Citrus Sinensis ID: 009800

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
MFQAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVQLIK
ccccHHHHHHHccccccccHHHHHHHHHHHHHHcHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEccccccccccccccccccccccHHHHHccccEEEEEEcccccccccccccccHHHHHHcccccccHHHHHHHHHHHHccccEEEEEEccccEEEEEcccccccEEEEccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccccccccccEEcccccEEEEEEEccccEEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEHHHcccHHHHHEEEEEEEEEccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccccEEEcccccccccHHHHHHHHHHHHcc
ccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccHEcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccEEEEEEccccccEEEccccccHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEccccEEEEEEccccccEEEEcccHHHcccccEEEcccccEEEEEEEEEccccEEcHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHcHcHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccccHHHHHccccccccHHHHHHHHHHHHcc
MFQAEEEALLFQQHavgensgqfeetvHPYISKVlmyedpirqeaakktvpverleEKSLVSLAregnfkpskteQDHAFLLQLLFWFKqtfrwvnappcdgcsnetvgqgmgtplpseiQYGAARVELFRCKVcskitrfpryndplklvetkrgrcgewanCFTLYCRAFGYESRLILDFTDhvwtecfsqslgrwmhldpcegiydrpllyekgWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMErdlystddapvslpgrqsgdkewrisrseigsddncslscsscpvrvcIDEHVTTIYNAFSSVLSHfvennvpksgAIELLKILKGILgdlkkspyktrrvslnsvpnngqkiVHQLLPSIGHLLRVLSLKselntdgrvdivlagdpvktslslpVVFKALDDMIHdlnncdnfgkgsfclpllklnrihsgsvlasgeefpfgivtsafdgirpskWEDLMAREVQLIK
MFQAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQeaakktvpverleekslvSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCskitrfpryndplklvetkrgrcgewANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAiskdgvfdvTKRYTRKwhevlsrrniateqtVSAVLAKMTRECRrsfasetlstledrdkcEREAMErdlystddapvslpgrqsgdkewRISRSeigsddncslsCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVslnsvpnngqKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVlagdpvktslSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVQLIK
MFQAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNcslscsscPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIEllkilkgilgdlkkSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVQLIK
**********************FEETVHPYISKVLMYEDP*************************************HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTR************************************************************NCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLM********
***************************HPYISKVLMYEDPIRQEAAKKTVPVERL**********************HAFLLQLLFWFKQTFRWVNAPPCDGCS******************GAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECR********STLEDRDKC************************************************CPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVS*****NN**KIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVQLI*
MFQAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVQLIK
MFQAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSN*******GTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLY*************************************SCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVQLIK
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MFQAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWEDLMAREVQLIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query525 2.2.26 [Sep-21-2011]
Q9FGY9 721 Peptide-N(4)-(N-acetyl-be yes no 0.980 0.714 0.633 0.0
Q7F0R1447 Peptide-N(4)-(N-acetyl-be yes no 0.605 0.711 0.699 1e-137
Q503I8644 Peptide-N(4)-(N-acetyl-be yes no 0.582 0.475 0.440 4e-64
Q5ZJM3651 Peptide-N(4)-(N-acetyl-be yes no 0.556 0.448 0.429 2e-60
Q9JI78651 Peptide-N(4)-(N-acetyl-be yes no 0.556 0.448 0.432 1e-59
Q96IV0654 Peptide-N(4)-(N-acetyl-be yes no 0.563 0.452 0.431 2e-59
Q4R6F3654 Peptide-N(4)-(N-acetyl-be N/A no 0.552 0.443 0.436 2e-59
Q5XI55651 Peptide-N(4)-(N-acetyl-be yes no 0.548 0.442 0.436 1e-57
Q6CAX5356 Peptide-N(4)-(N-acetyl-be yes no 0.470 0.693 0.426 5e-53
Q4IR87451 Protein PNG1 OS=Gibberell yes no 0.531 0.618 0.384 3e-52
>sp|Q9FGY9|PNG1_ARATH Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Arabidopsis thaliana GN=PNG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/516 (63%), Positives = 410/516 (79%), Gaps = 1/516 (0%)

Query: 1   MFQAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSL 60
           M QAEE+A++FQQ     ++G+FE  + PY+S+VLMYEDP+RQ+AA+KTVP + LEEK+L
Sbjct: 94  MLQAEEDAIMFQQFVAARDNGEFEGRIRPYVSQVLMYEDPVRQDAARKTVPKDELEEKAL 153

Query: 61  VSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEI 120
           VSLA+EGNF+PSK E+D+AFLLQLLFWFK++FRWVN PPCD C N+T+GQGMG PL SE+
Sbjct: 154 VSLAKEGNFEPSKEERDYAFLLQLLFWFKKSFRWVNEPPCDFCGNKTIGQGMGNPLTSEL 213

Query: 121 QYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLIL 180
            YGA RVE++RC +C   TRFPRYNDPLKLVETK+GRCGEWANCFTLYCR FGY+SRLI+
Sbjct: 214 AYGANRVEIYRCTMCPTTTRFPRYNDPLKLVETKKGRCGEWANCFTLYCRTFGYDSRLIM 273

Query: 181 DFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRY 240
           DFTDHVWTEC+S SL RW+HLDPCEG+YD+P+LYEKGWNKKLNYVIAISKDGV DVTKRY
Sbjct: 274 DFTDHVWTECYSHSLKRWIHLDPCEGVYDKPMLYEKGWNKKLNYVIAISKDGVCDVTKRY 333

Query: 241 TRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYST 300
           T+KWHEVLSRR + TE ++   L  +TRE RRS   E+LS LE RD+ E+E +ER+L+S 
Sbjct: 334 TKKWHEVLSRRTLTTESSLQDGLRTLTRERRRSLMFESLSKLELRDRNEQEELERNLHSA 393

Query: 301 DDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSH 360
           D+A VSLPGRQSGD+EWRI RSE GSD+N S+S SSCPVR C+D+HVT IY++F  +L+ 
Sbjct: 394 DNASVSLPGRQSGDREWRIMRSEFGSDENSSVSSSSCPVRKCVDDHVTNIYDSFLPILTQ 453

