_probs=93.8

Q ss_pred             ceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCeEE-EeecccCC-CCCeeccEEEEEecCC
Q 009787           13 AYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSEKR-FSSMVPGS-RYPMWGEEFNFSVDEL   72 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d------------------~~g~~DPyv~v~~~~~~~-kT~~~~~t-~nP~W~e~f~~~v~~~   72 (525)
                      .|.|.|+|.+|++|+.++                  ..+.+|||+.+.+++.+. ||+++.+. .||.|+|.|.+.+...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            588999999999998631                  135689999999987665 99999874 6999999999999988


Q ss_pred             CcEEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-----c--eEEEEEEEEec
Q 009787           73 PVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----G--QVCLHIKTIKL  128 (525)
Q Consensus        73 ~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~-----G--~i~l~i~~~~~  128 (525)
                      ...+.|.|-|.|.++.. +||.+.+|+.++  +...+.|+++....     +  ++++.+++...
T Consensus        87 ~~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~  150 (808)
T PLN02270         87 ASNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV  150 (808)
T ss_pred             cceEEEEEecCCccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence            89999999999988655 999999999998  56678999996522     2  35556555553

>PLN02952 phosphoinositide phospholipase C

Probab=98.87  E-value=2.7e-08  Score=106.69  Aligned_cols=105  Identities=16%  Similarity=0.249  Sum_probs=83.3

Q ss_pred             ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 009787           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~------d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V   80 (525)
                      ...|.|+|+.|.+|+..      +.....||||.+.+-     ..+.+|+++.++.||.|||+|.|.+..+ -..|.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            56899999999987532      112345999999973     4566899999999999999999987653 34589999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      ||+|..+.++|+|++.+|+..+..+. .|++|..+.|.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy-R~VpL~~~~G~  585 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI-RSVPLHDKKGE  585 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc-eeEeCcCCCCC
Confidence            99999889999999999999995443 48999764443

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.77  E-value=3.1e-08  Score=81.45  Aligned_cols=82  Identities=16%  Similarity=0.287  Sum_probs=68.7

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCce
Q 009787           16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (525)
Q Consensus        16 L~V~i~~A~~L~~~d---~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~   91 (525)
                      |.|+|..|+++...+   ..+.+||||++.++.. +.||++   +.||.|||+|.|.+.. ...+.+.|||+... ..-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~nEiel~VyDk~~~-~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-NNEEEVIVYDKGGD-QPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-CcEEEEEEEeCCCC-eecc
Confidence            679999999999888   5788999999999876 678877   5799999999999964 88899999998642 3446


Q ss_pred             eEEEEEEcccC
Q 009787           92 LGSVIVTVESE  102 (525)
Q Consensus        92 iG~~~i~l~~l  102 (525)
                      ||...+.++++
T Consensus        76 i~llW~~~sdi   86 (109)
T cd08689          76 VGLLWLRLSDI   86 (109)
T ss_pred             eeeehhhHHHH
Confidence            88888887766

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.77  E-value=4e-09  Score=110.89  Aligned_cols=92  Identities=25%  Similarity=0.408  Sum_probs=81.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEeecccCCCCCeeccEEEEEecCC-----CcEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIV   78 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~W~e~f~~~v~~~-----~~~L~~   78 (525)
                      ...-.|.|.|+-|+++.+-|.+|.+||||++.+...       .++|+++.+++||+|+|+|+|.|+..     ...|.|
T Consensus       944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen  944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred             ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence            445568899999999999999999999999998753       34899999999999999999998653     233999


Q ss_pred             EEEEcCCCCCCceeEEEEEEcccC
Q 009787           79 TIYDWDIIWKSTVLGSVIVTVESE  102 (525)
Q Consensus        79 ~V~d~d~~~~dd~iG~~~i~l~~l  102 (525)
                      +|+|+|-++.+||-|++.+.|..+
T Consensus      1024 TVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             EeeccceecccccchHHHHhhCCC
Confidence            999999999999999999999988

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.73  E-value=1.1e-07  Score=101.83  Aligned_cols=105  Identities=15%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 009787           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~------d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V   80 (525)
                      ...|.|+|+.|.+++..      +.....||||.+.+-     ....+|++..++.||.|||+|.|.+.-+ -..|+|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            56799999999987521      223457999999973     3446888888899999999999996543 45699999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      +|+|..+.|+|+|+..+|+..+..+- ..++|..+.|.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-R~V~L~~~~G~  584 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGI-HAVPLFNRKGV  584 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCcc-ceEeccCCCcC
Confidence            99998889999999999999995443 36678766654

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.67  E-value=2.8e-07  Score=98.64  Aligned_cols=105  Identities=14%  Similarity=0.221  Sum_probs=81.8

Q ss_pred             ceEEEEEEEEeecCC--CC----CCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEE
Q 009787           13 AYLIKLELLAAKNLI--GA----NLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~--~~----d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V   80 (525)
                      ...|.|+|+.|.+++  ..    +.....||||.+.+.     ..+.+|+++.++.||.|+|+|.|.+.-+ -..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            567999999998853  11    123457999999973     3456899999989999999999987543 35599999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      ||+|..+.++|+|+..+|+..+..+ -..++|..+.|.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~G-yR~V~L~~~~g~  567 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQG-IRAFPLHSRKGE  567 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCc-cceEEccCCCcC
Confidence            9999888899999999999999544 335677665554

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.64  E-value=1.9e-07  Score=100.20  Aligned_cols=103  Identities=20%  Similarity=0.311  Sum_probs=81.1

Q ss_pred             EEEEEEEEeecCCCCCC----CCCCCcEEEEEECC-----eEEEee-cccCCCCCeeccEEEEEecCC-CcEEEEEEEEc
Q 009787           15 LIKLELLAAKNLIGANL----NGTSDPYAIITCGS-----EKRFSS-MVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDW   83 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~----~g~~DPyv~v~~~~-----~~~kT~-~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~   83 (525)
                      +|.|+|+.|.++.+.-.    ...+||||.+++-+     ...+|+ +..++-||.|+|+|+|.+.-+ -..|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            79999999997665432    24589999999743     345788 446678999999999998654 45599999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      |..++|||+|+.++|+..+..+-. -++|....|+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyR-hVpL~~~~G~  730 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYR-HVPLLSREGE  730 (746)
T ss_pred             CCCCcccccceeeccHHHhhCcee-eeeecCCCCc
Confidence            999999999999999999955433 4567665665

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.64  E-value=1.1e-07  Score=97.90  Aligned_cols=116  Identities=17%  Similarity=0.310  Sum_probs=97.3

Q ss_pred             ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCeec-cEEEEEecC---CCcEEEEEEEEcCCCC
Q 009787           13 AYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDE---LPVQIIVTIYDWDIIW   87 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~-e~f~~~v~~---~~~~L~~~V~d~d~~~   87 (525)
                      .|.|-|+|..|++|+.+|. ....|.||.+.+.+..++|.+..+++||.|| +.|.|++.+   .+.+|.+.+.|+|..+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            4788999999999999986 4457999999999999999999999999998 678999865   3556999999999999


Q ss_pred             CCceeEEEEEEcccC----------C--CcccEEEEccC----CCceEEEEEEEEec
Q 009787           88 KSTVLGSVIVTVESE----------G--QTGAVWYTLDS----PSGQVCLHIKTIKL  128 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l----------~--~~~~~w~~L~~----~~G~i~l~i~~~~~  128 (525)
                      .+|-||.+.|.++.+          +  .-...|+++-.    -.|+|.+.+++...
T Consensus        82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdlf  138 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDLF  138 (1169)
T ss_pred             cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEeeh
Confidence            999999999999977          1  11356999854    34888888877643

>PLN02228 Phosphoinositide phospholipase C

Probab=98.63  E-value=4.4e-07  Score=96.93  Aligned_cols=105  Identities=12%  Similarity=0.183  Sum_probs=81.5

Q ss_pred             ceEEEEEEEEeecCCC---CC---CCCCCCcEEEEEEC-----CeEEEeecccCCCCCee-ccEEEEEecCC-CcEEEEE
Q 009787           13 AYLIKLELLAAKNLIG---AN---LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMW-GEEFNFSVDEL-PVQIIVT   79 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~---~d---~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W-~e~f~~~v~~~-~~~L~~~   79 (525)
                      ...|.|+|+.|++|+.   .+   .....||||.+.+.     ...++|+++.++.||.| +|+|.|.+..+ -..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998731   11   23347999999973     34568999988899999 99999997543 3459999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      |+|+|..+.++|+|+..++++.+..+ -..++|..+.|+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~  547 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK  547 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence            99999888999999999999999543 346678665544

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.30  E-value=3.4e-06  Score=90.33  Aligned_cols=89  Identities=16%  Similarity=0.324  Sum_probs=73.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEE-EeecccCCCCCeec-cEEEEEecCCC-cEEEEEEEEcC
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKR-FSSMVPGSRYPMWG-EEFNFSVDELP-VQIIVTIYDWD   84 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~-kT~~~~~t~nP~W~-e~f~~~v~~~~-~~L~~~V~d~d   84 (525)
                      .-.|.|.|+.|+.|+..+ .|..-|||.+.+     +...+ +|.++.+++||+|+ |.|+|.+.++. ..|+|.|+|.|
T Consensus      1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            457889999999998544 455679999986     33444 45566889999999 99999997754 45999999999


Q ss_pred             CCCCCceeEEEEEEcccC
Q 009787           85 IIWKSTVLGSVIVTVESE  102 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l  102 (525)
                      .++...|||++.+|+..+
T Consensus      1143 mfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred             ccCCcceeeeeecchhhh
Confidence            999888999999999988

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.29  E-value=4.4e-07  Score=99.26  Aligned_cols=97  Identities=22%  Similarity=0.431  Sum_probs=83.7

Q ss_pred             CCCCCC-CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE--EeecccCCCCCeeccEEEEEecC-CCcEEEEEE
Q 009787            5 KGDPQT-NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTI   80 (525)
Q Consensus         5 ~~~~~~-~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~--kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V   80 (525)
                      ++-+++ +-..+++|++++|.+|.+.|.+|.+|||+.+.++++..  +...+.+++||+|++.|++...- ....+.++|
T Consensus       603 ~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~v  682 (1105)
T KOG1326|consen  603 LDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEV  682 (1105)
T ss_pred             hcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEE
Confidence            344455 55667889999999999999999999999999998774  67888999999999999998654 356699999


Q ss_pred             EEcCCCCCCceeEEEEEEccc
Q 009787           81 YDWDIIWKSTVLGSVIVTVES  101 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~  101 (525)
                      ||+|..+.|+.||+..+.+..
T Consensus       683 yd~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  683 YDHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             EEeecccccchhhceehhhhh
Confidence            999999999999999998874

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.26  E-value=1.3e-06  Score=92.61  Aligned_cols=93  Identities=25%  Similarity=0.440  Sum_probs=72.4

Q ss_pred             EEeecCCCCCCCCCCCcEEEEEECCeE----EEeecccCCCCCeeccEEEEEecCC----------------CcEEEEEE
Q 009787           21 LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQIIVTI   80 (525)
Q Consensus        21 ~~A~~L~~~d~~g~~DPyv~v~~~~~~----~kT~~~~~t~nP~W~e~f~~~v~~~----------------~~~L~~~V   80 (525)
                      +.++.+.+.. ++.+|||+.+...+..    .+|++++++.+|.|+|.|.|.+...                ...|++.+
T Consensus       138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l  216 (800)
T KOG2059|consen  138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL  216 (800)
T ss_pred             hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence            3444444444 5669999999975443    3899999999999999999987543                34589999


Q ss_pred             EE-cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           81 YD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        81 ~d-~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      |+ ++....++|+|++.+++...  ......||-|++
T Consensus       217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp  253 (800)
T KOG2059|consen  217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP  253 (800)
T ss_pred             ccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence            99 56666699999999999987  455678999987

>PLN02352 phospholipase D epsilon

Probab=98.12  E-value=2.2e-05  Score=86.16  Aligned_cols=110  Identities=12%  Similarity=0.144  Sum_probs=80.9

Q ss_pred             CceEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCeEE-EeecccCCCCCeeccEEEEEecCCC-cEEEEEEEEcC
Q 009787           12 SAYLIKLELLAAKNLIGA----NL-NGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWD   84 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~----d~-~g~~DPyv~v~~~~~~~-kT~~~~~t~nP~W~e~f~~~v~~~~-~~L~~~V~d~d   84 (525)
                      -.|.|.++|.+|+-+...    +. ....|||+.+.+++.+. ||   .+..||.|+|+|.+.+.... ..+.|.|-|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            368999999999843322    11 11239999999987665 77   55669999999999998766 689999977  


Q ss_pred             CCCCCceeEEEEEEcccC--CCc-ccEEEEccCCC-----c-eEEEEEEEEecc
Q 009787           85 IIWKSTVLGSVIVTVESE--GQT-GAVWYTLDSPS-----G-QVCLHIKTIKLP  129 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~-~~~w~~L~~~~-----G-~i~l~i~~~~~~  129 (525)
                         ...+||.+.+++.++  +.. .+.|+++....     | ++++.+++....
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  133 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAE  133 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence               356999999999999  333 78999996532     3 455555555443

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=1.2e-05  Score=78.59  Aligned_cols=98  Identities=18%  Similarity=0.285  Sum_probs=78.8

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d~d   84 (525)
                      ..-|.|++++|..|..+|.+|-+|||+...+..     .+++|.+.+++++|.|+++|.+.+...   ...+.|.|||.+
T Consensus       232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~  311 (362)
T KOG1013|consen  232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYD  311 (362)
T ss_pred             CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccC
Confidence            455789999999999999999999999998742     245799999999999999999998653   456999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEE
Q 009787           85 IIWKSTVLGSVIVTVESEGQTGAVWY  110 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l~~~~~~w~  110 (525)
                      .....+++|-.....-..+.....|+
T Consensus       312 ~G~s~d~~GG~~~g~~rr~~v~~h~g  337 (362)
T KOG1013|consen  312 IGKSNDSIGGSMLGGYRRGEVHKHWG  337 (362)
T ss_pred             CCcCccCCCcccccccccchhhcCcc
Confidence            88788999877666555544444443

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.70  E-value=3.4e-05  Score=85.93  Aligned_cols=102  Identities=19%  Similarity=0.289  Sum_probs=84.1

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEEEEc
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYDW   83 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V~d~   83 (525)
                      .|+|.|-|.-|++|+-...+..+||||..++.     ..++||+++++|.||.|||....+ +..   ..++|.++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            57888999999999766657789999999984     235589999999999999998887 322   246799999999


Q ss_pred             CCCCCCceeEEEEEEcccCC--CcccEEEEccC
Q 009787           84 DIIWKSTVLGSVIVTVESEG--QTGAVWYTLDS  114 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~--~~~~~w~~L~~  114 (525)
                      +....+.|+|.+.++|.++.  .....||.|..
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            99888999999999999883  33448999964

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=97.68  E-value=3.7e-05  Score=81.36  Aligned_cols=97  Identities=22%  Similarity=0.358  Sum_probs=80.7

Q ss_pred             cccCcccceeeecCCcceeEeeeeeeeecc---cccceeEEEeCCeEEEEecCCCceeEEEEeecccee--ccc-ccccc
Q 009787          159 HQKPGPLQTIFNLLPDEFVELSYSCVIERS---FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQ-HAFIN  232 (525)
Q Consensus       159 ~~k~~~f~~lF~lp~~E~l~~~~~c~l~~~---~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~--k~~-~~~~~  232 (525)
                      +.+++.| .+|+||  |.+..+-.|.++..   ...+||||++.+++||.|.... .+.+++|+..|..  +.. ...++
T Consensus         7 r~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~~~   82 (671)
T KOG4347|consen    7 RLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSLFT   82 (671)
T ss_pred             hhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCccccch
Confidence            4577889 999999  99999999987763   3468999999999999998875 4899999999999  333 45667


Q ss_pred             CcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHH
Q 009787          233 PAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQ  274 (525)
Q Consensus       233 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~  274 (525)
                      ..|.++|+               +...+.|..+..|+..+--
T Consensus        83 ~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k  109 (671)
T KOG4347|consen   83 QLISLFTS---------------NMVGMRFGGLTERLKLLSK  109 (671)
T ss_pred             hhhHHhhc---------------CcceEEecchhhHHHHHHH
Confidence            78899986               6688999999999987743

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.58  E-value=0.00013  Score=62.12  Aligned_cols=97  Identities=20%  Similarity=0.312  Sum_probs=72.4

Q ss_pred             EEEEEEEeecCCCCCC-------------CCCCCcEEEEEE----CCeEEEeecccCCCCCeeccEEEEEec--------
Q 009787           16 IKLELLAAKNLIGANL-------------NGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD--------   70 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~-------------~g~~DPyv~v~~----~~~~~kT~~~~~t~nP~W~e~f~~~v~--------   70 (525)
                      |.|.|++|.||+....             .=..++||.+.+    +.+..+|+++.++-.|.|+.+++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            4688999999985321             112589999985    356678999999999999999999754        


Q ss_pred             C--------CCcEEEEEEEEcCCC----------CCCceeEEEEEEcccC---CCcccEEEEc
Q 009787           71 E--------LPVQIIVTIYDWDII----------WKSTVLGSVIVTVESE---GQTGAVWYTL  112 (525)
Q Consensus        71 ~--------~~~~L~~~V~d~d~~----------~~dd~iG~~~i~l~~l---~~~~~~w~~L  112 (525)
                      +        ...++.++||+.+.-          .+|-.||.+.||+.++   ......||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1        124489999998642          2355899999999988   4556779875

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=97.47  E-value=0.00022  Score=77.81  Aligned_cols=84  Identities=14%  Similarity=0.256  Sum_probs=70.5

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEE-EEECCeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEEcCCCCCC
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAI-ITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKS   89 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~-v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d~~~~d   89 (525)
                      -.|++.+++++|+    ++   ..|||+. +.++.+.++|.+.++|+||+||+...|.+.+ ...-.++.|||++.++++
T Consensus        52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n  124 (644)
T PLN02964         52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN  124 (644)
T ss_pred             ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence            3678899999987    33   3688655 5578899999999999999999998888754 344479999999999999


Q ss_pred             ceeEEEEEEcccC
Q 009787           90 TVLGSVIVTVESE  102 (525)
Q Consensus        90 d~iG~~~i~l~~l  102 (525)
                      +++|.+++++...
T Consensus       125 ~lv~~~e~~~t~f  137 (644)
T PLN02964        125 TLVGYCELDLFDF  137 (644)
T ss_pred             HhhhheeecHhhc
Confidence            9999999988776

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.43  E-value=0.00046  Score=72.60  Aligned_cols=177  Identities=14%  Similarity=0.132  Sum_probs=113.2

Q ss_pred             CCCCCCCCCCCcEEEEEEC-------------------CeEEEeecccCCCCCeeccEEEEE-ecCCCcEEEEEEEEcCC
Q 009787           26 LIGANLNGTSDPYAIITCG-------------------SEKRFSSMVPGSRYPMWGEEFNFS-VDELPVQIIVTIYDWDI   85 (525)
Q Consensus        26 L~~~d~~g~~DPyv~v~~~-------------------~~~~kT~~~~~t~nP~W~e~f~~~-v~~~~~~L~~~V~d~d~   85 (525)
                      +.+.|..+++||-|.+...                   .+..+|+++.+.+||.|.+.|.+. ..+..+.|.+.++|.+.
T Consensus         2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~   81 (529)
T KOG1327|consen    2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDS   81 (529)
T ss_pred             ccccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCC
Confidence            3445566677777776531                   223378999999999999999887 45667889999999875


Q ss_pred             C----CCCceeEEEEEEcccCCCcccE--EEEccC--CCceEEEEEEEEecccCCccccccccccccccccccccCCCce
Q 009787           86 I----WKSTVLGSVIVTVESEGQTGAV--WYTLDS--PSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTV  157 (525)
Q Consensus        86 ~----~~dd~iG~~~i~l~~l~~~~~~--w~~L~~--~~G~i~l~i~~~~~~~~~~~~i~~~l~~~~~~~l~v~~~~~~~  157 (525)
                      .    ...+|+|++...+..+-.....  -+.+.+  ..|...+.+.++......         ...+.-+....+.+++
T Consensus        82 ~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~iti~aee~~~~~---------~~~~~~~~~~~ld~kd  152 (529)
T KOG1327|consen   82 RTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTITISAEEDESDN---------DVVQFSFRAKNLDPKD  152 (529)
T ss_pred             ccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCcccEEEEeecccccC---------ceeeeeeeeeecCccc
Confidence            4    4578999999999988222111  122221  123334444444332221         1122223345677888


Q ss_pred             ecccCcccceeeec---------CCcceeEeeeeeeeec-ccccc----eeEEEeCCeEEEEecCCCc
Q 009787          158 VHQKPGPLQTIFNL---------LPDEFVELSYSCVIER-SFLYH----GRMYVSAWHICFHSNAFSR  211 (525)
Q Consensus       158 ~~~k~~~f~~lF~l---------p~~E~l~~~~~c~l~~-~~~~~----Grlyis~~~~~F~s~~~g~  211 (525)
                      +..++++|...++.         ...|.+....+..|.. .++++    +..-.+....|++.+..|.
T Consensus       153 ~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  153 FFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             ccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCC
Confidence            99999999988863         2448888888888877 44443    3344555577777766653

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.43  E-value=3e-05  Score=85.28  Aligned_cols=104  Identities=18%  Similarity=0.249  Sum_probs=85.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEE-ec---------CCCcEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS-VD---------ELPVQIIVTI   80 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~-v~---------~~~~~L~~~V   80 (525)
                      ...+.++++|.+|+.|.+.+..+.+|||+.+..-++.+.|.++.+++||.|+.+..|. +.         .....+.++|
T Consensus       203 ~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~  282 (1105)
T KOG1326|consen  203 VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV  282 (1105)
T ss_pred             hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence            4456788899999999999999999999999999999999999999999999999886 21         1234488999


Q ss_pred             EEcCCCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009787           81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~  114 (525)
                      ||.++.+.++|+|.......-. ..+.-.|+++..
T Consensus       283 yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~r  317 (1105)
T KOG1326|consen  283 YDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTMR  317 (1105)
T ss_pred             ehhhhhchHHhhcccccceEEEecCCccceEEeec
Confidence            9999999999999977655444 345667888754

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.25  E-value=0.00052  Score=72.19  Aligned_cols=82  Identities=24%  Similarity=0.323  Sum_probs=66.8

Q ss_pred             EEeecCCCCCCCCCCCcEEEEEEC--C----eEEEeecccCCCCCeeccEEEEEe-----cCCCcEEEEEEEEcCCCCCC
Q 009787           21 LAAKNLIGANLNGTSDPYAIITCG--S----EKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQIIVTIYDWDIIWKS   89 (525)
Q Consensus        21 ~~A~~L~~~d~~g~~DPyv~v~~~--~----~~~kT~~~~~t~nP~W~e~f~~~v-----~~~~~~L~~~V~d~d~~~~d   89 (525)
                      .+|++|.++|.++++|||..+.--  .    ..++|++++++++|.| ..|.+..     .+....+.+.+||++..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w-~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQW-APFSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcc-cccccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            568999999999999999988742  1    2248999999999999 4455543     23467799999999999999


Q ss_pred             ceeEEEEEEcccCC
Q 009787           90 TVLGSVIVTVESEG  103 (525)
Q Consensus        90 d~iG~~~i~l~~l~  103 (525)
                      ++||.+..++..+.
T Consensus       222 ~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQ  235 (529)
T ss_pred             CceeEecccHHHhc
Confidence            99999999998883

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.0001  Score=72.19  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEE-ecC-C--CcEEEEEEEEcC
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VDE-L--PVQIIVTIYDWD   84 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~-v~~-~--~~~L~~~V~d~d   84 (525)
                      ..+..+|.+|++|++++..+..|||+.+.+..     ...+|++..+++||.|+|+-... +.. .  ...+++.|.|.+
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~  172 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND  172 (362)
T ss_pred             hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence            46789999999999999999999999998752     23578899999999999987766 222 1  234788999999


Q ss_pred             CCCCCceeEEEEEEcccCC
Q 009787           85 IIWKSTVLGSVIVTVESEG  103 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l~  103 (525)
                      .+...+++|+..+.+..+.
T Consensus       173 ~~~~~~sqGq~r~~lkKl~  191 (362)
T KOG1013|consen  173 KKTHNESQGQSRVSLKKLK  191 (362)
T ss_pred             ccccccCcccchhhhhccC
Confidence            9999999999998888773

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.0004  Score=69.20  Aligned_cols=104  Identities=13%  Similarity=0.241  Sum_probs=84.0

Q ss_pred             CCceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCe-----EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEE-c
Q 009787           11 NSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD-W   83 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~~~-----~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d-~   83 (525)
                      ...|.|.|.|++|++|..+.. ...++|||.+++...     +.+|+...++++|.+-....|+-..+...|.+.||- +
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy  345 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY  345 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence            347899999999999987753 346899999997432     337888899999988888888877778889999995 5


Q ss_pred             CCCCCCceeEEEEEEcccCC---CcccEEEEccC
Q 009787           84 DIIWKSTVLGSVIVTVESEG---QTGAVWYTLDS  114 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~---~~~~~w~~L~~  114 (525)
                      .++..+.|+|.+.+-+++++   .....||+|.+
T Consensus       346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            66667889999999999982   35678999976

>PF14470 bPH_3: Bacterial PH domain

Probab=96.80  E-value=0.026  Score=46.17  Aligned_cols=84  Identities=19%  Similarity=0.217  Sum_probs=65.8

Q ss_pred             cCCcceeEeeeeeeeecc-cccceeEEEeCCeEEEEecC-CCceeEEEEeecccee-ccccccccCcEEEEEecCCCCCC
Q 009787          171 LLPDEFVELSYSCVIERS-FLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDE-RSQHAFINPAITIILRMGAGGHG  247 (525)
Q Consensus       171 lp~~E~l~~~~~c~l~~~-~~~~Grlyis~~~~~F~s~~-~g~~~~~~i~~~~i~~-k~~~~~~~~~i~i~~~~~~~~~~  247 (525)
                      |.++|.+.....|.+... ....|-+.+|+.++.|+... ++......+|+++|.+ .....++...|.|.+        
T Consensus         1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~--------   72 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET--------   72 (96)
T ss_pred             CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE--------
Confidence            567899999999987742 23359999999999999775 6678889999999999 555666778899998        


Q ss_pred             CCCCCCCCCceeEEEeeeechHHH
Q 009787          248 VPPLGSPDGRVRYKFASFWNRNHA  271 (525)
Q Consensus       248 ~~~~~~~~~~~~~~f~sf~~rd~~  271 (525)
                              +..++.|.++ ..+++
T Consensus        73 --------~~~~~~i~~i-~k~~~   87 (96)
T PF14470_consen   73 --------NGEKIKIDNI-QKGDV   87 (96)
T ss_pred             --------CCEEEEEEEc-CHHHH
Confidence                    4578888888 44443

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.011  Score=62.73  Aligned_cols=99  Identities=17%  Similarity=0.300  Sum_probs=76.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEeecccCCCCCeeccEEEEEecCC----CcEEEEEEEEc
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW   83 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~~~~~t~nP~W~e~f~~~v~~~----~~~L~~~V~d~   83 (525)
                      .++|.|+.|.+|+=.. .|.--||+.+.+-+       +++.|++..++-.|.+||+|.|-+...    .-+|.+.|-|+
T Consensus      1126 kvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred             eEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence            5789999999997443 66778999998632       234588888888999999999997542    23488888887


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      --...|..+|.+.+.|.++  ...-..|++|..
T Consensus      1205 CFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred             eeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence            6555678999999999998  444567999965

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=96.44  E-value=0.0042  Score=52.23  Aligned_cols=65  Identities=22%  Similarity=0.315  Sum_probs=45.6

Q ss_pred             eEeeeeeeeec-ccccceeEEEeCCeEEEEec---------------CCCceeEEEEeecccee--ccccccccCcEEEE
Q 009787          177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDE--RSQHAFINPAITII  238 (525)
Q Consensus       177 l~~~~~c~l~~-~~~~~Grlyis~~~~~F~s~---------------~~g~~~~~~i~~~~i~~--k~~~~~~~~~i~i~  238 (525)
                      ++-++.|.+-. .....|.+.++.++++|..+               .........+|+++|..  +..-.+-..||+|+
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF   81 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIF   81 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEE
Confidence            45678999876 44568999999999999986               33334567899999999  33334446799999


Q ss_pred             Eec
Q 009787          239 LRM  241 (525)
Q Consensus       239 ~~~  241 (525)
                      +.+
T Consensus        82 ~~d   84 (106)
T PF14844_consen   82 FSD   84 (106)
T ss_dssp             ETT
T ss_pred             EcC
Confidence            963

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=96.27  E-value=0.53  Score=42.59  Aligned_cols=149  Identities=14%  Similarity=0.140  Sum_probs=102.3

Q ss_pred             eeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecC-CC-----CCCcceeEeEEE
Q 009787          339 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK-SP-----IYPRDTAMTESQ  412 (525)
Q Consensus       339 ~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~-~~-----~gpk~~~~~~~Q  412 (525)
                      ..+||+|++++|.+|.+  ..||..-+...+..+..+..-...++  +.+..+.-..|-. -|     +-+..-.+.+++
T Consensus         4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~~--g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e   79 (159)
T PF10698_consen    4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDGD--GVRVTVRQTVPADKLPSAARKFVGGDLRVTRTE   79 (159)
T ss_pred             EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcCC--eEEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence            56899999999988875  78888888888887777777666554  3333333333321 11     344445667777


Q ss_pred             EEEecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHH
Q 009787          413 HAVLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE  492 (525)
Q Consensus       413 ~~~~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~  492 (525)
                      +.....+ ..+..+.....+    |.-..+.....++. ...+|++.+.   +.|+-. =.++-++||+.+.+...+.++
T Consensus        80 ~w~~~~~-g~~~g~~~~~~~----G~P~~~~G~~~L~~-~~~gt~~~~~---g~v~v~-VPlvGgkiE~~v~~~~~~~~~  149 (159)
T PF10698_consen   80 TWTPLDD-GRRTGTFTVSIP----GAPVSISGTMRLRP-DGGGTRLTVE---GEVKVK-VPLVGGKIEKAVAENLRKLLE  149 (159)
T ss_pred             EEecCCC-CeEEEEEEEEec----CceEEEEEEEEEec-CCCCEEEEEE---EEEEEE-EccccHHHHHHHHHHHHHHHH
Confidence            7743333 355555555544    55589999999999 5567999888   766432 347899999999998888888


Q ss_pred             HHHHHHHHH
Q 009787          493 LMLETARSY  501 (525)
Q Consensus       493 ~~~~~~~~~  501 (525)
                      ...+.+.+.
T Consensus       150 ~e~~~~~~w  158 (159)
T PF10698_consen  150 AEQEFTAEW  158 (159)
T ss_pred             HHHHHHHhh
Confidence            777776654

The function is not known.

