Citrus Sinensis ID: 009808
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZQ70 | 513 | Probable WRKY transcripti | yes | no | 0.906 | 0.927 | 0.605 | 1e-155 | |
| Q9XI90 | 514 | Probable WRKY transcripti | no | no | 0.937 | 0.957 | 0.587 | 1e-154 | |
| Q93WV0 | 557 | Probable WRKY transcripti | no | no | 0.704 | 0.664 | 0.428 | 5e-76 | |
| Q93WU7 | 423 | Probable WRKY transcripti | no | no | 0.508 | 0.631 | 0.498 | 3e-73 | |
| O65590 | 568 | Probable WRKY transcripti | no | no | 0.655 | 0.605 | 0.415 | 2e-72 | |
| Q8S8P5 | 519 | Probable WRKY transcripti | no | no | 0.636 | 0.643 | 0.453 | 1e-71 | |
| Q9FG77 | 687 | Probable WRKY transcripti | no | no | 0.670 | 0.512 | 0.405 | 6e-69 | |
| Q9C5T3 | 309 | Probable WRKY transcripti | no | no | 0.489 | 0.831 | 0.416 | 1e-61 | |
| Q9SZ67 | 1895 | Probable WRKY transcripti | no | no | 0.527 | 0.146 | 0.459 | 1e-58 | |
| Q9ZUU0 | 429 | WRKY transcription factor | no | no | 0.432 | 0.529 | 0.462 | 1e-55 |
| >sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1 | Back alignment and function desciption |
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Score = 547 bits (1409), Expect = e-155, Method: Compositional matrix adjust.
Identities = 326/538 (60%), Positives = 378/538 (70%), Gaps = 62/538 (11%)
Query: 14 ASLKPSTTPSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSDDCKS 73
+ LK ST SRPTI+LPPR F E F+ G GFSPGPMTLVSN F+D D+ KS
Sbjct: 10 SKLKSSTGVSRPTISLPPRP-FGEMFFSG-------GVGFSPGPMTLVSNLFSDPDEFKS 61
Query: 74 FSQLLAGAMSSPAAG------------HLRPNFSEQAERGSGDAEAGDADFRFKQNRPAG 121
FSQLLAGAM+SPAA H P S GSG RFKQ+RP G
Sbjct: 62 FSQLLAGAMASPAAAAVAAAAVVATAHHQTPVSSVGDGGGSGGDVDP----RFKQSRPTG 117
Query: 122 LVIAQPPPIFAVPPGLSPATLLESPNF-GLFSPAQGAFGMTHQQALAQVTAQAAQAQS-H 179
L+I QPP +F VPPGLSPATLL+SP+F GLFSP QG FGMTHQQALAQVTAQA Q + H
Sbjct: 118 LMITQPPGMFTVPPGLSPATLLDSPSFFGLFSPLQGTFGMTHQQALAQVTAQAVQGNNVH 177
Query: 180 TQIP--AEYPSSLSSAPT----TSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSH 233
Q +EYPSS S+T++ S ++ Q+ + ++S +E+S+ S
Sbjct: 178 MQQSQQSEYPSSTQQQQQQQQQASLTEIPSFSS--APRSQIRASVQETSQGQRETSEISV 235
Query: 234 SDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQ 293
+ R Q + +DKPADD YNWRKYGQK VKGS+FPRSYYKCTHP CPVKKKVERSLDGQ
Sbjct: 236 FEHRSQPQN--ADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQ 293
Query: 294 VTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLK-EGAGYSMSKKDQESS 352
VTEIIYKGQHNH PQ KR + GS SS++A+Q + + + SK+DQE+S
Sbjct: 294 VTEIIYKGQHNHELPQ--KRGNNNGSCK-------SSDIANQFQTSNSSLNKSKRDQETS 344
Query: 353 QVTP-ENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTAS-HRTVTEPRII 410
QVT E +S SDSEEVG+AET+V E+ EDEPD KRR+TE+RVSEP AS HRTVTEPRII
Sbjct: 345 QVTTTEQMSEASDSEEVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRII 404
Query: 411 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITT 470
VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT C VRKHVERA+TDPKAV+TT
Sbjct: 405 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTT 464
Query: 471 YEGKHNHDVPAGKNSSHNTANSNASQIKP---HNTGT-NFGNNNQQPIARLRLKEEHL 524
YEGKHNHDVPA + SSH Q++P HNT T NF N+QQP+ARLRLKEE +
Sbjct: 465 YEGKHNHDVPAARTSSH--------QLRPNNQHNTSTVNF--NHQQPVARLRLKEEQI 512
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2 | Back alignment and function description |
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| >sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| 409923424 | 531 | WRKY transcription factor 2-4 [Dimocarpu | 0.980 | 0.969 | 0.740 | 0.0 | |
| 225469228 | 534 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.929 | 0.913 | 0.670 | 1e-174 | |
| 48686707 | 536 | DNA binding protein WRKY2 [Vitis vinifer | 0.929 | 0.910 | 0.668 | 1e-173 | |
| 224108942 | 499 | predicted protein [Populus trichocarpa] | 0.891 | 0.937 | 0.668 | 1e-166 | |
| 255542140 | 468 | WRKY transcription factor, putative [Ric | 0.870 | 0.976 | 0.672 | 1e-166 | |
| 4322940 | 528 | DNA-binding protein 2 [Nicotiana tabacum | 0.929 | 0.924 | 0.615 | 1e-164 | |