Query: 361 FVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLR 420
           FVE+ +P +   E+LK++K +L DLK +PYKTR+  L    +N      Q LP++G LL 
Sbjct: 454 FVEDGLPVARTNEVLKMIKQVLVDLKNAPYKTRKARLTLDSDNSSSFPEQFLPALGDLLL 513

Query: 421 VLSLKSELNTDGR-VDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLL 479
            LSLKSE +T+G+ V I + G   KT+++LPV   AL +++ DL+   N  K S   PL+
Sbjct: 514 ALSLKSERDTNGKSVTISVDGKLTKTAIALPVALDALRELVADLSKYQNLNKDSLSFPLV 573

Query: 480 KLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWED 515
           K NR+ SGSVLASGEE P GI T+AFDGI+ SKWE+
Sbjct: 574 KQNRVCSGSVLASGEELPSGIATAAFDGIQESKWEE 609
Specifically deglycosylates the denatured form of N-linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. Cleaves the beta-aspartyl-glucosamine (GlcNAc) of the glycan and the amide side chain of Asn, converting Asn to Asp. Prefers proteins containing high-mannose over those bearing complex type oligosaccharides. Can recognize misfolded proteins in the endoplasmic reticulun that are exported in the cytosol to be destroyed and deglycosylate them, while it has no activity toward native proteins. Deglycosylation is prerequisite for subsequent proteasome-mediated degradation of some, but not all, misfolded glycoproteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 2
>sp|Q7F0R1|PNG1_ORYSJ Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Oryza sativa subsp. japonica GN=PNG1 PE=2 SV=1 Back     alignment and function description
>sp|Q503I8|NGLY1_DANRE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Danio rerio GN=ngly1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJM3|NGLY1_CHICK Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Gallus gallus GN=NGLY1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JI78|NGLY1_MOUSE Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Mus musculus GN=Ngly1 PE=1 SV=2 Back     alignment and function description
>sp|Q96IV0|NGLY1_HUMAN Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Homo sapiens GN=NGLY1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R6F3|NGLY1_MACFA Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Macaca fascicularis GN=NGLY1 PE=2 SV=1 Back     alignment and function description
>sp|Q5XI55|NGLY1_RAT Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Rattus norvegicus GN=Ngly1 PE=2 SV=2 Back     alignment and function description
>sp|Q6CAX5|PNG1_YARLI Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNG1 PE=3 SV=1 Back     alignment and function description
>sp|Q4IR87|PNG1_GIBZE Protein PNG1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNG1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
225451303 726 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.980 0.709 0.708 0.0
255542316 719 peptide n-glycanase, putative [Ricinus c 0.963 0.703 0.698 0.0
356573070 715 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.971 0.713 0.685 0.0
356505935 720 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.971 0.708 0.683 0.0
357512279 717 Peptide-N(4)-(N-acetyl-beta-glucosaminyl 0.971 0.711 0.669 0.0
297795715 721 hypothetical protein ARALYDRAFT_495017 [ 0.980 0.714 0.651 0.0
350539878 725 putative peptide:N-glycanase [Solanum ly 0.980 0.710 0.636 0.0
449442921611 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.939 0.806 0.636 0.0
449482972611 PREDICTED: peptide-N(4)-(N-acetyl-beta-g 0.939 0.806 0.634 0.0
15240508 721 peptide-N(4)-(N-acetyl-beta-glucosaminyl 0.980 0.714 0.633 0.0
>gi|225451303|ref|XP_002278422.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Vitis vinifera] gi|298204879|emb|CBI34186.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/515 (70%), Positives = 428/515 (83%)

Query: 1   MFQAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSL 60
           M QAEEEAL+FQQ+   +N  + +  + PY+ +VLMYEDP RQEAA+KTVPV  LEEK+L
Sbjct: 101 MLQAEEEALMFQQYIAYDNGAEMKRKIRPYVEQVLMYEDPKRQEAARKTVPVLELEEKAL 160

Query: 61  VSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEI 120
           VSLA+EGNFKPSKTEQDHAFLLQLLFWFKQ+FRWV+APPCD C N+T+  GMG+PLPSE 
Sbjct: 161 VSLAKEGNFKPSKTEQDHAFLLQLLFWFKQSFRWVDAPPCDSCGNQTISYGMGSPLPSEA 220

Query: 121 QYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLIL 180
            +G +RVEL+RC  CS ITRFPRYNDPLKLVET++GRCGEWANCFTLYCRAFGYESRLIL
Sbjct: 221 LFGGSRVELYRCNSCSTITRFPRYNDPLKLVETRKGRCGEWANCFTLYCRAFGYESRLIL 280

Query: 181 DFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRY 240
           DFTDHVWTECFS   GRWMHLDPCE I+D PLLYEKGWNKKLNY+IAI+KDGV+DVTKRY
Sbjct: 281 DFTDHVWTECFSHCFGRWMHLDPCEAIFDNPLLYEKGWNKKLNYIIAIAKDGVYDVTKRY 340

Query: 241 TRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYST 300
           TRKWHEVLSRRNI TE  +SAVLA +T++CR+ F S+ LSTLE+RD+ E EA+ER+ +S 
Sbjct: 341 TRKWHEVLSRRNITTEAELSAVLAIITKDCRKGFTSQVLSTLEERDRNEMEAIEREYHSK 400

Query: 301 DDAPVSLPGRQSGDKEWRISRSEIGSDDNCSLSCSSCPVRVCIDEHVTTIYNAFSSVLSH 360
           D A   LPGRQSGDKEWRISRSE GSDDN SLS SSCPVR+CIDEHVT +YNA   VL  
Sbjct: 401 DYASTLLPGRQSGDKEWRISRSEFGSDDNSSLSSSSCPVRMCIDEHVTRVYNALYPVLYS 460

Query: 361 FVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLR 420
           F+ N++ KS A+E+LK+ K I+ +L+ SP++ R+ S+ S  ++G+  V Q+LPS G LL 
Sbjct: 461 FILNSLSKSRAVEILKMFKRIVVELRDSPFRMRKTSIKSDSSSGKFFVDQMLPSFGELLE 520

Query: 421 VLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLK 480
            LSLKSEL TDGRV+I LAGDPVKTSL+LPVV   LDD IH+ +NC+NFGK S  LPL+K
Sbjct: 521 ALSLKSELGTDGRVEICLAGDPVKTSLALPVVLDGLDDAIHNFSNCENFGKDSLSLPLVK 580