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.13  E-value=0.0075  Score=47.96  Aligned_cols=93  Identities=20%  Similarity=0.282  Sum_probs=65.3

Q ss_pred             EEEEEEeecCCCCCCCCCCCc--EEE--EEEC-CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC
Q 009787           17 KLELLAAKNLIGANLNGTSDP--YAI--ITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK   88 (525)
Q Consensus        17 ~V~i~~A~~L~~~d~~g~~DP--yv~--v~~~-~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~   88 (525)
                      -++++.|++|.-....| -+|  |+.  +.+. ....+|.......||+|.|+|.|.+..   ....|-|.|+.  ...+
T Consensus         2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R   78 (103)
T cd08684           2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence            47889999987544222 234  333  2233 234588888999999999999998643   24558899998  4456


Q ss_pred             CceeEEEEEEcccCC-CcccEEEEc
Q 009787           89 STVLGSVIVTVESEG-QTGAVWYTL  112 (525)
Q Consensus        89 dd~iG~~~i~l~~l~-~~~~~w~~L  112 (525)
                      ..-||.+.+.++.++ ...++|.++
T Consensus        79 Ke~iG~~sL~l~s~geeE~~HW~e~  103 (103)
T cd08684          79 KRTIGECSLSLRTLSTQETDHWLEI  103 (103)
T ss_pred             cceeeEEEeecccCCHHHhhhhhcC
Confidence            779999999999984 445667653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.08  E-value=0.013  Score=57.20  Aligned_cols=114  Identities=13%  Similarity=0.124  Sum_probs=78.9

Q ss_pred             CCceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009787           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~--~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~   87 (525)
                      ...|.|.++++.+++|+-...  .-..+-||++.++.+. .+|.+.....-=.|.|+|..++.+ ...+.+-||.|+.-.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR  126 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence            457899999999999986543  4457899999988654 366666666667899999999876 677899999999876


Q ss_pred             CCceeEEEEEEcccC-CCcccE--EEEccCCCceEEEEEEEE
Q 009787           88 KSTVLGSVIVTVESE-GQTGAV--WYTLDSPSGQVCLHIKTI  126 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l-~~~~~~--w~~L~~~~G~i~l~i~~~  126 (525)
                      ++++.-..-+.+..+ ....+.  -..|.+ .|++-+++.+.
T Consensus       127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~~~  167 (442)
T KOG1452|consen  127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLPLA  167 (442)
T ss_pred             hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecccC
Confidence            666533333333333 222333  334454 57777776655

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=95.96  E-value=0.0087  Score=60.50  Aligned_cols=113  Identities=10%  Similarity=0.100  Sum_probs=79.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC---C---------cEE
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---P---------VQI   76 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~---------~~L   76 (525)
                      -.|.+.|+++.+++.....--.|-|+.+.+-     .++.+|.+++.+.+|.|+|.|-+.+...   .         ..+
T Consensus       367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~  446 (523)
T KOG3837|consen  367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK  446 (523)
T ss_pred             hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence            3567778888887765422234667777642     3345789999999999999999998652   1         128


Q ss_pred             EEEEEEcCCCC-CCceeEEEEEEcccC--CCcccEEEEccC----CCceEEEEEEEE
Q 009787           77 IVTIYDWDIIW-KSTVLGSVIVTVESE--GQTGAVWYTLDS----PSGQVCLHIKTI  126 (525)
Q Consensus        77 ~~~V~d~d~~~-~dd~iG~~~i~l~~l--~~~~~~w~~L~~----~~G~i~l~i~~~  126 (525)
                      +|++|++..+- +|.++|.+.+.+..+  .......++|..    -+|.+.+.+++.
T Consensus       447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            99999987654 588999999999888  333445677754    236666666665

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=94.46  E-value=0.56  Score=47.74  Aligned_cols=110  Identities=19%  Similarity=0.263  Sum_probs=83.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC--------CCcEEEEEEEEcC-CC
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II   86 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~--------~~~~L~~~V~d~d-~~   86 (525)
                      +.|.|++|+|++...   .-.-.+..+++++...|..+..+-.|.|+-....++..        ...+|++++|-.| ..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            678999999998652   33456677789999999999999999999888777642        3556999999988 55


Q ss_pred             CCCceeEEEEEEcccC---C----CcccEEEEccCC-------CceEEEEEEEEec
Q 009787           87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKL  128 (525)
Q Consensus        87 ~~dd~iG~~~i~l~~l---~----~~~~~w~~L~~~-------~G~i~l~i~~~~~  128 (525)
                      +..+.||.+.++|...   .    .....||+|.+-       +.++.+.+.++..
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~  134 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD  134 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence            6678999999999876   2    245679999763       2446666666643

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=94.14  E-value=0.55  Score=37.84  Aligned_cols=85  Identities=13%  Similarity=0.260  Sum_probs=60.1

Q ss_pred             CCCCcEEEEEECCeEE-EeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEE
Q 009787           33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT  111 (525)
Q Consensus        33 g~~DPyv~v~~~~~~~-kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~  111 (525)
                      |.++-.+++.+++... +|.-.. ..+..|++.|.++++. .++|.|.||-+|-   ..+.|-..+.|.+..  ...-.+
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~--~~~~~~   79 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDER--HEVQLD   79 (98)
T ss_pred             cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhc--ccceec
Confidence            3477889999887554 565543 3589999999999987 7889999998774   345666667777642  244556


Q ss_pred             ccCCCceEEEEEEE
Q 009787          112 LDSPSGQVCLHIKT  125 (525)
Q Consensus       112 L~~~~G~i~l~i~~  125 (525)
                      |.+ .|.+..++.+
T Consensus        80 lep-qg~l~~ev~f   92 (98)
T cd08687          80 MEP-QLCLVAELTF   92 (98)
T ss_pred             ccc-ccEEEEEEEe
Confidence            665 6777766665

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=93.82  E-value=0.17  Score=56.04  Aligned_cols=101  Identities=18%  Similarity=0.198  Sum_probs=72.1

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEeecc-cCCCCCeeccE-EEEE-e-cCCCcEE
Q 009787            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMV-PGSRYPMWGEE-FNFS-V-DELPVQI   76 (525)
Q Consensus         8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~-~~t~nP~W~e~-f~~~-v-~~~~~~L   76 (525)
                      ..+.=.+.+.|+|++|.-|..++    ...||.+.+-       ...++|++. .++.||+|+|+ |.|. | -+.-..|
T Consensus       697 VdgvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~l  772 (1189)
T KOG1265|consen  697 VDGVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASL  772 (1189)
T ss_pred             ccceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhe
Confidence            34445678999999999998776    3479998862       234578777 45799999865 7887 3 2334569


Q ss_pred             EEEEEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787           77 IVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (525)
Q Consensus        77 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (525)
                      +|.||+.+    ..|||+-.+|++-+..+ -..+.|....+
T Consensus       773 RiavyeEg----gK~ig~RIlpvd~l~~G-Yrhv~LRse~N  808 (1189)
T KOG1265|consen  773 RIAVYEEG----GKFIGQRILPVDGLNAG-YRHVCLRSESN  808 (1189)
T ss_pred             eeeeeccC----CceeeeeccchhcccCc-ceeEEecCCCC
Confidence            99999975    35999999999988543 33456655433

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=93.54  E-value=1.4  Score=39.52  Aligned_cols=93  Identities=18%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             CCCceEEEEEEEEeecCCCCCCC--CCCCcEEEE--EECCeEEEeecccCCCCCeeccEEEEEecCC-------------
Q 009787           10 TNSAYLIKLELLAAKNLIGANLN--GTSDPYAII--TCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-------------   72 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~--g~~DPyv~v--~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-------------   72 (525)
                      .+...-|.|+|..++-+..--..  +..+....+  .+.+++++|+.+..+.+|.|+|.|.|++...             
T Consensus         5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls   84 (156)
T PF15627_consen    5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS   84 (156)
T ss_pred             CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence            34566788999988755432111  344444444  4689999999999999999999999997532             


Q ss_pred             -CcEEEEEEEEcCCCCCCceeEEEEEEcccC
Q 009787           73 -PVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (525)
Q Consensus        73 -~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l  102 (525)
                       ...|++-|---|..+...++|.-.+....+
T Consensus        85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~v  115 (156)
T PF15627_consen   85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKV  115 (156)
T ss_pred             CCCceEEEEEEecCCCceEeeeeceehHHHH
Confidence             234888888777766667888888887776

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.44  E-value=0.57  Score=43.07  Aligned_cols=86  Identities=22%  Similarity=0.248  Sum_probs=57.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEe--cCC--CcEEEEEEEEcC
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DEL--PVQIIVTIYDWD   84 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v--~~~--~~~L~~~V~d~d   84 (525)
                      .++|+|+.+.+|...  ....+-|+.+.+  +++..    .|+....+..+.|||...|++  .+.  ...|.|.||+..
T Consensus         9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            578999999999762  234566777653  44332    455444456799999999975  332  456999999975


Q ss_pred             CCC----------------CCceeEEEEEEcccC
Q 009787           85 IIW----------------KSTVLGSVIVTVESE  102 (525)
Q Consensus        85 ~~~----------------~dd~iG~~~i~l~~l  102 (525)
                      ...                .+..||.+.+++-+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            322                135778777776654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.40  E-value=0.68  Score=41.88  Aligned_cols=84  Identities=14%  Similarity=0.189  Sum_probs=57.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcC
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWD   84 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d   84 (525)
                      .++|+|+++.++...+   .+|-|+.+.+  +++..    .|..+.. .++.|||...|.+.  +  ...+|.|+||+..
T Consensus         9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            5789999999987643   4678888764  44322    3443332 57999999999753  3  3556999999975


Q ss_pred             CCC----CCceeEEEEEEcccC
Q 009787           85 IIW----KSTVLGSVIVTVESE  102 (525)
Q Consensus        85 ~~~----~dd~iG~~~i~l~~l  102 (525)
                      ...    ....+|.+.++|-+.
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             cccCCCCceEEEEEEEEEEECC
Confidence            321    124689998888765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=92.75  E-value=2.7  Score=40.18  Aligned_cols=154  Identities=12%  Similarity=0.158  Sum_probs=80.5

Q ss_pred             eeee-ecCHHHHHHHHcCCCCchHHHHHHHc-CCcceEeccceecCCCCCcEEEEEEE-eecCCCCCCcceeEeEEEEEE
Q 009787          339 NDVF-PCTAEQFFTLLFSDDSKFTNEYRAAR-KDSNLVMGQWHAADEYDGQVREVAFR-SLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       339 ~~~~-~~s~~~~f~~lf~d~s~f~~~~~~~~-~~~~i~~~~W~~~~~~~~~~R~~~y~-~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      ..++ ++|++.+|+++.+  ..+..++-... ....+.  ..   ++ +  .+ +.|. .....|+.++.--..  ....
T Consensus        52 ~~~~~~~s~e~~~~~l~D--~~~r~~Wd~~~~e~~~ie--~~---d~-~--~~-i~y~~~~~P~pvs~RDfV~~--r~~~  118 (222)
T cd08871          52 SAIFPDVPAETLYDVLHD--PEYRKTWDSNMIESFDIC--QL---NP-N--ND-IGYYSAKCPKPLKNRDFVNL--RSWL  118 (222)
T ss_pred             EEEeCCCCHHHHHHHHHC--hhhhhhhhhhhceeEEEE--Ec---CC-C--CE-EEEEEeECCCCCCCCeEEEE--EEEE
Confidence            4455 5899999998864  33333332221 111122  11   11 1  12 2332 222234566543221  2222


Q ss_pred             ecCCCCeEEEEEeeeeCCCCCCCeE----EEEEEEEEEeeCCCceEEEEEEeeeeEEEeec--ceeeeeeeechHHHHHH
Q 009787          416 LSPDKKIFVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAHFKKW--CVIQFKIKTGAVNKYKK  489 (525)
Q Consensus       416 ~~~~~~~~~v~~~~~~~~vPygd~F----~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~--~~~K~~Ie~~~~~~~~~  489 (525)
                      .. ++.++++......+++|-...+    .....|.|++.++++|++...   +.++..++  +|+-..+-+.+.-...+
T Consensus       119 ~~-~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~---~~~Dp~G~IP~~lvN~~~~~~~~~~l~  194 (222)
T cd08871         119 EF-GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYV---TQNDPKGSLPKWVVNKATTKLAPKVMK  194 (222)
T ss_pred             eC-CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEE---EecCCCCCcCHHHHHHHHHHHhHHHHH
Confidence            22 2456666666666788866542    234579999998889999998   88877663  33333333333334444


Q ss_pred             HHHHHHHHHHHHHhhcCCCC
Q 009787          490 EVELMLETARSYIKICTSGG  509 (525)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~  509 (525)
                      .++..+....+..+.++...
T Consensus       195 ~l~k~~~~y~~~~~~~~~~~  214 (222)
T cd08871         195 KLHKAALKYPEWKAKNNPEF  214 (222)
T ss_pred             HHHHHHHHHHHHHHhcCCCC
Confidence            55555555555555555443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=92.65  E-value=0.57  Score=39.11  Aligned_cols=87  Identities=18%  Similarity=0.258  Sum_probs=58.3

Q ss_pred             ceeEeeeeeeeec-ccccceeEEEeCCeEEEEecC----C-Cc---------eeEEEEeecccee--ccccccccCcEEE
Q 009787          175 EFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SR---------QMKVIIPIGDIDE--RSQHAFINPAITI  237 (525)
Q Consensus       175 E~l~~~~~c~l~~-~~~~~Grlyis~~~~~F~s~~----~-g~---------~~~~~i~~~~i~~--k~~~~~~~~~i~i  237 (525)
                      |.++-+..|.+-. -.-..|++-||..+++|....    + +.         .....+++++|.+  +..-.+-..|++|
T Consensus         1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEi   80 (108)
T cd01201           1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALEL   80 (108)
T ss_pred             CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEE
Confidence            3566778888766 334569999999999999631    1 11         1123788889888  3333444569999


Q ss_pred             EEecCCCCCCCCCCCCCCCceeEEEeeeechHHHHHHHHH
Q 009787          238 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR  277 (525)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~  277 (525)
                      +..+               + .=+|-+|-+++....++..
T Consensus        81 F~~d---------------~-~~~f~~F~~~~~~k~vv~~  104 (108)
T cd01201          81 FLAS---------------R-TSIFFAFPDQNAVKKVVYA  104 (108)
T ss_pred             EEeC---------------C-ceEEEEeCcHHHHHHHHhh
Confidence            9952               2 3355588888777666654

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=92.54  E-value=4.5  Score=35.53  Aligned_cols=115  Identities=18%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE---EEeecc-cCCCCCeeccEEEEEec----C-----CCcEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMV-PGSRYPMWGEEFNFSVD----E-----LPVQII   77 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~~-~~t~nP~W~e~f~~~v~----~-----~~~~L~   77 (525)
                      .....+.++|.+..+++.    ...-.|+....+...   ..|... ..+-.-.|+++|.+.+.    .     ....+.
T Consensus         4 ~~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~   79 (143)
T PF10358_consen    4 AVKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK   79 (143)
T ss_pred             eeeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence            346678899999999876    223445555555443   334333 33456899999988742    1     133488


Q ss_pred             EEEEEcCCCCCCceeEEEEEEcccC-C---CcccEEEEccCC-CceEEEEEEEEecc
Q 009787           78 VTIYDWDIIWKSTVLGSVIVTVESE-G---QTGAVWYTLDSP-SGQVCLHIKTIKLP  129 (525)
Q Consensus        78 ~~V~d~d~~~~dd~iG~~~i~l~~l-~---~~~~~w~~L~~~-~G~i~l~i~~~~~~  129 (525)
                      |.|+.....++...+|.+.++|.+. .   .....-++|... .....+.+.+....
T Consensus        80 ~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~  136 (143)
T PF10358_consen   80 FSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE  136 (143)
T ss_pred             EEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence            9999875333336899999999998 2   233445666553 44444444444333

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.38  E-value=0.92  Score=40.85  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=57.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEe--cC--CCcEEEEEEEEcC
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSV--DE--LPVQIIVTIYDWD   84 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v--~~--~~~~L~~~V~d~d   84 (525)
                      .++|++....++...+ ....+-|+.+.+  +++..    .|.......++.|||...|.+  ..  ....|.|+||+.+
T Consensus         9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            4678888888776522 234566776654  43321    333333336899999999985  33  2556999999977


Q ss_pred             CCC--CCceeEEEEEEcccC
Q 009787           85 IIW--KSTVLGSVIVTVESE  102 (525)
Q Consensus        85 ~~~--~dd~iG~~~i~l~~l  102 (525)
                      ..+  .+..||.+.+++-+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            544  457899999988765

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.14  E-value=0.73  Score=41.72  Aligned_cols=71  Identities=17%  Similarity=0.241  Sum_probs=50.9

Q ss_pred             CCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcCCCCCCceeEEEEEEccc
Q 009787           32 NGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWDIIWKSTVLGSVIVTVES  101 (525)
Q Consensus        32 ~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~  101 (525)
                      ...+|-||.+.+  +++..    .|..+.-+..+.|||...|.+.  +  ....|.|+||+.+..+....+|.+.+++-+
T Consensus        27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            345778888765  33322    4555555567899999999863  3  356699999998765567789999998876


Q ss_pred             C
Q 009787          102 E  102 (525)
Q Consensus       102 l  102 (525)
                      .
T Consensus       107 ~  107 (159)
T cd08397         107 K  107 (159)
T ss_pred             C
Confidence            5

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=92.08  E-value=5.2  Score=37.80  Aligned_cols=142  Identities=13%  Similarity=0.221  Sum_probs=69.7

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEee---cCCCCCCcceeEeEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSL---CKSPIYPRDTAMTESQH  413 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~---~~~~~gpk~~~~~~~Q~  413 (525)
                      -.+.++++|++++|..++.| .....++..       .+...+.-+..+..++ +.|..-   ...++.++.  ....++
T Consensus        51 k~~~~i~~~~~~v~~~l~~d-~~~~~~Wd~-------~~~~~~~i~~~d~~~~-i~y~~~~~~~~~~vs~RD--fV~~r~  119 (208)
T cd08868          51 RLTGVLDCPAEFLYNELVLN-VESLPSWNP-------TVLECKIIQVIDDNTD-ISYQVAAEAGGGLVSPRD--FVSLRH  119 (208)
T ss_pred             EEEEEEcCCHHHHHHHHHcC-ccccceecC-------cccceEEEEEecCCcE-EEEEEecCcCCCcccccc--eEEEEE
Confidence            45679999999999988864 322221111       1111111111112223 344321   112344443  222233


Q ss_pred             EEecCCCCeEEEEEeeeeCCCCCCCeE-E---EEEEEEEEeeCC--CceEEEEEEeeeeEEEeecceeeeeeeechHHHH
Q 009787          414 AVLSPDKKIFVFETVQQAHDVPFGSYF-E---IHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKY  487 (525)
Q Consensus       414 ~~~~~~~~~~~v~~~~~~~~vPygd~F-~---v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~  487 (525)
                      ..... +.++++.....-+..|-..-| +   ..+.|.|++.++  ++|.+...   +.++..+|- -+.++.+.+....
T Consensus       120 ~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~---~~~Dp~G~i-P~~lvN~~~~~~~  194 (208)
T cd08868         120 WGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWL---LNTDLKGWL-PQYLVDQALASVL  194 (208)
T ss_pred             EEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEE---EEECCCCCC-cceeeehhhHHHH
Confidence            33333 334444333333566654443 2   558899999864  67888887   777776532 2333444444444


Q ss_pred             HHHHHHH
Q 009787          488 KKEVELM  494 (525)
Q Consensus       488 ~~~~~~~  494 (525)
                      .+.++.+
T Consensus       195 ~~~~~~L  201 (208)
T cd08868         195 LDFMKHL  201 (208)
T ss_pred             HHHHHHH
Confidence            4444433

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=91.19  E-value=13  Score=34.73  Aligned_cols=151  Identities=14%  Similarity=0.184  Sum_probs=81.8

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCC-CCCCcceeEeEEEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKS-PIYPRDTAMTESQHAV  415 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~-~~gpk~~~~~~~Q~~~  415 (525)
                      -+..+++.++.++|..++.| .....++........+.    +..++ +.  +-+-+..+... |+.|+.--..  .+..
T Consensus        48 k~~~~v~~~~~~~~~~~~~d-~~~r~~Wd~~~~~~~~i----e~~~~-~~--~i~~~~~~~~~~p~~~RDfv~~--r~~~  117 (206)
T smart00234       48 RAVGVVPMVCADLVEELMDD-LRYRPEWDKNVAKAETL----EVIDN-GT--VIYHYVSKFVAGPVSPRDFVFV--RYWR  117 (206)
T ss_pred             EEEEEEecChHHHHHHHHhc-ccchhhCchhcccEEEE----EEECC-CC--eEEEEEEecccCcCCCCeEEEE--EEEE
Confidence            44678888898877777753 43333332222221111    11111 22  22233333333 5555542221  1122


Q ss_pred             ecCCCCeEEEEEeeeeCCCCC-CCe---EEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHH
Q 009787          416 LSPDKKIFVFETVQQAHDVPF-GSY---FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEV  491 (525)
Q Consensus       416 ~~~~~~~~~v~~~~~~~~vPy-gd~---F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~  491 (525)
                      ...++.++++......+..|- ..+   ....+.|+|++.+++.|++...   ..++..+| +-+.++...+.......+
T Consensus       118 ~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~---~~~D~~G~-iP~~lvn~~~~~~~~~~~  193 (206)
T smart00234      118 ELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWV---SHADLKGW-LPHWLVRSLIKSGLAEFA  193 (206)
T ss_pred             EcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEE---EEEecCCC-ccceeehhhhhhhHHHHH
Confidence            233444555444555566663 333   3456899999999889999998   88888775 346666665566666666


Q ss_pred             HHHHHHHHHH
Q 009787          492 ELMLETARSY  501 (525)
Q Consensus       492 ~~~~~~~~~~  501 (525)
                      +.|.+.+++.
T Consensus       194 ~~~~~~~~~~  203 (206)
T smart00234      194 KTWVATLQKH  203 (206)
T ss_pred             HHHHHHHHHH
Confidence            6666555543

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=90.75  E-value=10  Score=35.18  Aligned_cols=146  Identities=14%  Similarity=0.150  Sum_probs=74.7

Q ss_pred             eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEe-ecCCCCCCcceeEeEEEEE
Q 009787          336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS-LCKSPIYPRDTAMTESQHA  414 (525)
Q Consensus       336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~-~~~~~~gpk~~~~~~~Q~~  414 (525)
                      .-...+++++++++|+++..  ...+.+|........+.    +..++ +   ..+.|.. ....|+.+...-  ...+.
T Consensus        43 ~k~~~~i~~s~e~v~~vi~d--~e~~~~w~~~~~~~~vi----e~~~~-~---~~i~~~~~~~p~pvs~Rdfv--~~~~~  110 (195)
T cd08876          43 FKAVAEVDASIEAFLALLRD--TESYPQWMPNCKESRVL----KRTDD-N---ERSVYTVIDLPWPVKDRDMV--LRSTT  110 (195)
T ss_pred             EEEEEEEeCCHHHHHHHHhh--hHhHHHHHhhcceEEEe----ecCCC-C---cEEEEEEEecccccCCceEE--EEEEE
Confidence            34566899999999999864  44455554433222221    11111 1   2233332 211223333221  12222


Q ss_pred             EecCCCCeEEEEEeeeeCCCCCCC----eEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHH
Q 009787          415 VLSPDKKIFVFETVQQAHDVPFGS----YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKE  490 (525)
Q Consensus       415 ~~~~~~~~~~v~~~~~~~~vPygd----~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~  490 (525)
                      ....++..++|.......++|-..    -+.....|.|+..++++|+|...   ..+.+.+ .+.+.+|...+.    +.
T Consensus       111 ~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~---~~~dp~g-~iP~~lv~~~~~----~~  182 (195)
T cd08876         111 EQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQ---AYADPGG-SIPGWLANAFAK----DA  182 (195)
T ss_pred             EEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEE---EEeCCCC-CCCHHHHHHHHH----HH
Confidence            222212355555554333355332    35667889999999999999998   8877754 334444444322    33


Q ss_pred             HHHHHHHHHHH
Q 009787          491 VELMLETARSY  501 (525)
Q Consensus       491 ~~~~~~~~~~~  501 (525)
                      ...+++.+++.
T Consensus       183 ~~~~l~~l~~~  193 (195)
T cd08876         183 PYNTLENLRKQ  193 (195)
T ss_pred             HHHHHHHHHHh
Confidence            34444444443

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=89.90  E-value=14  Score=33.05  Aligned_cols=143  Identities=12%  Similarity=0.125  Sum_probs=83.9

Q ss_pred             ceeeeeeeecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEE
Q 009787          335 VGIYNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQH  413 (525)
Q Consensus       335 ~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~  413 (525)
                      +...+.+.++|+++||.++.. ...++.+.. ..-+.-++..+.|..    ++..|.++|...     ||.   ...+|+
T Consensus         5 ~~~~E~~~~~~a~k~~ka~~~-~~~llpki~P~~i~sve~~eGdgg~----gGSIk~~~f~~~-----~~~---~~~Kek   71 (151)
T PF00407_consen    5 KLEVEVEVKVSADKLWKAFKS-SPHLLPKILPHVIKSVEVVEGDGGP----GGSIKKWTFGPG-----GPF---KYVKEK   71 (151)
T ss_dssp             EEEEEEEESS-HHHHHHHHTT-HHHHHHHHSTTTEEEEEEEESSSST----TT-EEEEEEETT-----SSE---EEEEEE
T ss_pred             EEEEEEEecCCHHHHHHHHhc-CccchhhhChhhceeEEEEccCCCC----CCeEEEEEecCC-----CCc---ceeEEE
Confidence            345677899999999999876 344455443 233445666788874    467899998762     442   345788


Q ss_pred             EEecCCC-CeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeec-hHHHHHHHH
Q 009787          414 AVLSPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTG-AVNKYKKEV  491 (525)
Q Consensus       414 ~~~~~~~-~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~-~~~~~~~~~  491 (525)
                      +...++. ..+..  +.---| +.+++.+-.....+.+.++++|.++.+     ++|.+..      +.. .-+...+.+
T Consensus        72 ve~~D~~~~~~~y--~viEGd-~l~~~~~~~~~~~~~~~~~g~~v~k~t-----~~Ye~~~------~~~~~p~~~~~~~  137 (151)
T PF00407_consen   72 VEAIDEENKTITY--TVIEGD-VLGDYKSFKSTIQKIPKGDGGCVVKWT-----IEYEKKG------EDVPPPEKYLDFA  137 (151)
T ss_dssp             EEEEETTTTEEEE--EEEEET-TGTTTEEEEEEEEEEEETTSCEEEEEE-----EEEEESS------TSCHHHHHHHHHH
T ss_pred             EEeecCCCcEEEE--EEEecc-ccccEEEEEEEEEecCCCCCceEEEEE-----EEEEecC------CCCCCcHHHHHHH
Confidence            8764433 33333  222123 344555555555555777777877776     5555521      222 345566667


Q ss_pred             HHHHHHHHHHHhh
Q 009787          492 ELMLETARSYIKI  504 (525)
Q Consensus       492 ~~~~~~~~~~~~~  504 (525)
                      ..+++.++.++-+
T Consensus       138 ~~~~K~ieayLla  150 (151)
T PF00407_consen  138 VGMFKAIEAYLLA  150 (151)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            7777777777654

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=89.88  E-value=7  Score=37.06  Aligned_cols=143  Identities=9%  Similarity=0.049  Sum_probs=73.3

Q ss_pred             eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCC---CCCcceeEeEEEEE
Q 009787          338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSP---IYPRDTAMTESQHA  414 (525)
Q Consensus       338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~---~gpk~~~~~~~Q~~  414 (525)
                      .+.++++++++++..+|.|-.. ..++.       -.+..-+.-...+..+. +.|..-...|   +.++..  ...+..
T Consensus        53 ~e~~i~~~~~~l~~~l~~d~e~-~~~W~-------~~~~~~~vl~~id~~~~-i~y~~~~p~p~~~vs~RD~--V~~~~~  121 (209)
T cd08905          53 LEVVVDQPLDNLYSELVDRMEQ-MGEWN-------PNVKEVKILQRIGKDTL-ITHEVAAETAGNVVGPRDF--VSVRCA  121 (209)
T ss_pred             EEEEecCCHHHHHHHHHhchhh-hceec-------ccchHHHHHhhcCCCce-EEEEEeccCCCCccCccce--EEEEEE
Confidence            6789999999999888874221 11111       11111111011111122 3333222223   444432  223333