| 183979104 | 529 | DNA-binding protein [Vitis thunbergii] | 0.927 | 0.920 | 0.601 | 1e-161 | |
| 297844302 | 510 | WRKY DNA-binding protein 4 [Arabidopsis | 0.937 | 0.964 | 0.591 | 1e-157 | |
| 164666156 | 490 | transcription factor WRKY2 [Capsicum ann | 0.904 | 0.969 | 0.579 | 1e-155 | |
| 224101411 | 492 | predicted protein [Populus trichocarpa] | 0.895 | 0.955 | 0.633 | 1e-155 |
| >gi|409923424|gb|AEO31507.2| WRKY transcription factor 2-4 [Dimocarpus longan] | Back alignment and taxonomy information |
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Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/539 (74%), Positives = 440/539 (81%), Gaps = 24/539 (4%)
Query: 1 MAGNEDRASTASSASLKPSTT-PSRPTITLPPRASFTESLFNNNGPGS----GFGFGFSP 55
MA NE+R S S KP+T P RPTIT PPRA+F E LFNN G G+ G G GFSP
Sbjct: 1 MAENEERPSAPS----KPTTAQPRRPTITPPPRAAFAEGLFNN-GSGTVSSTGLGMGFSP 55
Query: 56 GPMTLVSNFFADSDDCKSFSQLLAGAMSSPA--AGHLRPNFSEQ-AERGSGD-AEAGDAD 111
GPMTLVS+FFA+S+DCKSFSQLLAGAM+SPA AGH+ PNF EQ E SGD A G+ D
Sbjct: 56 GPMTLVSSFFAESEDCKSFSQLLAGAMASPASAAGHMGPNFLEQQVEISSGDDAVVGEGD 115
Query: 112 FRFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTA 171
FRFKQ+RPAGLVIAQ PIF+VPPGLSPATLLESP+ G+ SPAQG FGMTHQQALAQVTA
Sbjct: 116 FRFKQSRPAGLVIAQQQPIFSVPPGLSPATLLESPSLGMLSPAQGPFGMTHQQALAQVTA 175
Query: 172 QAAQAQSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDF 231
QAAQAQSH QI A++ SS SSAP L +T T+ ++ + + +E+SDF
Sbjct: 176 QAAQAQSHIQIQADHVSSFSSAPGNIYGTNVVLYYHTATDATLSDRL---QIGDEENSDF 232
Query: 232 SHSDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLD 291
SHS+QR Q SSY DKPADD YNWRKYGQK VKGSEFPRSYYKCTHP CPVKKKVERSLD
Sbjct: 233 SHSNQRSQPSSYTVDKPADDSYNWRKYGQKQVKGSEFPRSYYKCTHPGCPVKKKVERSLD 292
Query: 292 GQVTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLKEG------AGYSMS 345
GQVTEIIY+GQHNH PP +N+R KD GSLNG+ NNQGSSELASQ + G G+SMS
Sbjct: 293 GQVTEIIYRGQHNHRPP-TNRRGKDTGSLNGSSNNQGSSELASQFQSGNLNKSKEGHSMS 351
Query: 346 KKDQESSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVT 405
KKDQESSQVTPEN+SGTSDSEEV DAE A+ KDEDEPD KR++TE+RVSE +SHRTVT
Sbjct: 352 KKDQESSQVTPENLSGTSDSEEVDDAEIAMDAKDEDEPDPKRQNTEVRVSEAASSHRTVT 411
Query: 406 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPK 465
EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT GCNVRKHVERAS+DPK
Sbjct: 412 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASSDPK 471
Query: 466 AVITTYEGKHNHDVPAGKNSSHNTANSNASQIKPHNTGTNFGNNNQQPIARLRLKEEHL 524
AVITTYEGKHNHDVPA K SSH+TANSNASQIKP N T+FGNNNQQP+ARLRLKEEHL
Sbjct: 472 AVITTYEGKHNHDVPAAKTSSHSTANSNASQIKPQNAKTDFGNNNQQPVARLRLKEEHL 530
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Source: Dimocarpus longan Species: Dimocarpus longan Genus: Dimocarpus Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225469228|ref|XP_002264243.1| PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 3 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|48686707|gb|AAT46067.1| DNA binding protein WRKY2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224108942|ref|XP_002315024.1| predicted protein [Populus trichocarpa] gi|222864064|gb|EEF01195.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255542140|ref|XP_002512134.1| WRKY transcription factor, putative [Ricinus communis] gi|223549314|gb|EEF50803.1| WRKY transcription factor, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|4322940|gb|AAD16139.1| DNA-binding protein 2 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|183979104|emb|CAP08301.1| DNA-binding protein [Vitis thunbergii] | Back alignment and taxonomy information |
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| >gi|297844302|ref|XP_002890032.1| WRKY DNA-binding protein 4 [Arabidopsis lyrata subsp. lyrata] gi|297335874|gb|EFH66291.1| WRKY DNA-binding protein 4 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|164666156|gb|ABA56495.2| transcription factor WRKY2 [Capsicum annuum] | Back alignment and taxonomy information |