Query: 481 LNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWED 515
           LNRI SG VLASGEE PFGI TSAFDGI+ SKWE+
Sbjct: 581 LNRICSGFVLASGEELPFGIATSAFDGIQKSKWEE 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542316|ref|XP_002512221.1| peptide n-glycanase, putative [Ricinus communis] gi|223548182|gb|EEF49673.1| peptide n-glycanase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356573070|ref|XP_003554688.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase-like [Glycine max] Back     alignment and taxonomy information
>gi|356505935|ref|XP_003521744.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase-like [Glycine max] Back     alignment and taxonomy information
>gi|357512279|ref|XP_003626428.1| Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Medicago truncatula] gi|355501443|gb|AES82646.1| Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297795715|ref|XP_002865742.1| hypothetical protein ARALYDRAFT_495017 [Arabidopsis lyrata subsp. lyrata] gi|297311577|gb|EFH42001.1| hypothetical protein ARALYDRAFT_495017 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|350539878|ref|NP_001234560.1| putative peptide:N-glycanase [Solanum lycopersicum] gi|303306032|gb|ADM13644.1| putative peptide:N-glycanase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449442921|ref|XP_004139229.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449482972|ref|XP_004156458.1| PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15240508|ref|NP_199768.1| peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Arabidopsis thaliana] gi|75170522|sp|Q9FGY9.1|PNG1_ARATH RecName: Full=Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; AltName: Full=Peptide:N-glycanase; Short=AtPNG1 gi|10177623|dbj|BAB10770.1| unnamed protein product [Arabidopsis thaliana] gi|22655232|gb|AAM98206.1| unknown protein [Arabidopsis thaliana] gi|28059472|gb|AAO30061.1| unknown protein [Arabidopsis thaliana] gi|110736284|dbj|BAF00112.1| hypothetical protein [Arabidopsis thaliana] gi|148589112|emb|CAN87017.1| transglutaminase [Arabidopsis thaliana] gi|332008448|gb|AED95831.1| peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
TAIR|locus:2157869 721 PNG1 "peptide-N-glycanase 1" [ 0.980 0.714 0.610 8.3e-177
UNIPROTKB|E1BKB2657 NGLY1 "Uncharacterized protein 0.662 0.529 0.395 3.3e-63
ZFIN|ZDB-GENE-050522-535644 ngly1 "N-glycanase 1" [Danio r 0.582 0.475 0.440 1.1e-62
UNIPROTKB|F1NWD4651 NGLY1 "Peptide-N(4)-(N-acetyl- 0.556 0.448 0.429 3.8e-62
UNIPROTKB|Q5ZJM3651 NGLY1 "Peptide-N(4)-(N-acetyl- 0.556 0.448 0.429 6.2e-62
UNIPROTKB|E2R815655 NGLY1 "Uncharacterized protein 0.556 0.445 0.442 1.3e-61
UNIPROTKB|F1PRF1578 NGLY1 "Uncharacterized protein 0.556 0.505 0.442 1.3e-61
UNIPROTKB|Q96IV0654 NGLY1 "Peptide-N(4)-(N-acetyl- 0.561 0.451 0.439 3.4e-61
UNIPROTKB|Q4R6F3654 NGLY1 "Peptide-N(4)-(N-acetyl- 0.552 0.443 0.44 3.4e-61
MGI|MGI:1913276651 Ngly1 "N-glycanase 1" [Mus mus 0.556 0.448 0.436 3.4e-61
TAIR|locus:2157869 PNG1 "peptide-N-glycanase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1717 (609.5 bits), Expect = 8.3e-177, P = 8.3e-177
 Identities = 315/516 (61%), Positives = 393/516 (76%)

Query:     1 MFQAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSL 60
             M QAEE+A++FQQ     ++G+FE  + PY+S+VLMYEDP+RQ+AA+KTVP + LEEK+L
Sbjct:    94 MLQAEEDAIMFQQFVAARDNGEFEGRIRPYVSQVLMYEDPVRQDAARKTVPKDELEEKAL 153

Query:    61 VSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEI 120
             VSLA+EGNF+PSK E+D+AFLLQLLFWFK++FRWVN PPCD C N+T+GQGMG PL SE+
Sbjct:   154 VSLAKEGNFEPSKEERDYAFLLQLLFWFKKSFRWVNEPPCDFCGNKTIGQGMGNPLTSEL 213

Query:   121 QYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLIL 180
              YGA RVE++RC +C   TRFPRYNDPLKLVETK+GRCGEWANCFTLYCR FGY+SRLI+
Sbjct:   214 AYGANRVEIYRCTMCPTTTRFPRYNDPLKLVETKKGRCGEWANCFTLYCRTFGYDSRLIM 273

Query:   181 DFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRY 240
             DFTDHVWTEC+S SL RW+HLDPCEG+YD+P+LYEKGWNKKLNYVIAISKDGV DVTKRY
Sbjct:   274 DFTDHVWTECYSHSLKRWIHLDPCEGVYDKPMLYEKGWNKKLNYVIAISKDGVCDVTKRY 333

Query:   241 TRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYST 300
             T+KWHEVLSRR + TE ++   L  +TRE RRS   E+LS LE RD+ E+E +ER+L+S 
Sbjct:   334 TKKWHEVLSRRTLTTESSLQDGLRTLTRERRRSLMFESLSKLELRDRNEQEELERNLHSA 393

Query:   301 DDAPVSLPGRQSGDKEWRISRSEIGSDDNXXXXXXXXPVRVCIDEHVTTIYNAFSSVLSH 360
             D+A VSLPGRQSGD+EWRI RSE GSD+N        PVR C+D+HVT IY++F  +L+ 
Sbjct:   394 DNASVSLPGRQSGDREWRIMRSEFGSDENSSVSSSSCPVRKCVDDHVTNIYDSFLPILTQ 453

Query:   361 FVENNVPKSGAIEXXXXXXXXXXXXXXSPYKTRRVSLNSVPNNGQKIVHQLLPSIGHLLR 420
             FVE+ +P +   E              +PYKTR+  L    +N      Q LP++G LL 
Sbjct:   454 FVEDGLPVARTNEVLKMIKQVLVDLKNAPYKTRKARLTLDSDNSSSFPEQFLPALGDLLL 513