Q ss_pred             EecCCCCeEEEEEeeeeCCCCCCCe----EEEEEEEEEEeeCC--CceEEEEEEeeeeEEEeecceeeeeeeechHHHHH
Q 009787          415 VLSPDKKIFVFETVQQAHDVPFGSY----FEIHGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK  488 (525)
Q Consensus       415 ~~~~~~~~~~v~~~~~~~~vPygd~----F~v~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~  488 (525)
                      ... ++.++++......+.+|--.-    ....+.|.|++.++  ++|++...   +.++..++ +-+.++.+...+...
T Consensus       122 ~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~---~~~DpkG~-iP~~lvN~~~~~~~~  196 (209)
T cd08905         122 KRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWL---LSIDLKGW-LPKSIINQVLSQTQV  196 (209)
T ss_pred             EEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEE---EeecCCCC-CCHHHHHHHhHHhHH
Confidence            333 344566666655566654333    33668999999866  78999888   77776553 334445544444444


Q ss_pred             HHHHHHHH
Q 009787          489 KEVELMLE  496 (525)
Q Consensus       489 ~~~~~~~~  496 (525)
                      +.++.|-+
T Consensus       197 ~~~~~Lr~  204 (209)
T cd08905         197 DFANHLRQ  204 (209)
T ss_pred             HHHHHHHH
Confidence            44444433

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.69  E-value=1.6  Score=39.94  Aligned_cols=90  Identities=14%  Similarity=0.136  Sum_probs=61.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----Eeeccc----CCCCCeeccEEEEEec--C--CCcEEEE
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP----GSRYPMWGEEFNFSVD--E--LPVQIIV   78 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~----~t~nP~W~e~f~~~v~--~--~~~~L~~   78 (525)
                      ...+.|+|..+.+++........|-|+.+.+  +++..    .|+...    -...+.|||...|.+.  .  ...+|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3468899999999987765556788888864  43322    333211    1235789999998853  3  2456999


Q ss_pred             EEEEcCCCC---------CCceeEEEEEEcccC
Q 009787           79 TIYDWDIIW---------KSTVLGSVIVTVESE  102 (525)
Q Consensus        79 ~V~d~d~~~---------~dd~iG~~~i~l~~l  102 (525)
                      ++|+....+         .+..||.+.++|=+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999976543         346889888887765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=89.23  E-value=6.5  Score=36.73  Aligned_cols=146  Identities=14%  Similarity=0.225  Sum_probs=81.7

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEE---eecCCCCCCcceeEeEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFR---SLCKSPIYPRDTAMTESQH  413 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~---~~~~~~~gpk~~~~~~~Q~  413 (525)
                      -+..+++.++.++|..++.+..    .+.....    ...--+.-++ +   ..+.|.   .|.-.|+.|+..-+  .+.
T Consensus        49 k~~~~v~~~~~~~~~~~~~~~~----~Wd~~~~----~~~~le~~~~-~---~~i~~~~~~~~~~~p~~~RDfv~--~~~  114 (206)
T PF01852_consen   49 KAEGVVPASPEQVVEDLLDDRE----QWDKMCV----EAEVLEQIDE-D---TDIVYFVMKSPWPGPVSPRDFVF--LRS  114 (206)
T ss_dssp             EEEEEESSCHHHHHHHHHCGGG----HHSTTEE----EEEEEEEEET-T---EEEEEEEEE-CTTTTSSEEEEEE--EEE
T ss_pred             EEEEEEcCChHHHHHHHHhhHh----hcccchh----hheeeeecCC-C---CeEEEEEecccCCCCCCCcEEEE--EEE
Confidence            3457899999999999988533    2211111    1111111122 2   223332   23222555543222  222


Q ss_pred             EEecCCCCeEEEEEeeeeCCCCC--CCeEEE---EEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHH
Q 009787          414 AVLSPDKKIFVFETVQQAHDVPF--GSYFEI---HGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK  488 (525)
Q Consensus       414 ~~~~~~~~~~~v~~~~~~~~vPy--gd~F~v---~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~  488 (525)
                      .....++.++++......+..|-  .++-++   ...|+|++.+++.|++...   ..++..+|.. +.++..-+.....
T Consensus       115 ~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~---~~~D~~G~iP-~~~~n~~~~~~~~  190 (206)
T PF01852_consen  115 WRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYV---SQVDPKGWIP-SWLVNMVVKSQPP  190 (206)
T ss_dssp             EEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEE---EEEESSSSSH-HHHHHHHHHHHHH
T ss_pred             EEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEE---EEECCCCCCh-HHHHHHHHHHhHH
Confidence            22245666777777777777774  455554   3679999999999999998   8887766443 3334443444555


Q ss_pred             HHHHHHHHHHHH
Q 009787          489 KEVELMLETARS  500 (525)
Q Consensus       489 ~~~~~~~~~~~~  500 (525)
                      +.++.+.+.+++
T Consensus       191 ~~~~~~~~~~~~  202 (206)
T PF01852_consen  191 NFLKNLRKALKK  202 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666555554

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=88.83  E-value=9.6  Score=34.80  Aligned_cols=122  Identities=15%  Similarity=0.169  Sum_probs=65.6

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  416 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  416 (525)
                      -...++++|+++++.+++..  ....++-.     .+.....-..-+.+.......|..|  .|+.|+..-+...  ...
T Consensus        42 k~~~~i~~~~~~v~~~l~d~--~~~~~w~~-----~~~~~~vl~~~~~~~~i~~~~~~~p--~p~~~Rdfv~~~~--~~~  110 (193)
T cd00177          42 KAEGVIPASPEQVFELLMDI--DLRKKWDK-----NFEEFEVIEEIDEHTDIIYYKTKPP--WPVSPRDFVYLRR--RRK  110 (193)
T ss_pred             EEEEEECCCHHHHHHHHhCC--chhhchhh-----cceEEEEEEEeCCCeEEEEEEeeCC--CccCCccEEEEEE--EEE
Confidence            45779999999999999862  22222211     1111111111111112222233333  3466665333222  222


Q ss_pred             cCCCCeEEEEEeeeeCCCCCC-CeEEEEE---EEEEEeeCCCceEEEEEEeeeeEEEeec
Q 009787          417 SPDKKIFVFETVQQAHDVPFG-SYFEIHG---RWHLETIAENSSTIDIKVVSAGAHFKKW  472 (525)
Q Consensus       417 ~~~~~~~~v~~~~~~~~vPyg-d~F~v~~---r~~i~~~~~~~~~l~v~~~~~~V~f~K~  472 (525)
                      ..++.++++......+.+|-. ++-+...   -|+|+..++++|++...   +.++..++
T Consensus       111 ~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~---~~~D~~g~  167 (193)
T cd00177         111 LDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYV---LQVDPKGS  167 (193)
T ss_pred             cCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEE---EeeCCCCC
Confidence            224556666555544446654 5555443   49999998899999998   88877664

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=88.56  E-value=18  Score=33.88  Aligned_cols=119  Identities=13%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  416 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  416 (525)
                      -.+.+++.++++++.+++..           ++..|-.+..++.-+..+.....+-|..+...|+.++..-... .....
T Consensus        47 K~~~~v~a~~~~v~~~l~d~-----------r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r-~~~~~  114 (197)
T cd08869          47 RASTEVEAPPEEVLQRILRE-----------RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLR-TWRTD  114 (197)
T ss_pred             EEEEEeCCCHHHHHHHHHHH-----------HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEE-EEEec
Confidence            45778999999999988641           2333333333333211111223333444433344333321111 12222


Q ss_pred             cCCCCeEEEEEeeee-CCCCCCCe---EEEEEEEEEEeeCCCceEEEEEEeeeeEEEee
Q 009787          417 SPDKKIFVFETVQQA-HDVPFGSY---FEIHGRWHLETIAENSSTIDIKVVSAGAHFKK  471 (525)
Q Consensus       417 ~~~~~~~~v~~~~~~-~~vPygd~---F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K  471 (525)
                      ..++.+++....... ..+|- ++   +...+.|.|++.++++|+|...   +.++..+
T Consensus       115 ~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~~~t~vty~---~~~Dp~G  169 (197)
T cd08869         115 LPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGSGKSRVTHI---CRVDLRG  169 (197)
T ss_pred             CCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCCCCeEEEEE---EEECCCC
Confidence            334434444333322 25655 53   5556889999999899999998   8888877

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=87.39  E-value=18  Score=31.12  Aligned_cols=139  Identities=11%  Similarity=0.025  Sum_probs=71.3

Q ss_pred             eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEec
Q 009787          338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS  417 (525)
Q Consensus       338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~  417 (525)
                      .+.++++|++++|.++-+  ..-+.++.-....  +.   +.  ++ +.  ..+.....    +||........=.+...
T Consensus         5 ~~~~i~a~~e~v~~~l~D--~~~~~~w~p~~~~--~~---~~--~~-~~--~~~~~~~~----~~~~~~~~~~~~~~~~~   68 (144)
T cd05018           5 GEFRIPAPPEEVWAALND--PEVLARCIPGCES--LE---KI--GP-NE--YEATVKLK----VGPVKGTFKGKVELSDL   68 (144)
T ss_pred             eEEEecCCHHHHHHHhcC--HHHHHhhccchhh--cc---cc--CC-Ce--EEEEEEEE----EccEEEEEEEEEEEEec
Confidence            356899999999999954  3334444321111  11   11  11 11  11222221    24432222211122222


Q ss_pred             CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHHH
Q 009787          418 PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLET  497 (525)
Q Consensus       418 ~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~  497 (525)
                      .+...+.+.....    +.+.......+|.|+.. +++|+|...   ..+.+..  .++.+...-.-.-..+.+...++.
T Consensus        69 ~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~-~~gT~v~~~---~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~  138 (144)
T cd05018          69 DPPESYTITGEGK----GGAGFVKGTARVTLEPD-GGGTRLTYT---ADAQVGG--KLAQLGSRLIDGAARKLINQFFEN  138 (144)
T ss_pred             CCCcEEEEEEEEc----CCCceEEEEEEEEEEec-CCcEEEEEE---EEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHH
Confidence            2234566654332    12456789999999998 678999988   7777643  344444333333444555555555


Q ss_pred             HHHHH
Q 009787          498 ARSYI  502 (525)
Q Consensus       498 ~~~~~  502 (525)
                      +++.+
T Consensus       139 l~~~~  143 (144)
T cd05018         139 LASKI  143 (144)
T ss_pred             HHHhh
Confidence            55543

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=86.74  E-value=16  Score=31.15  Aligned_cols=103  Identities=11%  Similarity=0.118  Sum_probs=53.0

Q ss_pred             eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      .....++++|++.+|+++-.  ..-+..+..  +...+.   +.......+..|.+.+.      .|     ....+++.
T Consensus         3 i~~~~~i~a~~~~V~~~l~d--~~~~~~w~~--~~~~~~---~~~~~~~~g~~~~~~~~------~g-----~~~~~~i~   64 (140)
T cd07821           3 VTVSVTIDAPADKVWALLSD--FGGLHKWHP--AVASCE---LEGGGPGVGAVRTVTLK------DG-----GTVRERLL   64 (140)
T ss_pred             EEEEEEECCCHHHHHHHHhC--cCchhhhcc--CcceEE---eecCCCCCCeEEEEEeC------CC-----CEEEEEeh
Confidence            34567999999999999975  222233322  112222   21111112334433322      22     11233444


Q ss_pred             ecCCC-CeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEE
Q 009787          416 LSPDK-KIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIK  461 (525)
Q Consensus       416 ~~~~~-~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~  461 (525)
                      ...+. ..+.+.....  +.|+.   .....|.|+..++++|+|...
T Consensus        65 ~~~~~~~~i~~~~~~~--~~~~~---~~~~~~~~~~~~~~~t~v~~~  106 (140)
T cd07821          65 ALDDAERRYSYRIVEG--PLPVK---NYVATIRVTPEGDGGTRVTWT  106 (140)
T ss_pred             hcCccCCEEEEEecCC--CCCcc---cceEEEEEEECCCCccEEEEE
Confidence            32232 4555543321  24432   457889999988878888777

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=85.76  E-value=7.6  Score=35.81  Aligned_cols=69  Identities=13%  Similarity=0.183  Sum_probs=42.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE---EeecccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcC
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR---FSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWD   84 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~---kT~~~~~t~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d   84 (525)
                      .++|+|..+..+. .+......-||.+.+  ++...   +|....-+.+|.|||...|++.  +  ...+|.|.||+..
T Consensus        11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            4677888876432 222222334555433  33322   4555555667999999888853  3  3567999999964

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=85.22  E-value=29  Score=32.84  Aligned_cols=146  Identities=12%  Similarity=0.100  Sum_probs=73.0

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecC---CCCCCcceeEeEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCK---SPIYPRDTAMTESQH  413 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~---~~~gpk~~~~~~~Q~  413 (525)
                      -.+.++++|++.+|..+|.|- ....       .++-.+..=+.-...+...+ +.|.....   .|+.++.  ......
T Consensus        52 k~~~~v~~~~~~l~~~ll~D~-~~~~-------~W~~~~~~~~vi~~~~~~~~-i~Y~v~~p~~~~pv~~RD--fV~~r~  120 (209)
T cd08906          52 ILKAFMQCPAELVYQEVILQP-EKMV-------LWNKTVSACQVLQRVDDNTL-VSYDVAAGAAGGVVSPRD--FVNVRR  120 (209)
T ss_pred             EEEEEEcCCHHHHHHHHHhCh-hhcc-------ccCccchhhhheeeccCCcE-EEEEEccccccCCCCCCc--eEEEEE
Confidence            567899999999998777642 2111       11111111111111111222 34532211   2333333  222233


Q ss_pred             EEecCCCCeEEEEEeeeeCCCCCCC-eEEEE---EEEEEEe--eCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHH
Q 009787          414 AVLSPDKKIFVFETVQQAHDVPFGS-YFEIH---GRWHLET--IAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKY  487 (525)
Q Consensus       414 ~~~~~~~~~~~v~~~~~~~~vPygd-~F~v~---~r~~i~~--~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~  487 (525)
                      ..... +.++.+......+.+|--. +-+++   +.|.+..  .++++|++...   +.++..+ .+=+.+|.+...+..
T Consensus       121 ~~~~~-~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~---~~~Dp~G-~lP~~lvN~~~~~~~  195 (209)
T cd08906         121 IERRR-DRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWI---LNTDLKG-RLPRYLIHQSLAATM  195 (209)
T ss_pred             EEecC-CcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE---EecCCCC-CCCHHHHHHHHHHHH
Confidence            33333 3356666666656666444 44444   4555555  46778988887   7776655 334556666555555


Q ss_pred             HHHHHHHHHHH
Q 009787          488 KKEVELMLETA  498 (525)
Q Consensus       488 ~~~~~~~~~~~  498 (525)
                      .+.++.|-+.+
T Consensus       196 ~~~~~~LR~~~  206 (209)
T cd08906         196 FEFASHLRQRI  206 (209)
T ss_pred             HHHHHHHHHHH
Confidence            55555554444

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=84.85  E-value=4.7  Score=32.63  Aligned_cols=48  Identities=19%  Similarity=0.497  Sum_probs=33.5

Q ss_pred             ceeEEEeCCeEEEEecCCCceeEEEEeecccee-ccccccc--cCcEEEEE
Q 009787          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQHAFI--NPAITIIL  239 (525)
Q Consensus       192 ~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~~~~--~~~i~i~~  239 (525)
                      .|++|+|.++|+|--+.-.....+.+|+.+|.. +...+++  ++.|.+.+
T Consensus        37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~~sSpKI~l~l   87 (89)
T PF11605_consen   37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFLKSSPKIILHL   87 (89)
T ss_dssp             CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STTSSS-EEEEEE
T ss_pred             CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEccccCCCCeEEEEe
Confidence            499999999999975543334468899999999 5555554  34566665

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=84.45  E-value=11  Score=35.18  Aligned_cols=54  Identities=15%  Similarity=0.098  Sum_probs=38.6

Q ss_pred             EEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC-CC---CceeEEEEEEcc
Q 009787           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII-WK---STVLGSVIVTVE  100 (525)
Q Consensus        47 ~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~-~~---dd~iG~~~i~l~  100 (525)
                      ..+|-+...+.+|.|+|++.+.++.   ....|.|++++.... .+   ...+|-+.++|-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            4577787889999999999999864   355699999885421 11   245676666665

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=83.76  E-value=39  Score=31.83  Aligned_cols=149  Identities=10%  Similarity=0.119  Sum_probs=81.0

Q ss_pred             eeeeee-ecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          337 IYNDVF-PCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       337 ~~~~~~-~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      ....+| ++|++.|++++..  ..+..++-.......+-    +..+.  ...+.+-|.....-|+.++..-..  .+..
T Consensus        53 k~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~~~~l----e~~~~--~~~~i~y~~~~~P~P~s~RD~V~~--r~~~  122 (209)
T cd08870          53 LVRGVFEDCTPELLRDFYWD--DEYRKKWDETVIEHETL----EEDEK--SGTEIVRWVKKFPFPLSDREYVIA--RRLW  122 (209)
T ss_pred             EEEEEEcCCCHHHHHHHHcC--hhhHhhhhhheeeEEEE----EecCC--CCcEEEEEEEECCCcCCCceEEEE--EEEE
Confidence            445678 6799999999976  44444443332222211    11111  013444444443445666543222  2222


Q ss_pred             ecCCCCeEEEEEeeeeCCCCCCCeEE---EEEEEEEEee--CCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHH
Q 009787          416 LSPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETI--AENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKE  490 (525)
Q Consensus       416 ~~~~~~~~~v~~~~~~~~vPygd~F~---v~~r~~i~~~--~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~  490 (525)
                      ...++.++++.....-+.+|-.+.-+   ....|+|++.  ++++|.+.+.   +...- +..+-+.++...+..+....
T Consensus       123 ~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~---~~~dp-~G~IP~wlvN~~~~~~~~~~  198 (209)
T cd08870         123 ESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVT---YFHNP-DGGIPRELAKLAVKRGMPGF  198 (209)
T ss_pred             EcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEE---EEECC-CCCCCHHHHHHHHHhhhHHH
Confidence            23245555555555556788753333   4578999998  6778888877   55542 44444555555555566566


Q ss_pred             HHHHHHHHH
Q 009787          491 VELMLETAR  499 (525)
Q Consensus       491 ~~~~~~~~~  499 (525)
                      ++.|-+.++
T Consensus       199 l~~l~~a~~  207 (209)
T cd08870         199 LKKLENALR  207 (209)
T ss_pred             HHHHHHHHh
Confidence            665555444

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=83.15  E-value=12  Score=33.09  Aligned_cols=54  Identities=30%  Similarity=0.367  Sum_probs=39.2

Q ss_pred             EeecccCC-CCCeeccEEEEEec--C--CCcEEEEEEEEcCCCCCC----ceeEEEEEEcccC
Q 009787           49 FSSMVPGS-RYPMWGEEFNFSVD--E--LPVQIIVTIYDWDIIWKS----TVLGSVIVTVESE  102 (525)
Q Consensus        49 kT~~~~~t-~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d~~~~d----d~iG~~~i~l~~l  102 (525)
                      .|....-+ .++.|+|...|.+.  +  ....|.|+||..+.....    ..||.+.+++-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            45555444 79999999999863  3  356799999998765554    6899999998776

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=82.56  E-value=33  Score=30.03  Aligned_cols=72  Identities=10%  Similarity=-0.008  Sum_probs=43.2

Q ss_pred             CCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEee--cceeeeeeeechHHHHHHHHHHHHHH
Q 009787          420 KKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK--WCVIQFKIKTGAVNKYKKEVELMLET  497 (525)
Q Consensus       420 ~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K--~~~~K~~Ie~~~~~~~~~~~~~~~~~  497 (525)
                      ...+.+.-.  -.+.+-+....+...|.++. .+++|+|.+.   ..+....  ..+++.+|.+    -..+.++.+++.
T Consensus        70 ~~~~~~~~~--g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~---~~~~~~g~l~~l~~~~v~~----~~~~~~~~~~~~  139 (146)
T cd07823          70 ARRAVLEAT--GKDARGQGTAEATVTLRLSP-AGGGTRVTVD---TDLALTGKLAQFGRGGIGD----VAGRLLAQFAAN  139 (146)
T ss_pred             CcEEEEEEE--EecCCCcceEEEEEEEEEEe-cCCcEEEEEE---EEEEEeeEhHHhChhHHHH----HHHHHHHHHHHH
Confidence            345554422  23345556668899999998 5578999999   8887765  3455444444    334444444444


Q ss_pred             HHHH
Q 009787          498 ARSY  501 (525)
Q Consensus       498 ~~~~  501 (525)
                      +++.
T Consensus       140 l~~~  143 (146)
T cd07823         140 LEAR  143 (146)
T ss_pred             HHHH
Confidence            4444

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=81.53  E-value=23  Score=33.43  Aligned_cols=119  Identities=12%  Similarity=0.132  Sum_probs=65.6

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  416 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  416 (525)
                      -...+++.++.++..++..+ ..-|..          .+..|..-+..+.....+-|.....-|+-++.. |........
T Consensus        55 r~~~~i~a~~~~vl~~lld~-~~~Wd~----------~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~-V~~Rs~~~~  122 (204)
T cd08908          55 RTTIEVPAAPEEILKRLLKE-QHLWDV----------DLLDSKVIEILDSQTEIYQYVQNSMAPHPARDY-VVLRTWRTN  122 (204)
T ss_pred             EEEEEeCCCHHHHHHHHHhh-HHHHHH----------HhhheEeeEecCCCceEEEEEccCCCCCCCcEE-EEEEEEEEe
Confidence            45678999999999988764 211222          112222211212223334444332233333322 222122222


Q ss_pred             cCCCCeEEEEEeeeeCCCCCCCeEE---EEEEEEEEeeCCCceEEEEEEeeeeEEEee
Q 009787          417 SPDKKIFVFETVQQAHDVPFGSYFE---IHGRWHLETIAENSSTIDIKVVSAGAHFKK  471 (525)
Q Consensus       417 ~~~~~~~~v~~~~~~~~vPygd~F~---v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K  471 (525)
                      ..++.+.++..+..-..+|-. .-+   +.++|.|++.++++|+|.--   ++++..+
T Consensus       123 ~~~g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g~g~t~vtyi---~~~DPgG  176 (204)
T cd08908         123 LPKGACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCGSGKSKLTYM---CRIDLRG  176 (204)
T ss_pred             CCCCeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECCCCcEEEEEE---EEeCCCC
Confidence            344545444443666778855 444   47899999999999999998   8887765

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=80.85  E-value=20  Score=33.38  Aligned_cols=55  Identities=13%  Similarity=0.146  Sum_probs=38.7

Q ss_pred             EEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCC--CceeEEEEEEccc
Q 009787           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK--STVLGSVIVTVES  101 (525)
Q Consensus        47 ~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~--dd~iG~~~i~l~~  101 (525)
                      .++|-+...+.+|.|+|++.+.++.   ....|.|++++.....+  ...+|-+.++|-+
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            4578888889999999999999864   35569998888542211  1456666666643

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=80.76  E-value=8.5  Score=35.61  Aligned_cols=55  Identities=13%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             EEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCCCCC---ceeEEEEEEcccC
Q 009787           48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKS---TVLGSVIVTVESE  102 (525)
Q Consensus        48 ~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~~~d---d~iG~~~i~l~~l  102 (525)
                      ..|.+..++.+|.|+|+|.+.++.   ....|.|++++...-.+.   ..+|-+.++|.+-
T Consensus        61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~  121 (184)
T PF14429_consen   61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDN  121 (184)
T ss_dssp             EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-T
T ss_pred             EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeC
Confidence            457777888999999999999864   245699999997543221   5899999988873

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=80.69  E-value=38  Score=31.97  Aligned_cols=117  Identities=9%  Similarity=0.113  Sum_probs=64.3

Q ss_pred             eeeeee-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787          338 YNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  416 (525)
Q Consensus       338 ~~~~~~-~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  416 (525)
                      ...+|+ +|++.|++++.+  ..+..++-..... -+..     ..+ +  .+.+-+.....-|+.++..-+... ....
T Consensus        53 ~~~~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~-~~~~-----~~~-~--~~i~y~~~k~PwPvs~RD~V~~r~-~~~~  120 (207)
T cd08910          53 VFGVLEDCSPSLLADVYMD--LEYRKQWDQYVKE-LYEK-----ECD-G--ETVIYWEVKYPFPLSNRDYVYIRQ-RRDL  120 (207)
T ss_pred             EEEEEcCCCHHHHHHHHhC--HHHHHHHHHHHHh-heee-----cCC-C--CEEEEEEEEcCCCCCCceEEEEEE-eccc
Confidence            366888 899999999975  4443333322211 0111     111 1  233333454445677765432222 1222


Q ss_pred             cCCCC-e-EEEEEeeeeCCCCCCCeE----EEEEEEEEEeeCCCceEEEEEEeeeeEEE
Q 009787          417 SPDKK-I-FVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAHF  469 (525)
Q Consensus       417 ~~~~~-~-~~v~~~~~~~~vPygd~F----~v~~r~~i~~~~~~~~~l~v~~~~~~V~f  469 (525)
                      ..++. . +++.....-+.+|-.+-|    .....|+|++.++++|++...   +..+-
T Consensus       121 ~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~---~~~DP  176 (207)
T cd08910         121 DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMY---YFDNP  176 (207)
T ss_pred             cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEE---EEeCC
Confidence            22332 2 334444555677765544    367889999888888998888   66654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=80.07  E-value=12  Score=30.88  Aligned_cols=69  Identities=19%  Similarity=0.246  Sum_probs=44.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeEE----EeecccCCCCCeeccEEEEEec--C--CCcEEEEEEEEcC
Q 009787           16 IKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWD   84 (525)
Q Consensus        16 L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~W~e~f~~~v~--~--~~~~L~~~V~d~d   84 (525)
                      +.+.+....++........++-|+.+.+  +++..    .|..+.-...+.|||...|.+.  +  ....|.|.+|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            5566677777655443333578888865  43322    4544444556999999988753  3  3556999999864

Outlier of C2 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	525
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		7e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-05
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		7e-05
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		9e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		3e-04

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138
Query: 119 VCLHI 123
           + LHI
Sbjct: 139 IRLHI 143

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 278

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 40  AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 137

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVES--EGQ 104
            + VT++D D       LG V + + S  +GQ
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++  G    P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
           ++   I+D D+  +   +G   + +E
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLE 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	525
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	7e-26
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-25
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-21
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	7e-18
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-17
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	6e-17
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-16
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-16
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	8e-16
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	9e-16
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-15
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	8e-15
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-14
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	7e-14
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-13
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-10
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	3e-13
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	7e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	7e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-09
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	8e-13
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	9e-13
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-12
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-12
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-12
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-12
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-12
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	4e-12
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	9e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-11
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-10
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	5e-10
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-09
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-09
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	5e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	6e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	7e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-08
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	8e-08
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	5e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  101 bits (254), Expect = 7e-26
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELP 73
            +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E  
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70

Query: 74  VQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
            ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 71  TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  101 bits (252), Expect = 2e-25
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLDS------PSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD        SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138

Query: 119 VCLHIK 124
           + LHI 
Sbjct: 139 IRLHIS 144

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 88.5 bits (220), Expect = 4e-21
 Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIK 124
            + VT++D D       LG V + + S        Y L +        G + L + 
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 80.3 bits (198), Expect = 7e-18
 Identities = 13/116 (11%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF 67
                   +++ +++AK            PY  +T   + + +     +  P W +    
Sbjct: 30  GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV-----ESEGQTGAVWYTLDSPSGQ 118
            V  +  ++   ++    +    +LG+  + +      +  +   V  TL     +
Sbjct: 90  IVTPVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK 144

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES----EGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E       +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 76.2 bits (188), Expect = 6e-17
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNLI---GANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +   +       +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D     ++ +T+ D + +     LG+   TV S   G+   V +  +    ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFN-QVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           I+L +L AKNL   +     DP+A I      +   +  V  +  P W + ++  V +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-T 65

Query: 74  VQIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGA-VWYTLDSP----------SGQV 119
             I +++++   I K   +  LG V +   +  +     +  LD             GQ+
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQI 125

Query: 120 CLHIKT 125
            + ++T
Sbjct: 126 VVSLQT 131

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 73.9 bits (181), Expect = 8e-16
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 19/127 (14%)

Query: 15  LIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEKRFSSMV-PGSRYPMWGE 63
            +++ +  A  L               +   DPY  ++    +   +     +  P + E
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89

Query: 64  EFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES------EGQTGAVWYTLDSPSG 117
           EF  +V +    + + ++    +     + +  +  +          T   W  L+ P G
Sbjct: 90  EFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-PEG 147

Query: 118 QVCLHIK 124
           +V + I 
Sbjct: 148 KVFVVIT 154

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 73.2 bits (180), Expect = 9e-16
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++ + +A N+      G  DP   +    EK+ +  V     P+W E   F +  +P+
Sbjct: 8   MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 75  Q----IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS--------GQVC 120
                + + + D++ I ++ ++G+  V ++     Q+ ++ Y L S            + 
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATID 126

Query: 121 LHIK 124
           L I 
Sbjct: 127 LVIG 130

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +   +
Sbjct: 36  VVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 95

Query: 72  LPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 96  KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 141

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 70.9 bits (174), Expect = 8e-15
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSM------VPGSRYPMWGEEFNFS 68
           ++++ ++A   L   ++ G SDPY  +T                +  S  P W EE  F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAV-----WYTLDSPS---- 116
           V     +++  ++D + + +   LG V V    + +E            + L   S    
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140

Query: 117 --GQVCLHIK 124
             G + L + 
Sbjct: 141 VKGYLRLKMT 150

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 69.9 bits (171), Expect = 3e-14
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFS 68
           +++++++A   L   ++ G SDPY  +T             +  +  S  P W EE  F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS----------- 114
           V     +I+  ++D + + +   LG V V    + +E       YT              
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128

Query: 115 PSGQVCLHIK 124
             G + L + 
Sbjct: 129 VKGYLRLKMT 138

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 67.8 bits (166), Expect = 7e-14
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 20/118 (16%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII--------------TCGSEKRFSSMVPGSRYPMWGEE 64
            +L A+NL+  + NG SDP+  +                   KR +  V  S  P W + 
Sbjct: 23  HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82