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| >gi|224101411|ref|XP_002312267.1| predicted protein [Populus trichocarpa] gi|222852087|gb|EEE89634.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| TAIR|locus:2063835 | 513 | WRKY3 "WRKY DNA-binding protei | 0.92 | 0.941 | 0.544 | 5.6e-132 | |
| TAIR|locus:2014799 | 514 | WRKY4 "WRKY DNA-binding protei | 0.940 | 0.961 | 0.536 | 1.7e-130 | |
| TAIR|locus:2133852 | 557 | WRKY20 [Arabidopsis thaliana ( | 0.546 | 0.515 | 0.515 | 1.5e-79 | |
| TAIR|locus:2057212 | 519 | WRKY33 "AT2G38470" [Arabidopsi | 0.725 | 0.734 | 0.435 | 6.3e-76 | |
| TAIR|locus:2177596 | 687 | WRKY2 "WRKY DNA-binding protei | 0.241 | 0.184 | 0.625 | 3.7e-72 | |
| TAIR|locus:2169354 | 309 | WRKY26 "WRKY DNA-binding prote | 0.226 | 0.385 | 0.559 | 1.5e-68 | |
| TAIR|locus:2131503 | 568 | WRKY34 "WRKY DNA-binding prote | 0.205 | 0.190 | 0.620 | 2.5e-68 | |
| TAIR|locus:2118116 | 1895 | WRKY19 [Arabidopsis thaliana ( | 0.457 | 0.126 | 0.492 | 1e-60 | |
| TAIR|locus:2060805 | 393 | WRKY25 "WRKY DNA-binding prote | 0.539 | 0.720 | 0.396 | 8.6e-56 | |
| TAIR|locus:2045049 | 487 | ZAP1 "zinc-dependent activator | 0.28 | 0.301 | 0.439 | 3.3e-54 |
| TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
Identities = 289/531 (54%), Positives = 339/531 (63%)
Query: 14 ASLKPSTTPSRPTITLPPRASFTESLXXXXXXXXXXXXXXXXXXMTLVSNFFADSDDCKS 73
+ LK ST SRPTI+LPPR F E MTLVSN F+D D+ KS
Sbjct: 10 SKLKSSTGVSRPTISLPPRP-FGEMFFSGGVGFSPGP-------MTLVSNLFSDPDEFKS 61
Query: 74 FSQLLAGAMSSPAAGHLRP--------NFSEQAERGSGDAEAGDADFRFKQNRPAGLVIA 125
FSQLLAGAM+SPAA + + + + G G GD D RFKQ+RP GL+I
Sbjct: 62 FSQLLAGAMASPAAAAVAAAAVVATAHHQTPVSSVGDGGGSGGDVDPRFKQSRPTGLMIT 121
Query: 126 QPPPIFAVPPGLSPATLLESPNF-GLFSPAQGAFGMTHXXXXXXXXXXXXXXXS-HTQIP 183
QPP +F VPPGLSPATLL+SP+F GLFSP QG FGMTH + H Q
Sbjct: 122 QPPGMFTVPPGLSPATLLDSPSFFGLFSPLQGTFGMTHQQALAQVTAQAVQGNNVHMQQS 181
Query: 184 --AEYPSSLSSAPT----TSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQR 237
+EYPSS S+T++ S ++ Q+ + ++S +E+S+ S + R
Sbjct: 182 QQSEYPSSTQQQQQQQQQASLTEIPSFSS--APRSQIRASVQETSQGQRETSEISVFEHR 239
Query: 238 PQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEI 297
Q + +DKPADD YNWRKYGQK VKGS+FPRSYYKCTHP CPVKKKVERSLDGQVTEI
Sbjct: 240 SQPQN--ADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEI 297
Query: 298 IYKGQHNHPPPQSNKRAKDAXXXXXXXXXXXXXXXASQLKEGAGYSMSKKDQESSQVTP- 356
IYKGQHNH PQ KR + S L + SK+DQE+SQVT
Sbjct: 298 IYKGQHNHELPQ--KRGNNNGSCKSSDIANQFQTSNSSLNK------SKRDQETSQVTTT 349
Query: 357 ENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTAS-HRTVTEPRIIVQTTS 415
E +S SDSEEVG+AET+V E+ EDEPD KRR+TE+RVSEP AS HRTVTEPRIIVQTTS
Sbjct: 350 EQMSEASDSEEVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTS 409
Query: 416 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKH 475
EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT C VRKHVERA+TDPKAV+TTYEGKH
Sbjct: 410 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKH 469
Query: 476 NHDVPAGKXXXXXXXXXXXXQIKPHXXXXXXXXXXXX--PIARLRLKEEHL 524
NHDVPA + Q++P+ P+ARLRLKEE +
Sbjct: 470 NHDVPAARTSSH--------QLRPNNQHNTSTVNFNHQQPVARLRLKEEQI 512
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| TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZQ70 | WRKY3_ARATH | No assigned EC number | 0.6059 | 0.9066 | 0.9278 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pm.C_LG_X0626 | hypothetical protein (500 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 525 | |||
| pfam03106 | 60 | pfam03106, WRKY, WRKY DNA -binding domain | 1e-38 | |
| pfam03106 | 60 | pfam03106, WRKY, WRKY DNA -binding domain | 2e-37 | |
| smart00774 | 59 | smart00774, WRKY, DNA binding domain | 4e-36 | |
| smart00774 | 59 | smart00774, WRKY, DNA binding domain | 3e-33 |
| >gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain | Back alignment and domain information |
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Score = 134 bits (340), Expect = 1e-38
Identities = 41/59 (69%), Positives = 49/59 (83%)
Query: 420 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKHNHD 478
LDDGY WRKYGQK VKG+P+PRSYY+CT+ GC V+K VER+S DP+ V TYEG+HNH