Query:   421 VLSLKSELNTDGR-VDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLL 479
              LSLKSE +T+G+ V I + G   KT+++LPV   AL +++ DL+   N  K S   PL+
Sbjct:   514 ALSLKSERDTNGKSVTISVDGKLTKTAIALPVALDALRELVADLSKYQNLNKDSLSFPLV 573

Query:   480 KLNRIHSGSVLASGEEFPFGIVTSAFDGIRPSKWED 515
             K NR+ SGSVLASGEE P GI T+AFDGI+ SKWE+
Sbjct:   574 KQNRVCSGSVLASGEELPSGIATAAFDGIQESKWEE 609
GO:0003684 "damaged DNA binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=ISS
GO:0005634 "nucleus" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006289 "nucleotide-excision repair" evidence=IEA
GO:0000224 "peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity" evidence=IGI;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0010188 "response to microbial phytotoxin" evidence=IEP
GO:0010193 "response to ozone" evidence=IEP
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
UNIPROTKB|E1BKB2 NGLY1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-535 ngly1 "N-glycanase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWD4 NGLY1 "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJM3 NGLY1 "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R815 NGLY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRF1 NGLY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q96IV0 NGLY1 "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R6F3 NGLY1 "Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
MGI|MGI:1913276 Ngly1 "N-glycanase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FGY9PNG1_ARATH3, ., 5, ., 1, ., 5, 20.63370.98090.7142yesno
Q7F0R1PNG1_ORYSJ3, ., 5, ., 1, ., 5, 20.69900.60570.7114yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.520.914
3rd Layer3.5.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00031149001
SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (745 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00030328001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (395 aa)
    ••  0.833
GSVIVG00025212001
SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (386 aa)
    ••  0.827

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
pfam01841108 pfam01841, Transglut_core, Transglutaminase-like s 2e-16
smart0046068 smart00460, TGc, Transglutaminase/protease-like ho 7e-11
pfam03835142 pfam03835, Rad4, Rad4 transglutaminase-like domain 1e-06
TIGR00605713 TIGR00605, rad4, DNA repair protein rad4 4e-04
COG1305319 COG1305, COG1305, Transglutaminase-like enzymes, p 0.002
>gnl|CDD|216735 pfam01841, Transglut_core, Transglutaminase-like superfamily Back     alignment and domain information 
 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 13/92 (14%)

Query: 124 AARVELFRCK--VCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILD 181
           A  +  +  K        R P  +D  +++ T +G CG++A+ F    RA G  +R +  
Sbjct: 18  AKAIYDYVRKNITYDAPGRSPGDDDAEEVLFTGKGVCGDFASLFVALLRALGIPARYVTG 77

Query: 182 FTD----------HVWTECFSQSLGRWMHLDP 203
           +            H W E +    G W+ +DP
Sbjct: 78  YLRGPDTVRNGDAHAWVEVYLPGYG-WVPVDP 108

This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologues of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease. Length = 108
>gnl|CDD|214673 smart00460, TGc, Transglutaminase/protease-like homologues Back     alignment and domain information
>gnl|CDD|217753 pfam03835, Rad4, Rad4 transglutaminase-like domain Back     alignment and domain information
>gnl|CDD|233048 TIGR00605, rad4, DNA repair protein rad4 Back     alignment and domain information
>gnl|CDD|224224 COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 525
KOG0909500 consensus Peptide:N-glycanase [Posttranslational m 100.0
PF03835145 Rad4: Rad4 transglutaminase-like domain; InterPro: 99.86
TIGR00605713 rad4 DNA repair protein rad4. This family is based 99.79
PF01841113 Transglut_core: Transglutaminase-like superfamily; 99.49
smart0046068 TGc Transglutaminase/protease-like homologues. Tra 99.39
COG1305319 Transglutaminase-like enzymes, putative cysteine p 99.35
KOG2179669 consensus Nucleotide excision repair complex XPC-H 99.09
COG5535650 RAD4 DNA repair protein RAD4 [DNA replication, rec 98.23
PF04473153 DUF553: Transglutaminase-like domain; InterPro: IP 97.01
COG5279521 CYK3 Uncharacterized protein involved in cytokines 94.63
PF13369152 Transglut_core2: Transglutaminase-like superfamily 93.75
PF14381204 EDR1: Ethylene-responsive protein kinase Le-CTR1 91.85
TIGR01385299 TFSII transcription elongation factor S-II. This m 90.29
PF14402313 7TM_transglut: 7 transmembrane helices usually fus 90.02
PF13471117 Transglut_core3: Transglutaminase-like superfamily 87.12
COG1571421 Predicted DNA-binding protein containing a Zn-ribb 85.54
PF1276046 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int 85.18
PRK10941269 hypothetical protein; Provisional 80.76
>KOG0909 consensus Peptide:N-glycanase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-117  Score=918.07  Aligned_cols=419  Identities=42%  Similarity=0.725  Sum_probs=384.3

Q ss_pred             HhhccCchhhHHHHHhhhhhhchhcCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHhhc-
Q 009800           13 QHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-   91 (525)
Q Consensus        13 q~~~~~~~~~f~~~l~s~~~~v~~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~WFK~~-   91 (525)
                      +.++...+++|++.|.+|++||++||||.||++||++||+|+|+++|++++++   ..+++.+.|..+..+||+|||++ 
T Consensus        79 ~f~a~~~~~~Fle~l~~~sqhvlvYEDP~lq~~Als~iPvdEL~~kA~ekla~---~eg~ki~kdy~i~leLL~WFKq~F  155 (500)
T KOG0909|consen   79 SFSALRATNAFLEVLRSYSQHVLVYEDPVLQAKALSTIPVDELKEKASEKLAK---AEGEKIYKDYLIKLELLNWFKQDF  155 (500)
T ss_pred             hhhhhhcchHHHHHHHHhccCceeecCHHHHHHHHhcCCHHHHHHHHHHhhcc---cchhhhhcchHHHHHHHHHHHHhh
Confidence            33445578899999999999999999999999999999999999999998876   22344555555556999999998 