Query: 65  FNF---SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
             +   S+++L  + + VT++D+D    +  LG V++ + S         WY L   +
Sbjct: 83  VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 13/144 (9%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   F V 
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV-WY-TLDSPSGQVCL-HIK 124
            + +  V + + + D+D I  + V+G   V  E+    G   W   L +P   V   H  
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWH-- 271

Query: 125 TIKLPVNASRVMNGYAGANARRRA 148
            +      S    G  G + +  +
Sbjct: 272 QLVEEKTLSSFTKGGKGLSEKENS 295

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           +L A +L   + NG SDPY  I       +K  + +   +  P++ E F FSV   EL  
Sbjct: 26  ILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQ 85

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIK 124
           + +  ++YD+D   +  ++G V++    E         +W  +     +     +
Sbjct: 86  RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGE 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 40  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
           + + + +YD+D   K  ++G   V + +   G     W  L S
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 20/111 (18%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++   +L   + NG SDP+  +          K  + +   +  P + EEF + +   +
Sbjct: 42  GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 101

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
           L    + ++++D+DI   +  +G   + + ++G+    WY  L +   ++ 
Sbjct: 102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 152

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPG 55
               +  P       + + +L AKNL   ++ G SDPY  I         +K+ +++   
Sbjct: 140 CFSLRYVPTAG---KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 196

Query: 56  SRYPMWGEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-T 111
           +  P + E F+F V  +++  VQ++VT+ D+D I K+  +G V V   S G     W   
Sbjct: 197 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 256

Query: 112 LDSPSGQVC 120
           L +P   + 
Sbjct: 257 LANPRRPIA 265

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 25  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTIKL 128
           + + + +YD+D   K  ++G   V + +   G     W  L S   +    +  I  
Sbjct: 85  KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICF 141

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 65.1 bits (159), Expect = 8e-13
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELP 73
            ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL 
Sbjct: 47  GIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG 106

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115
            + + + +YD+D   K  ++G   V + +   G     W  L S 
Sbjct: 107 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 64.7 bits (158), Expect = 9e-13
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNF---SVDELP 73
           ++ A+ L   + +GTSDP+  I        K  + +   +  P W E F F     +++ 
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            +I+ + + D+D   ++  +G V + +      Q    W  L    
Sbjct: 92  QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++ A+NL   ++ GTSDPY  +         EK+ +     +  P++ E F F +  ++
Sbjct: 21  NIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK 80

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           L    II+T+ D D + ++ V+G + ++ +S       W   +  P   V 
Sbjct: 81  LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 26  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 82

Query: 62  GEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +  + L  + +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 83  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 142

Query: 118 QVC 120
           Q+ 
Sbjct: 143 QIA 145

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F V  ++
Sbjct: 30  VILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 89

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           +  VQ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 90  IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 24  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 83

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTL 112
              +++ +T++D   + +  S  LG +++ +E+        WY L
Sbjct: 84  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 128

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           ++ AK L   + NG +DPY  +        S K  +  +  +R P+W E   +   + ++
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113
           +  + + +++ D D    +  +G    +++         + + 
Sbjct: 95  MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNIC 137

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 27  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 86

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +++ +T++D   + +  S  LG +++ +E+        WY L +  
Sbjct: 87  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHD 135

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGS 56
           ++   D Q      + L ++  K LI     GT DPY  I           + +  VP  
Sbjct: 18  LRLSIDAQDRV---LLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDC 73

Query: 57  RYPMWGEEFNFSV--DELPVQIIVTIYDWDIIWK-STVLGSVIV---TVESEGQTGAVWY 110
           R P + E F F V  ++   +++VT+++     + S ++G +     ++ +  +  + WY
Sbjct: 74  RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWY 133

Query: 111 TLDSPSGQVCLHIKT 125
            L         H+K 
Sbjct: 134 YLLGEHLGRTKHLKV 148

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 33  GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92
              + Y  +   + K  +  V GS  P W ++F F ++ L + + V +++  +IW  T++
Sbjct: 21  EKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWD-TMV 78

Query: 93  GSVIVTVE----SEGQTGAVWYTLDSPS----GQVCLHIK 124
           G+V + +     S  +    W TLDS +     ++C    
Sbjct: 79  GTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKD 118

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DEL 72
             L A      N +G  D Y   +     GS +  +++     +  W E     +  +EL
Sbjct: 31  TRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
           P   + +T+   D   + +V G + + ++        A W  L +  
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 57.0 bits (138), Expect = 5e-10
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT-----CGSEKRF-SSMVPGSRYPMWGEEFNFSV--DE 71
           ++   NL              +        +   F +  +  S   ++ E F  S+    
Sbjct: 49  IIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA 108

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS 114
           L  + + V +   D       LG   +    V   G+    WY L S
Sbjct: 109 LHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 20  LLAAKNLIGANL-NGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
           +     L  A+     S+PY             KR +S+   +  P++ E   + +    
Sbjct: 29  VKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESL 88

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
           L  + +  +++      ++T LG   + ++S    +       L    
Sbjct: 89  LAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 6   GDPQTNSAYLIKLELLAAKNLIGANLNGTSD---PYAIITCGSEKRFSSMVPGSRYPMWG 62
           G P  +      L LL    +  A  +G  +    Y  +   + +  +  V GS  P W 
Sbjct: 1   GSPGISGGGGGILSLLCVG-VKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWE 58

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV----ESEGQTGAVWYTLDSPSGQ 118
           ++F F ++ L + + V +++  +IW  T++G+V + +    +S  +    W TLDS +  
Sbjct: 59  QDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIM 117

Query: 119 VCLHIKTIKLP 129
               I   K P
Sbjct: 118 ADSEICGTKDP 128

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV---D 70
            ++  K+L+  +     +PY        T  + KR + +   +R P + E   +S    +
Sbjct: 25  MVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83

Query: 71  ELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            L  + + +++   + + ++  LG + + ++     +    WY L + +
Sbjct: 84  TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT 132

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            + A +NLI  + +G SDPY  +        S +R + +   +  P++ + F+FSV   E
Sbjct: 29  VVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG 117
           +  + + V + +          +LG V+V + SE   +    WY L   SG
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANL-NGTSDPYAIIT-----CGSEKRFSSMVPG 55
           +Q   + +      +++E++ A++L        T  PY  +          K+ + +   
Sbjct: 21  IQIGMEDKKGQ---LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK 77

Query: 56  SRYPMWGEEFNFSVDELPVQIIVTIY-DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112
           +  P++ +   F        + V ++ D+  +     +G   + +E          WY L
Sbjct: 78  TLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

Query: 113 DSPSGQV 119
             PS  V
Sbjct: 138 FPPSSLV 144

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 18/116 (15%)

Query: 20  LLAAKNLIGAN-------LNGTSDPYA---IITCGSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ A++L               S+PY    ++      + + +   ++ P++ E + F +
Sbjct: 32  VIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEI 91

Query: 70  --DELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL---DSPSG 117
              E   + + +T+ D+D   +  V+G V V +      + G  W  L      SG
Sbjct: 92  PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSSG 147

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 20  LLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV---DEL 72
           +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F      ++
Sbjct: 28  IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87

Query: 73  PVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDSP 115
               +  TI  +D   +  ++G V++    +E       +   + S 
Sbjct: 88  QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 53.8 bits (128), Expect = 8e-08
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 35  SDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ--IIVTIYDWDIIWKSTVL 92
           +D Y  +  G ++  + +V  +  P W ++ +F    L     + V ++D D  W   +L
Sbjct: 414 TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLL 473

Query: 93  GSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLP 129
           GS   +  S      V   L+   G+V        LP
Sbjct: 474 GSCDRSPHSGFHE--VTCELN--HGRVKFSYHAKCLP 506

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 51.5 bits (122), Expect = 5e-07
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 14  YLIKLELLAAKNLI---GANLNGTSDPYAII---TCGSEKRFSSMVPGSRYPMWGEEFNF 67
           +   + +L A  +      ++  T DPY  +   T    ++ +        P+W E F F
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 68  SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
            +D     ++ +T+ D +       LG+   TV S                   
Sbjct: 78  ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEM 130

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 30  NLNGTSDPYAIITCGSEKRFSSMVPGSRYP-MWGEEFNFSVDELPVQ---IIVTIYDWDI 85
            L G +D  A +T   +  +S ++        + E F + V     +   + + I+++  
Sbjct: 32  ELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91

Query: 86  IWKSTVLGSVIV 97
           ++ + ++G+  +
Sbjct: 92  VFSNKLIGTFRM 103

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 44.2 bits (103), Expect = 9e-05
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 15/113 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF----SSMVPGSRYPMWGEEFNF---- 67
           +KL ++ A+ L           Y  +                       WGE F F    
Sbjct: 13  LKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQ 118
           +V  L + +           K+  +G V V V   +       WY +  P+G 
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 92/302 (30%)

Query: 25  NLIGANL---NGTSDPYAIITCGSEKRFSSMVPGS-----------RYPMWGEEFN-FSV 69
           ++I  ++     T D +  + C    + ++++  S            +    +  + F  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC---DKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP 383

Query: 70  D-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-------EGQTGAVWYTLDSPSGQVCL 121
              +P  ++       +IW   +   V+V V         E Q      ++  PS  + L
Sbjct: 384 SAHIPTILLS------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLEL 435

Query: 122 HIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV----------HQKPGPLQTIFNL 171
            +K          +++ Y   N  +    D   P  +          H K         L
Sbjct: 436 KVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 172 LPDEFVELSYSCVIERSFLYHG----------------RMYVSAWHICFHSNAFSRQMKV 215
               F++  +   +E+   +                  + Y    +IC +   + R +  
Sbjct: 493 FRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNA 547

Query: 216 IIPIGDIDERSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQL 275
           I+   D   + +   I    T +LR+         L + D  + +          A +Q+
Sbjct: 548 IL---DFLPKIEENLICSKYTDLLRIA--------LMAEDEAI-F--------EEAHKQV 587

Query: 276 QR 277
           QR
Sbjct: 588 QR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	525
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.83
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.83
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.82
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.8
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.8
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.79
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.79
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.78
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.77
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.77
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.74
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.73
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.72
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.72
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.72
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.72
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.72
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.72
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.71
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.71
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.7
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.7
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.7
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.69
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.69
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.69
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.69
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.68
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.68
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.68
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.67
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.67
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.67
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.66
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.62
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.6
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.59
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.58
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.57
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.5
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.45
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.44
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.43
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.4
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.28
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.23
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.04
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.02
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.99
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.96
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.95
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	92.91
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	91.97
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	91.86
2pcs_A	162	Conserved protein; structural genomics, unknown fu	91.18
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	90.12
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	89.44
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	88.77
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	88.73
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	88.49
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	88.45
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	88.18
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	87.92
3qsz_A	189	STAR-related lipid transfer protein; structural ge	87.78
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	87.76
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	87.16
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	86.44
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	84.83
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	83.25
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	81.02

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.83  E-value=1.3e-19  Score=161.95  Aligned_cols=120  Identities=29%  Similarity=0.491  Sum_probs=105.2

Q ss_pred             CCCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCC
Q 009787            7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII   86 (525)
Q Consensus         7 ~~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~   86 (525)
                      .......|.|.|+|++|++|++++..|.+||||++.++...++|+++.+++||.|||+|.|.+......|.|+|||+|..
T Consensus        10 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~   89 (148)
T 3kwu_A           10 DGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDD   89 (148)
T ss_dssp             -----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCS
T ss_pred             ccccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCC
Confidence            34556689999999999999999999999999999999999999999999999999999999987778899999999986


Q ss_pred             -----------CCCceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEEE
Q 009787           87 -----------WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (525)
Q Consensus        87 -----------~~dd~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~l~i~~~  126 (525)
                                 ++|++||++.+++..+....+.|++|.+      ..|+|++.+.++
T Consensus        90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           90 IKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccccccccCCCCccEEEEEEEHHHCcCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                       7899999999999999777789999974      237888877765

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=5.6e-20  Score=161.16  Aligned_cols=120  Identities=23%  Similarity=0.412  Sum_probs=108.3

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009787            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (525)
Q Consensus         8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~   87 (525)
                      ......|.|.|+|++|++|++++..|.+||||++.++.+.++|+++++++||.|||+|.|.+.+....|.|+|||+|..+
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCC
Confidence            44567899999999999999999999999999999999999999999999999999999999887788999999999998


Q ss_pred             CCceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEEEe
Q 009787           88 KSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIK  127 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~l~i~~~~  127 (525)
                      +|++||++.+++.++......|++|..      ..|++++.+++.+
T Consensus        87 ~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEEECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCeeEEEEEEHHHccCCCceEEEeecCCCCCccceEEEEEEEEEe
Confidence            999999999999999666679999974      3488888887764

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.82  E-value=9.4e-20  Score=163.68  Aligned_cols=114  Identities=15%  Similarity=0.222  Sum_probs=100.9

Q ss_pred             CCceEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~----------~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~   79 (525)
                      ...|.|+|+|++|++|+++|.          .|.+||||++.+++.. .+|+++++++||.|||+|.|.+.+ ...|.|+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~  104 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA  104 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence            568899999999999999883          3679999999998876 589999999999999999999875 5689999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccC--C----CcccEEEEccCCCceEEEEEEEE
Q 009787           80 IYDWDIIWKSTVLGSVIVTVESE--G----QTGAVWYTLDSPSGQVCLHIKTI  126 (525)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l--~----~~~~~w~~L~~~~G~i~l~i~~~  126 (525)
                      |||+|.+++|++||.+.|++.++  +    ...+.|++|.+ .|++++.+++.
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-~G~i~l~l~~~  156 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-EGKVFVVITLT  156 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-SCEEEEEEEEC
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-CcEEEEEEEEE
Confidence            99999999999999999999988  2    44689999986 89999888874

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.80  E-value=4.6e-19  Score=155.85  Aligned_cols=121  Identities=21%  Similarity=0.369  Sum_probs=105.5

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeccc-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCC
Q 009787            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDII   86 (525)
Q Consensus         8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~   86 (525)
                      .+....|.|.|+|++|++|+.++..|.+||||++.++...++|++++ +++||.|||+|.|.+.+....|.|+|||++.+
T Consensus         4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence            34567899999999999999999999999999999999899999998 89999999999999987778899999999999


Q ss_pred             CCCceeEEEEEEcccC---CCcccEEEEccC---CCceEEEEEEEEec
Q 009787           87 WKSTVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKL  128 (525)
Q Consensus        87 ~~dd~iG~~~i~l~~l---~~~~~~w~~L~~---~~G~i~l~i~~~~~  128 (525)
                      ++|++||.+.+++.++   +.....|++|..   ..|++++.+.+.+.
T Consensus        84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence            9999999999999988   334578999963   23667777766654

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=1.5e-18  Score=153.30  Aligned_cols=118  Identities=19%  Similarity=0.332  Sum_probs=101.4

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEEEEcCC
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI   85 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V~d~d~   85 (525)
                      ....|.|.|+|++|++|+.++. |.+||||+++++.+.++|+++++++||+|||+|.|.+..    ....|.|+|||+|.
T Consensus         3 s~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            3 SGSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET   81 (140)
T ss_dssp             SCBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred             CCCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence            3568899999999999999998 999999999999999999999999999999999999864    35779999999999


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEE---ccCCC-----ceEEEEEEEEec
Q 009787           86 IWKSTVLGSVIVTVESE--GQTGAVWYT---LDSPS-----GQVCLHIKTIKL  128 (525)
Q Consensus        86 ~~~dd~iG~~~i~l~~l--~~~~~~w~~---L~~~~-----G~i~l~i~~~~~  128 (525)
                      .++|++||.+.+++.++  +...+.|+.   |....     |++++.+.+...
T Consensus        82 ~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred             CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence            99999999999999998  455578988   54422     666666666643

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.79  E-value=4.2e-19  Score=156.26  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=99.9

Q ss_pred             CceEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEE
Q 009787           12 SAYLIKLELLAAKNLIGANLNGT-----------SDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~-----------~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~   79 (525)
                      ..|.|.|+|++|++|+++|..+.           +||||++.++... .+|+++.+++||.|||+|.|.+.+. ..|.|+
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~   82 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence            46899999999999999885544           9999999998765 5899999999999999999998764 889999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCC----cccEEEEccCCCceEEEEEEEEe
Q 009787           80 IYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSPSGQVCLHIKTIK  127 (525)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~~----~~~~w~~L~~~~G~i~l~i~~~~  127 (525)
                      |||+|..++|++||.+.+++.++..    ..+.|++|.+ .|++++.+.+..
T Consensus        83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~i~l~l~~~~  133 (136)
T 1gmi_A           83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSG  133 (136)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             EEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-CeEEEEEEEEEe
Confidence            9999999999999999999998822    2378999986 799999988864

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.79  E-value=1.7e-18  Score=155.46  Aligned_cols=118  Identities=19%  Similarity=0.335  Sum_probs=95.3

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEE
Q 009787            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (525)
Q Consensus         9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d   82 (525)
                      .....+.|.|+|++|++|+.++..|.+||||++.+..      ..++|+++++++||.|||+|.|.+......|.|+|||
T Consensus        15 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d   94 (153)
T 3b7y_A           15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFD   94 (153)
T ss_dssp             CCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEE
Confidence            4567899999999999999999899999999999863      5679999999999999999999998777789999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC--Ccc------cEEEEccCC------CceEEEEEEEE
Q 009787           83 WDIIWKSTVLGSVIVTVESEG--QTG------AVWYTLDSP------SGQVCLHIKTI  126 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~--~~~------~~w~~L~~~------~G~i~l~i~~~  126 (525)
                      ++..++|++||++.+++.++.  ...      ..|++|.++      .|+|++++.+.
T Consensus        95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~  152 (153)
T 3b7y_A           95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  152 (153)
T ss_dssp             CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence            999999999999999999982  221      489999653      37777777664

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.78  E-value=3.3e-18  Score=157.34  Aligned_cols=120  Identities=20%  Similarity=0.315  Sum_probs=96.5

Q ss_pred             CCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEE
Q 009787            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (525)
Q Consensus         9 ~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d   82 (525)
                      .+...|.|.|+|++|++|+.++..|.+||||++.+..      ..++|+++++++||.|||+|.|.+......|.|+|||
T Consensus         3 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d   82 (176)
T 3m7f_B            3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFD   82 (176)
T ss_dssp             CCTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEE
Confidence            4567899999999999999999999999999999864      5679999999999999999999998767789999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCc-cc-------EEEEccCC------CceEEEEEEEEec
Q 009787           83 WDIIWKSTVLGSVIVTVESEGQT-GA-------VWYTLDSP------SGQVCLHIKTIKL  128 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~-~~-------~w~~L~~~------~G~i~l~i~~~~~  128 (525)
                      ++.+++|++||.+.++|..+... ..       .||+|.++      .|.|.+.+.+.+.
T Consensus        83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            99999999999999999998322 11       79999752      4778888887755

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.77  E-value=2.6e-18  Score=148.87  Aligned_cols=114  Identities=20%  Similarity=0.357  Sum_probs=97.8

Q ss_pred             CceEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eEEEeecccCCCCCeeccEEEEEec-CCCcEEEEEEEEcC
Q 009787           12 SAYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWD   84 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~---d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~W~e~f~~~v~-~~~~~L~~~V~d~d   84 (525)
                      +.|.|.|+|++|++|+++   +..|.+||||++.++.   ..++|+++++++||.|||+|.|.+. .....|.|+|||+|
T Consensus         1 S~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d   80 (126)
T 1rlw_A            1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CCcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence            368999999999999984   5678999999999974   6789999999999999999999985 44677999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCCCceEEEEEEEEe
Q 009787           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTIK  127 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~G~i~l~i~~~~  127 (525)
                      .. +|++||.+.+++.++  +.....|++|.+ .|++.++++++.
T Consensus        81 ~~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~-~~~g~i~~~le~  123 (126)
T 1rlw_A           81 YV-MDETLGTATFTVSSMKVGEKKEVPFIFNQ-VTEMVLEMSLEV  123 (126)
T ss_dssp             SS-CCEEEEEEEEEGGGSCTTCEEEEEEEETT-TEEEEEEEEEEC
T ss_pred             CC-CCceeEEEEEEHHHccCCCcEEEEEEcCC-CceEEEEEEEEe
Confidence            87 489999999999998  555678999986 566666666654

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.77  E-value=6.1e-18  Score=147.91  Aligned_cols=112  Identities=23%  Similarity=0.375  Sum_probs=95.9

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCC-
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK-   88 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~-   88 (525)
                      ....|+|+|++|++|+++|..|.+||||++.++.  ..++|+++++++||.|||+|.|.+... ..|.|+|||+|..++ 
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKK   81 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSS
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCC
Confidence            4568999999999999999999999999999974  778999999999999999999998764 349999999998876 


Q ss_pred             --CceeEEEEEEcccC---CCcccEEEEccCC--------CceEEEEEE
Q 009787           89 --STVLGSVIVTVESE---GQTGAVWYTLDSP--------SGQVCLHIK  124 (525)
Q Consensus        89 --dd~iG~~~i~l~~l---~~~~~~w~~L~~~--------~G~i~l~i~  124 (525)
                        |++||++.+++..+   ......|++|..+        .|+|.+++.
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~  130 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ  130 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence              89999999998877   4455789999764        466666654

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.74  E-value=1.8e-17  Score=145.35  Aligned_cols=103  Identities=15%  Similarity=0.310  Sum_probs=90.6

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V~d   82 (525)
                      ..+.|.|+|++|++|+. +..|.+||||++++     ....++|+++++++||+|||+|.|. +..   ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            46789999999999997 77899999999998     3567799999999999999999999 753   35789999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      +|.++++++||++.+++.++  +...+.||+|.++
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  131 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA  131 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence            99999999999999999999  4567899999863

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.73  E-value=7.6e-18  Score=151.50  Aligned_cols=104  Identities=14%  Similarity=0.122  Sum_probs=91.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~   81 (525)
                      +..+.|.|+|++|++|++++..|.+||||++++..      ..++|+++++++||+|||+|.|.+...   ...|.|+||
T Consensus        40 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~  119 (155)
T 2z0u_A           40 EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVC  119 (155)
T ss_dssp             TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEE
Confidence            35678999999999999999999999999999854      268999999999999999999997642   467999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC---CCcccEEEEccC
Q 009787           82 DWDIIWKSTVLGSVIVTVESE---GQTGAVWYTLDS  114 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l---~~~~~~w~~L~~  114 (525)
                      |+|..+++++||++.+++.++   +.....||+|.+
T Consensus       120 d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          120 TTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             EECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            999999999999999999998   356678999864

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.72  E-value=4.2e-17  Score=149.34  Aligned_cols=117  Identities=12%  Similarity=0.234  Sum_probs=95.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd   90 (525)
                      ...+.|.|+|++|++|+..+..+.+||||++.+++..++|+++++++||+|||+|.|.+.+ ...|.|+|||+|.+++|+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCE
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCc
Confidence            4578899999999999944445569999999999988999999999999999999999864 788999999999999999


Q ss_pred             eeEEEEEEcccC---CC----cccEEEEccCC------CceEEEEEEEEec
Q 009787           91 VLGSVIVTVESE---GQ----TGAVWYTLDSP------SGQVCLHIKTIKL  128 (525)
Q Consensus        91 ~iG~~~i~l~~l---~~----~~~~w~~L~~~------~G~i~l~i~~~~~  128 (525)
                      +||.+.+++.++   ..    ....|++|..+      .|++.+.+.+...
T Consensus       112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            999999999987   11    12569999753      2556555555543

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.72  E-value=1.6e-17  Score=147.30  Aligned_cols=104  Identities=23%  Similarity=0.413  Sum_probs=93.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d   84 (525)
                      +..+.|.|+|++|++|+.++..+.+||||++.+   +...++|+++++++||.|||+|.|.+..   ....|.|+|||+|
T Consensus        31 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            467899999999999999998999999999998   4567899999999999999999999753   2478999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      .+++|++||++.+++..+  +...+.|++|.+
T Consensus       111 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            999999999999999998  456789999976

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=3.1e-17  Score=147.12  Aligned_cols=104  Identities=23%  Similarity=0.413  Sum_probs=92.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d   84 (525)
                      +..+.|.|+|++|++|+.++..+.+||||++.+   +...++|+++++++||.|||+|.|.+..   ....|.|+|||+|
T Consensus        39 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  118 (152)
T 1rsy_A           39 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  118 (152)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECC
Confidence            456899999999999999999999999999998   3557799999999999999999998753   2578999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      .++++++||++.+++.++  +...+.|++|.+
T Consensus       119 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          119 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            999999999999999998  556689999975

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=2.8e-17  Score=142.91  Aligned_cols=103  Identities=22%  Similarity=0.395  Sum_probs=86.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V~   81 (525)
                      +..+.|.|+|++|++|++++..|.+||||++.+     +...++|+++++++||.|||+|.|.+..    ....|.|+||
T Consensus        15 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            456899999999999999999999999999998     4567899999999999999999999522    2467999999


Q ss_pred             EcCCCCC--CceeEEEEEEcccC-CCcccEEEEcc
Q 009787           82 DWDIIWK--STVLGSVIVTVESE-GQTGAVWYTLD  113 (525)
Q Consensus        82 d~d~~~~--dd~iG~~~i~l~~l-~~~~~~w~~L~  113 (525)
                      |++..++  +++||.+.+++.++ ....+.||+|+
T Consensus        95 d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~Lq  129 (129)
T 2bwq_A           95 DQARVREEESEFLGEILIELETALLDDEPHWYKLQ  129 (129)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ECCcCcCcCCceeEEEEEEccccCCCcCCccEECc
Confidence            9999887  99999999999998 44478899984

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=4.4e-17  Score=144.15  Aligned_cols=105  Identities=20%  Similarity=0.350  Sum_probs=92.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecC----CCcEEEEEEEEc
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW   83 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~~L~~~V~d~   83 (525)
                      +..+.|.|+|++|++|+.++..|.+||||++++.   ...++|+++++++||.|||+|.|.+..    ....|.|+|||+
T Consensus        23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            4578899999999999999999999999999983   457899999999999999999998532    257799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      +.++++++||++.+++.++  +...+.|++|.++
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            9999999999999999998  4557789999863

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.72  E-value=1.4e-17  Score=148.71  Aligned_cols=106  Identities=15%  Similarity=0.214  Sum_probs=92.6

Q ss_pred             CCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~   81 (525)
                      +..+.|.|+|++|++|++++ ..|.+||||++.+.     ...++|+++++++||.|||+|.|.+...   ...|.|+||
T Consensus        20 ~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~   99 (148)
T 3fdw_A           20 QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVW   99 (148)
T ss_dssp             TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEE
Confidence            45789999999999999988 58899999999985     3477999999999999999999998653   346999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 009787           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (525)
                      |+|.++++++||++.+++.++  +...+.|++|.++.
T Consensus       100 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          100 HHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             EECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             ECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            999999999999999999998  45567999998854

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=4.1e-17  Score=145.80  Aligned_cols=102  Identities=27%  Similarity=0.471  Sum_probs=91.4

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC--CcEEEEEEEEcCC
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDI   85 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~--~~~L~~~V~d~d~   85 (525)
                      .+.|.|+|++|++|+.++..+.+||||++++.     ...++|+++++++||.|||+|.|.+...  ...|.|+|||+|.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            46799999999999999999999999999986     4578999999999999999999998653  4679999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009787           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (525)
Q Consensus        86 ~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~  114 (525)
                      .+++++||++.+++.++ ....+.||+|.+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~  139 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  139 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCCEEEEEEEEHHHhCcCccCCeEEccC
Confidence            99999999999999998 445788999986

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=1.7e-17  Score=146.86  Aligned_cols=104  Identities=25%  Similarity=0.447  Sum_probs=91.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------EEEeecccCCCCCeeccEEEEE-ecC---CCc
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE--------------KRFSSMVPGSRYPMWGEEFNFS-VDE---LPV   74 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~--------------~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~   74 (525)
                      .|.|.|+|++|++|++++..|.+||||++++...              .++|+++++++||.|||+|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            4689999999999999999999999999999753              3589999999999999999997 532   356


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 009787           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (525)
Q Consensus        75 ~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (525)
                      .|.|+|||+|.++++++||.+.+++..+  ....+.||+|.+..
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            8999999999999999999999999988  45567999998754

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.70  E-value=5.2e-17  Score=148.66  Aligned_cols=104  Identities=16%  Similarity=0.279  Sum_probs=91.5

Q ss_pred             CceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEE-EcC
Q 009787           12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWD   84 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~-d~d   84 (525)
                      ..+.|.|+|++|++|+++|. .|.+||||++.+..     ..++|+++++++||+|||+|.|.+......|.|+|| |+|
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            36789999999999999995 79999999999753     367899999999999999999998766778999999 999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      .+++|++||++.+++.++  +...+.||+|.++
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            999999999999999998  5667899999874

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.70  E-value=8e-17  Score=144.59  Aligned_cols=104  Identities=26%  Similarity=0.416  Sum_probs=91.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEe--cCCCcEEEEEEEEc
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQIIVTIYDW   83 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v--~~~~~~L~~~V~d~   83 (525)
                      +..+.|.|+|++|++|++++ .|.+||||++.+.     ...++|+++++++||.|||+|.|.+  .+....|.|+|||+
T Consensus        24 ~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  102 (153)
T 3fbk_A           24 AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNR  102 (153)
T ss_dssp             ESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeC
Confidence            46789999999999999999 6999999999983     3567999999999999999999998  44556799999999


Q ss_pred             CCCCC-CceeEEEEEEcccCC---CcccEEEEccCC
Q 009787           84 DIIWK-STVLGSVIVTVESEG---QTGAVWYTLDSP  115 (525)
Q Consensus        84 d~~~~-dd~iG~~~i~l~~l~---~~~~~w~~L~~~  115 (525)
                      |.+++ |++||++.+++.++.   .....|++|.++
T Consensus       103 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          103 ASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             CSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             CCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            99877 999999999999983   566789999874