Sbjct: 1 LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59
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Length = 60 |
| >gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain | Back alignment and domain information |
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| >gnl|CDD|214815 smart00774, WRKY, DNA binding domain | Back alignment and domain information |
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| >gnl|CDD|214815 smart00774, WRKY, DNA binding domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| PF03106 | 60 | WRKY: WRKY DNA -binding domain; InterPro: IPR00365 | 99.97 | |
| smart00774 | 59 | WRKY DNA binding domain. The WRKY domain is a DNA | 99.96 | |
| PF03106 | 60 | WRKY: WRKY DNA -binding domain; InterPro: IPR00365 | 99.95 | |
| smart00774 | 59 | WRKY DNA binding domain. The WRKY domain is a DNA | 99.94 | |
| PF04500 | 62 | FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 | 93.6 | |
| PF03101 | 91 | FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 | 91.18 | |
| PF04500 | 62 | FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 | 88.68 | |
| PF03101 | 91 | FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 | 84.99 |
| >PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif | Back alignment and domain information |
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Probab=99.97 E-value=7.1e-32 Score=215.53 Aligned_cols=59 Identities=68% Similarity=1.362 Sum_probs=52.7
Q ss_pred CcccchhhhcccccccCCCCCcccccccCCCCCccceeeecCCCCCEEEEEEecccCCC
Q 009808 420 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKHNHD 478 (525)
Q Consensus 420 ~dDGy~WRKYGQK~VkGn~~PRsYYrCt~~gC~vrK~Ver~~~D~~~~~ttY~G~HnHd 478 (525)
++|||+|||||||.|+|+++||+||||+..+|+|+|+|||+.+|+.+|+|||+|+|||+
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 58999999999999999999999999999999999999999999999999999999996
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The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A. |
| >smart00774 WRKY DNA binding domain | Back alignment and domain information |
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| >PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif | Back alignment and domain information |
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| >smart00774 WRKY DNA binding domain | Back alignment and domain information |
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| >PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
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| >PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants | Back alignment and domain information |
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| >PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
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| >PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 525 | ||||
| 1wj2_A | 78 | Solution Structure Of The C-Terminal Wrky Domain Of | 6e-36 | ||
| 2ayd_A | 76 | Crystal Structure Of The C-Terminal Wrky Domainof A | 1e-26 |
| >pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78 | Back alignment and structure |
|
| >pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78 | Back alignment and structure |
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Score = 161 bits (409), Expect = 1e-48
Identities = 66/77 (85%), Positives = 70/77 (90%)
Query: 405 TEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDP 464
+ VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT GC VRKHVERA+TDP
Sbjct: 2 SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61
Query: 465 KAVITTYEGKHNHDVPA 481
KAV+TTYEGKHNHD+PA
Sbjct: 62 KAVVTTYEGKHNHDLPA 78
|
| >1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78 | Back alignment and structure |
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| >2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76 | Back alignment and structure |
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| >2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76 | Back alignment and structure |