Q ss_pred             CeeecCCCCCCCCCCc-cccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchhhHHHHHHHHH
Q 009800           92 FRWVNAPPCDGCSNET-VGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCR  170 (525)
Q Consensus        92 F~wv~~P~C~~Cg~~t-~~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~GrCgE~A~~F~~l~R  170 (525)
                      |+|||+|||+.||++| ...|.++|+.+|.++||++||+|+|+.||+.+||||||+|.+||+||+|||||||||||++||
T Consensus       156 F~WvN~PpC~~CG~et~~~l~~~~p~eeE~~~Ga~rVEiy~C~~C~~~~RFPRYNdp~kLLeTRkGRCGEWANCFTllcr  235 (500)
T KOG0909|consen  156 FKWVNNPPCNKCGGETSSGLGNQPPNEEEKKFGAGRVEIYKCNRCGTETRFPRYNDPIKLLETRKGRCGEWANCFTLLCR  235 (500)
T ss_pred             heecCCCCcccccccccccccCCCCchhHhhcCCceEEEEEecCCCCcccCcccCCHHHHHhhccCccchHHHHHHHHHH
Confidence            7999999999999999 577888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCeEEEEeCCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhh
Q 009800          171 AFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSR  250 (525)
Q Consensus       171 AlG~~aR~V~d~~dHvW~EVy~~~~~rWI~VDP~e~~~D~PllYe~gwgKklsYVIAFs~dgv~DVTrRYt~~~~~~~~R  250 (525)
                      |+|++||||||.+||||+|||++.++|||||||||+++|+|+||+.||||+|+|||||++|||+||||||+.+|.+++.+
T Consensus       236 alg~daR~i~d~tDHVWtEvYS~~qqRW~HvDpcE~v~D~PllYe~GW~KklsY~iafgkD~VvDVT~RYi~~h~e~~~~  315 (500)
T KOG0909|consen  236 ALGLDARYIWDRTDHVWTEVYSNAQQRWVHVDPCENVFDKPLLYEIGWGKKLSYCIAFGKDGVVDVTWRYILDHKENLLP  315 (500)
T ss_pred             HcCCcceEEeecCcchhHHhhhhhhheeEeecccccccccceeeecccCcccceEEEeccCceEeeehhhhccchhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhhccCCCCCCCCCCCCccccHHHHHhhcCCCCCCCC
Q 009800          251 RNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQSGDKEWRISRSEIGSDDNC  330 (525)
Q Consensus       251 R~rv~E~wl~~~L~~l~~~~r~~ls~~e~~~Le~Rd~~E~~EL~~~~~~~~~~~~~l~GRqSGS~eWr~aRGE~G~~~~~  330 (525)
                      |+.|.|+.|+.+|..||+++|.++++++++.|++||++|+.||.+...+.+++..+||||||||++||.+|||+|.    
T Consensus       316 R~~~~E~~l~~~l~~in~~rr~~lt~~r~~~L~~rd~~e~~El~~~~~~~~~~~~~L~GR~SGs~eWr~~RGE~G~----  391 (500)
T KOG0909|consen  316 RDLCKESVLQQTLQFINKRRRYSLTDDRKKELAQRDEREQIELIRGKTPETPTKSSLPGRQSGSVEWRAQRGEDGK----  391 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHhhcChHHHHHHHhhhHHHHHHHHhccccCCCCCCCCCCcccccHHHHHhhccccc----
Confidence            9999999999999999999999999999999999999999999999998888999999999999999999999998    


Q ss_pred             CcCCCCCCceeecccceeeEeeccchhhhccccCCCchhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhHHHHh
Q 009800          331 SLSCSSCPVRVCIDEHVTTIYNAFSSVLSHFVENNVPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQ  410 (525)
Q Consensus       331 s~~~s~cp~r~c~d~hv~~iY~a~~~~ls~~~~~~~~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~  410 (525)
                                     |++ ||+..-       +   |.+++|++..|||+++.||||+ |++|.+--+-..++     +.
T Consensus       392 ---------------h~~-i~D~~~-------~---~~~~~~e~~~i~r~ve~Dw~mt-ylaR~~~~s~~~is-----w~  439 (500)
T KOG0909|consen  392 ---------------HNT-IYDSYT-------E---WSAQAFELENIFRKVETDWKMT-YLARLEGDSPGNIS-----WH  439 (500)
T ss_pred             ---------------cce-ehhhhh-------h---HHHHHHHHHHHHHHHHhhHHHH-HHHHhcCCCCcccc-----ch
Confidence                           777 887765       1   8999999999999999999999 99999865555544     44


Q ss_pred             h-cccHHHHHHhhccccccCCCCCeEEEecCCCccccchhhHhHHHHHHHHHhcccCcCCCCCcccccccccccccccce
Q 009800          411 L-LPSIGHLLRVLSLKSELNTDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNNCDNFGKGSFCLPLLKLNRIHSGSV  489 (525)
Q Consensus       411 ~-lps~~~ll~~lslk~~~~~~g~~~~~~~~~p~~tsl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  489 (525)
                      | +-+.+.++.++||+.++.|.|+=             ++||.+||.+.. .++++-.++.                   
T Consensus       440 fd~~~~~~~~~~~~l~~~~qtf~~g-------------~~~v~~D~s~~s-ad~~~a~~l~-------------------  486 (500)
T KOG0909|consen  440 FDFKLKGLKVKSESLMAEIQTFGKG-------------CMRVTIDASALS-ADPSNATILK-------------------  486 (500)
T ss_pred             hhhhhcccHHHHHHHHhhhhhcCCC-------------ceEeeechhccc-CCcccCceee-------------------
Confidence            4 44889999999999999999874             888999999887 7777744331                   


Q ss_pred             eccccccccceeeccccCCCcccc
Q 009800          490 LASGEEFPFGIVTSAFDGIRPSKW  513 (525)
Q Consensus       490 ~a~~e~~p~g~~~~af~g~~~~kw  513 (525)
                                |+|.+|+|+.-.||
T Consensus       487 ----------i~t~~~~g~~~~~w  500 (500)
T KOG0909|consen  487 ----------IRTELFSGKGDVKW  500 (500)
T ss_pred             ----------eehhhcCCccccCC
Confidence                      99999999999998