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.69  E-value=1.6e-16  Score=139.97  Aligned_cols=102  Identities=16%  Similarity=0.212  Sum_probs=88.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C-eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S-EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~-~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d~   83 (525)
                      ...+.|.|+|++|+   +++..|.+||||++.+.   . ..++|+++++++||+|||+|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           23 CQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            35678999999999   46778999999999983   2 356899999999999999999998642   46799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      |.+++|++||++.+++.++  ......|++|.+.
T Consensus       100 d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A          100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence            9999999999999999998  5667899999863

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.69  E-value=5.6e-17  Score=143.23  Aligned_cols=105  Identities=22%  Similarity=0.399  Sum_probs=91.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEEe-cC---CCcEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIY   81 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~v-~~---~~~~L~~~V~   81 (525)
                      +..+.|.|+|++|++|+.++..|.+||||++.+     ....++|+++++++||+|||+|.|.+ ..   ....|.|+||
T Consensus        18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            446889999999999999999999999999998     35667999999999999999999994 32   2467999999


Q ss_pred             EcCCCCC--CceeEEEEEEcccC-CCcccEEEEccCC
Q 009787           82 DWDIIWK--STVLGSVIVTVESE-GQTGAVWYTLDSP  115 (525)
Q Consensus        82 d~d~~~~--dd~iG~~~i~l~~l-~~~~~~w~~L~~~  115 (525)
                      |++..++  +++||.+.+++.++ ......||+|.++
T Consensus        98 d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~~  134 (141)
T 1v27_A           98 DQARVREEESEFLGEILIELETALLDDEPHWYKLQTH  134 (141)
T ss_dssp             EBCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBCC
T ss_pred             ECCCCcCCCCceEEEEEEEccccCCCCCCceEECccc
Confidence            9999887  99999999999998 4446799999873

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.69  E-value=1.6e-16  Score=140.03  Aligned_cols=105  Identities=18%  Similarity=0.223  Sum_probs=89.9

Q ss_pred             CCceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|++|++++.. +.+||||++.+.   ...++|+++++++||+|||+|.|. +..   ....|.|+|||
T Consensus        19 ~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d   98 (138)
T 1ugk_A           19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEE
Confidence            4577899999999999999985 899999999985   367899999999999999999996 643   23579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC---CcccEEEEccCC
Q 009787           83 WDIIWKSTVLGSVIVTVESEG---QTGAVWYTLDSP  115 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~---~~~~~w~~L~~~  115 (525)
                      +|.+++|++||++.+++.++.   .....|++|.++
T Consensus        99 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            999999999999999999982   233567998764

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.69  E-value=1.2e-16  Score=141.48  Aligned_cols=104  Identities=18%  Similarity=0.316  Sum_probs=90.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEE-ecCC---CcEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VDEL---PVQIIVTIY   81 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~-v~~~---~~~L~~~V~   81 (525)
                      +..+.|.|+|++|++|+.++..|.+||||++.+..     ..++|+++++++||.|||+|.|. +...   ...|.|+||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            46789999999999999999999999999999864     67899999999999999999998 5432   367999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      |++.++++++||++.+++.++  +.....|++|..
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            999999999999999999999  455567787764

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=8e-17  Score=142.59  Aligned_cols=106  Identities=26%  Similarity=0.399  Sum_probs=90.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|++|++++..| +||||++++.     ...++|+++++++||+|||+|.|.+..   ....|.|+|||
T Consensus        21 ~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d   99 (142)
T 2dmg_A           21 SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKN   99 (142)
T ss_dssp             TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence            45678999999999999999888 9999999983     256799999999999999999999753   23579999999


Q ss_pred             cCCCCC--CceeEEEEEEcccC--CCcccEEEEccCCCc
Q 009787           83 WDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG  117 (525)
Q Consensus        83 ~d~~~~--dd~iG~~~i~l~~l--~~~~~~w~~L~~~~G  117 (525)
                      ++.+++  +++||++.+++..+  ......|++|.++.+
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~  138 (142)
T 2dmg_A          100 SGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG  138 (142)
T ss_dssp             CCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred             CCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence            998764  57999999999988  456788999987543

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.68  E-value=2.4e-17  Score=145.02  Aligned_cols=107  Identities=25%  Similarity=0.386  Sum_probs=91.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCCC---cEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP---VQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~~---~~L~~~V~d   82 (525)
                      +..+.|.|+|++|++|+.++..|.+||||++++..     ..++|+++++++||.|||+|.|.+....   ..|.|+|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            45789999999999999999999999999999853     4668999999999999999999986533   579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (525)
                      +|..++|++||++.+++..+.....+|++|...+|
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~  127 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPR  127 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTT
T ss_pred             CCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCC
Confidence            99999999999999999987555566776654333

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.68  E-value=3.8e-17  Score=148.72  Aligned_cols=104  Identities=17%  Similarity=0.333  Sum_probs=90.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|++|+.++..|.+||||++++..     ..++|+++++++||+|||+|.|.+...   ...|.|+|||
T Consensus        34 ~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  113 (166)
T 2cm5_A           34 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD  113 (166)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEE
Confidence            35678999999999999999999999999999864     577999999999999999999998542   4579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009787           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~  114 (525)
                      +|.++++++||.+.+++..++.....|++|..
T Consensus       114 ~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~  145 (166)
T 2cm5_A          114 YDIGKSNDYIGGCQLGISAKGERLKHWYECLK  145 (166)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEeEEEecccCCchhHHHHHHHh
Confidence            99999999999999999987555556766654

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.67  E-value=4.6e-16  Score=140.49  Aligned_cols=104  Identities=33%  Similarity=0.471  Sum_probs=89.1

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|++|+.++..|.+||||++++..     ..++|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        22 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            45789999999999999999999999999999852     356899999999999999999998543   3569999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 009787           83 WDIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--------------~~~~~~w~~L~~  114 (525)
                      +|.++++++||.+.+++..+              ......|++|.+
T Consensus       102 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A          102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            99999999999999999854              234567888765

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1.4e-16  Score=141.97  Aligned_cols=105  Identities=18%  Similarity=0.308  Sum_probs=89.2

Q ss_pred             CCceEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecC---CCcEEE
Q 009787           11 NSAYLIKLELLAAKNLIGA-NL------NGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQII   77 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~-d~------~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~   77 (525)
                      +..+.|.|+|++|++|+.+ +.      .+.+||||++.+.   ...++|+++++++||+|||+|.|.+..   ....|.
T Consensus        23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence            4567899999999999984 43      3589999999985   356799999999999999999999754   235799


Q ss_pred             EEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           78 VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        78 ~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      |+|||+|.++++++||++.+++.++  ......|+.|.++
T Consensus       103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             EEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            9999999999999999999999998  3445689999874

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.67  E-value=6.9e-17  Score=144.94  Aligned_cols=104  Identities=18%  Similarity=0.369  Sum_probs=84.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---EEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSE---KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~~---~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|++|+.++..|.+||||++.+  +..   .++|+++++++||+|||+|.|.+...   ...|.|+|||
T Consensus        27 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           27 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEe
Confidence            456789999999999999999999999999998  433   56899999999999999999998653   3579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 009787           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~  114 (525)
                      +|.++++++||++.+++.........|++|..
T Consensus       107 ~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~  138 (153)
T 1w15_A          107 SERGSRNEVIGRLVLGATAEGSGGGHWKEICD  138 (153)
T ss_dssp             CCTTSCCEEEEEEEESTTCCSHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEEECCCCCchHHHHHHHHHh
Confidence            99999999999999999986555566777654

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.66  E-value=1.5e-15  Score=150.32  Aligned_cols=116  Identities=22%  Similarity=0.452  Sum_probs=99.3

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d   84 (525)
                      +..+.|.|+|++|++|++++..|.+||||++.++   ...++|+++++++||.|||+|.|.+..   ....|.|+|||+|
T Consensus        16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            4578999999999999999999999999999985   346789999999999999999999754   2468999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEEE
Q 009787           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTI  126 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~l~i~~~  126 (525)
                      .+++|++||++.+++..+  +...+.|++|.+.       .|++.+.+.+.
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~  146 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYV  146 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEE
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEec
Confidence            999999999999999998  4556789999652       36666666554

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.62  E-value=3.4e-15  Score=148.76  Aligned_cols=116  Identities=21%  Similarity=0.358  Sum_probs=96.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEEcC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDWD   84 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d~d   84 (525)
                      ...+.|.|+|++|++|+++|..|.+||||++.+   +...++|+++++++||.|||+|.|.+...   ...|.|+|||+|
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            457899999999999999999999999999998   46678999999999999999999998532   357999999999


Q ss_pred             CCCCCceeEEEEEE-cccC---CCcccEEEEccCC------CceEEEEEEEE
Q 009787           85 IIWKSTVLGSVIVT-VESE---GQTGAVWYTLDSP------SGQVCLHIKTI  126 (525)
Q Consensus        85 ~~~~dd~iG~~~i~-l~~l---~~~~~~w~~L~~~------~G~i~l~i~~~  126 (525)
                      .+++|++||++.++ +.++   ......|++|...      .|++.+.+.+.
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~  148 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYL  148 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEE
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEec
Confidence            99999999999995 3333   4455789999652      36676666554

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.60  E-value=7.8e-15  Score=156.38  Aligned_cols=111  Identities=21%  Similarity=0.302  Sum_probs=97.3

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEec--CCCcEEEEEEEEcCCCCCCc
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIWKST   90 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~--~~~~~L~~~V~d~d~~~~dd   90 (525)
                      .+.|.|+|++|++|+. |..|.+||||++.+++..++|+++++++||+|||+|.|.+.  .....|.|+|||+|..++||
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD  471 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDD  471 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCE
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            6789999999999998 99999999999999998999999999999999999999853  35778999999999999999


Q ss_pred             eeEEEEEEcccCCCcccEEEEccCCCceEEEEEEEEec
Q 009787           91 VLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKL  128 (525)
Q Consensus        91 ~iG~~~i~l~~l~~~~~~w~~L~~~~G~i~l~i~~~~~  128 (525)
                      +||.+.++|..  ...+.|+.|.  +|.+.+.+.+.-.
T Consensus       472 ~LG~~~~~L~~--g~~~~~~~l~--~G~l~~~~~~~c~  505 (540)
T 3nsj_A          472 LLGSCDRSPHS--GFHEVTCELN--HGRVKFSYHAKCL  505 (540)
T ss_dssp             EEEEEEECCCS--EEEEEEEECS--SSEEEEEEEEEEC
T ss_pred             EEEEEEEEeeC--CcEEEEEEcC--CeEEEEEEEEEEC
Confidence            99999999884  2346788876  6888888776643

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.59  E-value=8.1e-15  Score=157.16  Aligned_cols=117  Identities=21%  Similarity=0.338  Sum_probs=102.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCCCCCC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS   89 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~~~~d   89 (525)
                      ...|.|.|+|++|++|+++|..|.+||||++.++...++|+++++++||.|||+|.|.+... ...|.|+|||+|..++|
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~  463 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD  463 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence            45689999999999999999999999999999999999999999999999999999998654 46799999999999999


Q ss_pred             ceeEEEEEEcccCC------CcccEEEEccC-CCceEEEEEEEEe
Q 009787           90 TVLGSVIVTVESEG------QTGAVWYTLDS-PSGQVCLHIKTIK  127 (525)
Q Consensus        90 d~iG~~~i~l~~l~------~~~~~w~~L~~-~~G~i~l~i~~~~  127 (525)
                      ++||.+.+++..+.      .....|+.|.. ..|++.+.+.+..
T Consensus       464 d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~l  508 (510)
T 3jzy_A          464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQL  508 (510)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEEE
T ss_pred             CceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEEE
Confidence            99999999999882      12568999976 4688888877653

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.58  E-value=2.1e-14  Score=125.24  Aligned_cols=85  Identities=16%  Similarity=0.307  Sum_probs=73.3

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeccc-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd   90 (525)
                      +.+.|.|+|++|++|+.   .|.+||||++. . +..+|+++. +++||.|||+|.|.+......|.|+|||+| .++|+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   76 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   76 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEE
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCC
Confidence            45899999999998853   67899999999 2 334555554 699999999999999877778999999999 88999


Q ss_pred             eeEEEEEEcccC
Q 009787           91 VLGSVIVTVESE  102 (525)
Q Consensus        91 ~iG~~~i~l~~l  102 (525)
                      +||++.+++.++
T Consensus        77 ~iG~~~i~l~~l   88 (131)
T 2cjt_A           77 MVGTVWIPLRTI   88 (131)
T ss_dssp             EEEEEEEEGGGS
T ss_pred             eEEEEEEEHHHh
Confidence            999999999998

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.57  E-value=1.1e-14  Score=132.22  Aligned_cols=86  Identities=16%  Similarity=0.300  Sum_probs=74.4

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeccc-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKS   89 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~d   89 (525)
                      +..+.|.|+|++|++|+   ..|.+||||+++  .+..+|++++ +++||.|||+|.|.+......|.|+|||+| +++|
T Consensus        11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~d   84 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWD   84 (167)
T ss_dssp             SCCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCC
T ss_pred             CceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCC
Confidence            34679999999999884   267899999999  3345666665 699999999999999877778999999999 8899


Q ss_pred             ceeEEEEEEcccC
Q 009787           90 TVLGSVIVTVESE  102 (525)
Q Consensus        90 d~iG~~~i~l~~l  102 (525)
                      ++||++.+++.++
T Consensus        85 d~iG~~~i~L~~l   97 (167)
T 2cjs_A           85 TMVGTVWIPLRTI   97 (167)
T ss_dssp             EEEEEEEEEGGGS
T ss_pred             ceEEEEEEEHHHh
Confidence            9999999999998

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.50  E-value=1.4e-13  Score=136.19  Aligned_cols=103  Identities=33%  Similarity=0.480  Sum_probs=87.7

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d~   83 (525)
                      ..+.|.|+|++|++|+.++..|.+||||.+.+.  +   ..++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            467899999999999999999999999999984  2   356899999999999999999998643   34699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 009787           84 DIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--------------~~~~~~w~~L~~  114 (525)
                      |.++++++||++.+++..+              ......|+.|.+
T Consensus       228 d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             CCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            9999999999999999864              233457888865

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.45  E-value=1.4e-13  Score=151.09  Aligned_cols=105  Identities=20%  Similarity=0.356  Sum_probs=93.9

Q ss_pred             CCCceEEEEEEEEeecCCC---CCCCCCCCcEEEEEEC---CeEEEeecccCCCCCeeccEEEEEecC-CCcEEEEEEEE
Q 009787           10 TNSAYLIKLELLAAKNLIG---ANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYD   82 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~---~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~W~e~f~~~v~~-~~~~L~~~V~d   82 (525)
                      ....+.|.|+|++|++|++   +|..|.+||||++.+.   ...++|+++++++||+|||+|.|.+.. ....|.|+|||
T Consensus        14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D   93 (749)
T 1cjy_A           14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD   93 (749)
T ss_dssp             CCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred             CCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence            3567999999999999998   8888999999999997   467899999999999999999999876 45679999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 009787           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (525)
                      +|.++ |++||++.+++.++  +...+.|++|.+.
T Consensus        94 ~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           94 ANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            99998 99999999999998  4556899999864

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.44  E-value=1.4e-12  Score=112.70  Aligned_cols=115  Identities=14%  Similarity=0.236  Sum_probs=91.1

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeccc-CCCCCeeccEEEEEecC---CCcEEEEEEEEc
Q 009787            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (525)
Q Consensus         8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~   83 (525)
                      ...++...|+|+|.+|.+|+     |.+|||+.+.+.+.+++|+++. ++.||+|||.|++++..   ....|.+.|+|+
T Consensus        15 ~~~~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~   89 (144)
T 3l9b_A           15 VPRGSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNY   89 (144)
T ss_dssp             ----CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEE
T ss_pred             ccCCCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEEC
Confidence            34456678999999999997     5899999999999999999998 69999999999999864   356699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCCC-----ceEEEEEEEEe
Q 009787           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-----GQVCLHIKTIK  127 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~-----G~i~l~i~~~~  127 (525)
                      ++++++++||.+.++|.++  ......+..|....     +.+++.|.+.+
T Consensus        90 ~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           90 SKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             CTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             ccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence            9999999999999999998  33334456665533     33445555443

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.43  E-value=1.4e-12  Score=142.12  Aligned_cols=106  Identities=21%  Similarity=0.298  Sum_probs=92.1

Q ss_pred             CceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEeecccCC-CCCeeccEEEEEecCC-CcEEEEEEEE
Q 009787           12 SAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGS-RYPMWGEEFNFSVDEL-PVQIIVTIYD   82 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~~~~~t-~nP~W~e~f~~~v~~~-~~~L~~~V~d   82 (525)
                      ..+.|.|+|++|++|+.++.  .+.+||||++.+.+     .+++|++++++ +||+|||+|.|.+..+ ...|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57899999999999999884  68999999999843     67899999987 9999999999998654 3579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      +|..+++++||++.+++..+... ..|++|....|+
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G-~r~v~L~d~~g~  609 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  609 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC-cEEEeCCCCCcC
Confidence            99999999999999999999553 469999776655

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.40  E-value=3.7e-14  Score=141.30  Aligned_cols=103  Identities=26%  Similarity=0.398  Sum_probs=87.8

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d~   83 (525)
                      ..|.|.|+|++|++|+.++..|.+||||++++.  +   ..++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            468899999999999999999999999999985  2   467899999999999999999998653   34699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCC-cccEEEEccC
Q 009787           84 DIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDS  114 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L~~  114 (525)
                      |.++++++||.+.+++..++. ...+|+++..
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~  261 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADPHGREHWAEMLA  261 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCHHHHHHHHTSSS
T ss_pred             CCCCCCceEEEEEECCccCCchhHHHHHHHHh
Confidence            999999999999999988754 4455665543

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.28  E-value=3.3e-13  Score=143.15  Aligned_cols=99  Identities=21%  Similarity=0.284  Sum_probs=15.0

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEeecccCC---CCCeeccEEEEEecCCCcEEEEEEEEc-C-
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGS---RYPMWGEEFNFSVDELPVQIIVTIYDW-D-   84 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t---~nP~W~e~f~~~v~~~~~~L~~~V~d~-d-   84 (525)
                      ...+.|.|+|++|++|+++|     ||||.+.+++. ..||++++++   +||.|||+|.|.+.+....|.|+|||. | 
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~   82 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDK   82 (483)
T ss_dssp             EEEECC--------------------------------------------------CCEECC------------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCc
Confidence            44678999999999999876     99999999865 5689999999   999999999999655467799999994 5 


Q ss_pred             --CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           85 --IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        85 --~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                        ..++|++||.+.|++..+  +...+.|++|..
T Consensus        83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             ------------------------CCEECC----
T ss_pred             cccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence              367899999999999998  456688999953

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.23  E-value=1.3e-11  Score=136.60  Aligned_cols=103  Identities=27%  Similarity=0.489  Sum_probs=91.2

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEEecC--CCcEEEEEEEEcCC
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~v~~--~~~~L~~~V~d~d~   85 (525)
                      .+.|.|+|++|++|+++|..|.+||||.+.+     ....++|+++++++||.|||+|.|.+..  ....|.|+|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            4678999999999999999999999999998     4456799999999999999999999754  35669999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccCC
Q 009787           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDSP  115 (525)
Q Consensus        86 ~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~~  115 (525)
                      .++|++||.+.+++.++ ....+.|+.|...
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls~  281 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAGVDGWFKLLSQ  281 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCCEEEEEECBCT
T ss_pred             ccccccccccccchhhhccCCcccceeeccc
Confidence            99999999999999998 4446899999763

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.04  E-value=5e-09  Score=87.81  Aligned_cols=108  Identities=13%  Similarity=0.208  Sum_probs=84.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE----EEe-ecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCC
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK----RFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~----~kT-~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~   87 (525)
                      ...|+|.+.++.--..+......||||.+.++...    .+| .++++|..|.||++|...+.+ .+.|.|.|++...  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence            56788888776542222223468999999986443    244 777889999999999999887 8889999997654  


Q ss_pred             CCceeEEEEEEcccC-------CCcccEEEEccCCCceEEEEEEEE
Q 009787           88 KSTVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTI  126 (525)
Q Consensus        88 ~dd~iG~~~i~l~~l-------~~~~~~w~~L~~~~G~i~l~i~~~  126 (525)
                        +|++.+++++.++       +...+.|++|.+ .|++++.+++.
T Consensus        82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMSVQYF  124 (126)
T ss_dssp             --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEE
T ss_pred             --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEe
Confidence              8999999999988       134578999998 89999998875

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.02  E-value=3.2e-09  Score=117.87  Aligned_cols=107  Identities=16%  Similarity=0.210  Sum_probs=84.3

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEeecccC-CCCCeeccE-EEEE-ecCC-CcEEEEEE
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPG-SRYPMWGEE-FNFS-VDEL-PVQIIVTI   80 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~~~~~-t~nP~W~e~-f~~~-v~~~-~~~L~~~V   80 (525)
                      ..+.|.|+|++|++|+.+    .+||||.+.+.+       .+++|+++.+ ++||+|||+ |.|. +..+ ...|+|.|
T Consensus       648 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V  723 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV  723 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEE
Confidence            357899999999999753    589999999853       5678999876 599999998 9998 6432 35799999


Q ss_pred             EEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce------EEEEEEEEe
Q 009787           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ------VCLHIKTIK  127 (525)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~------i~l~i~~~~  127 (525)
                      ||++    ++|||++.+++..+... -.+++|..+.|+      +.++|.+..
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~G-yR~vpL~~~~g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKPG-YRHVPLRNESNRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCCE-EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             EecC----CCeeeEEEEEHHHcCCc-ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence            9985    78999999999999654 457888775544      445555553

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.99  E-value=5.2e-09  Score=88.85  Aligned_cols=113  Identities=11%  Similarity=0.240  Sum_probs=89.3

Q ss_pred             CCCCCceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCe----EEEe-ecccCCCCCeeccEEEEEecCCCcEEEEEEE
Q 009787            8 PQTNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGSE----KRFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (525)
Q Consensus         8 ~~~~~~g~L~V~i~~A~~L~~~d-~~g~~DPyv~v~~~~~----~~kT-~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~   81 (525)
                      +++.-.+.|+|.+.+..-.+.+. .....||||.+.++..    ..+| .++++|..|+||++|...+.+ .+.|.|.|+
T Consensus         4 ~~~~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vf   82 (138)
T 2enj_A            4 GSSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVK   82 (138)
T ss_dssp             CCSSCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEE
T ss_pred             cccccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEE
Confidence            45566788999998876544332 1346899999998644    2456 667779999999999999887 888999999


Q ss_pred             EcCCCCCCceeEEEEEEcccC-------CCcccEEEEccCCCceEEEEEEEE
Q 009787           82 DWDIIWKSTVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTI  126 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l-------~~~~~~w~~L~~~~G~i~l~i~~~  126 (525)
                      +...    +|++.++|++.++       +...+.|++|.+ .|++++.+++.
T Consensus        83 h~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-~Gkl~v~i~~~  129 (138)
T 2enj_A           83 GKNV----DLISETTVELYSLAERCRKNNGKTEIWLELKP-QGRMLMNARYF  129 (138)
T ss_dssp             CSSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-SCEEEEEEEEC
T ss_pred             cCCC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEE
Confidence            7543    8999999999988       234578999998 89999999886

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.96  E-value=2.9e-09  Score=118.88  Aligned_cols=107  Identities=16%  Similarity=0.250  Sum_probs=83.4

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEeecccC-CCCCeecc-EEEEE-ecC-CCcEEEEEEE
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPG-SRYPMWGE-EFNFS-VDE-LPVQIIVTIY   81 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~-t~nP~W~e-~f~~~-v~~-~~~~L~~~V~   81 (525)
                      ....|.|+|++|++|+..    .+||||.+.+.+      .+++|+++.+ ++||+||| +|.|. +.. ....|+|+||
T Consensus       723 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~  798 (885)
T 3ohm_B          723 VANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAF  798 (885)
T ss_dssp             CCEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             cceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEE
Confidence            356899999999999853    689999999853      2468999976 59999999 69998 643 2456999999


Q ss_pred             EcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce------EEEEEEEEe
Q 009787           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ------VCLHIKTIK  127 (525)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~------i~l~i~~~~  127 (525)
                      |+|    ++|||++.+++..+... -.+++|..+.|+      +.+.|.+..
T Consensus       799 D~d----ddfiG~~~lpL~~L~~G-yR~vpL~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVSAIRSG-YHYVCLRNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             ETT----TEEEEEEEEETTTCCCE-EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             cCC----ccEEeeEEEEHHHcCCC-ceEEEecCCCCCccCceEEEEEEEEEe
Confidence            987    78999999999999654 457888765544      455555553

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.95  E-value=5.2e-09  Score=116.71  Aligned_cols=99  Identities=16%  Similarity=0.203  Sum_probs=79.8

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEee-cccC-CCCCeecc-EEEE-EecCC-CcEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSS-MVPG-SRYPMWGE-EFNF-SVDEL-PVQIIVT   79 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~------~~~kT~-~~~~-t~nP~W~e-~f~~-~v~~~-~~~L~~~   79 (525)
                      ...+.|.|+|++|++|+.    +.+||||.+.+.+      .+++|+ ++.+ ++||+||| +|.| .+..+ ...|.|.
T Consensus       675 ~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~  750 (799)
T 2zkm_X          675 VVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA  750 (799)
T ss_dssp             TTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred             eeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEE
Confidence            457899999999999985    4689999999832      357899 7764 69999999 6999 77432 3479999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      |||+|    +++||++.+++..+... ..|++|....|.
T Consensus       751 V~D~d----~d~iG~~~ipl~~L~~G-~r~v~L~~~~g~  784 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINALNSG-YHHLCLHSESNM  784 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             EEEeC----CCccceEeeehhhcCCC-cEEEeccCCCCC
Confidence            99986    78999999999999543 568899775555

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=92.91  E-value=0.97  Score=38.73  Aligned_cols=87  Identities=17%  Similarity=0.146  Sum_probs=50.7

Q ss_pred             ceeEEEeCCeEEEEecCCCceeEEEEeecccee-ccccccc--cCcEEEEEecCCCCCCCCCC-CCCCCceeEEEeeeec
Q 009787          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQHAFI--NPAITIILRMGAGGHGVPPL-GSPDGRVRYKFASFWN  267 (525)
Q Consensus       192 ~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~~~~--~~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~f~sf~~  267 (525)
                      .|++|+|.++|||-...- ....+.|||..|.. .....++  .+.|.+..+..+  .+.... ..-++ ..++-.+|-+
T Consensus        39 ~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~f~~s~Ki~l~l~~~~--~~~~~gp~~~s~-~~~~kLsFr~  114 (140)
T 2hth_B           39 AGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAP--PNKEPGPFQSSK-NSYIKLSFKE  114 (140)
T ss_dssp             CEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCTTSSCCEEEEEECCCC--CCSSSCCCSTTS-CCEEEEEETT
T ss_pred             CCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeeccccccCceEEEEecCCC--ccCCCCCccccc-CcEEEEEEcC
Confidence            599999999999976543 45778999999999 3323233  235555554211  111110 01122 3455556654


Q ss_pred             --hHHHHHHHHHHHHhh
Q 009787          268 --RNHALRQLQRTAKNY  282 (525)
Q Consensus       268 --rd~~~~~l~~~~~~~  282 (525)
                        .++-+..|.++++..
T Consensus       115 Gg~~eF~~~L~~al~~k  131 (140)
T 2hth_B          115 HGQIEFYRRLSEEMTQR  131 (140)
T ss_dssp             SCHHHHHHHHHHHHHHC
T ss_pred             CCChHHHHHHHHHHHHh
Confidence              456666777666653

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=91.97  E-value=1.7  Score=40.28  Aligned_cols=144  Identities=8%  Similarity=-0.005  Sum_probs=72.0

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeE-EEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTE-SQHAV  415 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~-~Q~~~  415 (525)
                      -+..+++++++++|+.+|.| ..       .|..+|-.+.....-+..+..+. +.|......+.+|-+.+=.. .....
T Consensus        69 k~~~~v~~~~~~v~~~~~~d-~~-------~r~~Wd~~~~~~~vle~~~~~t~-I~~~~~~p~~~~~~~~RDfv~~r~~~  139 (229)
T 1em2_A           69 ILKTFLPCPAELVYQEVILQ-PE-------RMVLWNKTVTACQILQRVEDNTL-ISYDVSAGAAGGVVSPRDFVNVRRIE  139 (229)
T ss_dssp             EEEEEESSCHHHHHHHTTTC-HH-------HHTTTCTTEEEEEEEEEETTTEE-EEEEEECCBTTTTBCCEEEEEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHHhC-cc-------chhhcccccceEEEEEecCCCeE-EEEEEecCcCCCCcCCCeeEEEEEEE
Confidence            34567899999999666553 21       12222222222222111111232 44443211112332222111 12222


Q ss_pred             ecCCCCeEEEEEeeeeCCCCCCCe-EE---EEEEEEEEeeC--CCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHH
Q 009787          416 LSPDKKIFVFETVQQAHDVPFGSY-FE---IHGRWHLETIA--ENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKK  489 (525)
Q Consensus       416 ~~~~~~~~~v~~~~~~~~vPygd~-F~---v~~r~~i~~~~--~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~  489 (525)
                      .. ++.++++.....-+.+|-... =+   ..+.|+|.+..  ++.|++...   +.++..+|. -+.++.+.+...+..
T Consensus       140 ~~-~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~i-P~~l~n~~~~~~~~~  214 (229)
T 1em2_A          140 RR-RDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWI---LNTDLKGRL-PRYLIHQSLAATMFE  214 (229)
T ss_dssp             EC-SSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEE---ECEECCSSS-CHHHHHHHHHHHHHH
T ss_pred             Ec-CCEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEE---EEECCCCCC-CHHHHHHHHHHHHHH
Confidence            23 445666666666777885432 23   34689999875  578999988   888876652 344444444444444