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| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| 2ayd_A | 76 | WRKY transcription factor 1; beta strands, zinc fi | 100.0 | |
| 1wj2_A | 78 | Probable WRKY transcription factor 4; DNA-binding | 100.0 | |
| 2ayd_A | 76 | WRKY transcription factor 1; beta strands, zinc fi | 99.95 | |
| 1wj2_A | 78 | Probable WRKY transcription factor 4; DNA-binding | 99.95 | |
| 2rpr_A | 87 | Flywch-type zinc finger-containing protein 1; flyw | 80.44 |
| >2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} | Back alignment and structure |
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Probab=100.00 E-value=2.8e-37 Score=255.88 Aligned_cols=76 Identities=66% Similarity=1.282 Sum_probs=73.7
Q ss_pred CcEEEeeccccccCcccchhhhcccccccCCCCCcccccccCCCCCccceeeecCCCCCEEEEEEecccCCCCCCC
Q 009808 407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKHNHDVPAG 482 (525)
Q Consensus 407 prvvV~t~se~d~~dDGy~WRKYGQK~VkGn~~PRsYYrCt~~gC~vrK~Ver~~~D~~~~~ttY~G~HnHd~P~~ 482 (525)
.||+|+|.+++++++|||+|||||||.|||++|||+|||||.+||+|+|||||+.+|+.+|+|||+|+|||++|.+
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~ 76 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG 76 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999964
|
| >1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* | Back alignment and structure |
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| >2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} | Back alignment and structure |
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| >1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* | Back alignment and structure |
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| >2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 525 | ||||
| d1wj2a_ | 71 | g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr | 7e-38 | |
| d1wj2a_ | 71 | g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr | 4e-28 |
| >d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71 | Back information, alignment and structure |
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class: Small proteins fold: WRKY DNA-binding domain superfamily: WRKY DNA-binding domain family: WRKY DNA-binding domain domain: WRKY DNA-binding protein 4 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 131 bits (331), Expect = 7e-38
Identities = 66/71 (92%), Positives = 69/71 (97%)
Query: 411 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITT 470
VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT GC VRKHVERA+TDPKAV+TT
Sbjct: 1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60
Query: 471 YEGKHNHDVPA 481
YEGKHNHD+PA
Sbjct: 61 YEGKHNHDLPA 71
|
| >d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| d1wj2a_ | 71 | WRKY DNA-binding protein 4 {Thale cress (Arabidops | 100.0 | |
| d1wj2a_ | 71 | WRKY DNA-binding protein 4 {Thale cress (Arabidops | 99.95 |
| >d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: Small proteins fold: WRKY DNA-binding domain superfamily: WRKY DNA-binding domain family: WRKY DNA-binding domain domain: WRKY DNA-binding protein 4 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.7e-36 Score=244.96 Aligned_cols=71 Identities=93% Similarity=1.528 Sum_probs=69.0
Q ss_pred EeeccccccCcccchhhhcccccccCCCCCcccccccCCCCCccceeeecCCCCCEEEEEEecccCCCCCC
Q 009808 411 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCNVRKHVERASTDPKAVITTYEGKHNHDVPA 481 (525)
Q Consensus 411 V~t~se~d~~dDGy~WRKYGQK~VkGn~~PRsYYrCt~~gC~vrK~Ver~~~D~~~~~ttY~G~HnHd~P~ 481 (525)
|+|.+|++++||||+|||||||.|||++|||+||||+.+||+|+|+|||+.+|+.+|+|||+|+|||+.|+
T Consensus 1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps 71 (71)
T d1wj2a_ 1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 71 (71)
T ss_dssp CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999884
|
| >d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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