>PF03835 Rad4: Rad4 transglutaminase-like domain; InterPro: IPR018325 RAD4/Xp-C proteins contain an ancient transglutaminase fold that is also found in peptide-N-glycanases (PNGases), which remove glycans from glycoproteins during their degradation Back     alignment and domain information
>TIGR00605 rad4 DNA repair protein rad4 Back     alignment and domain information
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i Back     alignment and domain information
>smart00460 TGc Transglutaminase/protease-like homologues Back     alignment and domain information
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2179 consensus Nucleotide excision repair complex XPC-HR23B, subunit XPC/DPB11 [Replication, recombination and repair] Back     alignment and domain information
>COG5535 RAD4 DNA repair protein RAD4 [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252 Back     alignment and domain information
>COG5279 CYK3 Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning] Back     alignment and domain information
>PF13369 Transglut_core2: Transglutaminase-like superfamily Back     alignment and domain information
>PF14381 EDR1: Ethylene-responsive protein kinase Le-CTR1 Back     alignment and domain information
>TIGR01385 TFSII transcription elongation factor S-II Back     alignment and domain information
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase Back     alignment and domain information
>PF13471 Transglut_core3: Transglutaminase-like superfamily Back     alignment and domain information
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] Back     alignment and domain information
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
2f4m_A295 The Mouse Pngase-Hr23 Complex Reveals A Complete Re 7e-57
1x3z_A335 Structure Of A Peptide:n-Glycanase-Rad23 Complex Le 1e-46
1x3w_A335 Structure Of A Peptide:n-Glycanase-Rad23 Complex Le 4e-46
3esw_A355 Complex Of Yeast Pngase With Glcnac2-Iac Length = 3 3e-45
>pdb|2F4M|A Chain A, The Mouse Pngase-Hr23 Complex Reveals A Complete Remodulation Of The Protein-Protein Interface Compared To Its Yeast Orthologs Length = 295 Back     alignment and structure 
Iteration: 1

 Score =  218 bits (555), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 114/242 (47%), Positives = 146/242 (60%), Gaps = 3/242 (1%)
Query: 31  ISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLL-FWFK 89
           I  V +YE+P+ QE A   +PV  L+ K+   L R           D  FLL  L  WFK
Sbjct: 13  IQHVQLYENPVLQEKALTCIPVSELKRKAQEKLFRARKLDKGTNVSDEDFLLLELLHWFK 72
Query: 90  QTF-RWVNAPPCDGCSNETVGQGMGT-PLPSEIQYGAARVELFRCKVCSKITRFPRYNDP 147
           + F RWVN   C  C  ET  +     P   E+++GA  VE   C  C    RFPRYN+P
Sbjct: 73  EEFFRWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNP 132
Query: 148 LKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFSQSLGRWMHLDPCEGI 207
            KL+ET+ GRCGEWANCFTL CRA G+E+R + D+TDHVWTE +S S  RW+H D CE +
Sbjct: 133 EKLLETRCGRCGEWANCFTLCCRALGFEARYVWDYTDHVWTEVYSPSQQRWLHCDACEDV 192
Query: 208 YDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMT 267
            D+PLLYE GW KKL+Y+IA SKD V DVT RY+ K  EV+SRR    E+ +   +  + 
Sbjct: 193 CDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEELLRETINGLN 252
Query: 268 RE 269
           ++
Sbjct: 253 KQ 254
>pdb|1X3Z|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex Length = 335 Back     alignment and structure
>pdb|1X3W|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex Length = 335 Back     alignment and structure
>pdb|3ESW|A Chain A, Complex Of Yeast Pngase With Glcnac2-Iac Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
1x3z_A335 Peptide: N-glycanase; hydrolase-hydrolase inhibito 1e-102
2f4m_A295 Peptide N-glycanase; glycoproteins, ubiquitin-depe 1e-100
2qsf_A533 RAD4, DNA repair protein RAD4; alpha-beta structur 8e-29
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A* Length = 335 Back     alignment and structure
 Score =  309 bits (791), Expect = e-102
 Identities = 101/316 (31%), Positives = 159/316 (50%), Gaps = 13/316 (4%)

Query: 3   QAEEEALLFQQHAVGENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVS 62
            A  E + FQ   +   +   +  +        +Y++P       +T+ ++ + +     
Sbjct: 27  AAPVENIRFQN--LVHTNQFAQGVLGQSQHLCTVYDNPSWHSIVLETLDLDLIYKNVDKE 84

Query: 63  LAREGNFKPSKTEQDHAFLLQLLFWFKQTF-RWVNAPPCDGCSNET----VGQGMGTPLP 117
            A++G+ +      D   + +LL +FKQ F +W N P C+ C   T       G   P  
Sbjct: 85  FAKDGHAEGENIYTD-YLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNG 143

Query: 118 SEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESR 177
            E ++    VE+++C  C  ITRFPRYNDP+KL+ET++GRCGEW N FTL  ++FG + R
Sbjct: 144 EESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFGLDVR 203

Query: 178 LILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVT 237
            + +  DHVW E FS  L RW+H+D CE  +D+P +Y   WNKK++Y IA  KDGV DV+
Sbjct: 204 YVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDVS 263

Query: 238 KRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDL 297
           KRY  +       R+   E+ +  +   +T+  R S   + +  L  RD+ E+  + R  
Sbjct: 264 KRYILQNE---LPRDQIKEEDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIR-- 318