Q ss_pred             HHHHH
Q 009787          490 EVELM  494 (525)
Q Consensus       490 ~~~~~  494 (525)
                      .++.+
T Consensus       215 ~~~~L  219 (229)
T 1em2_A          215 FAFHL  219 (229)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=91.86  E-value=0.87  Score=42.06  Aligned_cols=146  Identities=10%  Similarity=0.056  Sum_probs=76.8

Q ss_pred             eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEe-ec--CCCCCCcceeEeEEEEE
Q 009787          338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRS-LC--KSPIYPRDTAMTESQHA  414 (525)
Q Consensus       338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~-~~--~~~~gpk~~~~~~~Q~~  414 (525)
                      ...+++++++++|++|+.| ...       |..+|-.+...+.-+..+..+. +.|.. +-  ..++.|+.--+  ....
T Consensus        59 ~~~~v~~~~~~v~~~l~~d-~~~-------r~~Wd~~~~~~~vle~~~~~t~-I~y~~~~~~~~~~v~~RDfv~--~r~~  127 (221)
T 3p0l_A           59 LEVVVDQPMERLYEELVER-MEA-------MGEWNPNVKEIKVLQKIGKDTF-ITHELAAEAAGNLVGPRDFVS--VRCA  127 (221)
T ss_dssp             EEEEESSCHHHHHHHHTTT-GGG-------TTTSCTTCSEEEEEEECSSSEE-EEEEEECC---CCSCCEEEEE--EEEE
T ss_pred             EEEEEcCCHHHHHHHHHhc-cch-------hhhcCcchheEEEEEecCCCeE-EEEEeeccccCCccCCceEEE--EEEE
Confidence            4567899999999999853 221       2222222222222111112233 45543 21  12344443222  1112


Q ss_pred             EecCCCCeEEEEEeeeeCCCCCC-CeEEE---EEEEEEEeeCCC--ceEEEEEEeeeeEEEeecceeeeeeeechHHHHH
Q 009787          415 VLSPDKKIFVFETVQQAHDVPFG-SYFEI---HGRWHLETIAEN--SSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYK  488 (525)
Q Consensus       415 ~~~~~~~~~~v~~~~~~~~vPyg-d~F~v---~~r~~i~~~~~~--~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~  488 (525)
                      .. .++.++++......+.+|-. ++-++   .+.|+|.+.+++  +|++...   ..++..+| +-+.++.+.+.... 
T Consensus       128 ~~-~~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~-iP~~lvn~~~~~~~-  201 (221)
T 3p0l_A          128 KR-RGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWL---LSIDLKGW-LPKSIINQVLSQTQ-  201 (221)
T ss_dssp             EE-CSSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEE---ECEECCSS-CCHHHHHHHHHHHH-
T ss_pred             EE-cCCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEE---EEecCCCC-CCHHHHHHHHHHHH-
Confidence            22 34556666566666777763 33333   467999999865  8998888   88887665 23444444333333 


Q ss_pred             HHHHHHHHHHHHHHh
Q 009787          489 KEVELMLETARSYIK  503 (525)
Q Consensus       489 ~~~~~~~~~~~~~~~  503 (525)
                         -..++.+++.++
T Consensus       202 ---~~~~~~Lr~~~~  213 (221)
T 3p0l_A          202 ---VDFANHLRKRLE  213 (221)
T ss_dssp             ---HHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHh
Confidence               345555555555

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=91.18  E-value=5  Score=34.42  Aligned_cols=143  Identities=12%  Similarity=0.042  Sum_probs=74.6

Q ss_pred             cceeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEE
Q 009787          334 LVGIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQH  413 (525)
Q Consensus       334 ~~~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~  413 (525)
                      |+.-.+.+++.|++++|.++=+  ...+.+++-  +...+.     ..+. +..    .+...  ..+||-.......-+
T Consensus         3 m~i~~~~~i~ap~e~Vw~~l~D--~e~~~~w~p--~~~~~~-----~~~~-~~~----~~~~~--~~~g~~~~~~~~~~~   66 (162)
T 2pcs_A            3 LNGNGSIELKGTVEEVWSKLMD--PSILSKCIM--GCKSLE-----LIGE-DKY----KADLQ--IGIAAVKGKYDAIIE   66 (162)
T ss_dssp             CEEEEEEEEESCHHHHHHHHTC--HHHHHHHST--TEEEEE-----EEET-TEE----EEEEE--ECCGGGCEEEEEEEE
T ss_pred             EEEeeEEEecCCHHHHHHHhcC--HHHHHhhCC--CceEeE-----EeCC-CeE----EEEEE--EEeeeEEEEEEEEEE
Confidence            3445677999999999999943  444555542  212222     1112 221    22222  224553333322222


Q ss_pred             E-EecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeec--ceeeeeeeechHHHHHHH
Q 009787          414 A-VLSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKW--CVIQFKIKTGAVNKYKKE  490 (525)
Q Consensus       414 ~-~~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~--~~~K~~Ie~~~~~~~~~~  490 (525)
                      + ...++ ..+.+.....-.    +..+.....|.|+...++.|+|...   ..+.+...  .++..++..    -..+.
T Consensus        67 ~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~gT~v~~~---~~~~~~g~l~~~~~~l~~~----~~~~~  134 (162)
T 2pcs_A           67 VTDIKPP-YHYKLLVNGEGG----PGFVNAEGVIDLTPINDECTQLTYT---YSAEVGGKVAAIGQRMLGG----VAKLL  134 (162)
T ss_dssp             EEEEETT-TEEEEEEEEEET----TEEEEEEEEEEEEESSSSEEEEEEE---EEEEEESGGGGGCHHHHHH----HHHHH
T ss_pred             EEecCCC-cEEEEEEEecCC----CccEEEEEEEEEEecCCCcEEEEEE---EEEEECCCHHHhhHHHHHH----HHHHH
Confidence            3 22333 466665543321    3345678899999866678999998   88877542  222222222    22334


Q ss_pred             HHHHHHHHHHHHhh
Q 009787          491 VELMLETARSYIKI  504 (525)
Q Consensus       491 ~~~~~~~~~~~~~~  504 (525)
                      ++..++.+++.+..
T Consensus       135 ~~~~~~~lk~~~e~  148 (162)
T 2pcs_A          135 ISDFFKKIQKEIAK  148 (162)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            46666666666654

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=90.12  E-value=6.2  Score=34.18  Aligned_cols=145  Identities=14%  Similarity=0.110  Sum_probs=79.9

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHH-HcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRA-ARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~-~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      -.+.+.++|+++||+++..|...++.+.+- ..+..++ .+.|.     .+..|.++|..     -||..   ..+++++
T Consensus         7 ~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~v-eGdg~-----~Gsir~~t~~~-----g~~~~---~~kErle   72 (154)
T 2wql_A            7 SLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGG-----AGTVRIITLPE-----GSPIT---TMTVRTD   72 (154)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEEE-ESSSS-----TTCEEEEECCT-----TCSCC---EEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhhcccccchhhcccceeEEEE-ECCCC-----CCeEEEEEEcC-----CCCce---EEEEEEE
Confidence            345678899999999998754444444432 2233332 23322     35679888732     23322   3456666


Q ss_pred             e-cCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHH
Q 009787          416 L-SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  494 (525)
Q Consensus       416 ~-~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~  494 (525)
                      . ..++..|...  ..--|+....+=+......+.+.++++|.++.+     +.|.+..  -..+.-...+..++....+
T Consensus        73 ~iD~~~~~~~y~--iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t-----~~Y~~~~--~~~~~ee~~~~~~~~~~~~  143 (154)
T 2wql_A           73 AVNKEALSYDST--VIDGDILLGFIESIETHMVVVPTADGGSITKTT-----AIFHTKG--DAVVPEENIKFADAQNTAL  143 (154)
T ss_dssp             EEETTTTEEEEE--EEESGGGTTTEEEEEEEEEEEECTTSCEEEEEE-----EEEEEST--TCCCCHHHHHHHHHHHHHH
T ss_pred             EEehhhCEEEEE--EEeccccccceEEEEEEEEEeeCCCCcEEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHhH
Confidence            4 3333333332  222344333333445667777877788876655     5566522  1122233344555666777


Q ss_pred             HHHHHHHHhh
Q 009787          495 LETARSYIKI  504 (525)
Q Consensus       495 ~~~~~~~~~~  504 (525)
                      ++.++.+|-+
T Consensus       144 ~KaiEayLla  153 (154)
T 2wql_A          144 FKAIEAYLIA  153 (154)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            8888887754

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=89.44  E-value=3.2  Score=38.37  Aligned_cols=148  Identities=10%  Similarity=0.029  Sum_probs=74.8

Q ss_pred             eeeeeeecCHHHHHHHH--cCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCC---CCCCcceeEeEE
Q 009787          337 IYNDVFPCTAEQFFTLL--FSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKS---PIYPRDTAMTES  411 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~l--f~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~---~~gpk~~~~~~~  411 (525)
                      -...+++++++++|++|  +.  .....++-.......+.    +..++   .+ .+-|......   ++.|+.  ....
T Consensus        70 k~~~~v~~~~~~v~~~l~~~d--~~~r~~Wd~~~~~~~vl----e~i~~---~~-~i~~~~~~~~~~~~v~~RD--fv~~  137 (231)
T 2r55_A           70 RGEGIVYGTLEEVWDCVKPAV--GGLRVKWDENVTGFEII----QSITD---TL-CVSRTSTPSAAMKLISPRD--FVDL  137 (231)
T ss_dssp             EEEEEESSCHHHHHHHHCC----CCSHHHHCTTCSEEEEE----EECSS---SE-EEEEEECCCBTTTTBCCEE--EEEE
T ss_pred             EEEEEECCCHHHHHHHHHhhC--cchhhhhccccceeEEE----EEcCC---CE-EEEEEEeccccCCccCCCe--EEEE
Confidence            34567799999999999  73  33333332222111111    11111   12 2333321111   233332  1122


Q ss_pred             EEEEecCCCCeEEEEEeeeeCCCCCC-CeEEEE---EEEEEEeeC--CCceEEEEEEeeeeEEEeecceeeeeeeechHH
Q 009787          412 QHAVLSPDKKIFVFETVQQAHDVPFG-SYFEIH---GRWHLETIA--ENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVN  485 (525)
Q Consensus       412 Q~~~~~~~~~~~~v~~~~~~~~vPyg-d~F~v~---~r~~i~~~~--~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~  485 (525)
                      .......++.++++......+.+|-. ++-+++   +.|+|.+..  ++.|+|...   ..++..+|. -+.++.+.+..
T Consensus       138 r~~~~~~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~i-P~~lvn~~~~~  213 (231)
T 2r55_A          138 VLVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTF---FHTDLSGYL-PQNVVDSFFPR  213 (231)
T ss_dssp             EEEEECTTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEE---ECEECCSSC-CHHHHHHHHHH
T ss_pred             EEEEEcCCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEE---EEeCCCCCc-cHHHHHHHHhH
Confidence            22233344556666676666777754 334443   468999876  578999988   888876653 24444444333


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 009787          486 KYKKEVELMLETARSYIKI  504 (525)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~  504 (525)
                      ++    -.+++.++++++.
T Consensus       214 ~~----~~~~~~Lr~~~~~  228 (231)
T 2r55_A          214 SM----TRFYANLQKAVKQ  228 (231)
T ss_dssp             HH----HHHHHHHHHHHHG
T ss_pred             hH----HHHHHHHHHHHHH
Confidence            33    4445555555544

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=88.77  E-value=5.9  Score=36.43  Aligned_cols=56  Identities=11%  Similarity=0.067  Sum_probs=39.7

Q ss_pred             EEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcCCC----CCCceeEEEEEEcccC
Q 009787           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII----WKSTVLGSVIVTVESE  102 (525)
Q Consensus        47 ~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d~~----~~dd~iG~~~i~l~~l  102 (525)
                      ..+|-+...+.+|.|+|++.+.++.   ....|.|++++...-    ..+..+|-+.++|-+-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~  140 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY  140 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence            3467788889999999999999864   245699999986532    1223567776666544

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=88.73  E-value=4.8  Score=36.52  Aligned_cols=120  Identities=12%  Similarity=0.091  Sum_probs=65.8

Q ss_pred             eeeeeee-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          337 IYNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       337 ~~~~~~~-~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      -...+++ ++++++|+++..  .....++........+.    ..  + +  ...+.+......|+.++.- |.......
T Consensus        55 k~~~~i~~~~~~~v~~~l~d--~~~r~~Wd~~~~~~~vl----e~--~-~--~~i~~~~~~~p~p~~~RD~-v~~~~~~~  122 (214)
T 1ln1_A           55 KVFGVLEDCSPTLLADIYMD--SDYRKQWDQYVKELYEQ----EC--N-G--ETVVYWEVKYPFPMSNRDY-VYLRQRRD  122 (214)
T ss_dssp             EEEEEETTSCHHHHHHHHHC--HHHHHHHCTTEEEEEEE----EE--T-T--EEEEEEEECCCTTSCCEEE-EEEEEEEE
T ss_pred             EEEEEECCCCHHHHHHHHcC--HHHHHHHHHHHhhEEEe----cc--C-C--CEEEEEEEEcCCCCCCceE-EEEEEEEe
Confidence            5567895 999999999875  33333332222222221    11  2 3  2333333333234544332 22222222


Q ss_pred             ecCCCC-e-EEEEEeeeeCCCCCCCeE----EEEEEEEEEeeCCCceEEEEEEeeeeEEEee
Q 009787          416 LSPDKK-I-FVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAHFKK  471 (525)
Q Consensus       416 ~~~~~~-~-~~v~~~~~~~~vPygd~F----~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K  471 (525)
                      ...++. . +++.....-+++|-...|    .....|+|++.++++|++...   ..++..+
T Consensus       123 ~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~---~~~Dp~G  181 (214)
T 1ln1_A          123 LDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMY---YFDNPGG  181 (214)
T ss_dssp             ECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEE---EEECCSS
T ss_pred             cccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEE---EEECCCC
Confidence            333443 3 455555666778754333    356789999998889999998   8887654

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=88.49  E-value=1.9  Score=37.07  Aligned_cols=84  Identities=17%  Similarity=0.205  Sum_probs=50.0

Q ss_pred             ceeEEEeCCeEEEEecCCCceeEEEEeecccee-ccccccccCcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeechHH
Q 009787          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNH  270 (525)
Q Consensus       192 ~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~  270 (525)
                      .|++|+|..+|+|-...-.....+.+||..|.. .....++...++|.+...++       -......|..|.+=. .++
T Consensus        52 ~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~fg~s~Ki~l~~~p~-------~~~~~~~KLsFk~GG-a~e  123 (145)
T 2cay_A           52 RGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDP-------SSSTEFVQLSFRKSD-GVL  123 (145)
T ss_dssp             SEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSSCEEEEEESSC-------SSTTCCEEEEESSSC-CHH
T ss_pred             ccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCccccCceEEEEecCC-------CCCceEEEEEEcCCC-chH
Confidence            599999999999976544333678999999999 33333332234444432111       011234454454433 356


Q ss_pred             HHHHHHHHHHhhc
Q 009787          271 ALRQLQRTAKNYH  283 (525)
Q Consensus       271 ~~~~l~~~~~~~~  283 (525)
                      -+..|.++|++..
T Consensus       124 F~~~l~~al~~~~  136 (145)
T 2cay_A          124 FSQATERALENIL  136 (145)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6677777777643

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=88.45  E-value=1.4  Score=41.36  Aligned_cols=146  Identities=9%  Similarity=0.037  Sum_probs=75.5

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEE-E
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA-V  415 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~-~  415 (525)
                      -+..+++.++.+++..++.|           |..+|-.+..+..-+..+.....+-|..+...|+.|+.   ....+. .
T Consensus        78 K~~~~v~~~~~~v~~~ll~d-----------r~~Wd~~~~~~~vle~id~~~~I~y~~~~~p~p~~~RD---fv~~r~~r  143 (237)
T 2pso_A           78 KASVEVEAPPSVVLNRVLRE-----------RHLWDEDFVQWKVVETLDRQTEIYQYVLNSMAPHPSRD---FVVLRTWK  143 (237)
T ss_dssp             EEEEEESSCHHHHHHHHHHC-----------GGGTCTTBCCCEEEEEEETTEEEEEEEECCSSSCCCEE---EEEEEEEE
T ss_pred             EEEEEEcCChHHHHHHHHhh-----------hhhHHhhhceEEEEEEcCCCcEEEEEEecCCCCcCCeE---EEEEEEEE
Confidence            34678888998887766654           11111111122111111122333333343223343332   122222 2


Q ss_pred             e-cCCCCeEEEEEeeeeCCCCCCCe---EEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHH
Q 009787          416 L-SPDKKIFVFETVQQAHDVPFGSY---FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEV  491 (525)
Q Consensus       416 ~-~~~~~~~~v~~~~~~~~vPygd~---F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~  491 (525)
                      . ..++.++++.....-+++|-.++   ....+.|.|++.++++|+|...   +.++..++.  =..+ +.+.   ....
T Consensus       144 ~~~~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~---~~~Dp~G~i--P~~l-n~~~---~~~~  214 (237)
T 2pso_A          144 TDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHI---CRIDLKGHS--PEWY-SKGF---GHLC  214 (237)
T ss_dssp             SCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEE---EEECCSSSC--TTTT-TTHH---HHHH
T ss_pred             EECCCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEE---EEeCCCCCc--hHHH-HHHH---HHHH
Confidence            1 23456666666766677886632   2346899999999999999998   888876532  2223 3222   1222


Q ss_pred             HHHHHHHHHHHhhc
Q 009787          492 ELMLETARSYIKIC  505 (525)
Q Consensus       492 ~~~~~~~~~~~~~~  505 (525)
                      -..+..+++.++..
T Consensus       215 ~~~l~~LR~~~~~~  228 (237)
T 2pso_A          215 AAEVARIRNSFQPL  228 (237)
T ss_dssp             HHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHhh
Confidence            23455566665543

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=88.18  E-value=12  Score=32.24  Aligned_cols=149  Identities=8%  Similarity=0.038  Sum_probs=84.3

Q ss_pred             eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      ...+.+.++|++++|.++-.|-...+.+++......++..+.|.     .+..|.++|. +     |....  ..++++.
T Consensus         5 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~-----~Gsir~~~~~-~-----G~~~~--~~kErl~   71 (155)
T 1icx_A            5 FENEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGNGG-----PGTIKKIIAI-H-----DGHTS--FVLHKLD   71 (155)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESSSS-----TTCEEEEEEE-S-----SSSEE--EEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCcchhcchhhhhccEEEEEecCCC-----CCeEEEEEEe-c-----CCcce--eEEEEEE
Confidence            45577899999999999863222234555533444455566662     2567999886 2     32211  2345554


Q ss_pred             -ecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHH
Q 009787          416 -LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  494 (525)
Q Consensus       416 -~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~  494 (525)
                       ..+++..|.....-  -|+.-...=+....|.+.+.++++|.++..     ++|.+..-.   ......+..++.+..+
T Consensus        72 ~~D~~~~~~~y~iie--Gd~~~~~~~~~~~~~~v~~~~~~gs~v~w~-----~~y~~~~~~---~~~~~~~~~~~~~~~~  141 (155)
T 1icx_A           72 AIDEANLTYNYSIIG--GEGLDESLEKISYESKILPGPDGGSIGKIN-----VKFHTKGDV---LSETVRDQAKFKGLGL  141 (155)
T ss_dssp             EEEGGGTEEEEEEEE--ETTSCTTEEEEEEEEEEEECGGGCEEEEEE-----EEEEESSSS---CCHHHHTTHHHHHHHH
T ss_pred             EEeccCCEEEEEEEe--cCCCccceEEEEEEEEEEecCCCCEEEEEE-----EEEEECCCC---CCHHHHHHHHHHHHHH
Confidence             33333444433322  122212334456677777776556877666     556553211   2222333447788899


Q ss_pred             HHHHHHHHhhcCC
Q 009787          495 LETARSYIKICTS  507 (525)
Q Consensus       495 ~~~~~~~~~~~~~  507 (525)
                      ++.+++++-++.+
T Consensus       142 ~k~ie~yll~~p~  154 (155)
T 1icx_A          142 FKAIEGYVLAHPD  154 (155)
T ss_dssp             HHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999887753

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=87.78  E-value=3.7  Score=36.54  Aligned_cols=144  Identities=10%  Similarity=0.058  Sum_probs=72.6

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  416 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  416 (525)
                      -...+++.|++++|+++.+  .....++........+..    . ++  + ...+.+......|+.++.  .........
T Consensus        30 k~~~~v~~s~~~v~~~l~D--~~~~~~W~~~~~~~~vle----~-~~--~-~~i~y~~~~~p~p~~~RD--~v~~~~~~~   97 (189)
T 3qsz_A           30 RGEVRLKAAADDVVKVLRD--ANAFRQWMPDVAASELLK----A-TD--T-EQYHYLDNSAPWPVSNRD--GVYHFTYEK   97 (189)
T ss_dssp             EEEEEESSCHHHHHHHHHC--GGGGGGTSTTEEEEEEEE----E-CS--S-EEEEEEEECCSSSCCCEE--EEEEEEEEE
T ss_pred             EEEEEEECCHHHHHHHHHh--HHHhhhHHHhcCEEEEEe----e-cC--C-ceEEEEEeecCCCcCCcc--eEEEEEEEE
Confidence            4567889999999998754  333333332222222221    1 11  1 232322322212333332  222222333


Q ss_pred             cCCCCeEEEEEeeeeCCCCCCCe----EEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHH
Q 009787          417 SPDKKIFVFETVQQAHDVPFGSY----FEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE  492 (525)
Q Consensus       417 ~~~~~~~~v~~~~~~~~vPygd~----F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~  492 (525)
                      ..++ .+.|......+.+|-...    ....+.|+|++ ++++|++...   ..++..++ +.+.++.+.+.......++
T Consensus        98 ~~~g-~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~---~~~dp~G~-iP~~lvn~~~~~~~~~~l~  171 (189)
T 3qsz_A           98 AGDG-AITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQ---MHASPGGS-IPSWLANQTVVETPFGTLK  171 (189)
T ss_dssp             CTTS-CEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEE---EEECSCSS-SCHHHHHHTTTHHHHHHHH
T ss_pred             CCCC-eEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEE---EEeCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence            3344 445545544455664332    23468899999 8889999998   88887642 2344444444444444444


Q ss_pred             HHHHHH
Q 009787          493 LMLETA  498 (525)
Q Consensus       493 ~~~~~~  498 (525)
                      .|-+.+
T Consensus       172 ~L~k~~  177 (189)
T 3qsz_A          172 ALRSHL  177 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            443333

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=87.76  E-value=13  Score=32.24  Aligned_cols=150  Identities=11%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHH-HcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRA-ARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~-~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      ..+.+.++|++++|.++..|-...+.+.+- .-...++..+.|.     .+..|.++|..     -|| ..  ..++++.
T Consensus         6 ~~ei~i~a~a~kvw~~~~~d~~~l~pk~~P~~i~s~e~~eGdgg-----~Gsir~~~~~~-----g~~-~~--~~kErl~   72 (159)
T 4a8u_A            6 ETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGG-----PGTIKKISFPE-----GFP-FK--YVKDRVD   72 (159)
T ss_dssp             EEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSS-----TTCEEEEECCT-----TSS-CS--EEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHhcCccccchhhCchhccEEEEEcCCCC-----CceEEEEEEec-----CCC-cc--EEEEEEE
Confidence            456788999999999996542333444442 3344555677773     25679888752     233 22  4555565


Q ss_pred             e-cCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHH
Q 009787          416 L-SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  494 (525)
Q Consensus       416 ~-~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~  494 (525)
                      . .+++..|.....  --|++-...=+....+.+.+.++++|.++.+     ++|.+..  -..+.-..++..++....+
T Consensus        73 ~iD~~~~~~~y~ii--egd~l~~~~~~y~~ti~v~p~~~ggs~v~wt-----~~y~~~~--~~~~~~~~~k~~~~~~~~~  143 (159)
T 4a8u_A           73 EVDHTNFKYSYSVI--EGGPVGDTLEKISNEIKIVATPNGGSILKIN-----NKYHTKG--DHEVKAEQIKASKEMGETL  143 (159)
T ss_dssp             EEETTTTEEEEEEE--EETTCBTTEEEEEEEEEEEECTTSCEEEEEE-----EEEEESS--SCCC-CHHHHHHHHHHHHH
T ss_pred             EEccccCEEEEEEe--eCCCCccceEEEEEEEEEEECCCCceEEEEE-----EEEEECC--CCcCCHHHHHHHHHHHHHH
Confidence            3 333344444222  1233311133344566677776778877666     5565522  1123333445567788888


Q ss_pred             HHHHHHHHhhcCCC
Q 009787          495 LETARSYIKICTSG  508 (525)
Q Consensus       495 ~~~~~~~~~~~~~~  508 (525)
                      ++.++.++-++.+.
T Consensus       144 ~k~ie~yll~np~~  157 (159)
T 4a8u_A          144 LRAVESYLLAHSDA  157 (159)
T ss_dssp             HHHHHHHHHHCTTT
T ss_pred             HHHHHHHHhhChhh
Confidence            99999998877653

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=87.16  E-value=14  Score=31.91  Aligned_cols=150  Identities=10%  Similarity=0.061  Sum_probs=84.8

Q ss_pred             eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      ...+.++++|++++|.++-.|-...+.+++......++..+.|.     .+..|.++|. +     |....  ..++++.
T Consensus         6 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eGdgg-----~Gsir~~~~~-~-----g~~~~--~~kErl~   72 (158)
T 2qim_A            6 FQDEYTSTIAPAKLYKALVTDADIIIPKAVETIQSVEIVEGNGG-----PGTIKKLTFI-E-----GGESK--YVLHKIE   72 (158)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTEEEEEEEESSSS-----TTCEEEEEEE-E-----TTEEE--EEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCccchhhhHHhhCcEEEEEecCCC-----CCeEEEEEEc-C-----CCcce--eEEEEEE
Confidence            45577999999999999863222234555533444455566662     2567999986 3     32211  2344554


Q ss_pred             -ecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHH
Q 009787          416 -LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  494 (525)
Q Consensus       416 -~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~  494 (525)
                       ..+++..|.....-- ...| ...=+....|.+.+.++++|.++..     ++|.+..  -.......++..++.+..+
T Consensus        73 ~~D~~~~~~~y~iieG-~~~~-~~~~~~~~~~~v~~~~~~gs~v~wt-----~~y~~~~--~~~~~~~~~~~~~~~~~~~  143 (158)
T 2qim_A           73 AIDEANLGYNYSIVGG-VGLP-DTIEKISFETKLVEGANGGSIGKVT-----IKIETKG--DAQPNEEEGKAAKARGDAF  143 (158)
T ss_dssp             EEEGGGTEEEEEEEEE-SSCC-CSEEEEEEEEEEEECSTTCEEEEEE-----EEEEEST--TCCCCHHHHHHHHHHHHHH
T ss_pred             EEecCCCEEEEEEEec-cCCc-cceEEEEEEEEEEecCCCCEEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHH
Confidence             333334444333221 2122 1233456677788876667877666     5565521  0112222333457788899


Q ss_pred             HHHHHHHHhhcCC
Q 009787          495 LETARSYIKICTS  507 (525)
Q Consensus       495 ~~~~~~~~~~~~~  507 (525)
                      ++.+++++.++.+
T Consensus       144 ~k~ie~yll~~p~  156 (158)
T 2qim_A          144 FKAIESYLSAHPD  156 (158)
T ss_dssp             HHHHHHHHHHCSS
T ss_pred             HHHHHHHHHhCcC
Confidence            9999999887753

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=86.44  E-value=5.6  Score=36.56  Aligned_cols=146  Identities=8%  Similarity=0.053  Sum_probs=72.0

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCC--CCCcceeEeEEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSP--IYPRDTAMTESQHA  414 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~--~gpk~~~~~~~Q~~  414 (525)
                      -+..++++|++++|++++....  -.++     +.++.....-..  .+..+..+-|..+-..+  +.|+.-- . ..+.
T Consensus        70 k~~~~v~~~~~~v~~~l~d~~~--r~~W-----d~~~~~~~vle~--id~~~~I~y~~~~~~~~~~v~~RDfv-~-~r~~  138 (224)
T 1jss_A           70 KAQGVMDDVVNNVIDHIRPGPW--RLDW-----DRLMTSLDVLEH--FEENCCVMRYTTAGQLLNIISPREFV-D-FSYT  138 (224)
T ss_dssp             EEEEEESSCHHHHHHHHSSSTT--HHHH-----CSSEEEEEEEEE--CSTTEEEEEEEECCBTTTTBCCEEEE-E-EEEE
T ss_pred             EEEEEEeCCHHHHHHHHhCccc--cccc-----ccceeeEEEEEE--cCCCeEEEEEEcccccCCCCCCCeEE-E-EEEE
Confidence            3466789999999999986321  1221     223332222111  11223333333331111  3343321 1 2222


Q ss_pred             EecCCCCeEEEEEeeeeCCCCCCCeEEEE---EEEEEEeeCC--CceEEEEEEeeeeEEEeecceeeeeeeechHHHHHH
Q 009787          415 VLSPDKKIFVFETVQQAHDVPFGSYFEIH---GRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKK  489 (525)
Q Consensus       415 ~~~~~~~~~~v~~~~~~~~vPygd~F~v~---~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~  489 (525)
                      ....+ .++++.....-++.|- ++=+++   +.|+|.+..+  ++|+|...   +.++..+|. -+.++.+....    
T Consensus       139 ~~~~~-~~vi~~~Sv~hp~~~~-g~VR~~~~~~g~~i~p~~~~~~~t~vt~~---~~~Dp~G~i-P~~lvn~~~~~----  208 (224)
T 1jss_A          139 VGYEE-GLLSCGVSVEWSETRP-EFVRGYNHPCGWFCVPLKDSPSQSLLTGY---IQTDLRGMI-PQSAVDTAMAS----  208 (224)
T ss_dssp             EEETT-EEEEEEEECCCCCCCT-TSEECEECSEEEEEEEETTEEEEEEEEEE---ECEECCSCC-CHHHHHHHHHH----
T ss_pred             EEcCC-eEEEEEeeeecCCCCC-CCEEEEecccEEEEEEcCCCCCceEEEEE---EEeCCCCCc-cHHHHHHHHHH----
Confidence            22333 3544444444466653 555554   6799999865  47888888   888876643 23344433333    


Q ss_pred             HHHHHHHHHHHHHh
Q 009787          490 EVELMLETARSYIK  503 (525)
Q Consensus       490 ~~~~~~~~~~~~~~  503 (525)
                      ..-..+..++++++
T Consensus       209 ~~~~~~~~Lr~~~~  222 (224)
T 1jss_A          209 TLANFYSDLRKGLR  222 (224)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHh
Confidence            33344444444443

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=84.83  E-value=18  Score=31.12  Aligned_cols=149  Identities=8%  Similarity=0.009  Sum_probs=84.1

Q ss_pred             eeeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      ...+.+.++|++++|.++-.|-...+.+++......++..+.|.     .+..|.++|. +     |...  -..++++.
T Consensus         5 ~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~~~i~s~~i~eG~g~-----~Gsir~~~~~-~-----G~~~--~~~kErl~   71 (157)
T 1tw0_A            5 FRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGG-----VGTIKKITAN-E-----GDKT--SFVLQKVD   71 (157)
T ss_dssp             EEEEEEESSCHHHHHHHHHHTGGGGGGGSCSSEEEEEEEESSSS-----TTCEEEEEEE-E-----TTEE--EEEEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCcchhhhhHHhhccEEEEEeCCCC-----CCeEEEEEee-C-----CCcc--ceEEEEEE
Confidence            45577899999999999863222233444433334445556662     2567999986 2     3221  12455555


Q ss_pred             -ecCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHH
Q 009787          416 -LSPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  494 (525)
Q Consensus       416 -~~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~  494 (525)
                       ..+++..|.....-  -|+.-...=+....|.+.+.++++|.++..     ++|.+..-  .......++..++.+..+
T Consensus        72 ~~D~~~~~~~y~iie--Gd~~~~~~~~~~~~~~v~~~~~~gs~v~w~-----~~y~~~~~--~~~~~~~~~~~~~~~~~~  142 (157)
T 1tw0_A           72 AIDEANLGYDYSIVG--GTGLPESLEKLSFETKVVAGSGGGSISKVT-----LKFHTKGD--APLSDAVRDDALAKGAGF  142 (157)
T ss_dssp             EEETTTTEEEEEEEE--CTTSCTTEEEEEEEEEEEECSSSSEEEEEE-----EEEEESTT--CCCCHHHHHHHHHHHHHH
T ss_pred             EEeccCCEEEEEEEe--cCCCccceEEEEEEEEEEecCCCCEEEEEE-----EEEEECCC--CCCCHHHHHHHHHHHHHH
Confidence             34444444443322  232212344456677788876667877666     55655210  111222333457788889


Q ss_pred             HHHHHHHHhhcC
Q 009787          495 LETARSYIKICT  506 (525)
Q Consensus       495 ~~~~~~~~~~~~  506 (525)
                      ++.+++++.++.
T Consensus       143 ~k~ie~yll~~p  154 (157)
T 1tw0_A          143 FKAIEGYVLANP  154 (157)
T ss_dssp             HHHHHHHHHHCG
T ss_pred             HHHHHHHHHhCc
Confidence            999999887764

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=83.25  E-value=5.3  Score=32.31  Aligned_cols=93  Identities=14%  Similarity=0.213  Sum_probs=58.7

Q ss_pred             CcceeEeeeeeeeecccccceeEEEeCCeEEEEecCCCceeEEEEeecccee-cccccccc-CcEEEEEecCCCCCCCCC
Q 009787          173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQHAFIN-PAITIILRMGAGGHGVPP  250 (525)
Q Consensus       173 ~~E~l~~~~~c~l~~~~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~~~~~-~~i~i~~~~~~~~~~~~~  250 (525)
                      .+|.|+....-.+++.-   |.||++..+|-|-.+-- -.-.+.+++.+|.. +-.+..-+ --++|+.+.+        
T Consensus         5 ~~~~ll~v~~v~yKK~d---GtL~l~~d~i~W~p~~~-~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~--------   72 (108)
T 1pfj_A            5 SEEVLLIVKKVRQKKQD---GALYLMAERIAWAPEGK-DRFTISHMYADIKCQKISPEGKAKIQLQLVLHAG--------   72 (108)
T ss_dssp             SCCEEEEESCCBCSSCB---CEEEEETTEEEEECSSS-SSCSEEEETTTCCCEEECCSSSSSCEEEEECSSS--------
T ss_pred             chheeEEehhheeecCC---ceEEEEcceEEEccCCC-CCceEEEehhhhhcceeCCCCCccEEEEEEEeCC--------
Confidence            34666665555555432   99999999999887544 45567779999999 33222111 2468887632        


Q ss_pred             CCCCCCceeEEEeeee----chHHHHHHHHHHHHhh
Q 009787          251 LGSPDGRVRYKFASFW----NRNHALRQLQRTAKNY  282 (525)
Q Consensus       251 ~~~~~~~~~~~f~sf~----~rd~~~~~l~~~~~~~  282 (525)
                           +...|.|++-.    .||..=.+|..++...
T Consensus        73 -----~~~~F~Ftn~~~a~~erd~VKd~L~~~l~~~  103 (108)
T 1pfj_A           73 -----DTTNFHFSNESTAVKERDAVKDLLQQLLPKF  103 (108)
T ss_dssp             -----CEEEEECCCSSCTTHHHHHHHHHHHHHHHHH
T ss_pred             -----CceEEEEcCcHHHHHHHHHHHHHHHHHHHHH
Confidence                 45677777743    2445556777776653

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=81.02  E-value=26  Score=30.15  Aligned_cols=149  Identities=13%  Similarity=0.165  Sum_probs=84.5

Q ss_pred             eeeeeeeecCHHHHHHHHcCCCCchHHHHHH-HcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEE
Q 009787          336 GIYNDVFPCTAEQFFTLLFSDDSKFTNEYRA-ARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHA  414 (525)
Q Consensus       336 ~~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~-~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~  414 (525)
                      ...+.++++|++++|.++-.|-...+.+++- .....++..+.|.     .+..|.++|. +     |....  ..++++
T Consensus         5 ~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg-----~Gsvr~~~~~-~-----G~~~~--~~kErl   71 (159)
T 1e09_A            5 YESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGG-----PGTIKKITFG-E-----GSQYG--YVKHKI   71 (159)
T ss_dssp             EEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSS-----TTCEEEEEEC-C-----SSSCE--EEEEEE
T ss_pred             EEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCC-----CceEEEEEec-C-----CCCce--EEEEEE
Confidence            4557799999999999986322223444442 3334445556662     2567989885 2     32212  234555


Q ss_pred             E-ecCCCCeEEEEEeeeeCCCCCCC-eEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHH
Q 009787          415 V-LSPDKKIFVFETVQQAHDVPFGS-YFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVE  492 (525)
Q Consensus       415 ~-~~~~~~~~~v~~~~~~~~vPygd-~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~  492 (525)
                      . ..+++..|.....   .+=+..+ .=+....|.+.+.++++|.++..     ++|.+..  -..+....++..++.+.
T Consensus        72 ~~~D~~~~~~~y~ii---eG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt-----~~y~~~~--~~~~~~~~~~~~~~~~~  141 (159)
T 1e09_A           72 DSIDKENYSYSYTLI---EGDALGDTLEKISYETKLVASPSGGSIIKST-----SHYHTKG--NVEIKEEHVKAGKEKAS  141 (159)
T ss_dssp             EEEETTTTEEEEEEC---CCTTTGGGEEEEEEEEEECCCTTSSEEEEEE-----EEEEECS--SCCCCHHHHHHHHHHHH
T ss_pred             EEEcCCCCEEEEEEE---ecccCcccceEEEEEEEEEecCCCCEEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHH
Confidence            5 3444445444332   2212222 22445667777776667877666     5565421  11122223344578889


Q ss_pred             HHHHHHHHHHhhcCC
Q 009787          493 LMLETARSYIKICTS  507 (525)
Q Consensus       493 ~~~~~~~~~~~~~~~  507 (525)
                      .+++.+++++.++.+
T Consensus       142 ~~~k~ie~yll~~~~  156 (159)
T 1e09_A          142 NLFKLIETYLKGHPD  156 (159)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhChh
Confidence            999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	525
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-16
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	7e-16
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	6e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-12
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-12
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-12
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-11
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	3e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	8e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-10
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	8e-10
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-09
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-09
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	3e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	5e-09
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-08

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 2e-16
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI 126
            + VT++D D       LG V + + S        Y L +        G + L +  I
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI 124

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.1 bits (176), Expect = 7e-16
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 75  QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
           ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ + +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +
Sbjct: 16  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +   ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 76  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNL---IGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +        ++ +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D      + +T+ D + +     LG+   TV S   G+   V +   +   ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF-NQVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 11  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 67

Query: 62  GEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +    ++   +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 68  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 127

Query: 118 QVC 120
           Q+ 
Sbjct: 128 QIA 130

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYA---IITCGSEKRFSSMVPGSR 57
                 D Q N    + + ++ A  L   ++ GTSDPY    ++    +K  + +   + 
Sbjct: 24  QYSLDYDFQNNQ---LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80

Query: 58  YPMWGEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTL 112
            P++ E+F F V    +    +++ +YD+D   K  ++G   V + +   G     W  L
Sbjct: 81  NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

Query: 113 DS 114
            S
Sbjct: 141 QS 142

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSVD 70
           + + +L AK+L         +PY  I          KR +  V  +  P W + F +S  
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 71  ELP----VQIIVTIYDWDIIWKS--TVLGSVIVTVES-EGQTGAVWYTL 112
                    + +T++D   + +     LG +++ +E+        WY L
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 10/102 (9%)

Query: 31  LNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85
            +  S P+  +           +       + YP W   F+  + E  V I + +     
Sbjct: 20  EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV-IQIVLMRAAE 78

Query: 86  IWKSTV---LGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
              S V   +  +    +        W  L  P  +V + ++
Sbjct: 79  DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-PQAKVLMCVQ 119

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 8e-11
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 16  IKLELLAAKNL--IGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNF 67
           +++ +++ + L  +  N N   DP  I+           ++ + +      P W  EF F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 68  SV-DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118
            V       +   + D+D   K+  +G   +      + G     L S +G 
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN-SLKQGYRHVHLLSKNGD 116

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++   +L   + NG SDP+  +          K  + +   +  P + EEF + + 
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQVC 120
             D     + ++++D+DI   +  +G   + + ++G+    WY    +   ++ 
Sbjct: 77  HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 130

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.9 bits (131), Expect = 8e-10
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITC--------------GSEKRFSSMVPGSRYPMW 61
           + + +L A+NL+  + NG SDP+  +                   KR +  V  S  P W
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 62  GEEFNFSV----DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSP 115
            +   +        +   + VT++D+D    +  LG V++ + S         WY L   
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139

Query: 116 S 116
           +
Sbjct: 140 T 140

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+ + +  AK           + Y  +   + K  +  V GS  P W ++F F ++ L +
Sbjct: 3   LLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDL 58

Query: 75  QIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGAVWYTLDSPS----GQVC 120
            + V +++  +IW     TV   +    +S  +    W TLDS +     ++C
Sbjct: 59  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEIC 111

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           +++ +++AK            PY  +T   + + +     +  P W +     V     +
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSK 66

Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLD 113
           +   ++    +    +LG+  + +         +   V  TL 
Sbjct: 67  LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 109

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFN 66
           +A L+ + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 67  FSV---DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTG-AVWYTL-DSPSGQVC 120
           F V       V + + + D+D I  + V+G   V  E+    G   W  +  +P   V 
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE 136

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.7 bits (128), Expect = 4e-09
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-----SSMVPGSRYPMWGEEFNFSVD 70
           + + +L AKNL   ++ G SDPY  I      +      +++   +  P + E F+F V 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 71  ELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
              +Q   ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE----SEGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E    +  +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 16  IKLELLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV-- 69
             + +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPSG 117
                 + +  TI  +D   +  ++G V++ +   E   G +    +  SG
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	525
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.85
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.82
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.78
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.75
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.73
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.71
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.7
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.69
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.69
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.68
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.67
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.62
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.61
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.61
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.59
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.56
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.56
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.55
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.48
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.24
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	94.39
d1fm4a_	159	Major tree pollen allergen {European white birch (	93.26
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	92.97
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	92.36
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	91.91
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	91.49
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	90.53
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	89.81
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	89.64
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	89.24
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	89.11
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	89.01
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	88.97
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	87.49
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	81.5

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.3e-21  Score=164.68  Aligned_cols=117  Identities=23%  Similarity=0.424  Sum_probs=105.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCc
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd   90 (525)
                      ..-|.|+|+|++|++|+.++..|.+||||++.++++.++|+++.++.||.|+|+|.|.+.+....|.|+|||++..++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            45689999999999999999999999999999999999999999999999999999999887888999999999999999


Q ss_pred             eeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEEEe
Q 009787           91 VLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIK  127 (525)
Q Consensus        91 ~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~l~i~~~~  127 (525)
                      +||++.+++..+......|+.|..      ..|.+++++++..
T Consensus        83 ~lG~~~i~l~~l~~~~~~~~~l~~~~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             ECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCCCceEEEccccCCCCceeEEEEEEEEEEE
Confidence            999999999999666678998854      2377777777654

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=4.5e-20  Score=160.40  Aligned_cols=121  Identities=21%  Similarity=0.375  Sum_probs=104.9

Q ss_pred             CCCCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeeccc-CCCCCeeccEEEEEecCCCcEEEEEEEEcCCC
Q 009787            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDII   86 (525)
Q Consensus         8 ~~~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~   86 (525)
                      .+..+.|.|+|+|++|++|+.++..|.+||||+++++...++|++++ +++||.|||+|.|.+.+....|.|+|||+|..
T Consensus         4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~   83 (136)
T d1wfja_           4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCC
Confidence            45567899999999999999999999999999999999999999886 58999999999999988778899999999999


Q ss_pred             CCCceeEEEEEEcccC---CCcccEEEEccCC---CceEEEEEEEEec
Q 009787           87 WKSTVLGSVIVTVESE---GQTGAVWYTLDSP---SGQVCLHIKTIKL  128 (525)
Q Consensus        87 ~~dd~iG~~~i~l~~l---~~~~~~w~~L~~~---~G~i~l~i~~~~~  128 (525)
                      ++|++||++.|+|.++   +.....|+.|...   .|+|++.+.+.+.
T Consensus        84 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence            9999999999999987   4445679998542   2777777777653

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.78  E-value=1e-18  Score=151.71  Aligned_cols=115  Identities=17%  Similarity=0.239  Sum_probs=99.9

Q ss_pred             CceEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCeE-EEeecccCCCCCeeccEEEEEecCCCcEEEEE
Q 009787           12 SAYLIKLELLAAKNLIGAN-----------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d-----------~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~   79 (525)
                      -.|.|+|+|++|++|++++           ..+.+||||++++++.. .+|+++.++.||.|||+|.|.+.+ ...|.|+
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~   82 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEE
Confidence            3699999999999999764           36678999999999866 479999999999999999999875 5779999


Q ss_pred             EEEcCCCCCCceeEEEEEEcccC----CCcccEEEEccCCCceEEEEEEEEec
Q 009787           80 IYDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIKTIKL  128 (525)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l----~~~~~~w~~L~~~~G~i~l~i~~~~~  128 (525)
                      |||++.+++|++||.+.|++.++    ....+.|++|.+ .|++++.+.+...
T Consensus        83 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-~G~v~l~v~~~~~  134 (136)
T d1gmia_          83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSGS  134 (136)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEEE
T ss_pred             EEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-CcEEEEEEEEEeC
Confidence            99999999999999999999988    233568999986 7999999888753

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=3.2e-18  Score=147.76  Aligned_cols=103  Identities=27%  Similarity=0.483  Sum_probs=91.4

Q ss_pred             CceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEEecCC--CcEEEEEEEEcC
Q 009787           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWD   84 (525)
Q Consensus        12 ~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~v~~~--~~~L~~~V~d~d   84 (525)
                      ..+.|.|+|++|++|+.++..|.+||||++++     +...++|+++.++.||.|||+|.|.+...  ...|.|+|||+|
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            35789999999999999999999999999998     45567999999999999999999997643  456999999999


Q ss_pred             CCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 009787           85 IIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~  114 (525)
                      .+++|++||.+.|++.++ ....+.||+|.+
T Consensus        93 ~~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~  123 (132)
T d1a25a_          93 LTSRNDFMGSLSFGISELQKAGVDGWFKLLS  123 (132)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCCcEeEEEEEeHHHcCCCCCCeEEECCC
Confidence            999999999999999998 445678999976

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-17  Score=142.03  Aligned_cols=111  Identities=19%  Similarity=0.334  Sum_probs=91.9

Q ss_pred             ceEEEEEEEEeecCCCCC---CCCCCCcEEEEEECC---eEEEeecccCCCCCeeccEEEEEecCC-CcEEEEEEEEcCC
Q 009787           13 AYLIKLELLAAKNLIGAN---LNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDI   85 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d---~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~W~e~f~~~v~~~-~~~L~~~V~d~d~   85 (525)
                      .+.|+|+|++|+||+...   ..|.+||||.+.++.   +.++|+++.++.||.|||+|.|.+.+. ...|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            578999999999998753   468899999999964   567899999999999999999998764 4579999999986


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC-CceEEEEEE
Q 009787           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIK  124 (525)
Q Consensus        86 ~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~l~i~  124 (525)
                      . +|++||++.++|.++  +...+.||+|.+. .|.+.+.++
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~  122 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE  122 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEE
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEE
Confidence            5 688999999999998  5667789999763 244444444

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.3e-17  Score=140.60  Aligned_cols=89  Identities=11%  Similarity=0.231  Sum_probs=82.0

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCcee
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~i   92 (525)
                      .+.|.|+|++|++|+..+..+.+||||.+.++++.++|++++++.||.|||.|.|.+.+ ...|.|+|||++.+++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceE
Confidence            47899999999999998888999999999999999999999999999999999999876 56899999999999999999


Q ss_pred             EEEEEEcccC
Q 009787           93 GSVIVTVESE  102 (525)
Q Consensus        93 G~~~i~l~~l  102 (525)
                      |++.++|.++
T Consensus        84 G~~~i~L~~l   93 (133)
T d2nq3a1          84 GTAALDIYET   93 (133)
T ss_dssp             EEEEEEHHHH
T ss_pred             EEEEEEHHHh
Confidence            9999999876

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=5.1e-17  Score=142.02  Aligned_cols=104  Identities=23%  Similarity=0.413  Sum_probs=91.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEcC
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~d   84 (525)
                      ...+.|.|+|++|+||++++..|.+||||++++   +....+|++++++.||.|||+|.|.+..   ....|.|+|||++
T Consensus        31 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d  110 (143)
T d1rsya_          31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcC
Confidence            345689999999999999999999999999998   4556799999999999999999998743   3567999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 009787           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (525)
                      ..+++++||.+.|+|.++  +....+|++|..
T Consensus       111 ~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            999999999999999998  556679999974

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.5e-16  Score=135.72  Aligned_cols=97  Identities=22%  Similarity=0.383  Sum_probs=85.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCCceeE
Q 009787           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (525)
                      ++|.|+|.+|++|.+++   ..||||++++++.+.+|.+++ +.||.|||+|.|.+.++...|.|+|||++.. +|++||
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            57999999999999876   679999999999999998886 5599999999999988888899999999876 689999


Q ss_pred             EEEEEcccCC----CcccEEEEccCC
Q 009787           94 SVIVTVESEG----QTGAVWYTLDSP  115 (525)
Q Consensus        94 ~~~i~l~~l~----~~~~~w~~L~~~  115 (525)
                      ++.|+|.++.    ...+.||.|..+
T Consensus        77 ~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          77 TVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             EEEEEehhhccCCCCCCCeeEECCcc
Confidence            9999999982    335689999763

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=5.7e-17  Score=139.33  Aligned_cols=105  Identities=23%  Similarity=0.368  Sum_probs=89.3

Q ss_pred             CCCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q 009787           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (525)
Q Consensus        10 ~~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d~   83 (525)
                      .+..+.|.|+|++|+||+.++..|.+||||++++   ....++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        14 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~   93 (130)
T d1dqva1          14 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDF   93 (130)
T ss_dssp             CSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEEC
T ss_pred             ECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEc
Confidence            4567899999999999999999999999999998   34567999999999999999999997542   45699999999


Q ss_pred             CCCCCCceeEEEEEEcccC----CCcccEEEEccC
Q 009787           84 DIIWKSTVLGSVIVTVESE----GQTGAVWYTLDS  114 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l----~~~~~~w~~L~~  114 (525)
                      +.+++|++||++.|++...    ......|++|.+
T Consensus        94 ~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          94 DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             CSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            9999999999999975432    334557999986

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.5e-17  Score=145.20  Aligned_cols=104  Identities=25%  Similarity=0.421  Sum_probs=88.9

Q ss_pred             ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eEEEeecccCCCCCeeccEEEEEecC----CCc
Q 009787           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--------------EKRFSSMVPGSRYPMWGEEFNFSVDE----LPV   74 (525)
Q Consensus        13 ~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~--------------~~~kT~~~~~t~nP~W~e~f~~~v~~----~~~   74 (525)
                      .|.|.|+|++|+||++++..|.+||||++++..              .+++|++++++.||.|||+|.|.+..    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            468999999999999999999999999999832              12368888999999999999997322    356


Q ss_pred             EEEEEEEEcCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 009787           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (525)
Q Consensus        75 ~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (525)
                      .|.|+|||+|.+++|++||++.|+|.++  ......||+|.++.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            7999999999999999999999999998  55567899998754

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=5.4e-16  Score=133.27  Aligned_cols=104  Identities=21%  Similarity=0.305  Sum_probs=84.0

Q ss_pred             eEEEEEEEEeecCCCC--CCCCCCCcEEEEEE-----CCeEEEeecccC-CCCCeeccEEEEEecC-CCcEEEEEEEEcC
Q 009787           14 YLIKLELLAAKNLIGA--NLNGTSDPYAIITC-----GSEKRFSSMVPG-SRYPMWGEEFNFSVDE-LPVQIIVTIYDWD   84 (525)
Q Consensus        14 g~L~V~i~~A~~L~~~--d~~g~~DPyv~v~~-----~~~~~kT~~~~~-t~nP~W~e~f~~~v~~-~~~~L~~~V~d~d   84 (525)
                      ..|.|+|++|++|+..  +..+.+||||++++     +...++|+++++ ++||.|||+|.|.+.. ....|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999754  45788999999998     356778998765 4799999999998754 3456999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      ..++|++||++.+++..+... ..|++|..+.|+
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g-~~~~~L~~~~g~  116 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  116 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             CCCCCcEEEEEEEEEeccCCC-CEEEECCCCCcC
Confidence            999999999999999999543 569999765554

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.8e-16  Score=131.12  Aligned_cols=103  Identities=23%  Similarity=0.422  Sum_probs=83.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEeecccCCCCCeeccEEEEE-ecC---CCcEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY   81 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~W~e~f~~~-v~~---~~~~L~~~V~   81 (525)
                      +..+.|.|+|++|+||++++..+.+||||++.+     ....++|++++++.||.|||+|.|. +..   ....|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            446789999999999999998999999999998     2355789999999999999999997 432   2346999999


Q ss_pred             EcCCCC--CCceeEEEEEEcccC-CCcccEEEEcc
Q 009787           82 DWDIIW--KSTVLGSVIVTVESE-GQTGAVWYTLD  113 (525)
Q Consensus        82 d~d~~~--~dd~iG~~~i~l~~l-~~~~~~w~~L~  113 (525)
                      |.+..+  ++++||++.+++.++ .....+||+|+
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~L~  125 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDDEPHWYKLQ  125 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCCCCEEEeCc
Confidence            999764  456999999999998 34456899984

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.1e-15  Score=130.67  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=87.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEEc
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d~   83 (525)
                      ...+.|.|+|++|++|+.   .|.+||||++.+.    ...++|++++++.||.|||+|.|.+..   ....|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T d1wfma_          23 CQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeee
Confidence            346789999999999953   5678999999983    234689999999999999999999854   245699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 009787           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (525)
                      +.++++++||++.|+|.++  ....+.|++|.++.
T Consensus       100 ~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_         100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             cccccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            9999999999999999998  45568999998743

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=3.9e-16  Score=135.17  Aligned_cols=107  Identities=17%  Similarity=0.321  Sum_probs=90.6

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|+||+.++..+.+||||.+++.     ...++|++++++.||.|||+|.|.+...   ...|.|.|||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            5678999999999999999989999999999972     3456899999999999999999998542   4569999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 009787           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (525)
                      ++..+++++||++.+++..+.....+|++|.+.++
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~  126 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD  126 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTT
T ss_pred             CCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCC
Confidence            99999999999999999887555567887754333

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=6e-16  Score=134.27  Aligned_cols=103  Identities=18%  Similarity=0.368  Sum_probs=80.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GS---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~--~~---~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|+||++++..+.+||||++.+  +.   .+++|++++++.||.|||+|.|.+...   ...|.|.|||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d   91 (138)
T d1w15a_          12 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD   91 (138)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEe
Confidence            556789999999999999998999999999997  22   345799999999999999999997542   3459999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 009787           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~  113 (525)
                      ++.++++++||++.+++...+....+|++|.
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll  122 (138)
T d1w15a_          92 SERGSRNEVIGRLVLGATAEGSGGGHWKEIC  122 (138)
T ss_dssp             CCTTSCCEEEEEEEESTTCCSHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEEcchhCCchHHHHHHHH
Confidence            9999999999999999987654445566654

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-14  Score=125.15  Aligned_cols=92  Identities=20%  Similarity=0.320  Sum_probs=79.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCC-CCCcEEEEEE---CCeEEEeecccCCCCCeeccEEEEE-ecCC---CcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFS-VDEL---PVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g-~~DPyv~v~~---~~~~~kT~~~~~t~nP~W~e~f~~~-v~~~---~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|+||+.++..+ .+||||.+.+   ....++|++++++.||.|||+|.|. +...   ...|.|+|||
T Consensus        19 ~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d   98 (138)
T d1ugka_          19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEE
Confidence            34568999999999999988665 4799999998   4567789999999999999999997 4332   3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccC
Q 009787           83 WDIIWKSTVLGSVIVTVESE  102 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l  102 (525)
                      +|.++++++||++.++|.++
T Consensus        99 ~d~~~~~~~iG~~~i~L~~~  118 (138)
T d1ugka_          99 FDRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTC
T ss_pred             CCCCCCCcEEEEEEEEcccc
Confidence            99999999999999999988

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.5e-14  Score=128.17  Aligned_cols=104  Identities=34%  Similarity=0.496  Sum_probs=87.2

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEeecccCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~W~e~f~~~v~~~---~~~L~~~V~d   82 (525)
                      +..+.|.|+|++|+||+..+..+.+||||++++.  .   ..++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        22 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d  101 (157)
T d1uowa_          22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (157)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcc
Confidence            5568999999999999999989999999999973  2   234799999999999999999998643   3469999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC--------------CcccEEEEccC
Q 009787           83 WDIIWKSTVLGSVIVTVESEG--------------QTGAVWYTLDS  114 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~--------------~~~~~w~~L~~  114 (525)
                      ++.++++++||++.|++...+              .....|+.|.+
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             cCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            999999999999999997642              23356777765

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.9e-14  Score=121.85  Aligned_cols=107  Identities=13%  Similarity=0.229  Sum_probs=83.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EEEeecccCCCCCeeccEEEEEecCCCcEEEEEEEEcCCCCCC
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKS   89 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~~~~~t~nP~W~e~f~~~v~~~~~~L~~~V~d~d~~~~d   89 (525)
                      .|+|.|....--+.....+.+||||.++++..     .++|+++++|+||+|||+|.|.+.+ .+.|.|.|||+|    +
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d   78 (123)
T d1bdya_           4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----T
T ss_pred             eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----c
Confidence            34555544422223445788999999998542     3468888999999999999999976 578999999986    6


Q ss_pred             ceeEEEEEEcccC-------CCcccEEEEccCCCceEEEEEEEEe
Q 009787           90 TVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTIK  127 (525)
Q Consensus        90 d~iG~~~i~l~~l-------~~~~~~w~~L~~~~G~i~l~i~~~~  127 (525)
                      +++|.+.+.+..+       +...+.|++|.+ .|++.+.+++..
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeCCC-CEEEEEEEEEec
Confidence            8999999999877       345678999985 799999998863

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.6e-15  Score=132.61  Aligned_cols=104  Identities=27%  Similarity=0.401  Sum_probs=87.5

Q ss_pred             CCceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCeeccEEEEEecC---CCcEEEEEEEE
Q 009787           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (525)
Q Consensus        11 ~~~g~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W~e~f~~~v~~---~~~~L~~~V~d   82 (525)
                      +..|.|.|+|++|+||+..+..+.+||||++++..     .+++|++++++.||.|||+|.|.+..   ....|.|.|||
T Consensus        17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            56789999999999999999899999999999843     24689999999999999999998753   23459999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC-CcccEEEEccC
Q 009787           83 WDIIWKSTVLGSVIVTVESEG-QTGAVWYTLDS  114 (525)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~-~~~~~w~~L~~  114 (525)
                      ++..+++++||++.|+++.+. ....+|++|..
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~  129 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAADPHGREHWAEMLA  129 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSS
T ss_pred             cCCCCCCcEEEEEEECchHcCchhhHHHHHHHh
Confidence            999999999999999998772 33456777654

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6.3e-11  Score=99.52  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=71.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEeec--ccCCCCCeeccE-EEEE-ecCC-CcEEEEEEEEc
Q 009787           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSM--VPGSRYPMWGEE-FNFS-VDEL-PVQIIVTIYDW   83 (525)
Q Consensus        15 ~L~V~i~~A~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~--~~~t~nP~W~e~-f~~~-v~~~-~~~L~~~V~d~   83 (525)
                      +|.|+|++|++|+.+    ..||||.+++-      ..+.+|++  ..+++||.|||+ |.+. +..+ ...|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999765    47999999972      23344444  367899999976 4443 4432 34699999997