Query: 298 YSTDDAPVSLPGRQSG 313
             T +         S 
Sbjct: 319 GKTQETKSESVSAASK 334
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A* Length = 295 Back     alignment and structure
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A* Length = 533 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
1x3z_A335 Peptide: N-glycanase; hydrolase-hydrolase inhibito 100.0
2f4m_A295 Peptide N-glycanase; glycoproteins, ubiquitin-depe 100.0
2qsf_A533 RAD4, DNA repair protein RAD4; alpha-beta structur 100.0
3isr_A293 Transglutaminase-like enzymes, putative cysteine; 99.48
2g9g_A221 Pngase, peptide N-glycanase; beta-sandwich, hydrol 99.45
2q3z_A687 Transglutaminase 2; transglutaminase 2, tissue tra 98.86
1vjj_A692 Protein-glutamine glutamyltransferase E; transglut 98.64
1ex0_A731 Coagulation factor XIII A chain; transglutaminase, 98.63
1g0d_A695 Protein-glutamine gamma-glutamyltransferase; tissu 98.62
3kd4_A506 Putative protease; structural genomics, joint cent 98.4
2i74_A189 Pngase; beta-sandwich, hydrolase; HET: MAN; 1.75A 97.45
4fgq_A193 Periplasmic protein; DUF920, protease, calcium bin 94.65
3po3_S178 Transcription elongation factor S-II; RNA polymera 92.02
1pqv_S309 STP-alpha, transcription elongation factor S-II, D 82.12
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A* Back     alignment and structure
Probab=100.00  E-value=2.5e-84  Score=659.47  Aligned_cols=272  Identities=36%  Similarity=0.722  Sum_probs=257.0

Q ss_pred             hhHHHHHhhhhhhch-hcCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHhhc-CeeecCC
Q 009800           21 GQFEETVHPYISKVL-MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-FRWVNAP   98 (525)
Q Consensus        21 ~~f~~~l~s~~~~v~-~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~WFK~~-F~wv~~P   98 (525)
                      ++|+++|++++++|+ +||||.+|++||++|||++|+++|.+...+.++.++++ .++|.+|++||+|||++ |+|||+|
T Consensus        42 ~~f~~~l~~~s~~~~~~Yed~~~~~~al~~iP~d~l~~~a~~~~~~~~~~~~~~-~~~d~ll~~LL~WFk~~fF~wvn~p  120 (335)
T 1x3z_A           42 NQFAQGVLGQSQHLCTVYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGEN-IYTDYLVKELLRYFKQDFFKWCNKP  120 (335)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCHHHHHHHHHHSCHHHHHHHHHHHHHHCCSSSSCT-HHHHHHHHHHHHHHHHTTCEECSSC
T ss_pred             HHHHHHHHHHHHhHHHHhCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCCCcc-chhHHHHHHHHHHHHhcCCEeeCCC
Confidence            589999999999999 99999999999999999999999997766666555654 45678999999999997 8999999


Q ss_pred             CCCCCCCCc---cc-cCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchhhHHHHHHHHHHcCC
Q 009800           99 PCDGCSNET---VG-QGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGY  174 (525)
Q Consensus        99 ~C~~Cg~~t---~~-~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~GrCgE~A~~F~~l~RAlG~  174 (525)
                      ||+.||+++   .. +|+.+|+++|..+||++||+|+|++||+.+||||||+|.+||+||+|+|+|||+||+++|||+|+
T Consensus       121 ~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPRYn~~~~ll~tr~G~C~e~A~lF~~llRalGi  200 (335)
T 1x3z_A          121 DCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFGL  200 (335)
T ss_dssp             CCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHHHHHHHHHHHHHTTTC
T ss_pred             CccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccccCCcCCHHHHHHhCCcChHHHHHHHHHHHHHCCC
Confidence            999999985   45 59999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccc
Q 009800          175 ESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIA  254 (525)
Q Consensus       175 ~aR~V~d~~dHvW~EVy~~~~~rWI~VDP~e~~~D~PllYe~gwgKklsYVIAFs~dgv~DVTrRYt~~~~~~~~RR~rv  254 (525)
                      |||||+|+++|+|+|||++++++|||||||++++|+|++|+.||+|+|+|||||++|||+|||+||+.+ + .+ +|.+|
T Consensus       201 ~aR~V~~~~~H~W~EV~~~~~~rWv~vDp~~~~id~P~~ye~gw~k~msYVIAFs~dgv~DVT~RY~~~-~-~l-rR~rv  277 (335)
T 1x3z_A          201 DVRYVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQ-N-EL-PRDQI  277 (335)
T ss_dssp             CEEEEEETTTEEEEEEEETTTTEEEEEETTTTEESCTHHHHTTSCCCBCCEEEEETTEEEECHHHHCSS-S-BC-CCCSS
T ss_pred             CeEEEecCCCcEEEEEEECCCCCEEEECCCCCccCCCceeecCCCCceEEEEEEcCCCCEECHHHhCcC-C-cc-ccccC
Confidence            999999999999999999998899999999999999999999999999999999999999999999999 4 33 88899


Q ss_pred             cHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHhh
Q 009800          255 TEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERD  296 (525)
Q Consensus       255 ~E~wl~~~L~~l~~~~r~~ls~~e~~~Le~Rd~~E~~EL~~~  296 (525)
                      +|+||..+|..||.++|.++|++++..|++||+.|..||...
T Consensus       278 ~e~wl~~~L~~l~~~~r~~~s~~e~~~L~~Rd~~E~~EL~~~  319 (335)
T 1x3z_A          278 KEEDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIRG  319 (335)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999855
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A* Back     alignment and structure
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A* Back     alignment and structure
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii} Back     alignment and structure
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus musculus} SCOP: b.18.1.29 Back     alignment and structure
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A* Back     alignment and structure
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A* Back     alignment and structure
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A Back     alignment and structure
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 Back     alignment and structure
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>2i74_A Pngase; beta-sandwich, hydrolase; HET: MAN; 1.75A {Mus musculus} SCOP: b.18.1.29 PDB: 2g9f_A Back     alignment and structure
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A Back     alignment and structure
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A Back     alignment and structure
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 525
d1x3za1320 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Bak 1e-106
d2f4ma1287 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {M 1e-102
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 320 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Transglutaminase core
domain: Peptide:N-glycanase 1, PNG1
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  318 bits (816), Expect = e-106
 Identities = 95/283 (33%), Positives = 150/283 (53%), Gaps = 9/283 (3%)

Query: 18  ENSGQFEETVHPYISKVLMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQD 77
             +   +  +        +Y++P       +T+ ++ + +      A++G+ +      D
Sbjct: 40  HTNQFAQGVLGQSQHLCTVYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGENIYTD 99

Query: 78  HAFLLQLLFWFKQT-FRWVNAPPCDGCSNET----VGQGMGTPLPSEIQYGAARVELFRC 132
              + +LL +FKQ  F+W N P C+ C   T       G   P   E ++    VE+++C
Sbjct: 100 -YLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKC 158