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 009787           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (525)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (525)
                      +    |++||++.++++.+..+ ..+++|..+.|+
T Consensus        78 d----~~~lG~~~ipl~~l~~G-yR~vpL~~~~g~  107 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG-YHHLCLHSESNM  107 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             C----CCEEEEEEEEcccCcCC-ceEEEccCCCcC
Confidence            5    78999999999998543 568899876666

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=94.39  E-value=0.54  Score=39.19  Aligned_cols=149  Identities=13%  Similarity=0.122  Sum_probs=87.2

Q ss_pred             eeeeeecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787          338 YNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  416 (525)
Q Consensus       338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  416 (525)
                      .+.+.++|+++||++|+.|-..++.+.. ..-..-++.-+.|.     .+..|.++|...     || .  -..+|++..
T Consensus         7 ~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~-----~GsIr~~~~~~~-----~~-~--~~~KErie~   73 (159)
T d1e09a_           7 SEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGG-----PGTIKKITFGEG-----SQ-Y--GYVKHKIDS   73 (159)
T ss_dssp             EEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSS-----TTCEEEEEECCS-----SS-C--EEEEEEEEE
T ss_pred             EEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCC-----cCcEEEEEEcCC-----CC-c--EEEEEEEEE
Confidence            3556789999999999875334444433 23344555566664     256788887532     33 2  245677774


Q ss_pred             c-CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHH
Q 009787          417 S-PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELML  495 (525)
Q Consensus       417 ~-~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~  495 (525)
                      . ++...+..  +.---|++...+=++.....+...++++|.++.+     ++|.+..  -..+.-.-....++.+..++
T Consensus        74 iD~~~~~~~y--~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt-----~eYe~~~--~~~~~~e~~~~~~e~~~~~~  144 (159)
T d1e09a_          74 IDKENYSYSY--TLIEGDALGDTLEKISYETKLVASPSGGSIIKST-----SHYHTKG--NVEIKEEHVKAGKEKASNLF  144 (159)
T ss_dssp             EETTTTEEEE--EECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEE-----EEEEECS--SCCCCHHHHHHHHHHHHHHH
T ss_pred             EcccccEEEE--EEEecccccccEEEEEEEEEEccCCCCCcEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHHH
Confidence            3 33333333  3332455544444555555666666778887777     4455421  01122222345567788888


Q ss_pred             HHHHHHHhhcCCC
Q 009787          496 ETARSYIKICTSG  508 (525)
Q Consensus       496 ~~~~~~~~~~~~~  508 (525)
                      +.++.+|-++...
T Consensus       145 K~iEayLlanp~~  157 (159)
T d1e09a_         145 KLIETYLKGHPDA  157 (159)
T ss_dssp             HHHHHHHHHCTTS
T ss_pred             HHHHHHHhhChhh
Confidence            9999999988764

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=93.26  E-value=1.6  Score=36.08  Aligned_cols=149  Identities=12%  Similarity=0.168  Sum_probs=86.6

Q ss_pred             eeeeeecCHHHHHHHHcCCCCchHHHHH-HHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787          338 YNDVFPCTAEQFFTLLFSDDSKFTNEYR-AARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  416 (525)
Q Consensus       338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~-~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  416 (525)
                      .+.+.++|++.||++|..|...++.+.. ..-+.-++.-+.|.     .+..|.++|..     -||. .  ..+|++..
T Consensus         7 ~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~-----~GsIr~~~~~~-----~~~~-~--~~Kerve~   73 (159)
T d1fm4a_           7 TEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGG-----PGTIKKINFPE-----GFPF-K--YVKDRVDE   73 (159)
T ss_dssp             EEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSS-----TTCEEEEECCT-----TSSS-S--EEEEEEEE
T ss_pred             EEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCC-----CCCEEEEEecC-----CCCc-e--EEEEEEEE
Confidence            3456788999999999875444444433 22333444455543     25678887632     2332 2  34677764


Q ss_pred             c-CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHH
Q 009787          417 S-PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELML  495 (525)
Q Consensus       417 ~-~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~  495 (525)
                      . .+...+..+..  --|+.-..+=+......+...++++|.++.+     ++|.+..  -..+........++.+..++
T Consensus        74 iD~~~~~~~y~vi--EGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt-----~eYe~~~--~~~~~~e~~k~~ke~~~~~~  144 (159)
T d1fm4a_          74 VDHTNFKYNYSVI--EGGPVGDTLEKISNEIKIVATPDGGCVLKIS-----NKYHTKG--NHEVKAEQVKASKEMGETLL  144 (159)
T ss_dssp             EETTTTEEEEEEE--EBTTBTTTEEEEEEEEEEEECTTSCEEEEEE-----EEEEEST--TCCCCTTTTHHHHHHHHHHH
T ss_pred             EcccccEEEEEEE--eccccccceEEEEEEEEEecCCCCceEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHHH
Confidence            3 33334433222  2343333344556666677777788988877     4454311  11222334456678888899


Q ss_pred             HHHHHHHhhcCCC
Q 009787          496 ETARSYIKICTSG  508 (525)
Q Consensus       496 ~~~~~~~~~~~~~  508 (525)
                      +.++.+|-++...
T Consensus       145 K~iE~YLlanp~~  157 (159)
T d1fm4a_         145 RAVESYLLAHSDA  157 (159)
T ss_dssp             HHHHHHHHHCTTT
T ss_pred             HHHHHHHhhChhh
Confidence            9999999988764

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=92.97  E-value=0.6  Score=38.78  Aligned_cols=150  Identities=8%  Similarity=-0.013  Sum_probs=89.1

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL  416 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~  416 (525)
                      -.+.+.++|+++||.+++.|...++......-+..++..+.     ...+..|.++|..-     ||   ....+|++..
T Consensus         6 ~~E~~~~v~a~k~fka~~~d~~~l~pk~p~~i~s~e~~eGd-----G~~GsIr~~~~~~g-----~~---~~~~Kerie~   72 (157)
T d1xdfa1           6 EDESTSTIAPARLYKALVKDADAIIPKAVEAIQSIETVEGN-----GGPGTIKKLTLIEG-----GE---TKYVLHKIEA   72 (157)
T ss_dssp             EEEEEESSCHHHHHHHHHHSHHHHHHHHCTTEEEEEEEESS-----SSTTCEEEEEEEET-----TE---EEEEEEEEEE
T ss_pred             EEEEeccCCHHHHHHHHhhchhhccccchhheecceeecCC-----CCCCcEEEEEEcCC-----Cc---cEEEEEEEEE
Confidence            34567889999999999875555555543333333333332     22467899988653     33   2357788875


Q ss_pred             cCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHH
Q 009787          417 SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLE  496 (525)
Q Consensus       417 ~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~  496 (525)
                      .++. ...+.-+.---|+....+-++.....+...++++|.++.+     ++|.+..  ...+.-.-.+..++.+..+++
T Consensus        73 vD~e-~~~~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t-----~eYe~~~--~~~~~~e~ik~~~e~~~~~~K  144 (157)
T d1xdfa1          73 VDEA-NLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVT-----IKIETKG--DAQPNEEEGKAAKARGDAFFK  144 (157)
T ss_dssp             EEGG-GTEEEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEE-----EEEEESS--SSCCCHHHHHHHHHHHHTTTH
T ss_pred             Eech-hcEEEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHHHH
Confidence            3322 2233333332334334456777788888888889998887     5566522  111222223345666777888


Q ss_pred             HHHHHHhhcCC
Q 009787          497 TARSYIKICTS  507 (525)
Q Consensus       497 ~~~~~~~~~~~  507 (525)
                      .++.++-++.+
T Consensus       145 ~iEaYLlanpd  155 (157)
T d1xdfa1         145 AIENYLSAHPE  155 (157)
T ss_dssp             HHHHHHHTSGG
T ss_pred             HHHHHHhhCCC
Confidence            88888887753

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.18  Score=39.43  Aligned_cols=64  Identities=17%  Similarity=0.218  Sum_probs=44.7

Q ss_pred             eEeeeeeeeec-ccccceeEEEeCCeEEEEecCCCc--------------eeEEEEeecccee--ccccccccCcEEEEE
Q 009787          177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSR--------------QMKVIIPIGDIDE--RSQHAFINPAITIIL  239 (525)
Q Consensus       177 l~~~~~c~l~~-~~~~~Grlyis~~~~~F~s~~~g~--------------~~~~~i~~~~i~~--k~~~~~~~~~i~i~~  239 (525)
                      ++-+..|.|-. ..-..|++.+|.++++|.+.....              .....+|+++|..  +..-.+-..||+|++
T Consensus         3 v~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif~   82 (110)
T d1t77a2           3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFM   82 (110)
T ss_dssp             CSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEEE
Confidence            34457788866 444579999999999998753211              1234689999999  333344467999999


Q ss_pred             e
Q 009787          240 R  240 (525)
Q Consensus       240 ~  240 (525)
                      .
T Consensus        83 ~   83 (110)
T d1t77a2          83 A   83 (110)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.7  Score=36.77  Aligned_cols=52  Identities=12%  Similarity=0.166  Sum_probs=38.3

Q ss_pred             ccceeEEEeCCeEEEEecCCCceeEEEEeecccee--cccc----ccccCcEEEEEec
Q 009787          190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE--RSQH----AFINPAITIILRM  241 (525)
Q Consensus       190 ~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~--k~~~----~~~~~~i~i~~~~  241 (525)
                      ++.|.||+|+.++.|.+..-.....+-||+.-|..  |...    ..-+-+|+|.+++
T Consensus        27 ~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKD   84 (125)
T d1zsqa1          27 AVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD   84 (125)
T ss_dssp             EEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT
T ss_pred             ccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEecc
Confidence            46799999999999998766656667899999998  2111    1123379999973

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=91.49  E-value=1.9  Score=35.42  Aligned_cols=147  Identities=8%  Similarity=0.006  Sum_probs=88.3

Q ss_pred             eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEe-
Q 009787          338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVL-  416 (525)
Q Consensus       338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~-  416 (525)
                      .+.+.++|+++||++++.|...++.+....-+..++..+.     ...+..|.++|..-     || .  -..+|++.. 
T Consensus         7 ~E~~~~v~a~klfka~~~d~~~l~pk~~~~i~s~e~~eGd-----Gg~GsIk~~~~~~~-----~~-~--~~~Kerie~i   73 (155)
T d1icxa_           7 NEQSSTVAPAKLYKALTKDSDEIVPKVIEPIQSVEIVEGN-----GGPGTIKKIIAIHD-----GH-T--SFVLHKLDAI   73 (155)
T ss_dssp             EEEEESSCHHHHHHHHTTTHHHHHHHHSTTEEEEEEEESS-----SSTTCEEEEEEESS-----SS-E--EEEEEEEEEE
T ss_pred             EeEEecCCHHHHhhhheeccchhchhhhhheeeeeEecCC-----CccceEEEEEeccC-----Cc-e--EEEEEEEEEE
Confidence            4567889999999999886555566654322333333332     22367788887652     33 1  245777764 


Q ss_pred             cCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHH
Q 009787          417 SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLE  496 (525)
Q Consensus       417 ~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~  496 (525)
                      ..+...+..  +.---|+-...+-++.....+.+.++++|.++.+     ++|.+..   ..+.....+..++....+++
T Consensus        74 D~en~~~~y--~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t-----~eYe~~g---~~~~e~~~~~~ke~~~~~fK  143 (155)
T d1icxa_          74 DEANLTYNY--SIIGGEGLDESLEKISYESKILPGPDGGSIGKIN-----VKFHTKG---DVLSETVRDQAKFKGLGLFK  143 (155)
T ss_dssp             EGGGTEEEE--EEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEE-----EEEEESS---SSCCHHHHTTHHHHHHHHHH
T ss_pred             cccccEEEE--EEEecccccccEEEEEEEEEEecCCCCCeEEEEE-----EEEEECC---CCCChhhHHHHHHHHHHHHH
Confidence            333333333  3333444434455566666677777778887766     5555522   12334445567788889999


Q ss_pred             HHHHHHhhcCC
Q 009787          497 TARSYIKICTS  507 (525)
Q Consensus       497 ~~~~~~~~~~~  507 (525)
                      .++.+|-++.+
T Consensus       144 ~iE~YLlanPd  154 (155)
T d1icxa_         144 AIEGYVLAHPD  154 (155)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHhhCcC
Confidence            99999988765

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=90.53  E-value=2.3  Score=34.56  Aligned_cols=114  Identities=9%  Similarity=0.010  Sum_probs=67.0

Q ss_pred             eeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEec
Q 009787          338 YNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLS  417 (525)
Q Consensus       338 ~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~  417 (525)
                      .+.+.++|+++||.+++.|...+...+-..-...++.-++|.     .+..|.++|..-     ||   .-..+|++...
T Consensus         7 ~E~~~~v~a~k~~ka~~~d~~~l~~~~p~~i~s~e~~eGdg~-----~GsIr~~~~~~g-----~~---~~~~kErl~~i   73 (147)
T d1txca1           7 DETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGG-----VGTIKKITANEG-----DK---TSFVLQKVDAI   73 (147)
T ss_dssp             EEEEESSCHHHHHHHHHTTHHHHHHHTTSSEEEEEEEESSSS-----TTCEEEEEEEET-----TE---EEEEEEEEEEE
T ss_pred             EEEeccCCHHHHHHhhhcccccCccccccccccceeecCCCC-----cceEEEEEEcCC-----Cc---ceEEEEEEEEE
Confidence            355677899999999988544443332222223334444432     367798888752     32   22456777643


Q ss_pred             -CCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEee
Q 009787          418 -PDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKK  471 (525)
Q Consensus       418 -~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K  471 (525)
                       ++...|..  +..--|++...+-+......+...++++|.++..     +.|.+
T Consensus        74 D~~~~~~~y--~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~-----~~y~~  121 (147)
T d1txca1          74 DEANLGYDY--SIVGGTGLPESLEKLSFETKVVAGSGGGSISKVT-----LKFHT  121 (147)
T ss_dssp             EGGGTEEEE--EEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEE-----EEEEE
T ss_pred             ccCCcEEEE--EEEccCccccceEEEEEEEEEecCCCCCcEEEEE-----EEEEE
Confidence             33334333  3333577666666667777777777888876555     56654

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=89.81  E-value=4.3  Score=33.07  Aligned_cols=146  Identities=13%  Similarity=0.089  Sum_probs=86.0

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHH-HcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRA-ARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~-~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      ..+.+.++|+++||++|..|...++.+.+- .-+.  +.+..|.    ..+..|.++|..     .||..   ..++++.
T Consensus         6 e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~s--veveGdG----~~GsIr~~~~~~-----~~~~~---~~Kerve   71 (153)
T d2bk0a1           6 VLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKS--VEIKGDG----GPGTLKIITLPD-----GGPIT---TMTLRID   71 (153)
T ss_dssp             EEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSE--EEEESSS----STTCEEEEECCT-----TSSCC---EEEEEEE
T ss_pred             EEEEeccCCHHHHHHHHhhcccccccccccceeeE--EEEECCC----CCCeEEEEEEec-----Cccce---eeEEEEE
Confidence            457788999999999987754455565543 2333  3343442    136779888832     24422   3467776


Q ss_pred             e-cCCCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHH
Q 009787          416 L-SPDKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELM  494 (525)
Q Consensus       416 ~-~~~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~  494 (525)
                      . ..++..+..  +.---|+....+=++...+.+.+.++++|.++.+     ++|.+..  -....-.-....++.+-.+
T Consensus        72 ~iD~~~~~~~y--~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t-----~eYe~~~--~~~~~~e~~k~~~e~~~~~  142 (153)
T d2bk0a1          72 GVNKEALTFDY--SVIDGDILLGFIESIENHVVLVPTADGGSICKTT-----AIFHTKG--DAVVPEENIKYANEQNTAL  142 (153)
T ss_dssp             EEETTTTEEEE--EEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEE-----EEEEEST--TCCCCHHHHHHHHHHHHHH
T ss_pred             EEecCccEEEE--EEEecccccccEEEEEEEEEEecCCCCCeEEEEE-----EEEEECC--CCCCCHHHHHHHHHHHHHH
Confidence            4 333334333  2222444444455677778888888888988777     5565522  1122222334556667778


Q ss_pred             HHHHHHHHhhc
Q 009787          495 LETARSYIKIC  505 (525)
Q Consensus       495 ~~~~~~~~~~~  505 (525)
                      ++.++.+|-++
T Consensus       143 ~K~iE~YLlan  153 (153)
T d2bk0a1         143 FKALEAYLIAN  153 (153)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            88888877543

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.64  E-value=0.42  Score=38.42  Aligned_cols=78  Identities=15%  Similarity=0.322  Sum_probs=49.8

Q ss_pred             ceeEEEeCCeEEEEecCCCceeEEEEeecccee-cccccccc--CcEEEEEecCCCCCCCCCCCCCCCceeEEEeeeech
Q 009787          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQHAFIN--PAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNR  268 (525)
Q Consensus       192 ~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r  268 (525)
                      .|++|+|.++|+|-.+.......+.+||..|.. +....++.  +.|.+..+..            .....|+-.||..-
T Consensus        44 ~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~~~~ss~KI~l~l~~~------------~~~~~~vklsFr~g  111 (130)
T d2caya1          44 RGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDP------------SSSTEFVQLSFRKS  111 (130)
T ss_dssp             SEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSSCEEEEEESSC------------SSTTCCEEEEESSS
T ss_pred             CceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEccccCCCCeEEEEeCCC------------CCCCCEEEEEEcCC
Confidence            599999999999987554334569999999999 54444443  3455555321            22345566677654


Q ss_pred             H--HHHHHHHHHHHh
Q 009787          269 N--HALRQLQRTAKN  281 (525)
Q Consensus       269 d--~~~~~l~~~~~~  281 (525)
                      +  +-+..+++.++.
T Consensus       112 g~~~F~~~~~~~~~~  126 (130)
T d2caya1         112 DGVLFSQATERALEN  126 (130)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHH
Confidence            4  334566665543

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=1.6  Score=33.48  Aligned_cols=64  Identities=13%  Similarity=0.193  Sum_probs=41.3

Q ss_pred             cceeEeeeeeeeecccccceeEEEeCCeEEEEecCCCceeEEEEeecccee-cccccccc-CcEEEEEec
Q 009787          174 DEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQHAFIN-PAITIILRM  241 (525)
Q Consensus       174 ~E~l~~~~~c~l~~~~~~~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~~~~~~-~~i~i~~~~  241 (525)
                      +|.|+..=.-.+.+   ..|.||++..+|-|-.+- +-...+.+++.+|.. +..+..-+ ..++|+.+.
T Consensus         6 ~~vll~v~~v~yKK---~~GtL~l~~d~l~W~p~~-~~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~   71 (108)
T d2rnrb1           6 EEVLLIVKKVRQKK---QDGALYLMAERIAWAPEG-KDRFTISHMYADIKCQKISPEGKAKIQLQLVLHA   71 (108)
T ss_dssp             CCCCEEEEEEEESS---CEEEEEECSSEEEEEESS-CSSCSEEEETTTEEEEEECCTTCSSEEEEEEETT
T ss_pred             hhheeeecceEEec---CCcEEEEEcCeEEEEcCC-CCCceEEEEhhhhhceecCCCCcccceeEEEEeC
Confidence            44444433333333   249999999999999875 334568999999999 43332211 257888763

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=2.6  Score=36.06  Aligned_cols=149  Identities=10%  Similarity=0.011  Sum_probs=75.4

Q ss_pred             eeeeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCccee-EeEEEEEE
Q 009787          337 IYNDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTA-MTESQHAV  415 (525)
Q Consensus       337 ~~~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~-~~~~Q~~~  415 (525)
                      -++.++++|++++|..++.| ..       .+..+|-.+..+...+..+.....+-|.... ...+|-+.+ +...+++.
T Consensus        55 k~~~~i~~~~~~v~~~~~~d-~e-------~~~~Wd~~~~~~~ile~~~~~~~i~~~~~~~-~~~~~vs~RD~v~~~~~~  125 (214)
T d1em2a_          55 ILKTFLPCPAELVYQEVILQ-PE-------RMVLWNKTVTACQILQRVEDNTLISYDVSAG-AAGGVVSPRDFVNVRRIE  125 (214)
T ss_dssp             EEEEEESSCHHHHHHHTTTC-HH-------HHTTTCTTEEEEEEEEEETTTEEEEEEEECC-BTTTTBCCEEEEEEEEEE
T ss_pred             EEEEEEeCCHHHHHHHHHhC-hH-------HHHHHHHHHhheEEEEEcCCCceEEEEEecc-cCCCCCCCcEEEEEEEEE
Confidence            46779999999999877752 22       2333333333343322212222332233321 122333332 33344444


Q ss_pred             ecCCCCeEEEEEeeeeCCCCCC-CeEEE---EEEEEEEeeCC--CceEEEEEEeeeeEEEeecceeeeeeeechHHHHHH
Q 009787          416 LSPDKKIFVFETVQQAHDVPFG-SYFEI---HGRWHLETIAE--NSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKK  489 (525)
Q Consensus       416 ~~~~~~~~~v~~~~~~~~vPyg-d~F~v---~~r~~i~~~~~--~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~  489 (525)
                      ...+ .++++......++.|-. ++=++   ...|+|+..+.  ++|++...   +.++..++ +-+.++.......+.+
T Consensus       126 ~~~~-~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~---~~~Dp~G~-iP~~lvn~~~~~~~~~  200 (214)
T d1em2a_         126 RRRD-RYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWI---LNTDLKGR-LPRYLIHQSLAATMFE  200 (214)
T ss_dssp             ECSS-EEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEE---ECEECCSS-SCHHHHHHHHHHHHHH
T ss_pred             EcCC-cEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEE---EEeCCCCC-CCHHHHHHHHHHhHHH
Confidence            4433 35555555555555544 43333   37899998654  57998888   88876554 2344444433344444


Q ss_pred             HHHHHHHHHH
Q 009787          490 EVELMLETAR  499 (525)
Q Consensus       490 ~~~~~~~~~~  499 (525)
                      .++.+-+.++
T Consensus       201 ~~~~Lrk~~~  210 (214)
T d1em2a_         201 FAFHLRQRIS  210 (214)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=88.97  E-value=4.3  Score=31.91  Aligned_cols=141  Identities=9%  Similarity=0.016  Sum_probs=74.2

Q ss_pred             eeeeecCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEEecC
Q 009787          339 NDVFPCTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAVLSP  418 (525)
Q Consensus       339 ~~~~~~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~~~~  418 (525)
                      +-++++|++++|.++-+  -.-+.+|.=-+  .++.   +  .++ +      +|..-+...+||-.....-.-.+....
T Consensus         6 ~~~i~~~~e~v~~~l~D--~~~~~~~~Pg~--~~~~---~--~~~-~------~~~~~~~~~~g~~~~~~~~~~~~~~~~   69 (147)
T d2pcsa1           6 SIELKGTVEEVWSKLMD--PSILSKCIMGC--KSLE---L--IGE-D------KYKADLQIGIAAVKGKYDAIIEVTDIK   69 (147)
T ss_dssp             EEEEESCHHHHHHHHTC--HHHHHHHSTTE--EEEE---E--EET-T------EEEEEEEECCGGGCEEEEEEEEEEEEE
T ss_pred             eEEeCCCHHHHHHHHcC--HHHHHhhCcch--hhce---e--cCC-C------EEEEEEEEeecceeeeeEEEEEEeccC
Confidence            34789999999999943  33333332111  1111   1  111 1      233222233676544443333333222


Q ss_pred             CCCeEEEEEeeeeCCCCCCCeEEEEEEEEEEeeCCCceEEEEEEeeeeEEEeecceeeeeeeechHHHHHHHHHHHHHHH
Q 009787          419 DKKIFVFETVQQAHDVPFGSYFEIHGRWHLETIAENSSTIDIKVVSAGAHFKKWCVIQFKIKTGAVNKYKKEVELMLETA  498 (525)
Q Consensus       419 ~~~~~~v~~~~~~~~vPygd~F~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K~~~~K~~Ie~~~~~~~~~~~~~~~~~~  498 (525)
                      ....+.+......    .+..+.....|.+...++++|+|.++   +.+++..  ++..+..+-...-..+.++..++.+
T Consensus        70 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~T~v~~~---~~~~~~g--~l~~l~~~li~~~~~~~~~~f~~~~  140 (147)
T d2pcsa1          70 PPYHYKLLVNGEG----GPGFVNAEGVIDLTPINDECTQLTYT---YSAEVGG--KVAAIGQRMLGGVAKLLISDFFKKI  140 (147)
T ss_dssp             TTTEEEEEEEEEE----TTEEEEEEEEEEEEESSSSEEEEEEE---EEEEEES--GGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeEeecccc----ccchhcceeEEeeecccCCcEEEEEE---EEEEECc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2234444333322    35677788888888888899999999   9998855  2333333222222334455566666


Q ss_pred             HHHHhh
Q 009787          499 RSYIKI  504 (525)
Q Consensus       499 ~~~~~~  504 (525)
                      ++.+.+
T Consensus       141 ~~~l~~  146 (147)
T d2pcsa1         141 QKEIAK  146 (147)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            665543

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=2.9  Score=33.11  Aligned_cols=87  Identities=15%  Similarity=0.143  Sum_probs=49.8

Q ss_pred             ceeEEEeCCeEEEEecCCCceeEEEEeecccee-ccc-cccccC-cEEEEEecCCCCCCCCCCCCCCCceeEEEeeeech
Q 009787          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDE-RSQ-HAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNR  268 (525)
Q Consensus       192 ~Grlyis~~~~~F~s~~~g~~~~~~i~~~~i~~-k~~-~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~r  268 (525)
                      .|++|+|.+.|+|-..... ...+.+||..|.. +.. +.+..+ -|.+.+.... ..+.++.. +.....++-.+|...
T Consensus        35 ~G~l~LTthRli~~~~~~~-~~s~~lpl~~i~~~e~~~~~fg~s~ki~l~l~~~~-~~~~~gp~-~~s~~~~~KLsFk~G  111 (129)
T d2hthb1          35 AGTLLLSTHRLIWRDQKNH-ECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAP-PNKEPGPF-QSSKNSYIKLSFKEH  111 (129)
T ss_dssp             CEEEEEESSEEEEEETTCC-SCCEEEEGGGEEEEEEECCTTSSCCEEEEEECCCC-CCSSSCCC-STTSCCEEEEEETTS
T ss_pred             ceEEEEEeceEEEecCCCC-ceEEEEEhHHceeeeEEcccccCCceEEEEEccCC-cCCcCCCc-CcCCceEEEEEECCC
Confidence            4999999999999865444 4678999999998 433 344433 5666553211 11111111 111234455566553


Q ss_pred             --HHHHHHHHHHHHh
Q 009787          269 --NHALRQLQRTAKN  281 (525)
Q Consensus       269 --d~~~~~l~~~~~~  281 (525)
                        ++-+..|.++|+.
T Consensus       112 G~~eF~~~l~~al~~  126 (129)
T d2hthb1         112 GQIEFYRRLSEEMTQ  126 (129)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence              3445666666654

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.50  E-value=5.9  Score=33.27  Aligned_cols=120  Identities=11%  Similarity=0.085  Sum_probs=63.6

Q ss_pred             eeeeeee-cCHHHHHHHHcCCCCchHHHHHHHcCCcceEeccceecCCCCCcEEEEEEEeecCCCCCCcceeEeEEEEEE
Q 009787          337 IYNDVFP-CTAEQFFTLLFSDDSKFTNEYRAARKDSNLVMGQWHAADEYDGQVREVAFRSLCKSPIYPRDTAMTESQHAV  415 (525)
Q Consensus       337 ~~~~~~~-~s~~~~f~~lf~d~s~f~~~~~~~~~~~~i~~~~W~~~~~~~~~~R~~~y~~~~~~~~gpk~~~~~~~Q~~~  415 (525)
                      -.+.+++ ++++.++.++..  .....++-.     .+.  ......+  .....+-+.....-|+.|+..-+. .....
T Consensus        48 k~~~~i~~~~~~~~~~~l~d--~~~~~~Wd~-----~~~--~~~~~~~--~~~~i~y~~~~~p~p~~~RD~v~~-~~~~~  115 (203)
T d1ln1a_          48 KVFGVLEDCSPTLLADIYMD--SDYRKQWDQ-----YVK--ELYEQEC--NGETVVYWEVKYPFPMSNRDYVYL-RQRRD  115 (203)
T ss_dssp             EEEEEETTSCHHHHHHHHHC--HHHHHHHCT-----TEE--EEEEEEE--TTEEEEEEEECCCTTSCCEEEEEE-EEEEE
T ss_pred             EEEEEEcCCCHHHHHHHHcC--HhHhhhhcc-----cce--EEEEEcc--CCcEEEEEEcccccccCCceEEEE-EEEEE
Confidence            4567885 999999999875  333232211     111  1111111  122333333444445666542222 22222


Q ss_pred             e-cCCCC-eEEEEEeeeeCCCCCCCeE----EEEEEEEEEeeCCCceEEEEEEeeeeEEEee
Q 009787          416 L-SPDKK-IFVFETVQQAHDVPFGSYF----EIHGRWHLETIAENSSTIDIKVVSAGAHFKK  471 (525)
Q Consensus       416 ~-~~~~~-~~~v~~~~~~~~vPygd~F----~v~~r~~i~~~~~~~~~l~v~~~~~~V~f~K  471 (525)
                      . ..++. ++++......+++|-...+    .....|+|++.++++|++...   +.++-.+
T Consensus       116 ~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~---~~~Dp~G  174 (203)
T d1ln1a_         116 LDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMY---YFDNPGG  174 (203)
T ss_dssp             ECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEE---EEECCSS
T ss_pred             ccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEE---EEcCCCC
Confidence            2 22222 3444445555777755433    345679999999999999998   7776544