Query: 133 KVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFS 192
             C  ITRFPRYNDP+KL+ET++GRCGEW N FTL  ++FG + R + +  DHVW E FS
Sbjct: 159 NRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFGLDVRYVWNREDHVWCEYFS 218

Query: 193 QSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRN 252
             L RW+H+D CE  +D+P +Y   WNKK++Y IA  KDGV DV+KRY  +       R+
Sbjct: 219 NFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQNE---LPRD 275

Query: 253 IATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMER 295
              E+ +  +   +T+  R S   + +  L  RD+ E+  + R
Sbjct: 276 QIKEEDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIR 318
>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
d1x3za1320 Peptide:N-glycanase 1, PNG1 {Baker's yeast(Sacchar 100.0
d2f4ma1287 Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) 100.0
d2g9ga1108 Peptide:N-glycanase, PNGase, C-terminal domain {Mo 99.26
d2q3za4316 Transglutaminase catalytic domain {Human (Homo sap 98.46
d1ex0a4320 Transglutaminase catalytic domain {Human (Homo sap 97.61
d1g0da4321 Transglutaminase catalytic domain {Red sea bream ( 97.6
d1vjja4321 Transglutaminase catalytic domain {Human (Homo sap 97.56
d2i74a1180 Peptide:N-glycanase, PNGase, C-terminal domain {Mo 97.08
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Transglutaminase core
domain: Peptide:N-glycanase 1, PNG1
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-89  Score=686.91  Aligned_cols=272  Identities=36%  Similarity=0.716  Sum_probs=258.2

Q ss_pred             hhhHHHHHhhhhhhc-hhcCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHhhc-CeeecC
Q 009800           20 SGQFEETVHPYISKV-LMYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-FRWVNA   97 (525)
Q Consensus        20 ~~~f~~~l~s~~~~v-~~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~WFK~~-F~wv~~   97 (525)
                      .++|.+.|.+.++++ .+||||.+|++||++|||++|+++|++..+++++..+++.++| .+|++||+|||++ |+|||+
T Consensus        41 ~~~~~~~~~~~~~~~~~~ye~~~~~~~al~~ipl~~i~~~~~~~~~~~~~~~~~~~y~d-~~l~eLl~wFk~~fF~wvn~  119 (320)
T d1x3za1          41 TNQFAQGVLGQSQHLCTVYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGENIYTD-YLVKELLRYFKQDFFKWCNK  119 (320)
T ss_dssp             HCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHSCHHHHHHHHHHHHHHCCSSSSCTHHHH-HHHHHHHHHHHHTTCEECSS
T ss_pred             hhHHHHHHHHHHHHHHHHhcCHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCccccHHH-HHHHHHHHHHHhhhceecCC
Confidence            356888888888765 6899999999999999999999999998888888888887765 6999999999997 799999


Q ss_pred             CCCCCCCCCcc----ccCCCCCChhhhccCCceEEEeeeCCCCcccccCCCCCHHHHHHhcCccchhhHHHHHHHHHHcC
Q 009800           98 PPCDGCSNETV----GQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFG  173 (525)
Q Consensus        98 P~C~~Cg~~t~----~~g~~~P~~~E~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~Ll~tR~GrCgE~A~~F~~l~RAlG  173 (525)
                      |||+.||++|.    .+|+++||++|..+||++||+|+|+.||+.+||||||+|.+||+||+||||||||||+++|||+|
T Consensus       120 p~C~~Cg~~t~~~~~~~g~~~p~~~e~~~~a~~vE~y~C~~C~~~~RFPRyn~p~~LL~tR~GRcgEwan~F~~~~ra~g  199 (320)
T d1x3za1         120 PDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFG  199 (320)
T ss_dssp             CCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHHHHHHHHHHHHHTTT
T ss_pred             CCCCcCCCCcccccccccCCCCCchhhcCCCCeEEEEECCCCCCccccCCcCCHHHHHhhcCcchHHHHHHHHHHHHHcC
Confidence            99999999874    56889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCeeEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhccc
Q 009800          174 YESRLILDFTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNI  253 (525)
Q Consensus       174 ~~aR~V~d~~dHvW~EVy~~~~~rWI~VDP~e~~~D~PllYe~gwgKklsYVIAFs~dgv~DVTrRYt~~~~~~~~RR~r  253 (525)
                      ++||||||++||+|+|||++.++||||||||++++|+|++|+.||+|+|+|||||+.|||+|||+||+.++.   .||++
T Consensus       200 ~~aR~V~~~~DhvW~EVys~~~kRWIhvDpce~~id~P~lye~gw~k~msYVIAf~~dgv~DVT~RY~~k~~---~rR~r  276 (320)
T d1x3za1         200 LDVRYVWNREDHVWCEYFSNFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQNE---LPRDQ  276 (320)
T ss_dssp             CCEEEEEETTTEEEEEEEETTTTEEEEEETTTTEESCTHHHHTTSCCCBCCEEEEETTEEEECHHHHCSSSB---CCCCS
T ss_pred             CceEEEEECCCceEEEEeecccCeEEEEcCCCCccCCcceeccCCCCceEEEEEecCCcceechhhhccccc---Ccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999863   58999


Q ss_pred             ccHHHHHHHHHHHHHHHHccCCHHHhhhhhhhcHHHHHHHHh
Q 009800          254 ATEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMER  295 (525)
Q Consensus       254 v~E~wl~~~L~~l~~~~r~~ls~~e~~~Le~Rd~~E~~EL~~  295 (525)
                      |+|+||..+|..+++++|.+++++++..|+.||..|..||.+
T Consensus       277 v~E~wl~~~L~~l~~~~r~~~s~~e~~~L~~RD~~E~~ELl~  318 (320)
T d1x3za1         277 IKEEDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIR  318 (320)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHhccCCHHHHHHHHHhHHHHHHHhcc
Confidence            999999999999999999999999999999999999999974
>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g9ga1 b.18.1.29 (A:454-561) Peptide:N-glycanase, PNGase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2q3za4 d.3.1.4 (A:146-461) Transglutaminase catalytic domain {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1g0da4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure
>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d2i74a1 b.18.1.29 (A:472-651) Peptide:N-glycanase, PNGase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure