Citrus Sinensis ID: 009817
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 524 | 2.2.26 [Sep-21-2011] | |||||||
| Q00081 | 470 | Glucose-1-phosphate adeny | N/A | no | 0.889 | 0.991 | 0.786 | 0.0 | |
| P55231 | 521 | Glucose-1-phosphate adeny | yes | no | 0.986 | 0.992 | 0.715 | 0.0 | |
| Q9SIK1 | 523 | Probable glucose-1-phosph | no | no | 0.944 | 0.946 | 0.729 | 0.0 | |
| P55233 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.979 | 0.982 | 0.649 | 0.0 | |
| P55230 | 518 | Glucose-1-phosphate adeny | no | no | 0.980 | 0.992 | 0.642 | 0.0 | |
| P55242 | 519 | Glucose-1-phosphate adeny | N/A | no | 0.980 | 0.990 | 0.642 | 0.0 | |
| P12299 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.874 | 0.877 | 0.664 | 0.0 | |
| P55229 | 522 | Glucose-1-phosphate adeny | no | no | 0.839 | 0.842 | 0.672 | 0.0 | |
| P30524 | 523 | Glucose-1-phosphate adeny | N/A | no | 0.874 | 0.875 | 0.662 | 0.0 | |
| P55243 | 483 | Glucose-1-phosphate adeny | N/A | no | 0.906 | 0.983 | 0.625 | 1e-177 |
| >sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/469 (78%), Positives = 420/469 (89%), Gaps = 3/469 (0%)
Query: 59 KVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
K+KPGVAY+V+T+++ + + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATP
Sbjct: 2 KIKPGVAYSVITTENDTQTVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATP 61
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVL 178
AVPV GCYRLIDIPMSNCINS INKIFVLTQ+NSA LNRHIARTYFGNG +FGDGFVEVL
Sbjct: 62 AVPVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAPLNRHIARTYFGNGVSFGDGFVEVL 121
Query: 179 AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238
AATQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+
Sbjct: 122 AATQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHI 181
Query: 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298
DR+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G +LKAMQVDT+L+G SPQ+
Sbjct: 182 DRNADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQD 241
Query: 299 ARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDI 358
A+K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDI
Sbjct: 242 AKKSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDI 301
Query: 359 GTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC 418
GTIKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+C
Sbjct: 302 GTIKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDC 361
Query: 419 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 478
+VEHSIVGERSRLD GVELKDT M+GADYYQTESEIASLLAEGKVPIG+G NTKIR CII
Sbjct: 362 SVEHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCII 421
Query: 479 DKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
DKN KIGK+V I+NKD EADRPE GFYIRSGI II+EKATI DG VI
Sbjct: 422 DKNAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIILEKATIRDGTVI 470
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/528 (71%), Positives = 431/528 (81%), Gaps = 11/528 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEK 59
MDSCC T V A K K +N GE+I+GSV K L ++K R+ K
Sbjct: 1 MDSCC-NFSLGTKTVLA-KDSFKNVENKFLGEKIKGSV-----LKPFSSDLSSKKFRNRK 53
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
++PGVAYA+ TSK+ E + P ERRR DPKNVAAIILGGG G KLFPLT RAATPA
Sbjct: 54 LRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPA 113
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYR+IDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVEVLA
Sbjct: 114 VPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVEVLA 173
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q HVD
Sbjct: 174 ATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVD 233
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
ADIT+SCA V ESRAS+YGLV ID GR+ F+EKP+G +LK+MQ DT++ G S QEA
Sbjct: 234 SKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEA 293
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWEDIG
Sbjct: 294 AKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIG 353
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFYEAN+AL +E P F FYD TPFYTSPRFLPPTK + CRI +++ISHGCFL EC+
Sbjct: 354 TIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECS 413
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
++ SI+GERSRLDYGVEL+DT+MLGAD YQTESEIASLLAEG VPIG+GR+TKIR CIID
Sbjct: 414 IQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKCIID 473
Query: 480 KNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
KN KIGK+VVI+NKD EADRPE GFYIRSGIT+++EKATI+DG VI
Sbjct: 474 KNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/503 (72%), Positives = 427/503 (84%), Gaps = 8/503 (1%)
Query: 26 DNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPR 84
+N +GE+ +N+G K+ L ++K R++K K GV YAV TS +P + MT+
Sbjct: 25 ENRFYGEK----NNNNGLCKRFGSDLGSKKFRNQKFKHGVVYAVATSDNPKKAMTVKTSM 80
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
ERR+VDP+NVAAIILGGG G KLFPLT+RAATPAVPV GCYRLIDIPMSNCINS INKI
Sbjct: 81 FERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKI 140
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
FVLTQFNSASLNRH+ARTYFGNG NFG GFVEVLAATQTPGE+GK WFQGTADAVR+F W
Sbjct: 141 FVLTQFNSASLNRHLARTYFGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLW 200
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
VFEDAKNRNIEN+ IL GDHLYRM+YMDF+QSHVD +ADIT+SCA V ESRAS++GLVKI
Sbjct: 201 VFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKI 260
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D GR+ F+EKP+G +LK+MQ DT++LG S QEA PY+ASMGVY FK + L LL
Sbjct: 261 DRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTR 320
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
+YP+SNDFGSE+IPAAI +HDVQ YIFRDYWEDIGTIK+FYEAN+AL +E P F FYDP+
Sbjct: 321 QYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPE 380
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
TPFYTSPRFLPPTK + CR+ D+IISHGCFLREC+V+ SI+GERSRLDYGVEL+DT+MLG
Sbjct: 381 TPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLG 440
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK---DEADRPEL 501
ADYYQTESEIASLLAEGKVPIG+G++TKIR CIIDKN KIGK+V+I+NK EADRPE
Sbjct: 441 ADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEE 500
Query: 502 GFYIRSGITIIMEKATIEDGMVI 524
GFYIRSGIT+I+EKATI+DG VI
Sbjct: 501 GFYIRSGITVIVEKATIQDGTVI 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/533 (64%), Positives = 421/533 (78%), Gaps = 20/533 (3%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSL-KAEKRDEK 59
MD+ + N H+ +++G GERI S+ K L+ + E +
Sbjct: 1 MDASAAAINVNAHL-------TEVGKKRFLGERISQSLKG----KDLRALFSRTESKGRN 49
Query: 60 V-KPGVAYAVMTS---KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRA 115
V KPGVA++V+TS + E + P E + DPKNVAAI+LGGGAGT+LFPLT R
Sbjct: 50 VNKPGVAFSVLTSDFNQSVKESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRR 109
Query: 116 ATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGF 174
A PAVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+ARTY FG+G NFGDGF
Sbjct: 110 AKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGF 169
Query: 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFI 234
VEV AATQTPGESGK WFQGTADAVRQF W FED+K++++E++ IL GDHLYRMDYM F
Sbjct: 170 VEVFAATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFW 229
Query: 235 QSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGF 294
Q H+D +ADIT+SC + +SRASDYGL+KID+ GRI FAEKP G++L AMQVDT++LG
Sbjct: 230 QKHIDTNADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGL 289
Query: 295 SPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDY 354
S EA PY+ASMGVYVF+ DVL +LL +YP+SNDFGSEIIP+A+ E +VQAY+F DY
Sbjct: 290 SDLEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDY 349
Query: 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCF 414
WEDIGTIKSF+++N+ALT++ P F FYDPKTPFYTS RFLPPTK+D C+I D+I+SHGCF
Sbjct: 350 WEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHGCF 409
Query: 415 LRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474
L+E +++HSIVG RSRL+ GVE +DT+M+GADYYQTESEIASLLAEGKVP+GVG+NTKI+
Sbjct: 410 LQESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIK 469
Query: 475 NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
NCIIDKN KIGKDVVI N D EADRP GFYIRSGITII++ ATI+DG+VI
Sbjct: 470 NCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/528 (64%), Positives = 418/528 (79%), Gaps = 14/528 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
M+SC ++ N + +A WG ++ N T +L+ + + +K+
Sbjct: 1 MESCFPAMKLNQCTFGLNNEIVSERVSAFWGTQVVKP--NHLRTTKLRSAPQ-----KKI 53
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
+ + +V+T E P L + DPKNVA+IILGGGAGT+LFPLT + A PAV
Sbjct: 54 QTNLIRSVLTPFVDQESHE---PLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKPAV 110
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLA 179
P+ GCYRLIDIPMSNCINSGI KIF+LTQFNS SLNRH++RTY FGNG NFGDGFVEVLA
Sbjct: 111 PIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLA 170
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQT G++GK WFQGTADAVRQF WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q H++
Sbjct: 171 ATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIE 230
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
+ADIT+SC + ESRASD+GL+KID G+I QF+EKP G +LKAMQVDTS+LG P+EA
Sbjct: 231 SNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEA 290
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
+ PY+ASMGVYVF+K+VL KLLR YPTSNDFGSEIIP A+ EH+VQA++F DYWEDIG
Sbjct: 291 AESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIG 350
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TI SF++AN+ALT++ P F FYD KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLREC+
Sbjct: 351 TIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRECS 410
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
V+HSIVG RSRL+ GVEL+DT+M+GAD+YQTE+EIASLLAEGKVP+GVG+NTKI+NCIID
Sbjct: 411 VQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNCIID 470
Query: 480 KNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
KN KIGK+VVI N D E DRPE GF+IRSGIT++++ ATI DG+ I
Sbjct: 471 KNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDGLHI 518
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/529 (64%), Positives = 403/529 (76%), Gaps = 15/529 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGS-VSNDGCTKQLKKSLKAEKRDEK 59
MD+ C ++ +V ++A WGE+I G + N G + KS ++R
Sbjct: 1 MDALCASMKGTAQLVAICNQ-----ESAFWGEKISGRRLINKGFGVRSCKSFTTQQRGRN 55
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERR-RVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
V P AV+T E++ E + DPK VA++ILGGG GT+LFPLT R A P
Sbjct: 56 VTP----AVLTRDINKEMLPFEESMFEEQPTADPKAVASVILGGGVGTRLFPLTSRRAKP 111
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVL 178
AVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+A FGNG FGDGFVEVL
Sbjct: 112 AVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLATYNFGNGVGFGDGFVEVL 171
Query: 179 AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238
A TQTPG+ K WFQ ADAVR+F WVFE+ KN+N+E++ IL GDHLYRM+YMDF+Q H+
Sbjct: 172 AGTQTPGDGRKMWFQA-ADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQKHI 230
Query: 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298
D +ADIT+SC + + RASD+GL+KID G I QFAEKP G LKAMQVDTS+LG S QE
Sbjct: 231 DTNADITVSCVPMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSILGLSEQE 290
Query: 299 ARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDI 358
A PY+ASMGVYVFK DVL LL+ YP+ NDFGSEIIP+A+ +H+VQAY+F DYWEDI
Sbjct: 291 ASNFPYIASMGVYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDI 350
Query: 359 GTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC 418
GT+KSF++AN+ALTK+ P F F DPKTPFYTS RFLPPTK+D RI DAIISHGCFLREC
Sbjct: 351 GTVKSFFDANLALTKQPPKFDFNDPKTPFYTSARFLPPTKVDKSRIVDAIISHGCFLREC 410
Query: 419 TVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 478
++HSIVG RSRLDYGVE KDT+M+GADYYQTE EIASLLAEGKVPIGVG NTKI+NCII
Sbjct: 411 NIQHSIVGVRSRLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPNTKIQNCII 470
Query: 479 DKNVKIGKDVVIVNK---DEADRPELGFYIRSGITIIMEKATIEDGMVI 524
DKN KIGKDVVI+NK +EADR GFYIRSGIT+IM+ ATI+DG VI
Sbjct: 471 DKNAKIGKDVVILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/465 (66%), Positives = 371/465 (79%), Gaps = 7/465 (1%)
Query: 65 AYAVMTS-KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA 123
A V+TS P + + L R DP VAA+ILGGG GT+LFPLT ATPAVP+
Sbjct: 60 AQCVLTSDASPADTLVLRT-SFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIG 118
Query: 124 GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 183
GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ
Sbjct: 119 GCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQM 178
Query: 184 PGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDA 242
PGE+ WF+GTADAVR+F WV ED KN++IE++ IL GD LYRMDYM+ +Q HVD +A
Sbjct: 179 PGEAA-GWFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNA 237
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302
DIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+ + K
Sbjct: 238 DITLSCAPVGESRASEYGLVKFDSSGRVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKY 297
Query: 303 PYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIK 362
PY+ASMGVYVFK+DVL LL+ RY +DFGSEI+P A+ +H+VQAY+F DYWEDIGTI+
Sbjct: 298 PYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIR 357
Query: 363 SFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEH 422
SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFLREC +EH
Sbjct: 358 SFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEH 417
Query: 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482
SI+G RSRL+ G ELK+ +M+GAD Y+TE EI+ L++EGKVPIGVG NTKI NCIID N
Sbjct: 418 SIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNA 477
Query: 483 KIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
+IG+DVVI NK+ EADRPE G+YIRSGI +I + ATI+DG V+
Sbjct: 478 RIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/443 (67%), Positives = 363/443 (81%), Gaps = 3/443 (0%)
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
LE + DP+ VA+IILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+
Sbjct: 80 LETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKV 139
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
++LTQ+NSASLNRH+AR Y NG FGDG+VEVLAATQTPGESGK WFQGTADAVRQF W
Sbjct: 140 YILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHW 199
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
+FEDA++++IE+V IL GDHLYRMDYMDFIQ H ADI+ISC + + RASD+GL+KI
Sbjct: 200 LFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKI 259
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D+ GR+ F+EKP G +LKAM VDT++LG S +EA K PY+ASMGVYVFKK++L LLRW
Sbjct: 260 DDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRW 319
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
R+PT+NDFGSEIIP + E V AY+F DYWEDIGTI+SF+EAN+ALT+ AF FYD
Sbjct: 320 RFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAA 379
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
P YTS R LPP+KIDN ++ D+IISHG FL C +EHSIVG RSR+ V+LKDTVMLG
Sbjct: 380 KPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLG 439
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD---EADRPEL 501
ADYY+TE+E+A+LLAEG VPIG+G NTKI+ CIIDKN ++GK+V+I N + EADR
Sbjct: 440 ADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSD 499
Query: 502 GFYIRSGITIIMEKATIEDGMVI 524
GFYIRSGIT+I++ + I+DG+VI
Sbjct: 500 GFYIRSGITVILKNSVIKDGVVI 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2 | Back alignment and function description |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/465 (66%), Positives = 371/465 (79%), Gaps = 7/465 (1%)
Query: 65 AYAVMTS-KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA 123
A V+TS P + + L R DP VAA+ILGGG GT+LFPLT ATPAVP+
Sbjct: 61 AQCVLTSDASPADTLVLRT-SFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIG 119
Query: 124 GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 183
GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ
Sbjct: 120 GCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQM 179
Query: 184 PGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDA 242
PGE+ WF+GTADAVR+F WV ED K+++IE++ IL GD LYRMDYM+ +Q HVD +A
Sbjct: 180 PGEAA-GWFRGTADAVRKFIWVLEDYYKHKSIEHILILSGDQLYRMDYMELVQKHVDDNA 238
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302
DIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+ + K
Sbjct: 239 DITLSCAPVGESRASEYGLVKFDSSGRVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKY 298
Query: 303 PYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIK 362
PY+ASMGVYVFK+DVL LL+ RY +DFGSEI+P A+ +H+VQAY+F DYWEDIGTI+
Sbjct: 299 PYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIR 358
Query: 363 SFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEH 422
SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFLREC +EH
Sbjct: 359 SFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEH 418
Query: 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482
SI+G RSRL+ G ELK+ +M+GAD Y+TE EI+ L++EGKVPIGVG NTKI NCIID N
Sbjct: 419 SIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNA 478
Query: 483 KIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
+IG+DVVI NK+ EADRPE G+YIRSGI +I + ATI+DG V+
Sbjct: 479 RIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 621 bits (1601), Expect = e-177, Method: Compositional matrix adjust.
Identities = 304/486 (62%), Positives = 375/486 (77%), Gaps = 11/486 (2%)
Query: 45 KQLKKSLKAEKRDEKVKPGVAYAVMTSKHPNEVMTLAPPRLER-RRVDPKNVAAIILGGG 103
K+LK + K + R VKP + ++ T + LER ++ D + V AIILGGG
Sbjct: 3 KKLKYT-KFQLRSNVVKPNICMSLTTDIAGEAKLK----DLERQKKGDARTVVAIILGGG 57
Query: 104 AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY 163
AGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+++LTQFNSASLNRHIAR Y
Sbjct: 58 AGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAY 117
Query: 164 -FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCG 222
FGNG F G+VEVLAATQTPGE GK WFQGTA AVRQF W+FEDA++++IE+V IL G
Sbjct: 118 NFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLFEDARSKDIEDVLILSG 177
Query: 223 DHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANL 282
DHLYRMDY+ F+QSH ADITIS + +SRASD+GL+KID+ GR+ F+EKP G +L
Sbjct: 178 DHLYRMDYLHFVQSHRQSGADITISSLPIDDSRASDFGLMKIDDTGRVMSFSEKPKGDDL 237
Query: 283 KAMQVDTSLLGFSPQEARKCPYVASMG-VYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI 341
KAM VDT++LG SP+EA++ PY+AS+G VYVFKKD+L LLRWR+PT+NDFGSEIIPA+
Sbjct: 238 KAMAVDTTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWRFPTANDFGSEIIPAST 297
Query: 342 MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN 401
E V+AY+F DYWEDIGTI+SF+ AN+ALT+ P F FYD P YTS R LPP+ IDN
Sbjct: 298 KEFCVKAYLFNDYWEDIGTIRSFFRANLALTEHPPRFSFYDATKPIYTSRRNLPPSAIDN 357
Query: 402 CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461
+I D+I+SHG FL C VEHS+VG RSR+ V LKDTVMLGADYY+T++EI S LAEG
Sbjct: 358 SKIVDSIVSHGIFLTNCFVEHSVVGIRSRIGTNVHLKDTVMLGADYYETDAEIRSQLAEG 417
Query: 462 KVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATI 518
KVP+G+G NT+I++CIIDKN +IGK+VVI N + EADR GFY+ SGIT+I + +TI
Sbjct: 418 KVPLGIGENTRIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYMASGITVISKNSTI 477
Query: 519 EDGMVI 524
DG VI
Sbjct: 478 PDGTVI 483
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 524 | ||||||
| 194595409 | 527 | ADP-glucose pyrophosphorylase large subu | 1.0 | 0.994 | 0.988 | 0.0 | |
| 5917791 | 531 | ADP-glucose pyrophosphorylase large subu | 0.992 | 0.979 | 0.955 | 0.0 | |
| 255543725 | 531 | glucose-1-phosphate adenylyltransferase, | 1.0 | 0.986 | 0.800 | 0.0 | |
| 224103389 | 527 | predicted protein [Populus trichocarpa] | 1.0 | 0.994 | 0.789 | 0.0 | |
| 224080375 | 526 | predicted protein [Populus trichocarpa] | 0.998 | 0.994 | 0.798 | 0.0 | |
| 225428422 | 527 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.994 | 0.770 | 0.0 | |
| 297744412 | 517 | unnamed protein product [Vitis vinifera] | 0.980 | 0.994 | 0.757 | 0.0 | |
| 356545193 | 528 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.992 | 0.767 | 0.0 | |
| 83630945 | 524 | ADPglucose pyrophosphorylase large subun | 0.994 | 0.994 | 0.747 | 0.0 | |
| 356508352 | 519 | PREDICTED: glucose-1-phosphate adenylylt | 0.982 | 0.992 | 0.759 | 0.0 |
| >gi|194595409|gb|ACF77017.1| ADP-glucose pyrophosphorylase large subunit [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 1082 bits (2798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/527 (98%), Positives = 523/527 (99%), Gaps = 3/527 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV
Sbjct: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV
Sbjct: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA
Sbjct: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR
Sbjct: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR
Sbjct: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
KCPYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT
Sbjct: 301 KCPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAIISHGCFLRECTV
Sbjct: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAIISHGCFLRECTV 420
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
EHSIVGERSR+DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK
Sbjct: 421 EHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
Query: 481 NVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
NVKIGKDVVIVNKD EADRPELGFYIRSGITIIMEKATIEDGMVI
Sbjct: 481 NVKIGKDVVIVNKDGVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5917791|gb|AAD56042.1|AF184598_1 ADP-glucose pyrophosphorylase large subunit [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 1047 bits (2708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/535 (95%), Positives = 516/535 (96%), Gaps = 15/535 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSV NDGCTKQLKKSLKAEKRDEKV
Sbjct: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVRNDGCTKQLKKSLKAEKRDEKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAYA+MTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV
Sbjct: 61 KPGVAYAIMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV+GCYRLIDIP INSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA
Sbjct: 121 PVSGCYRLIDIP----INSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 176
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--------YRMDYMD 232
TQTPGESGKNWFQGTADAV +FTWVFEDAKNRNIENVAILCGDHL YRMDYMD
Sbjct: 177 TQTPGESGKNWFQGTADAVTRFTWVFEDAKNRNIENVAILCGDHLSILCGDHLYRMDYMD 236
Query: 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL 292
FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL
Sbjct: 237 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL 296
Query: 293 GFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR 352
GFSPQEARK PYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR
Sbjct: 297 GFSPQEARKSPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR 356
Query: 353 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHG 412
DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAIISHG
Sbjct: 357 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAIISHG 416
Query: 413 CFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 472
CFLRECTVEHSIVGERSR+DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK
Sbjct: 417 CFLRECTVEHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 476
Query: 473 IRNCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
IRNCIIDKNVKIGKDVVIVNKD EADRPELGFYIRSGITIIMEKATIEDGMVI
Sbjct: 477 IRNCIIDKNVKIGKDVVIVNKDGVQEADRPELGFYIRSGITIIMEKATIEDGMVI 531
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543725|ref|XP_002512925.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223547936|gb|EEF49428.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/531 (80%), Positives = 466/531 (87%), Gaps = 7/531 (1%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSC + L NT++VKASK G GD GE IRGS N Q+K+ LKA+ KV
Sbjct: 1 MDSCLMALNTNTNLVKASKGGINTGDKEFLGEMIRGSSKNSVWFNQMKRRLKADWNVNKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPP----RLERRRVDPKNVAAIILGGGAGTKLFPLTLRAA 116
KPGVAYAV+TS +P E++TL+PP R ERR+VDPKNVA+IILGGGAGT+LFPLT RAA
Sbjct: 61 KPGVAYAVLTSNNPKEIVTLSPPPPPPRFERRKVDPKNVASIILGGGAGTQLFPLTRRAA 120
Query: 117 TPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176
TPAVPV GCY+LIDIPMSNCINSGINKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVE
Sbjct: 121 TPAVPVGGCYKLIDIPMSNCINSGINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVE 180
Query: 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 236
VLAATQTPGE+G NWFQGTADAVRQFTWVFEDAKNRN+EN+ IL GDHLYRMDYMDF+Q
Sbjct: 181 VLAATQTPGEAGMNWFQGTADAVRQFTWVFEDAKNRNVENILILSGDHLYRMDYMDFVQH 240
Query: 237 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 296
HVD +ADITISCAAVGESRASDYGLVKID+ GRI FAEKP GA LK+++ DT+ LG SP
Sbjct: 241 HVDSNADITISCAAVGESRASDYGLVKIDSRGRIVHFAEKPGGAELKSLKADTTQLGLSP 300
Query: 297 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 356
Q+A K PY+ASMGVYVF+ ++L KLLRWR+PTSNDFGSEIIPAA+MEH++Q+Y FRDYWE
Sbjct: 301 QDALKSPYIASMGVYVFRTEILLKLLRWRFPTSNDFGSEIIPAAVMEHNIQSYNFRDYWE 360
Query: 357 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 416
DIGTIKSFYEAN+ALT+E P F FYDPKTPFYTSPRFLPPTKID CRI DAIISHGCFLR
Sbjct: 361 DIGTIKSFYEANLALTEEPPTFEFYDPKTPFYTSPRFLPPTKIDKCRIVDAIISHGCFLR 420
Query: 417 ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC 476
ECTV HS+VGERSRLDYGVELKDTVMLGADYYQTE+EIASLLAEGKVPIGVGRNTKI+NC
Sbjct: 421 ECTVRHSVVGERSRLDYGVELKDTVMLGADYYQTETEIASLLAEGKVPIGVGRNTKIKNC 480
Query: 477 IIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
IIDKN KIGKDVVIVNKD EADRPE GFYIRSGITIIMEKATIEDG VI
Sbjct: 481 IIDKNAKIGKDVVIVNKDGVQEADRPEEGFYIRSGITIIMEKATIEDGTVI 531
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103389|ref|XP_002313036.1| predicted protein [Populus trichocarpa] gi|222849444|gb|EEE86991.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/527 (78%), Positives = 456/527 (86%), Gaps = 3/527 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCC L+ANTHV KASK G GD WGERIRGS +N QL KSLK +K K
Sbjct: 1 MDSCCATLKANTHVAKASKGGFNNGDKEFWGERIRGSFNNSVWVNQLAKSLKVDKSVNKF 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA++V+TS + E +TL PPR ERR+ DPKNVA+IILGGGAGT+LFPLT RAATPAV
Sbjct: 61 KPGVAFSVLTSSNGRETVTLQPPRFERRKADPKNVASIILGGGAGTQLFPLTRRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
P+ GCYRLIDIPMSNCINSGINKIFVLTQFNS SLNRH+ARTYFGNG FGDGFVEVLAA
Sbjct: 121 PLGGCYRLIDIPMSNCINSGINKIFVLTQFNSTSLNRHLARTYFGNGIIFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WFQGTADAVRQFTWVFEDAKNRNIEN+ +L GDHLYRMDYMDF+Q H+D
Sbjct: 181 TQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRNIENILVLSGDHLYRMDYMDFVQHHIDS 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+AD TISCAAVGESRASDYGLVKID G++ QFAEKP G+ L+ M+VDT+ LG SPQ+A
Sbjct: 241 NADFTISCAAVGESRASDYGLVKIDGRGQVFQFAEKPKGSELREMRVDTTRLGLSPQDAM 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L KLLRWRYPT+NDFGSEIIPAA+MEH+VQAYIF+DYWEDIGT
Sbjct: 301 KSPYIASMGVYVFKTDILLKLLRWRYPTANDFGSEIIPAAVMEHNVQAYIFKDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEAN+AL +E P F FYDPKTPFYTSPRF PPTK D CRI +AIISHGCFLRECTV
Sbjct: 361 IKSFYEANLALAEEPPKFEFYDPKTPFYTSPRFSPPTKFDKCRIVNAIISHGCFLRECTV 420
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HS+VGERSRLDYGVELKDTVMLGAD YQTE EIASLLAEG+VPIGVGRNTKIRNCIIDK
Sbjct: 421 QHSVVGERSRLDYGVELKDTVMLGADCYQTEVEIASLLAEGEVPIGVGRNTKIRNCIIDK 480
Query: 481 NVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
N KIGKDV+I+NKD EADR E GFYIRSGITII EKATIEDG VI
Sbjct: 481 NAKIGKDVIIMNKDGVQEADREEEGFYIRSGITIISEKATIEDGTVI 527
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080375|ref|XP_002306116.1| predicted protein [Populus trichocarpa] gi|222849080|gb|EEE86627.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/527 (79%), Positives = 455/527 (86%), Gaps = 4/527 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSC V LRANT V KASK G GD WGERIRGS +N Q KSLK +K K
Sbjct: 1 MDSCYVALRANTPVAKASKGGFINGDTEFWGERIRGSFNNI-WVNQFAKSLKVDKSVNKF 59
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
PGVA+AV+TS + E +TL PPR RRR DPKNVA+IILGGGAGT+LFPLT RAATPAV
Sbjct: 60 TPGVAFAVLTSNNGKETVTLQPPRFGRRRADPKNVASIILGGGAGTQLFPLTRRAATPAV 119
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRH+A TYFGNG NFGDGFVEVLAA
Sbjct: 120 PVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHLAHTYFGNGINFGDGFVEVLAA 179
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WFQGTADAVRQFTWVFEDAKNR+IEN+ IL GDHLYRMDYMDF+Q HVD
Sbjct: 180 TQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRSIENILILSGDHLYRMDYMDFVQHHVDS 239
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADITISC AVGESRASDYGLVKID+ G+I QF EKP G+ L+ MQVDT+ LG SPQ+A
Sbjct: 240 NADITISCVAVGESRASDYGLVKIDSKGQIFQFTEKPKGSELREMQVDTTHLGLSPQDAL 299
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K Y+ASMGVYVFK D+L KLLRWR+PTSNDFGSEIIPAA+MEH+VQAYIF+DYWEDIGT
Sbjct: 300 KSSYIASMGVYVFKTDILLKLLRWRFPTSNDFGSEIIPAAVMEHNVQAYIFKDYWEDIGT 359
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEAN+AL +E P F FYDPKTPFYTSP FLPPTKID CRI DAIISHGCFLRECTV
Sbjct: 360 IKSFYEANLALAEEPPKFEFYDPKTPFYTSPGFLPPTKIDKCRIVDAIISHGCFLRECTV 419
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HS+VGERSRLDYGVELKDTVMLGAD+YQTE+EIASLLAEGKVPIGVGRNTKIRNCIIDK
Sbjct: 420 QHSVVGERSRLDYGVELKDTVMLGADHYQTEAEIASLLAEGKVPIGVGRNTKIRNCIIDK 479
Query: 481 NVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
N KIGKDV+I NKD EADR E GFYIRSGITII+EKATIEDG VI
Sbjct: 480 NAKIGKDVIITNKDGVQEADREEKGFYIRSGITIILEKATIEDGTVI 526
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428422|ref|XP_002283855.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/527 (77%), Positives = 458/527 (86%), Gaps = 3/527 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCV +A H+ KAS+ G GDN WGERIRGS++N G QL K LK EKR K+
Sbjct: 1 MDSCCVTFKAKAHLAKASRGGLSNGDNEFWGERIRGSLNNSGWVSQLAKGLKTEKRPRKI 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA +V+TS + E +T+ P ERRR DPKNVA+IILGGGAGT+LFPLT+R ATPAV
Sbjct: 61 KPGVACSVITSNNGKETVTIQAPIFERRRADPKNVASIILGGGAGTQLFPLTIRQATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIF+LTQFNSASLNRHIARTYFGNG NFGDGFVEVLAA
Sbjct: 121 PVGGCYRLIDIPMSNCINSNINKIFILTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WF+GTADAVR+F WVFEDAKN+NIEN+ IL GDHLYRMDYMD +Q+H+DR
Sbjct: 181 TQTPGEAGMKWFEGTADAVRKFIWVFEDAKNKNIENILILSGDHLYRMDYMDLVQNHIDR 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
ADIT+SC VGESRASDYGL+K+DN GRI QFAEKP GA+LKAM+VDT+ LG SPQEA
Sbjct: 241 KADITVSCVPVGESRASDYGLLKMDNRGRIIQFAEKPKGADLKAMKVDTTRLGLSPQEAM 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L LLRWRYPTSNDFGSEIIP A+MEH+V+A++FRDYWEDIGT
Sbjct: 301 KSPYIASMGVYVFKTDILLNLLRWRYPTSNDFGSEIIPLAVMEHNVEAFLFRDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IK+FYEANM LT+E P F FY+PKTP +TSPRFLPPTKI+ C++ DAIISHGCFLREC+V
Sbjct: 361 IKTFYEANMGLTEEFPKFEFYNPKTPIFTSPRFLPPTKIEQCQVVDAIISHGCFLRECSV 420
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HSIVGERSRLDYGVELKDT+M+GAD+YQTESEIASLLAEG VPIG+GRNTKIRNCIIDK
Sbjct: 421 KHSIVGERSRLDYGVELKDTLMMGADFYQTESEIASLLAEGNVPIGIGRNTKIRNCIIDK 480
Query: 481 NVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
N KIGKD VIVNKD EADRP+ GFYIRSGITII+EKATI+DG VI
Sbjct: 481 NAKIGKDAVIVNKDGVQEADRPDDGFYIRSGITIILEKATIKDGTVI 527
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744412|emb|CBI37674.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/527 (75%), Positives = 452/527 (85%), Gaps = 13/527 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCV +A H+ KAS+ G GDN WGERIRGS++N G Q +K +
Sbjct: 1 MDSCCVTFKAKAHLAKASRGGLSNGDNEFWGERIRGSLNNSGWVSQPRK----------I 50
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA +V+TS + E +T+ P ERRR DPKNVA+IILGGGAGT+LFPLT+R ATPAV
Sbjct: 51 KPGVACSVITSNNGKETVTIQAPIFERRRADPKNVASIILGGGAGTQLFPLTIRQATPAV 110
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIF+LTQFNSASLNRHIARTYFGNG NFGDGFVEVLAA
Sbjct: 111 PVGGCYRLIDIPMSNCINSNINKIFILTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAA 170
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WF+GTADAVR+F WVFEDAKN+NIEN+ IL GDHLYRMDYMD +Q+H+DR
Sbjct: 171 TQTPGEAGMKWFEGTADAVRKFIWVFEDAKNKNIENILILSGDHLYRMDYMDLVQNHIDR 230
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
ADIT+SC VGESRASDYGL+K+DN GRI QFAEKP GA+LKAM+VDT+ LG SPQEA
Sbjct: 231 KADITVSCVPVGESRASDYGLLKMDNRGRIIQFAEKPKGADLKAMKVDTTRLGLSPQEAM 290
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L LLRWRYPTSNDFGSEIIP A+MEH+V+A++FRDYWEDIGT
Sbjct: 291 KSPYIASMGVYVFKTDILLNLLRWRYPTSNDFGSEIIPLAVMEHNVEAFLFRDYWEDIGT 350
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IK+FYEANM LT+E P F FY+PKTP +TSPRFLPPTKI+ C++ DAIISHGCFLREC+V
Sbjct: 351 IKTFYEANMGLTEEFPKFEFYNPKTPIFTSPRFLPPTKIEQCQVVDAIISHGCFLRECSV 410
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
+HSIVGERSRLDYGVELKDT+M+GAD+YQTESEIASLLAEG VPIG+GRNTKIRNCIIDK
Sbjct: 411 KHSIVGERSRLDYGVELKDTLMMGADFYQTESEIASLLAEGNVPIGIGRNTKIRNCIIDK 470
Query: 481 NVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
N KIGKD VIVNKD EADRP+ GFYIRSGITII+EKATI+DG VI
Sbjct: 471 NAKIGKDAVIVNKDGVQEADRPDDGFYIRSGITIILEKATIKDGTVI 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545193|ref|XP_003541029.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/528 (76%), Positives = 453/528 (85%), Gaps = 4/528 (0%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVS-NDGCTKQLKKSLKAEKRDEK 59
M S CV L+ANTH+VK+ K + D+ GERI+G ++ + QL SL+ ++R +K
Sbjct: 1 MVSACVTLKANTHLVKSRKDNTFRQDSGFLGERIKGGLNYSPWIINQLASSLRTQERVKK 60
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
KPGV AV+TS + E + P RR+ DPKNV +IILGGG G +LFPLT RAATPA
Sbjct: 61 AKPGVVSAVLTSSNTKESVAFQMPSFLRRKADPKNVVSIILGGGPGIQLFPLTKRAATPA 120
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYRLIDIPMSNCINSG+NKIFVLTQFNSASLNRHI+RTYFGNG NFGDG VEVLA
Sbjct: 121 VPVGGCYRLIDIPMSNCINSGLNKIFVLTQFNSASLNRHISRTYFGNGINFGDGCVEVLA 180
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQT GE+GKNWFQGTADAVRQFTWVFEDAK+ NIENV IL GDHLYRMDYMD +QSHVD
Sbjct: 181 ATQTQGETGKNWFQGTADAVRQFTWVFEDAKHTNIENVLILAGDHLYRMDYMDLVQSHVD 240
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
R+ADIT+SCAAVGESRASDYGLVK D GRI QF+EKP GA+LKAMQVDTS+LG P EA
Sbjct: 241 RNADITVSCAAVGESRASDYGLVKADGRGRIIQFSEKPKGADLKAMQVDTSVLGLPPHEA 300
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
++ PY+ASMGVYVFK DVL KLL+WRYPTSNDFGSEIIPAA+ E++VQAY F DYWEDIG
Sbjct: 301 KRSPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPAAVRENNVQAYFFNDYWEDIG 360
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFY+AN+ALT+E+P F FYDPKTP YTSPRFLPPTKID CRI DAIISHGCFLRECT
Sbjct: 361 TIKSFYDANLALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECT 420
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
V+HSIVGERSRLDYGVEL+DTVM+GADYYQTESEIASLLAEGKVPIG+GRNTKIRNCIID
Sbjct: 421 VQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIID 480
Query: 480 KNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
KN KIGKDV+I+NKD EADRPE GFYIRSGIT+I+EKATIEDG VI
Sbjct: 481 KNAKIGKDVIIMNKDGVQEADRPEDGFYIRSGITVILEKATIEDGTVI 528
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83630945|gb|ABC26921.1| ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] gi|83630947|gb|ABC26922.1| ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/527 (74%), Positives = 455/527 (86%), Gaps = 6/527 (1%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MD+CC +++ H+ + S G G+ ++GE+IRGS++N+ QL KSLK EK K+
Sbjct: 1 MDTCCAAMKSTVHLGRVSTGGFNNGEKEIFGEKIRGSLNNNLRINQLSKSLKLEK---KI 57
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAY+V+T+++ E + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATPAV
Sbjct: 58 KPGVAYSVITTENDTETVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAV 117
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIFVLTQ+NSA+LNRHIARTYFGNG +FGDGFVEVLAA
Sbjct: 118 PVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAALNRHIARTYFGNGVSFGDGFVEVLAA 177
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+DR
Sbjct: 178 TQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENILVLSGDHLYRMDYMELVQNHIDR 237
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G LKAMQVDT+L+G SPQ+A+
Sbjct: 238 NADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFELKAMQVDTTLVGLSPQDAK 297
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDIGT
Sbjct: 298 KSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGT 357
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+CTV
Sbjct: 358 IKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCTV 417
Query: 421 EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
EHSIVGERSRLD GVELKDT M+GADYYQTESEIASLLAEGKVPIG+G NTKIR CIIDK
Sbjct: 418 EHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDK 477
Query: 481 NVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
N KIGK+V I+NKD EADRPE GFYIRSGI II EKATI DG VI
Sbjct: 478 NAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIISEKATIRDGTVI 524
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508352|ref|XP_003522921.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/528 (75%), Positives = 442/528 (83%), Gaps = 13/528 (2%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCT-KQLKKSLKAEKRDEK 59
M S CV L++NTH+ + K GERI+G +N QL ++ KR K
Sbjct: 1 MASACVTLKSNTHLANSEK--------GFLGERIKGGFNNSALVMNQLAIRSRSHKR-VK 51
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
GV AV+TS + E +TL P RRR DPKNV +IILGGG GT+LFPLT RAATPA
Sbjct: 52 HGVGVVSAVLTSNNAKESLTLQVPSFLRRRADPKNVISIILGGGPGTQLFPLTKRAATPA 111
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYRLIDIPMSNC+NSGINKIFVLTQFNSASLNRHIARTYFGNG NFGDG VEVLA
Sbjct: 112 VPVGGCYRLIDIPMSNCLNSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGIVEVLA 171
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GKNWFQGTADAVRQFTWVFEDAKN N+ENV IL GDHLYRMDYMD +QSHVD
Sbjct: 172 ATQTPGEAGKNWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQSHVD 231
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
R+ADIT+SCAAVG+SRASDYGLVK+D+ GRI QF+EKP+G +LKAMQ DTSLLG SPQ+A
Sbjct: 232 RNADITVSCAAVGDSRASDYGLVKVDDRGRIIQFSEKPNGDDLKAMQADTSLLGLSPQDA 291
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVYVFK DVL LL+WRYPTSNDFGSEIIPAA+ +HDVQ+Y F DYWEDIG
Sbjct: 292 LKSPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVRDHDVQSYFFEDYWEDIG 351
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFY+AN+ALT+ES F FYDPK P YTSP FLPPTKID C+I DAIISHGCFLRECT
Sbjct: 352 TIKSFYDANLALTEESHKFEFYDPKIPIYTSPGFLPPTKIDKCQIVDAIISHGCFLRECT 411
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
V+HSIVGERSRLDYGVEL DTVM+GADYYQTESEIASLLAEGKVPIG+GRNTKIRNCIID
Sbjct: 412 VQHSIVGERSRLDYGVELLDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIID 471
Query: 480 KNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
KN KIGKDV+I NKD EADRPE GFYIRSGITIIMEKATIEDG ++
Sbjct: 472 KNAKIGKDVIIANKDGVQEADRPEDGFYIRSGITIIMEKATIEDGTIV 519
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 524 | ||||||
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.986 | 0.992 | 0.715 | 4.4e-203 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.944 | 0.946 | 0.729 | 1.2e-200 | |
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.977 | 0.988 | 0.641 | 7.6e-183 | |
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.839 | 0.842 | 0.672 | 1.4e-165 | |
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.820 | 0.826 | 0.529 | 4.9e-124 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.812 | 0.828 | 0.526 | 5.1e-122 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.788 | 0.867 | 0.408 | 2e-79 | |
| TIGR_CMR|SO_1498 | 420 | SO_1498 "glucose-1-phosphate a | 0.713 | 0.890 | 0.367 | 2.9e-55 | |
| TIGR_CMR|BA_5122 | 376 | BA_5122 "glucose-1-phosphate a | 0.349 | 0.486 | 0.369 | 1.9e-46 | |
| UNIPROTKB|Q9KLP4 | 407 | glgC2 "Glucose-1-phosphate ade | 0.633 | 0.815 | 0.320 | 4e-42 |
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
Identities = 378/528 (71%), Positives = 431/528 (81%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEK 59
MDSCC T V A K K +N GE+I+GSV K L ++K R+ K
Sbjct: 1 MDSCC-NFSLGTKTVLA-KDSFKNVENKFLGEKIKGSV-----LKPFSSDLSSKKFRNRK 53
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
++PGVAYA+ TSK+ E + P ERRR DPKNVAAIILGGG G KLFPLT RAATPA
Sbjct: 54 LRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPA 113
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYR+IDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVEVLA
Sbjct: 114 VPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVEVLA 173
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q HVD
Sbjct: 174 ATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVD 233
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
ADIT+SCA V ESRAS+YGLV ID GR+ F+EKP+G +LK+MQ DT++ G S QEA
Sbjct: 234 SKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEA 293
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWEDIG
Sbjct: 294 AKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIG 353
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFYEAN+AL +E P F FYD TPFYTSPRFLPPTK + CRI +++ISHGCFL EC+
Sbjct: 354 TIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECS 413
Query: 420 VEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479
++ SI+GERSRLDYGVEL+DT+MLGAD YQTESEIASLLAEG VPIG+GR+TKIR CIID
Sbjct: 414 IQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKCIID 473
Query: 480 KNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
KN KIGK+VVI+NKD EADRPE GFYIRSGIT+++EKATI+DG VI
Sbjct: 474 KNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521
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| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1942 (688.7 bits), Expect = 1.2e-200, P = 1.2e-200
Identities = 367/503 (72%), Positives = 427/503 (84%)
Query: 26 DNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPR 84
+N +GE+ +N+G K+ L ++K R++K K GV YAV TS +P + MT+
Sbjct: 25 ENRFYGEKN----NNNGLCKRFGSDLGSKKFRNQKFKHGVVYAVATSDNPKKAMTVKTSM 80
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
ERR+VDP+NVAAIILGGG G KLFPLT+RAATPAVPV GCYRLIDIPMSNCINS INKI
Sbjct: 81 FERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKI 140
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
FVLTQFNSASLNRH+ARTYFGNG NFG GFVEVLAATQTPGE+GK WFQGTADAVR+F W
Sbjct: 141 FVLTQFNSASLNRHLARTYFGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLW 200
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
VFEDAKNRNIEN+ IL GDHLYRM+YMDF+QSHVD +ADIT+SCA V ESRAS++GLVKI
Sbjct: 201 VFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKI 260
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D GR+ F+EKP+G +LK+MQ DT++LG S QEA PY+ASMGVY FK + L LL
Sbjct: 261 DRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTR 320
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
+YP+SNDFGSE+IPAAI +HDVQ YIFRDYWEDIGTIK+FYEAN+AL +E P F FYDP+
Sbjct: 321 QYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPE 380
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
TPFYTSPRFLPPTK + CR+ D+IISHGCFLREC+V+ SI+GERSRLDYGVEL+DT+MLG
Sbjct: 381 TPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLG 440
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK---DEADRPEL 501
ADYYQTESEIASLLAEGKVPIG+G++TKIR CIIDKN KIGK+V+I+NK EADRPE
Sbjct: 441 ADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEE 500
Query: 502 GFYIRSGITIIMEKATIEDGMVI 524
GFYIRSGIT+I+EKATI+DG VI
Sbjct: 501 GFYIRSGITVIVEKATIQDGTVI 523
|
|
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1774 (629.5 bits), Expect = 7.6e-183, P = 7.6e-183
Identities = 340/530 (64%), Positives = 421/530 (79%)
Query: 1 MDSCCVGLRAN--THVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDE 58
M+SC ++ N T + ++ +A WG ++ N T +L+ + + +
Sbjct: 1 MESCFPAMKLNQCTFGLNNEIVSERV--SAFWGTQV--VKPNHLRTTKLRSAPQ-----K 51
Query: 59 KVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
K++ + +V+T P P L + DPKNVA+IILGGGAGT+LFPLT + A P
Sbjct: 52 KIQTNLIRSVLT---PFVDQESHEPLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKP 108
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEV 177
AVP+ GCYRLIDIPMSNCINSGI KIF+LTQFNS SLNRH++RTY FGNG NFGDGFVEV
Sbjct: 109 AVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEV 168
Query: 178 LAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSH 237
LAATQT G++GK WFQGTADAVRQF WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q H
Sbjct: 169 LAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKH 228
Query: 238 VDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQ 297
++ +ADIT+SC + ESRASD+GL+KID G+I QF+EKP G +LKAMQVDTS+LG P+
Sbjct: 229 IESNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPK 288
Query: 298 EARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWED 357
EA + PY+ASMGVYVF+K+VL KLLR YPTSNDFGSEIIP A+ EH+VQA++F DYWED
Sbjct: 289 EAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWED 348
Query: 358 IGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE 417
IGTI SF++AN+ALT++ P F FYD KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLRE
Sbjct: 349 IGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRE 408
Query: 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCI 477
C+V+HSIVG RSRL+ GVEL+DT+M+GAD+YQTE+EIASLLAEGKVP+GVG+NTKI+NCI
Sbjct: 409 CSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNCI 468
Query: 478 IDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
IDKN KIGK+VVI N D E DRPE GF+IRSGIT++++ ATI DG+ I
Sbjct: 469 IDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDGLHI 518
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| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1611 (572.2 bits), Expect = 1.4e-165, P = 1.4e-165
Identities = 298/443 (67%), Positives = 363/443 (81%)
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
LE + DP+ VA+IILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+
Sbjct: 80 LETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKV 139
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
++LTQ+NSASLNRH+AR Y NG FGDG+VEVLAATQTPGESGK WFQGTADAVRQF W
Sbjct: 140 YILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHW 199
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
+FEDA++++IE+V IL GDHLYRMDYMDFIQ H ADI+ISC + + RASD+GL+KI
Sbjct: 200 LFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKI 259
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D+ GR+ F+EKP G +LKAM VDT++LG S +EA K PY+ASMGVYVFKK++L LLRW
Sbjct: 260 DDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRW 319
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
R+PT+NDFGSEIIP + E V AY+F DYWEDIGTI+SF+EAN+ALT+ AF FYD
Sbjct: 320 RFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAA 379
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444
P YTS R LPP+KIDN ++ D+IISHG FL C +EHSIVG RSR+ V+LKDTVMLG
Sbjct: 380 KPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLG 439
Query: 445 ADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD---EADRPEL 501
ADYY+TE+E+A+LLAEG VPIG+G NTKI+ CIIDKN ++GK+V+I N + EADR
Sbjct: 440 ADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSD 499
Query: 502 GFYIRSGITIIMEKATIEDGMVI 524
GFYIRSGIT+I++ + I+DG+VI
Sbjct: 500 GFYIRSGITVILKNSVIKDGVVI 522
|
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| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 235/444 (52%), Positives = 320/444 (72%)
Query: 90 VDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFV 146
+DP +V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+V
Sbjct: 82 LDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 141
Query: 147 LTQFNSASLNRHIARTYFGN-GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205
LTQFNSASLNRH++R Y N G +GFVEVLAA Q+P NWFQGTADAVRQ+ W+
Sbjct: 142 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWL 199
Query: 206 FEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
FE+ N+ IL GDHLYRMDY FIQ+H + DADIT++ + E RA+ +GL+KID
Sbjct: 200 FEE---HNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKID 256
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
GRI +FAEKP G +LKAM+VDT++LG Q A++ P++ASMG+YV +DV+ LLR +
Sbjct: 257 EEGRIIEFAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQ 316
Query: 326 YPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDP 383
+P +NDFGSE+IP A + VQAY++ YWEDIGTI++FY AN+ +TK+ P F FYD
Sbjct: 317 FPGANDFGSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 376
Query: 384 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVML 443
P YT PR+LPP+K+ + + D++I GC ++ C + HS+VG RS + G ++D++++
Sbjct: 377 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLM 436
Query: 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD---EADRPE 500
GADYY+T +E + L A+G VPIG+G+N+ I+ IIDKN +IG +V I+N D EA R
Sbjct: 437 GADYYETATEKSLLSAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARET 496
Query: 501 LGFYIRSGITIIMEKATIEDGMVI 524
G++I+SGI +++ A I G VI
Sbjct: 497 DGYFIKSGIVTVIKDALIPTGTVI 520
|
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| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 230/437 (52%), Positives = 312/437 (71%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA 153
+V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+VLTQFNSA
Sbjct: 83 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 142
Query: 154 SLNRHIARTYFGN-GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SLNRH++R Y N G +GFVEVLAA Q+P NWFQGTADAVRQ+ W+FE+
Sbjct: 143 SLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP--DNPNWFQGTADAVRQYLWLFEE---H 197
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
N+ IL GDHLYRMDY FIQ+H + D+DIT++ + E RA+ +GL+KID GRI +
Sbjct: 198 NVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVE 257
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332
FAEKP G LKAM VDT++LG A++ PY+ASMG+YV K+V+ +LLR ++P +NDF
Sbjct: 258 FAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDF 317
Query: 333 GSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTS 390
GSE+IP A + VQAY++ YWEDIGTI++FY AN+ +TK+ P F FYD P YT
Sbjct: 318 GSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQ 377
Query: 391 PRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450
PR LPP+K+ + + D++I GC ++ C + HS+VG RS + G ++D++++GADYY+T
Sbjct: 378 PRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYET 437
Query: 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRS 507
E++ L +G +PIG+G+N IR IIDKN +IG +V I+N D EA R G++I+S
Sbjct: 438 EADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQEAARETDGYFIKS 497
Query: 508 GITIIMEKATIEDGMVI 524
GI +++ A + G VI
Sbjct: 498 GIVTVIKDALLPSGTVI 514
|
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| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 181/443 (40%), Positives = 266/443 (60%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++VAAI+ GGG+ ++L+PLT + A+P+A YRLID +SNCINSGI KI+ +TQFNS
Sbjct: 53 QSVAAIVFGGGSDSELYPLTKTRSKGAIPIAANYRLIDAVISNCINSGITKIYAITQFNS 112
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SLN H+++ Y G G D FVEV+AA Q+ + G WFQGTADA+R+ WVFE+
Sbjct: 113 TSLNSHLSKAYSGFGLG-KDRFVEVIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP-- 167
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD----YGLVKIDNMG 268
+ +L G HLY+MDY I+ H ADITI VG S +D +G +++D+
Sbjct: 168 -VTEFLVLPGHHLYKMDYKMLIEDHRRSRADITI----VGLSSVTDHDFGFGFMEVDSTN 222
Query: 269 RIAQFAEKPSGANLK-AMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327
+ +F K + A + T G S C V S G+YV ++ + KLLR
Sbjct: 223 AVTRFTIKGQQDLISVANRTATRSDGTS-----SCS-VPSAGIYVIGREQMVKLLRECLI 276
Query: 328 TSNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP 386
S D SEIIP AI E V+A++F YWED+ +I ++Y ANM K ++ FYD + P
Sbjct: 277 KSKDLASEIIPGAISEGMKVKAHMFDGYWEDVRSIGAYYRANMESIK---SYRFYDRQCP 333
Query: 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD 446
YT PR LPP+ + I ++II GC L +C + S+VG R+R+ V ++D++++G+D
Sbjct: 334 LYTMPRCLPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSD 393
Query: 447 YYQTESEIASLLAEGKVPI--GVGRNTKIRNCIIDKNVKIGKDVVIVNKD---EADRPEL 501
Y+ E ++ E K+ I G+G ++IR I+DKN +IGK+V+I+N+D E +R
Sbjct: 394 IYEMEEDVRRKGKEKKIEIRIGIGEKSRIRRAIVDKNARIGKNVMIINRDNVEEGNREAQ 453
Query: 502 GFYIRSGITIIMEKATIEDGMVI 524
G+ IR GI II+ A I + ++
Sbjct: 454 GYVIREGIIIILRNAVIPNDSIL 476
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| TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 160/435 (36%), Positives = 232/435 (53%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG G++L LT A PA+ G +R+ID P+SNCINSGI ++ V+TQ+ S SL
Sbjct: 16 ALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLI 75
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
RH+ R + G+ VE+L A+Q E NW+QGTADAV Q + ++ +
Sbjct: 76 RHVMRGWGHFKKELGES-VEILPASQRYSE---NWYQGTADAVFQNIDII---RHELPKY 128
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD-YGLVKIDNMGRIAQFAE 275
V +L GDH+YRMDY + +H + AD+T+SC V + A+ +G++++D+ RI F E
Sbjct: 129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRILGFEE 188
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WRYPTSNDF 332
KP L P KC +ASMG YVF + LF+ L+ + DF
Sbjct: 189 KPQ------------LPKHCPGNPEKC--LASMGNYVFNTEFLFEQLKKDAQNAESDRDF 234
Query: 333 GSEIIPAAIMEHDVQAYIFRD-------YWEDIGTIKSFYEANMALTKESPAFHFYDPKT 385
G +IIP+ I +H V AY F+ YW D+GT+ SF+ ANM L +PA + YD K
Sbjct: 235 GKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWLANMELLSPTPALNLYDAKW 294
Query: 386 PFYTSPRFLPPTKI---DNCR---IKDAIISHGCFLRECTVEHSIVGERSRL-DYGVELK 438
P +T LPP K D+ R D+IIS GC + TV S++ R+ Y V ++
Sbjct: 295 PIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSV-VE 353
Query: 439 DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADR 498
D+V+L ++ L R+ KI+N IID+ I + VI + DR
Sbjct: 354 DSVVL--------PDVVVL-----------RHCKIKNAIIDRGCIIPEGTVIGYNHDHDR 394
Query: 499 PELGFYI-RSGITII 512
+ GF + GIT++
Sbjct: 395 AK-GFRVSEKGITLV 408
|
|
| TIGR_CMR|BA_5122 BA_5122 "glucose-1-phosphate adenylyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 72/195 (36%), Positives = 104/195 (53%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L GG G++L LT A PAVP G YR+ID +SNC NSGI + +LTQ+ L+
Sbjct: 9 AMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELH 68
Query: 157 RHIARTYFGNGTNFG--DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNI 214
+I GN + G V VL SG W+ GTA A+ Q +
Sbjct: 69 NYIG---IGNAWDLDRVSGGVTVLPPYAE--SSGVKWYTGTASAIYQNLNYLSQYEP--- 120
Query: 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
E V IL GDH+Y+MDY + H++++AD++IS V AS +G++ + I +F
Sbjct: 121 EYVLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVEFE 180
Query: 275 EKPS--GANLKAMQV 287
EKP +NL +M +
Sbjct: 181 EKPQFPRSNLASMGI 195
|
|
| UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 117/365 (32%), Positives = 190/365 (52%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++ A+IL GG G++L PLT A PAVP G YR+ID ++NC++SG+ +I VLTQ+ S
Sbjct: 2 QDTLAVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKS 61
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SL++H+ + G+ F+ V+ G GK W++GTADA+ W+ A++
Sbjct: 62 HSLHKHLRNGWSIFNPELGE-FITVVPPQMRKG--GK-WYEGTADALFHNMWLL--ARS- 114
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+ + V +L GDH+YRMDY ++ H+ ++A +TI+C V AS +G++ ID+ RI
Sbjct: 115 DAKYVVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITC 174
Query: 273 FAEKPSGANLKAMQVDTSL--LG---FSPQEARKC---PYVASMGVYVFKKDVLFKLLRW 324
F EKP+ + D SL +G F+ +K + F KDV+ KL+
Sbjct: 175 FVEKPADPPCIPNRPDHSLASMGIYIFNMDVLKKALTEDAEIEQSSHDFGKDVIPKLIA- 233
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTKESPAFHFYDP 383
T + F + + RD YW D+GTI SFY+ANM L + P + Y
Sbjct: 234 ---TGSVFAYSFCSG-------KGRVARDCYWRDVGTIDSFYDANMDLLQPVPPMNLYQK 283
Query: 384 KTPFYTSPRFLPPTK-IDNCRIKD-----AIISHGCFLRECTVEHSIVGERSRLDYGVEL 437
T + PP + + + + +II++G +V+HSI+ R++ +
Sbjct: 284 NWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSNVRINDSALI 343
Query: 438 KDTVM 442
D+++
Sbjct: 344 VDSIL 348
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5871 | 0.8091 | 0.9883 | yes | no |
| P12300 | GLGL3_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6666 | 0.8206 | 0.86 | N/A | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.5308 | 0.8110 | 0.9860 | yes | no |
| Q00081 | GLGL1_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.7867 | 0.8893 | 0.9914 | N/A | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5458 | 0.8091 | 0.9883 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.5626 | 0.7843 | 0.9580 | yes | no |
| P55242 | GLGL2_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6427 | 0.9809 | 0.9903 | N/A | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6255 | 0.9064 | 0.9834 | N/A | no |
| P55241 | GLGL1_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.57 | 0.9293 | 0.9437 | N/A | no |
| P52415 | GLGC_SYNY3 | 2, ., 7, ., 7, ., 2, 7 | 0.5573 | 0.8091 | 0.9658 | N/A | no |
| B1WT08 | GLGC_CYAA5 | 2, ., 7, ., 7, ., 2, 7 | 0.5481 | 0.8091 | 0.9883 | yes | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.5688 | 0.8091 | 0.9883 | yes | no |
| P12299 | GLGL2_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6645 | 0.8740 | 0.8773 | N/A | no |
| P55233 | GLGL1_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.6491 | 0.9790 | 0.9827 | N/A | no |
| P55231 | GLGL3_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.7159 | 0.9866 | 0.9923 | yes | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.5619 | 0.8110 | 0.9883 | yes | no |
| P55234 | GLGL2_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.6011 | 0.9541 | 0.9596 | N/A | no |
| P30524 | GLGL1_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.6623 | 0.8740 | 0.8757 | N/A | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5642 | 0.8091 | 0.9883 | yes | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.5688 | 0.8091 | 0.9883 | yes | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.5711 | 0.8091 | 0.9883 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.5619 | 0.8110 | 0.9883 | yes | no |
| Q9SIK1 | GLGL4_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.7296 | 0.9446 | 0.9464 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_Genewise1_v1.C_LG_IX1717 | glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP (By similarity) (527 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.XV.361.1 | hypothetical protein (586 aa) | • | • | • | • | 0.957 | |||||
| gw1.164.92.1 | hypothetical protein (387 aa) | • | • | • | • | 0.949 | |||||
| gw1.XVII.1126.1 | hypothetical protein (688 aa) | • | • | • | • | 0.943 | |||||
| estExt_fgenesh4_pg.C_LG_IX1158 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa) | • | • | • | • | 0.933 | |||||
| estExt_Genewise1_v1.C_LG_IV2986 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa) | • | • | • | • | 0.931 | |||||
| estExt_Genewise1_v1.C_LG_IV0101 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (950 aa) | • | • | • | 0.927 | ||||||
| estExt_fgenesh4_pg.C_LG_XV1054 | phosphoglucomutase (EC-5.4.2.2) (551 aa) | • | • | 0.906 | |||||||
| eugene3.00121193 | phosphoglucomutase (EC-5.4.2.2) (631 aa) | • | • | 0.905 | |||||||
| estExt_fgenesh4_pm.C_LG_VIII0571 | phosphoglucomutase (EC-5.4.2.2) (582 aa) | • | • | 0.905 | |||||||
| estExt_fgenesh4_pg.C_LG_X0989 | phosphoglucomutase (EC-5.4.2.2) (582 aa) | • | • | 0.905 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 524 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-175 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-133 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-106 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 1e-104 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 2e-96 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 2e-89 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 4e-57 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-37 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 4e-33 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 9e-32 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 6e-29 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 1e-15 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 9e-15 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 1e-14 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 3e-14 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 4e-14 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 1e-10 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 4e-07 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 2e-06 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 1e-05 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 3e-05 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 4e-05 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 1e-04 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 1e-04 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 2e-04 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 2e-04 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 4e-04 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 5e-04 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 0.003 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 859 bits (2222), Expect = 0.0
Identities = 328/438 (74%), Positives = 378/438 (86%), Gaps = 7/438 (1%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN 151
PK+VAAIILGGGAGT+LFPLT R A PAVP+ G YRLIDIPMSNCINSGINKI+VLTQFN
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 152 SASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAK 210
SASLNRH++R Y FGNG NFGDGFVEVLAATQTPGE G WFQGTADAVRQF W+FEDAK
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAK 118
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
N+N+E V IL GDHLYRMDYMDF+Q H + ADITI+C V ESRASD+GL+KID+ GRI
Sbjct: 119 NKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330
+F+EKP G LKAMQVDT++LG SP+EA++ PY+ASMG+YVFKKDVL KLLRWR+PT+N
Sbjct: 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238
Query: 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYT 389
DFGSEIIP AI E ++VQAY+F YWEDIGTIKSFYEAN+ALTK+ P F FYDP P YT
Sbjct: 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYT 298
Query: 390 SPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQ 449
SPRFLPP+KI++CRI D+IISHGCFLREC +EHS+VG RSR+ GVE++DTVM+GADYY+
Sbjct: 299 SPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYE 358
Query: 450 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD---EADRPELGFYIR 506
TE EIASLLAEGKVPIG+G NTKIRN IIDKN +IGK+VVI+NKD EADR E G+YIR
Sbjct: 359 TEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIR 418
Query: 507 SGITIIMEKATIEDGMVI 524
SGI +I++ A I DG VI
Sbjct: 419 SGIVVILKNAVIPDGTVI 436
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 673 bits (1740), Expect = 0.0
Identities = 247/436 (56%), Positives = 319/436 (73%), Gaps = 12/436 (2%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K V AIILGGGAGT+L+PLT A PAVP+AG YRLIDIP+SNCINSGINKI+VLTQFNS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
ASLNRHI++TY N F GFVEVLAA QTP +WFQGTADAVR++ W F+
Sbjct: 62 ASLNRHISQTY--NFDGFSGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQ---EW 114
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+++ IL GD LYRMDY F+Q H + ADIT++ V E AS +GL+K D+ GRI +
Sbjct: 115 DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITE 174
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332
F+EKP G LKAM VDTS LG SP+EA+ PY+ASMG+YVF +DVLF LL + P DF
Sbjct: 175 FSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTDF 233
Query: 333 GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE-SPAFHFYDPKTPFYTSP 391
G EIIP AI ++ VQ+Y+F YWEDIGTI++FYEAN+ALT++ +P F FYD K P YT
Sbjct: 234 GKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRA 293
Query: 392 RFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451
R+LPP+K+ + I ++II+ GC ++ C++ HS++G RSR++ G ++DT+++GAD+Y++
Sbjct: 294 RYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESS 353
Query: 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSG 508
E L EGK P+G+G T I+ IIDKN +IG +V IVNKD EADR + GFYIR G
Sbjct: 354 EEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDG 413
Query: 509 ITIIMEKATIEDGMVI 524
I ++++ A I DG VI
Sbjct: 414 IVVVVKNAVIPDGTVI 429
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 497 bits (1283), Expect = e-175
Identities = 181/401 (45%), Positives = 239/401 (59%), Gaps = 45/401 (11%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L GG G++L PLT R A PAVP G YR+ID P+SNCINSGI +I VLTQ+ S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
RHI R + +G F DGFV +L A Q ESG +W+QGTADAV Q + ED + E
Sbjct: 61 RHIQRGWDFDG--FIDGFVTLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEY 113
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
V IL GDH+Y+MDY + H++ AD+TI+C V AS +G++++D GRI F EK
Sbjct: 114 VLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEK 173
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR---YPTSNDFG 333
P AN ++ +ASMG+Y+F KDVL +LL +S+DFG
Sbjct: 174 P--ANPPSIP------------GMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219
Query: 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRF 393
+IIP A+ E VQAY+F YW D+GTI SF+EANM L P F YD K P YT F
Sbjct: 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEF 279
Query: 394 LPPTKIDNCR--IKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 451
LPP K + + D+++S GC + TV HS++G R R+ G ++D+V++G
Sbjct: 280 LPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD------ 333
Query: 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492
+G+GR IRN IIDKNV+IG+ VVI N
Sbjct: 334 -------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 392 bits (1009), Expect = e-133
Identities = 162/438 (36%), Positives = 233/438 (53%), Gaps = 52/438 (11%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN 151
KNV AIIL GG G++L PLT A PAVP G YR+ID +SNC+NSGI +I VLTQ+
Sbjct: 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYK 62
Query: 152 SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN 211
S SLN HI R + + +G V +L A Q G G+ W++GTADA+ Q + +
Sbjct: 63 SHSLNDHIGRGWPW-DLDRKNGGVFILPAQQREG--GERWYEGTADAIYQNLLIIRRS-- 117
Query: 212 RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
+ E V IL GDH+Y+MDY D + H++ AD+T++ V AS +G++ +D GRI
Sbjct: 118 -DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRII 176
Query: 272 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYPT 328
+F EKP SL ASMG+Y+F D+L +LL +
Sbjct: 177 EFVEKP-----ADGPPSNSL--------------ASMGIYIFNTDLLKELLEEDAKDPNS 217
Query: 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFY 388
S+DFG +IIP + V AY F YW D+GTI S+YEANM L P + YD P Y
Sbjct: 218 SHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIY 277
Query: 389 TSPRFLPPTKIDNCR-IKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADY 447
T + LPP K N + +++++ GC + TVE+S++ R+ G ++++V++
Sbjct: 278 TKNKNLPPAKFVNDSEVSNSLVAGGCII-SGTVENSVLFRGVRIGKGSVIENSVIMPD-- 334
Query: 448 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI-VNKDEADRPELGFYIR 506
+ +G +R IIDKNV IG+ VVI +K E DR F
Sbjct: 335 -----------------VEIGEGAVLRRAIIDKNVVIGEGVVIGGDKPEEDRK--RFRSE 375
Query: 507 SGITIIMEKATIEDGMVI 524
GI ++ + I+ ++
Sbjct: 376 EGIVVVPKGMVIKLDIME 393
|
Length = 393 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = e-106
Identities = 156/463 (33%), Positives = 227/463 (49%), Gaps = 78/463 (16%)
Query: 78 MTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCI 137
L R+ ++ A+IL GG G++L LT + A PAV G +R+ID +SNCI
Sbjct: 1 EKNDSLMLARQL--TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCI 58
Query: 138 NSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG----FVEVLAATQTPGESGKNWFQ 193
NSGI +I VLTQ+ + SL RHI R G +F FV++L A Q +NW++
Sbjct: 59 NSGIRRIGVLTQYKAHSLIRHIQR-----GWSFFREELGEFVDLLPAQQR--VDEENWYR 111
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
GTADAV Q + + + V IL GDH+Y+MDY + HV+ AD T++C V
Sbjct: 112 GTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAM--QVDTSLLGFSPQEARKCPYVASMGVY 311
AS +G++ +D RI F EKP AN AM D SL ASMG+Y
Sbjct: 169 EEASAFGVMAVDENDRITAFVEKP--ANPPAMPGDPDKSL--------------ASMGIY 212
Query: 312 VFKKDVLFKLLRW--RYPTSN-DFGSEIIPAAIMEHDVQAYIFRD-----------YWED 357
VF D L++LL P S+ DFG +IIP + E V A+ F D YW D
Sbjct: 213 VFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRD 272
Query: 358 IGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI----DNCR--IKDAIISH 411
+GT+ ++++AN+ L +P YD P +T LPP K R ++++S
Sbjct: 273 VGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSG 332
Query: 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP-IGVGRN 470
GC + V S++ R R++ ++D+V+L P + VGR+
Sbjct: 333 GCIISGAVVRRSVLFSRVRVNSFSNVEDSVLL--------------------PDVNVGRS 372
Query: 471 TKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYI-RSGITII 512
++R C+ID+ I + +VI E D F GI ++
Sbjct: 373 CRLRRCVIDRGCVIPEGMVIGEDPEEDAKR--FRRSEEGIVLV 413
|
Length = 425 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-104
Identities = 147/442 (33%), Positives = 218/442 (49%), Gaps = 66/442 (14%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
V AI+L GG G +L PLT A PAVP G YRLID +SN +NSG +I+VLTQ+ S
Sbjct: 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKS 63
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SL+RHI++T+ + ++ + A Q GK W+ G+ADA+ Q + ED
Sbjct: 64 HSLDRHISQTW--RLSGLLGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDEDP- 117
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+ V + DH+YRMD + H++ A +T++ V AS +G++++D GRI
Sbjct: 118 --DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRG 175
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTS 329
F EKP A+ + D P EA +ASMG YVF D L LR +S
Sbjct: 176 FLEKP--ADPPGLPDD-------PDEA-----LASMGNYVFTTDALVDALRRDAADEDSS 221
Query: 330 NDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPA 377
+D G +IIP + Y F R YW D+GTI ++Y+A+M L P
Sbjct: 222 HDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV 281
Query: 378 FHFYDPKTPFYTSPRFLPPTKI-----DNCRIKDAIISHGCFLRECTVEHSIVGERSRLD 432
F+ Y+ + P YTS LPP K +D+++S G + TV +S++ ++
Sbjct: 282 FNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVE 341
Query: 433 YGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI-V 491
G E++D+V++ V I GR +R I+DKNV + I V
Sbjct: 342 SGAEVEDSVLM-----------------DGVRI--GRGAVVRRAILDKNVVVPPGATIGV 382
Query: 492 NKDEADRPELGFYI-RSGITII 512
+ +E DR F + GI ++
Sbjct: 383 DLEE-DRR--RFTVSEGGIVVV 401
|
Length = 407 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 297 bits (762), Expect = 2e-96
Identities = 152/450 (33%), Positives = 214/450 (47%), Gaps = 90/450 (20%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K + A+IL GG GT+L LT A PAVP G YR+ID +SNC NSGI+ + VLTQ+
Sbjct: 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQP 61
Query: 153 ASLNRHIARTYFGNGTNFG----DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFED 208
LN HI G G+ + +G V +L G W++GTA A+ Q
Sbjct: 62 LELNNHI-----GIGSPWDLDRINGGVTILPPYS--ESEGGKWYKGTAHAIYQ------- 107
Query: 209 AKNRNI--------ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYG 260
NI E V IL GDH+Y+MDY + H +++AD+TI+ V AS +G
Sbjct: 108 ----NIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFG 163
Query: 261 LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320
++ D RI +F EKP N K S L ASMG+Y+F L +
Sbjct: 164 IMNTDENMRIVEFEEKP--KNPK------SNL-------------ASMGIYIFNWKRLKE 202
Query: 321 LLRWRYPT---SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376
L S+DFG +IP + E + AY F+ YW+D+GTI+S +EANM L +
Sbjct: 203 YLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPEN 262
Query: 377 AFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGV 435
+ +D Y+ LPP I +N ++K++++ GC + TVEHS++ + ++ G
Sbjct: 263 PLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVV-YGTVEHSVLFQGVQVGEGS 321
Query: 436 ELKDTV-MLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
+KD+V M GA +G N I II +N IG V+I
Sbjct: 322 VVKDSVIMPGAK--------------------IGENVVIERAIIGENAVIGDGVIIGGGK 361
Query: 495 EADRPELGFYIRSGITIIMEKATIEDGMVI 524
E IT+I E I G VI
Sbjct: 362 EV------------ITVIGENEVIGVGTVI 379
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 2e-89
Identities = 89/284 (31%), Positives = 129/284 (45%), Gaps = 44/284 (15%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINK-IFVLTQFNSASL 155
AIIL GG+GT+L+PLT A P VPV Y +I +S +N+GI + I + TQ + +
Sbjct: 2 AIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLV 61
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ FG ++V A Q GTA AV D E
Sbjct: 62 AEQLGDGS-----KFG---LQVTYALQPEPR-------GTAPAVALAADFLGDDDP---E 103
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
V +L GDH+YRMD+ + +Q + AD T++ V + YG+++ D GR+ +F E
Sbjct: 104 LVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVE 163
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDFG 333
KP K ASMG+Y F V L + D
Sbjct: 164 KPDLP--------------------KASNYASMGIYFFNSGVFLFLAKYLKELARGEDEI 203
Query: 334 SEIIPAAIMEHDVQ-AYIFRD--YWEDIGTIKSFYEANMALTKE 374
++ IPAA+ + D+ A++FR YW D+GT S +EAN+ L
Sbjct: 204 TDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLLTG 247
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 188 bits (481), Expect = 4e-57
Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL GG GT+L PLT + A PAVP G YRLID P+SN +NSGI + VLTQ+ S SLN
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLN 60
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
H+ + + +G + +L Q G +W++GTADA+ Q E + E
Sbjct: 61 DHLGSGKEWDL-DRKNGGLFILPPQQRKGG---DWYRGTADAIYQNLDYIERSDP---EY 113
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISC 248
V IL GDH+Y MDY + + H++ ADIT+
Sbjct: 114 VLILSGDHIYNMDYREMLDFHIESGADITVVY 145
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 98/402 (24%), Positives = 162/402 (40%), Gaps = 79/402 (19%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA 153
+ A+IL GG GT+L PLT P +P+AG LI+ + +G+ +I ++
Sbjct: 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAG-KPLIEYVLEALAAAGVEEIVLVV----G 55
Query: 154 SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR- 212
L I YFG+G G V+ GTA A++ A +
Sbjct: 56 YLGEQIEE-YFGDGEGLGVRITYVVEKEPL----------GTAGALKN-------ALDLL 97
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMGRIA 271
++ +L GD L +D + ++ H + A TI A S++G+V+ D GR+
Sbjct: 98 GGDDFLVLNGDVLTDLDLSELLEFHKKKGALATI--ALTRVLDPSEFGVVETDDGDGRVV 155
Query: 272 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331
+F EKP + + G+Y+F +V F + D
Sbjct: 156 EFREKPGPEEPP-------------------SNLINAGIYIFDPEV-FDYI--EKGERFD 193
Query: 332 FGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS 390
F E++PA + DV Y+F YW DIGT + EAN L + + P
Sbjct: 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVII 253
Query: 391 PR--FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYY 448
+ P I A I G + ++++GE + GVE+K+++++
Sbjct: 254 RSAYIIGPVVIG----PGAKIGPGALIG----PYTVIGEGVTIGNGVEIKNSIIM----- 300
Query: 449 QTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490
+ V +G + I + II +N KIG ++I
Sbjct: 301 -----------DNVV---IGHGSYIGDSIIGENCKIGASLII 328
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 4e-33
Identities = 70/264 (26%), Positives = 118/264 (44%), Gaps = 48/264 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT+L PLT P +P+AG +++ + +GI++I ++ + +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAG-KPILEYIIERLARAGIDEIILVVGYLGEQI- 58
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNI-E 215
YFG+G+ FG V + Q GTA AVR A++ +
Sbjct: 59 ----EEYFGDGSKFG---VNIEYVVQEEPL-------GTAGAVRN-------AEDFLGDD 97
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+ ++ GD L +D + ++ H ++ AD TI+ V S YG+V++D+ GR+ +F E
Sbjct: 98 DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEV--EDPSRYGVVELDDDGRVTRFVE 155
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
KP+ +A+ G+Y+F+ ++ + P D ++
Sbjct: 156 KPTLPE---------------------SNLANAGIYIFEPEI-LDYIPEILPRGEDELTD 193
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIG 359
IP I E V Y YW DIG
Sbjct: 194 AIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 9e-32
Identities = 99/419 (23%), Positives = 169/419 (40%), Gaps = 77/419 (18%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++AII + L PLT ++P G YRLID P+SN +N+GI +F+ +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE 60
Query: 153 -ASLNRHIARTYFGNGTNFG-----DG-FVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205
SL H+ G+G + DG FV + + R F+
Sbjct: 61 RQSLFDHL-----GSGREWDLHRKRDGLFVFPY---NDRDDLSEGGK-------RYFSQN 105
Query: 206 FEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
E K E +L + +D ++ H + DIT+ V + AS+Y
Sbjct: 106 LEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYD----- 160
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
I +F E ++ L +E S+ +Y+ D+L +LL
Sbjct: 161 ---TILRFDESGKVKSIG------QNLNPEEEENI------SLDIYIVSTDLLIELLY-- 203
Query: 326 YPTSNDFGSEIIPAAIM-----EHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH- 379
G ++ E ++ AY + Y +I ++KS+Y+ANM L P
Sbjct: 204 --ECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD--PQNFQ 259
Query: 380 --FYDPKTPFYTSPRFLPPTK-IDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVE 436
FY + P YT + PPT +N +++++++++GC + E VE+SI+ +
Sbjct: 260 SLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCII-EGKVENSILSRGVHVGKDAL 318
Query: 437 LKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE 495
+K+ +++ + I G + N IIDK+V I +V I E
Sbjct: 319 IKNCIIM------QRTVI-------------GEGAHLENVIIDKDVVIEPNVKIAGTSE 358
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 6e-29
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 395 PPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI 454
PP +K++++S GC + TVE+S++ R+ G ++D+V++
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNV-------- 52
Query: 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIME 514
G+GRN IR IIDKNV I VVI E DR + GI ++ +
Sbjct: 53 -----------GIGRNAVIRRAIIDKNVVIPDGVVIGGDPEEDRAR-FYVTEDGIVVVGK 100
Query: 515 KATI 518
I
Sbjct: 101 GMVI 104
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 1e-15
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 49/271 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG GT+L + P PVAG ++ + GI++I + + L
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAG-RPFLEYLLEYLARQGISRIVLSVGY----LA 55
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
I YFG+G G P GT A++ + +
Sbjct: 56 EQI-EEYFGDGYRGG--IRIYYVIEPEP--------LGTGGAIKNALPKLPE------DQ 98
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+L GD + +D + + + AD T++ V + AS YG V +D GR+ F EK
Sbjct: 99 FLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFVEK 156
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336
GA + GVY+ +K++L ++ S +++
Sbjct: 157 GPGAAPG--------------------LING-GVYLLRKEILAEIP--ADAFS--LEADV 191
Query: 337 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367
+PA + + + Y+ DIG + + A
Sbjct: 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 9e-15
Identities = 70/281 (24%), Positives = 104/281 (37%), Gaps = 62/281 (22%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+IL GG GT+L PLT +PVAG +I + + +GI I ++
Sbjct: 3 GLILAGGKGTRLRPLTYTRPKQLIPVAG-KPIIQYAIEDLREAGIEDIGIVV-----GPT 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G+G+ FG +L G A AV D E
Sbjct: 57 GEEIKEALGDGSRFGVRITYILQEEP----------LGLAHAV----LAARDFLGD--EP 100
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+ GD+L + ++ ++ DAD +I A V + R +G+ +D+ GRI + EK
Sbjct: 101 FVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRR--FGVAVVDD-GRIVRLVEK 157
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRYPTSNDF 332
P + S L A +GVY F + L+ WR
Sbjct: 158 P--------KEPPSNL-------------ALVGVYAFTPAIFDAISRLKPSWR------- 189
Query: 333 GSEIIPAAIME-----HDVQAYIFRDYWEDIGTIKSFYEAN 368
G I AI V I +W+D GT + EAN
Sbjct: 190 GELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 72/282 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+I+ GG GT+L PLT P + V G +++ + I G ++ S+N
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGG-KPILETIIDRFIAQGFRNFYI-------SVN 52
Query: 157 --RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ-----GTADAVRQFTWVFEDA 209
+ YFG+G+ FG V + ++ + GTA A+
Sbjct: 53 YLAEMIEDYFGDGSKFG---VNI------------SYVREDKPLGTAGALSLL------- 90
Query: 210 KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 269
+ + ++ GD L ++Y + H + +AD T+ C E + YG+V+ + GR
Sbjct: 91 PEKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATV-CVREYEVQVP-YGVVETEG-GR 147
Query: 270 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329
I EKP+ ++ + G+YV + +VL
Sbjct: 148 ITSIEEKPT-----------------------HSFLVNAGIYVLEPEVL------DLIPK 178
Query: 330 NDF--GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEAN 368
N+F ++I I E V + +YW DIG + + +AN
Sbjct: 179 NEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 60/283 (21%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT++ PLT P +PVAG L++ + ++GI+ + +
Sbjct: 3 AVILAAGKGTRMRPLTETRPKPMLPVAG-KPLLEHIIEALRDAGIDDFVFVVGY----GK 57
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ R YFG+G+ G V + Q GTADA+ AK +
Sbjct: 58 EKV-REYFGDGSRGG---VPIEYVVQEEQL-------GTADALGS-------AKEYVDDE 99
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+L GD L D ++ + + +A + A V SDYG+V+ D GR+ EK
Sbjct: 100 FLVLNGDVLLDSDLLERL---IRAEAP---AIAVVEVDDPSDYGVVETDG-GRVTGIVEK 152
Query: 277 PSGA--NLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS 334
P NL + G+Y+F ++ F+LL + S
Sbjct: 153 PENPPSNL-----------------------INAGIYLFSPEI-FELLE-KTKLSPRGEY 187
Query: 335 EI---IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374
E+ + I E V+A +W D+G +AN AL
Sbjct: 188 ELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLDN 230
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 72/288 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+IL GG+GT+L PLT +PV +I P+ + +GI I ++
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPVYD-KPMIYYPLETLMLAGIRDILIVVGPEDKPTF 61
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQT-PGESGKNWFQGTADAV---RQFTWVFEDAKNR 212
+ + G+G++FG V++ A Q P G A AV F
Sbjct: 62 KEL----LGDGSDFG---VDITYAVQPEPD--------GLAHAVLIAEDFV--------- 97
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
++ + GD++++ + ++ + + TI V + YG+V+ D G++
Sbjct: 98 GDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIG 155
Query: 273 FAEKPS--GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRY 326
EKP +NL A G+Y + V K ++ R
Sbjct: 156 LEEKPKEPKSNL-----------------------AVTGLYFYDPSVFEAIKQIKPSAR- 191
Query: 327 PTSNDFG-SEIIPA--AIMEHD--VQAYIFRDYWEDIGTIKSFYEANM 369
G EI A +E V A + R +W D GT +S EAN
Sbjct: 192 ------GELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANN 233
|
Length = 286 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 83/403 (20%), Positives = 147/403 (36%), Gaps = 88/403 (21%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT+L PLT +PVA ++ + + +GI I ++ +
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPVAN-KPILQYAIEDLAEAGITDIGIVV----GPVT 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G G FG ++ G A AV D ++
Sbjct: 57 GEEIKEIVGEGERFGAKITYIVQGEP----------LGLAHAVYTARDFLGD------DD 100
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+ GD+L + F++S ++D D I V + A +G+ +++ RI + EK
Sbjct: 101 FVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVLEDGKRILKLVEK 158
Query: 277 PSG--ANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR-----WRYPTS 329
P +NL A +G+Y+F + ++F+ ++ WR
Sbjct: 159 PKEPPSNL-----------------------AVVGLYMF-RPLIFEAIKNIKPSWR---- 190
Query: 330 NDFGSEIIPAAI---MEHD--VQAYIFRDYWEDIGTIKSFYEANMALTKE-SPAFHFYDP 383
G I AI +E V +W+D G + +AN + E D
Sbjct: 191 ---GELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDD 247
Query: 384 KTPFYTSPRFLPPTKIDNCRIKD-AIISHGCFLRECTVEH-SIVGERSRLDYGVELKDTV 441
++ KI N I+ A+I C + + + +GE + E++ ++
Sbjct: 248 ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDA-EVEHSI 306
Query: 442 MLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484
+L ES I G +I + +I K V+I
Sbjct: 307 VL------DESVI------------EGVQARIVDSVIGKKVRI 331
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 68/297 (22%), Positives = 111/297 (37%), Gaps = 88/297 (29%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L+PLT + +PV +I P+S + +GI +I +++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAGIREILIIST------P 55
Query: 157 RHIARTY--FGNGTNFGDGFVEVLAATQ-TPGESGKNWFQGTADAV---RQFTWVFEDAK 210
+ G+G++ G + + A Q PG G A A +F
Sbjct: 56 EDLPLFKELLGDGSDLG---IRITYAVQPKPG--------GLAQAFIIGEEFI------- 97
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD---YGLVKIDNM 267
+ V ++ GD+++ Y + + R A A V +D YG+V+ D
Sbjct: 98 --GDDPVCLILGDNIF---YGQGLSPILQRAAAQKEG-ATVFGYEVNDPERYGVVEFDEN 151
Query: 268 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327
GR+ EKP + K Y A G+Y + DV
Sbjct: 152 GRVLSIEEKP--------------------KKPKSNY-AVTGLYFYDNDVF--------- 181
Query: 328 TSNDFGSEIIPAAIME---HDV-QAYIFR-----------DYWEDIGTIKSFYEANM 369
+ ++ P+A E DV Y+ + W D GT +S EA+
Sbjct: 182 ---EIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 98 IILGGGAGTKLFPLTLRAATPAVPVAGCYR--LIDIPMSNCINSGINKIFVLTQFNSASL 155
IIL GG+GT+L+P+T + +P+ Y +I P+S + +GI I +++
Sbjct: 3 IILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 59
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ + G+G+ +G V + A Q + D + Q + ED +
Sbjct: 60 FQQL----LGDGSQWG---VNLSYAVQP-----------SPDGLAQAFIIGEDFIGG--D 99
Query: 216 NVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
A++ GD++ Y D D ++ R++ T+ V + YG+V+ D+ GR
Sbjct: 100 PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPER--YGVVEFDSNGRAISIE 157
Query: 275 EKPS 278
EKP+
Sbjct: 158 EKPA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYD-KPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGG 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQNGTAI 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
|
Length = 292 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L G G++ PLT +PVA LID + +G+ ++FV+ +S ++
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPVANVP-LIDYTLEWLEKAGVEEVFVVCCEHSQAII 61
Query: 157 RHI 159
H+
Sbjct: 62 EHL 64
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 70/311 (22%), Positives = 106/311 (34%), Gaps = 81/311 (26%)
Query: 97 AIILGGGAGTKLFPLTLRAATPA--VPVAGCYRLIDIP-----MSNCINSGINKIFVLTQ 149
A+I G GT+ P T A P +P+ +D P + + +GI I ++T
Sbjct: 3 AVIPAAGLGTRFLPAT--KAIPKEMLPI------VDKPVIQYIVEEAVAAGIEDIIIVTG 54
Query: 150 FNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF--Q----GTADAVRQFT 203
++ H R+Y T G ++L + + + Q G AV
Sbjct: 55 RGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAV---- 110
Query: 204 WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADI----------TISCAAVGE 253
+ E A+L GD D I S + I+ V
Sbjct: 111 LCAKPFIGD--EPFAVLLGD--------DLIDSKEPCLKQLIEAYEKTGASVIAVEEVPP 160
Query: 254 SRASDYGLVKI----DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPY-VASM 308
S YG+VK ++ ++ EKP P+EA P +A +
Sbjct: 161 EDVSKYGIVKGEKIDGDVFKVKGLVEKPK-----------------PEEA---PSNLAIV 200
Query: 309 GVYVFKKDVLFKLLRWRYPTSNDFGSEI-----IPAAIMEHDVQAYIFRDYWEDIGTIKS 363
G YV D+ F +L P G EI I + E V AY+F D G
Sbjct: 201 GRYVLTPDI-FDILENTKP---GKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLG 256
Query: 364 FYEAN--MALT 372
+ +A AL
Sbjct: 257 YLKATVEFALK 267
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 75/356 (21%), Positives = 124/356 (34%), Gaps = 89/356 (25%)
Query: 190 NWFQ-----GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDA 242
NW GT AV Q D +V +L GD L + + +++H R
Sbjct: 67 NWVLQAEQLGTGHAVLQALPFLPDD-----GDVLVLYGDVPLISAETLERLLEAH--RQN 119
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAE-KPSGANLKAMQ-VDTSLLGFSPQEAR 300
IT+ A + + + YG + +N G++ E K + A KA++ ++T
Sbjct: 120 GITLLTAKLPD--PTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINT----------- 166
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSND------FGSEIIPAAIMEHD-VQAYIFRD 353
GVYVF L RW SN+ + +++I A+ + + V+A D
Sbjct: 167 --------GVYVFDGA---ALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDD 215
Query: 354 YWEDIG--TIKSFYEANMALTKESPAFH------FYDPKTPF-------------YTSPR 392
E +G + L + DP +
Sbjct: 216 SDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVI 275
Query: 393 FLPPTKIDN-------CRIKDAIISHGCFLRE-CTVEHSIVGERS------RLDYGVELK 438
KI + C IK+++I ++ +E S +GE RL G L
Sbjct: 276 LEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG 335
Query: 439 DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
V +G E++ A + K G + + + I NV IG + N D
Sbjct: 336 AGVHIGN---FVETKNARIGKGSKA----GHLSYLGDAEIGSNVNIGAGTITCNYD 384
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 30/135 (22%)
Query: 232 DFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTS 290
+ + H A+ TI V + S YG+V D N GRI +F EKP
Sbjct: 119 ELLDFHKKHGAEGTILVTKVEDP--SKYGVVVHDENTGRIERFVEKP------------- 163
Query: 291 LLGFSPQEARKCPYVASMGVYVFKKDVLFKL-LRWRYPTSNDFGSEIIPAAIMEHDVQAY 349
+ A G+Y+ VL ++ LR PTS EI P E + AY
Sbjct: 164 ------KVFVGNKINA--GIYILNPSVLDRIPLR---PTS--IEKEIFPKMASEGQLYAY 210
Query: 350 IFRDYWEDIGTIKSF 364
+W DIG K F
Sbjct: 211 ELPGFWMDIGQPKDF 225
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG G++L+PLT +PVA +I P+ +G + V+ +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVAN-KPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQF 202
R++ N D EV GTAD++R
Sbjct: 62 STYLRSFPLNLKQKLD---EVTIVLDED--------MGTADSLRHI 96
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 95/454 (20%), Positives = 152/454 (33%), Gaps = 115/454 (25%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAV--PVAGCYRLIDIPMSNCINSGINKIFVLTQF 150
+++A+IL G GT++ ++ P V PVAG PM + I+ L
Sbjct: 1 MSLSAVILAAGKGTRM-----KSDLPKVLHPVAG------KPM---LEHVIDAARALG-- 44
Query: 151 NSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF-----QGTADAVRQFTWV 205
I G G +V A + + GT AV Q
Sbjct: 45 -----PDDIVVVV-------GHGAEQVREALAERDDV--EFVLQEEQLGTGHAVLQALPA 90
Query: 206 FEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAVGESRASD---YG 260
D + +V +L GD L + + + + +H A T+ A D YG
Sbjct: 91 LADDYD---GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA-----ELDDPTGYG 142
Query: 261 LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320
+ D G + E + D S +E ++ + + G+Y F L +
Sbjct: 143 RIVRDGNGEVTAIVE----------EKDAS------EEEKQIKEINT-GIYAFDGAALLR 185
Query: 321 LLRWRYPTSNDFG----SEIIPAAIMEH-DVQAYIFRDYWEDIG--TIKSFYEANMALTK 373
L + +N G +++I A E V+A D E +G EA + +
Sbjct: 186 ALP-KLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQR 244
Query: 374 ESPAFH------FYDPKTPF-------------YTSPRFLPPTKID-------NCRIKDA 407
DP T + + T I IKD+
Sbjct: 245 RIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDS 304
Query: 408 IISHGCFLRECTV-EHSIVGERS------RLDYGVELKDTVMLGADYYQTESEIASLLAE 460
+I ++ +V E S VGE + RL G L V +G E + A++
Sbjct: 305 VIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGN---FVEVKKATIGKG 361
Query: 461 GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494
K G T + + I +NV IG + N D
Sbjct: 362 SK----AGHLTYLGDAEIGENVNIGAGTITCNYD 391
|
Length = 460 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 17/58 (29%)
Query: 467 VGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524
+G T I+N +I +N KIGK+VVI N + I + TIEDG I
Sbjct: 8 IGEGTTIKNSVIGRNCKIGKNVVIDN-----------------SYIWDDVTIEDGCTI 48
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 31/135 (22%)
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAV 251
GT AV+Q A +V +L GD L + + +++H + AD+T+ A
Sbjct: 74 GTGHAVKQA----LPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTA-- 127
Query: 252 GESRASD---YGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308
D YG + D G++ + E + D + E K +
Sbjct: 128 ---ELEDPTGYGRIIRDGNGKVLRIVE----------EKDAT-------EEEKAIREVNA 167
Query: 309 GVYVFKKDVLFKLLR 323
G+Y F + LF+ L
Sbjct: 168 GIYAFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFV 146
A+IL G GT++ PLT P VPVAG + LID + +GI +I V
Sbjct: 2 AMILAAGLGTRMRPLTDTRPKPLVPVAG--KPLIDHALDRLAAAGIRRIVV 50
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 524 | |||
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 100.0 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.97 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.97 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.95 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.94 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.94 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.92 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.92 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.9 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.89 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.87 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.85 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.83 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.78 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.74 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.6 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.6 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.59 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.56 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.56 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.54 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.53 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.53 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.53 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.52 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.52 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.5 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.45 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.44 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.42 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.4 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.36 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.35 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.35 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.35 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.32 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.31 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.28 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.28 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.27 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.27 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.26 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.26 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.24 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.21 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.21 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.2 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 99.2 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.2 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.19 | |
| PLN02296 | 269 | carbonate dehydratase | 99.18 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.18 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.17 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.16 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.16 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.15 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.14 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.13 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.12 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.11 | |
| PLN02472 | 246 | uncharacterized protein | 99.11 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.1 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.09 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.09 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.07 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.07 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.06 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.06 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 99.06 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.06 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.05 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.05 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 99.04 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.04 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.03 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.02 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.01 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.01 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 98.99 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.99 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.99 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 98.97 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.97 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.97 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.97 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.95 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.94 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.93 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.92 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.92 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.92 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.91 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.9 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.9 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 98.89 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.89 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.89 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.89 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.88 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 98.88 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.87 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.86 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.85 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.85 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.85 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.84 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.84 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.82 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.8 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.8 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.79 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.79 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.79 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.78 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.78 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.77 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.76 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.74 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.74 | |
| PLN02296 | 269 | carbonate dehydratase | 98.73 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.73 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.72 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.72 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.72 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.69 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.68 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.65 | |
| PLN02472 | 246 | uncharacterized protein | 98.64 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.63 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.62 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.61 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.61 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.58 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.57 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.56 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.56 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.54 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.52 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.52 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.49 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.48 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.47 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.45 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.44 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.42 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.42 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.42 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.4 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.4 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.4 | |
| PLN02357 | 360 | serine acetyltransferase | 98.38 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.38 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.38 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.36 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.36 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.35 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.34 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.34 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.34 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.32 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.31 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.3 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.25 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.25 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.25 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.18 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.18 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.14 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.13 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.11 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.11 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.11 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.1 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.1 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.1 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.09 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.08 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.08 | |
| PLN02357 | 360 | serine acetyltransferase | 98.08 | |
| PLN02739 | 355 | serine acetyltransferase | 98.07 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 98.04 | |
| PLN02739 | 355 | serine acetyltransferase | 98.03 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.03 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 98.03 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 98.03 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.99 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 97.98 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 97.98 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 97.96 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 97.95 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 97.92 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 97.91 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 97.9 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.83 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.81 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 97.76 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.72 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 97.7 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 97.68 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 97.61 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.61 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.51 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.49 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.27 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 97.2 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 97.16 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 97.1 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.04 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 96.93 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 96.81 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 96.67 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.51 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.48 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.3 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 95.98 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 95.68 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.3 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 94.52 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 94.29 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 92.24 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 91.99 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 88.96 | |
| COG1920 | 210 | Predicted nucleotidyltransferase, CobY/MobA/RfbA f | 84.64 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 83.21 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 82.51 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 82.38 |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-77 Score=604.28 Aligned_cols=384 Identities=41% Similarity=0.713 Sum_probs=352.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~ 170 (524)
++++-|+|||||.|+||.|||+.++||.+|+||+|+|||++|+||.|+||++|.|+|||++.+|++||.+.| |+.+.
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~-- 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR-- 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--
Confidence 577889999999999999999999999999999999999999999999999999999999999999998766 54322
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..+++.++++.+. +.++.|++|||+|++|.++.+++ ...++++|++|||+|+|||.++++.|++++||+|+++.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 2357999988766 34567999999999999999985 567999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~--- 327 (524)
++..++++||+|.+|++|+|++|.|||.... + ...+++||+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~----~---------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGP----P---------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCC----c---------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999998721 0 12379999999999999999987543
Q ss_pred CCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEc-Ceeeec
Q 009817 328 TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKD 406 (524)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~-~~~i~~ 406 (524)
+..||++++||.+++.+++++|+|+|||.||||+++|++||++|++..|.+.+|++.|||+|.....||+++. .+.+.+
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 3679999999999999999999999999999999999999999999778899999999999999999999995 577899
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (524)
|.|+.||+|.+ .|+||+|+.+++|+++|.|++|+||++ ++||+||.|++|||++||.|++
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~ 356 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGE 356 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCC
Confidence 99999999997 999999999999999999999999999 9999999999999999999999
Q ss_pred CcEEeCC-CCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 487 DVVIVNK-DEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 487 ~~~i~~~-~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
|++|.+. .|.|+.. +.+. .|+++|+++..++.+..
T Consensus 357 g~~i~~~~~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 357 GVVIGGDKPEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CcEEcCCcchhcccc-cccc-CCcEEEecccEeccccc
Confidence 9999999 4888888 7777 99999999999988764
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-75 Score=575.20 Aligned_cols=367 Identities=42% Similarity=0.683 Sum_probs=329.2
Q ss_pred ccCCCCCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhc
Q 009817 86 ERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFG 165 (524)
Q Consensus 86 ~~~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~ 165 (524)
+..+++ +.|+|+||.||.||||+|||.++||||+|++++ |||+++|++|+++||++|++.++|+++++++|+.+.|
T Consensus 2 ~~~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y-- 77 (371)
T KOG1322|consen 2 ETRPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY-- 77 (371)
T ss_pred Cccccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh--
Confidence 345566 899999999999999999999999999999977 9999999999999999999999999999999999999
Q ss_pred CCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEE
Q 009817 166 NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADIT 245 (524)
Q Consensus 166 ~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~t 245 (524)
+.++| |+++.+.|++ +.|++||++++|+.+|.+++ .+|+||+|||+|+++|++|+|+|+++++++|
T Consensus 78 -~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~T 143 (371)
T KOG1322|consen 78 -GKELG---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEIT 143 (371)
T ss_pred -hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceE
Confidence 33566 9999988875 68999999999999999863 4999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCcceEEEECC-CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 246 ISCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 246 l~~~~~~~~~a~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
+++.++++ +++||+|++|+ +|+|.+|.|||+... + +-.++|+|+|++++|++++
T Consensus 144 I~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd~v--s-------------------nkinaGiYi~~~~vL~ri~-- 198 (371)
T KOG1322|consen 144 IVVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKDLV--S-------------------NKINAGIYILNPEVLDRIL-- 198 (371)
T ss_pred EEEEeccC--ccccceEEEecCCCceeEehhCchhhh--h-------------------ccccceEEEECHHHHhHhh--
Confidence 99999988 89999999999 899999999999543 2 3457999999999999887
Q ss_pred hCCCCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEcCeee
Q 009817 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRI 404 (524)
Q Consensus 325 ~~~~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i 404 (524)
.+|+ +++++++|.+++++++++|.++|||+|||+|+||+++ +.||+.+.+.++++++.||+++.++.+
T Consensus 199 ~~pt--SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g----------~~~Yl~s~~~~t~~r~~p~~~i~~nvl 266 (371)
T KOG1322|consen 199 LRPT--SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTG----------FSFYLRSLPKYTSPRLLPGSKIVGNVL 266 (371)
T ss_pred hccc--chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHH----------HHHHHhhCcccCCccccCCccccccEe
Confidence 4454 4899999999999999999999999999999999999 667888889999999999999999999
Q ss_pred eceEE--CCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 405 KDAII--SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 405 ~~siI--g~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
.|+++ |++|.|+. +|+||+||+|++|++|++|+||++++|++++++++.+.+|++|++++. +|++||
T Consensus 267 vd~~~~iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~-------~id~~a 335 (371)
T KOG1322|consen 267 VDSIASIGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA-------RIDKNA 335 (371)
T ss_pred eccccccCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce-------EEeccc
Confidence 88665 55555552 499999999999999999999999999999999999999997666664 999999
Q ss_pred EECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeC
Q 009817 483 KIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIE 519 (524)
Q Consensus 483 ~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~ 519 (524)
+||+||+|.|.+ .-...+++++++|++.|.++++|.
T Consensus 336 ~lG~nV~V~d~~-~vn~g~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 336 VLGKNVIVADED-YVNEGSGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred EeccceEEeccc-ccccceeEEeccceeecccccccC
Confidence 999999999986 122238999999999999999874
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-66 Score=553.71 Aligned_cols=431 Identities=76% Similarity=1.266 Sum_probs=376.8
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~ 170 (524)
|++|+|||||||.||||+|||..+||||+||+|+||||||+|++|.++|+++|+|+++++.+++.+|+.+.| ++.+.++
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 678999999999999999999999999999999889999999999999999999999999999999997655 4444444
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
....+.++...|.. ..+.|++||+++++++++++++......++||+++||++++.++.++++.|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 44446776655542 1235789999999999988864211125899999999999999999999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
++.+++++||++.+|++++|.+|.|||..+....+++++++|++++.+....++++++|+|+|++++|..++++.++...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87666789999999999999999999987766778899999998876444456799999999999999888877655555
Q ss_pred chhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEcCeeeeceEE
Q 009817 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 409 (524)
Q Consensus 331 d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i~~siI 409 (524)
+|..++++.++++ .++++|.+++||.|||++++|++||+.++...+....+++.+++++.++..||+++.+++|.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7888999999987 689999999999999999999999999998777666778888999988888999998899999999
Q ss_pred CCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcE
Q 009817 410 SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVV 489 (524)
Q Consensus 410 g~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~ 489 (524)
+++|.|+++.|++|+||++|+|+++|+|.++++|+.+.|++......+...+.+++.||++|.|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999998899999999999999999999999999887777665666666676677999999999999999999999999
Q ss_pred EeCCC---CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 490 IVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 490 i~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
|.+++ +..+.+++++|.+|+++||+++.|++|++|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99887 566778899999999999999999999986
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=535.79 Aligned_cols=425 Identities=58% Similarity=1.005 Sum_probs=366.1
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.|.-. .+.
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~--~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD--GFS 78 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc--ccC
Confidence 568899999999999999999999999999999989999999999999999999999999999999996543111 112
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+.+.++...|.. ....|++||++||+++++++++ ...++|||++||+++++++.+|++.|++.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 2335555544432 1234668999999999999862 2247899999999999999999999999999999999877
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d 331 (524)
+.++++.||++.+|++|+|..|.|||.....+.+.++.++|...+.+.....+++++|+|+|++++|..+++... ...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-Chhh
Confidence 655567899999999999999999998665566777777777777665556679999999999999987776542 3346
Q ss_pred hhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh-ccCCCccccCCCCCCCCCCccCCCeEEcCeeeeceEEC
Q 009817 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (524)
Q Consensus 332 ~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~-~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i~~siIg 410 (524)
+..++++.++++.++++|.+++||.|+||+++|++||+.++ ...+....+.+.+++++.+.+.||+.+.+++++++.||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77799999998899999999999999999999999999998 55566667778899999999999999988999999999
Q ss_pred CCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEE
Q 009817 411 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 411 ~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i 490 (524)
++|.|.++.|.+|+||.+|+||+||+|.+|++|++++|.....-..++-.+.+++.||+||.|++|+|+++|+||++++|
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 99999878999999999999999999999999999888777665666666677899999999999999999999999999
Q ss_pred eCCC---CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 491 VNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 491 ~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
.|++ ++++..+|++|..|+|+|++++.+++||+|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 393 VNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9987 788889999999999999999999999986
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=488.93 Aligned_cols=385 Identities=36% Similarity=0.629 Sum_probs=317.9
Q ss_pred CCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
.|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|-..+.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~-- 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGL-- 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcccc--
Confidence 478899999999999999999999999999999998999999999999999999999999999999999644311111
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
....+......+. .++.|++|||+||+++++++.+ ...++|||++||++++.++.+++++|+++++++|+++..
T Consensus 80 ~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 1111221111111 1346789999999999999863 122569999999999999999999999999999999877
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC---C
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~---~ 327 (524)
++.+.++.||++.+|++|+|..|.|||..+... .. ...++++++|+|+|++++|..+|+... .
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 654456789999999999999999999754210 00 012468999999999999877676422 1
Q ss_pred CCCchhhhhHHhhhhcCceEEEEe------------cCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCC
Q 009817 328 TSNDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (524)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~y~~------------~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p 395 (524)
...++..|+++.++++.++++|.+ ++||.||||+++|++||+.+++..+...++++..++++..+..|
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 234677899999999999999977 59999999999999999999987776677778889999888888
Q ss_pred CeEEc-Ce----eeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 396 PTKID-NC----RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 396 ~~~i~-~~----~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
|+.+. ++ .+.+++||+||.|+++.|++|+||++|+|+++|+|++|++|.+ +.||++
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~ 360 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRG 360 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCC
Confidence 88763 32 5679999999999889999999999999999999999999999 999999
Q ss_pred cEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEe-cCcEEEcCCCEe
Q 009817 471 TKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIR-SGITIIMEKATI 518 (524)
Q Consensus 471 ~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~-~g~~vv~~~~~i 518 (524)
|.|.+|+|+++++||.+++|.+..+.+ .++|.|. +|+++|++|+.|
T Consensus 361 ~~i~~~ii~~~~~i~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 361 AVVRRAILDKNVVVPPGATIGVDLEED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CEEEeeEECCCCEECCCCEECCCcccc--ccceEeccceEEEeCCCCCC
Confidence 999999999999999999998854444 4478886 899999998864
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=479.46 Aligned_cols=370 Identities=38% Similarity=0.648 Sum_probs=316.9
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.. +..|+
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-----~~~~~ 75 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGI-----GSPWD 75 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhC-----CCccc
Confidence 6889999999999999999999999999999999889999999999999999999999999999888742 22332
Q ss_pred ----CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEE
Q 009817 172 ----DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 247 (524)
Q Consensus 172 ----~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~ 247 (524)
...+.++...+. +..++|++||++||+++++++.+ ...++|||++||++++.++.++++.|++++++++++
T Consensus 76 ~~~~~~~~~i~~~~~~--~~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~ 150 (380)
T PRK05293 76 LDRINGGVTILPPYSE--SEGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIA 150 (380)
T ss_pred ccCCCCCEEEeCCccc--CCCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEE
Confidence 123566532222 12346889999999999999862 123689999999999999999999999989999988
Q ss_pred EEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC
Q 009817 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (524)
Q Consensus 248 ~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~ 327 (524)
+...+.+++..||++.+|++|+|.+|.|||..+. .+++++|+|+|++++|..+++....
T Consensus 151 ~~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~ 209 (380)
T PRK05293 151 VIEVPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEK 209 (380)
T ss_pred EEEcchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhh
Confidence 8776544567899999998899999999986432 3678999999999998777765322
Q ss_pred ---CCCchhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEc-Ce
Q 009817 328 ---TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NC 402 (524)
Q Consensus 328 ---~~~d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~-~~ 402 (524)
...+|..++++.++++ .++.+|.++++|.||||+++|++||+.++...+...++++.+.+++.+.+.+|++|+ ++
T Consensus 210 ~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 289 (380)
T PRK05293 210 NPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENA 289 (380)
T ss_pred cCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCC
Confidence 2346778999999876 689999999999999999999999999998777677888888999999999999996 58
Q ss_pred eeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 403 RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 403 ~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
+|.+++||+||.|+ +.+.+|+||++|+|+++|+|++|+++.+ +.||+++.|.+|+|++++
T Consensus 290 ~i~~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~ 349 (380)
T PRK05293 290 KVKNSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENA 349 (380)
T ss_pred EEecCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCC
Confidence 89999999999997 5688999999999999999999999999 999999999999999999
Q ss_pred EECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 483 KIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 483 ~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+||.++.+.+... +..+||++++|+++++|
T Consensus 350 ~i~~~~~i~~~~~------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 350 VIGDGVIIGGGKE------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred EECCCCEEcCCCc------------eeEEEeCCCCCCCCcEe
Confidence 9999999998741 13689999999999886
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=474.96 Aligned_cols=390 Identities=36% Similarity=0.608 Sum_probs=319.6
Q ss_pred CCCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcc
Q 009817 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTN 169 (524)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~ 169 (524)
-.|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.|-....+
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~ 90 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREE 90 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccC
Confidence 34678999999999999999999999999999999955999999999999999999999999999999997544001111
Q ss_pred cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEE
Q 009817 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 170 ~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
. ...+.++...+.. ..++|++|||+|++++++++++ ...++|+|++||++++.+|.++++.|+++++++|+++.
T Consensus 91 ~-~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~ 164 (425)
T PRK00725 91 L-GEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACL 164 (425)
T ss_pred C-CCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEE
Confidence 1 1245555544431 1235778999999999999862 12478999999999999999999999999999999988
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC---
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY--- 326 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~--- 326 (524)
++..+++..||++.+|++++|..|.|||..+.. ++. ....+++++|+|+|++++|..+|++..
T Consensus 165 ~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~~------------~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~ 230 (425)
T PRK00725 165 EVPREEASAFGVMAVDENDRITAFVEKPANPPA--MPG------------DPDKSLASMGIYVFNADYLYELLEEDAEDP 230 (425)
T ss_pred ecchhhcccceEEEECCCCCEEEEEECCCCccc--ccc------------CccceEEEeeEEEEeHHHHHHHHHHhhcCC
Confidence 775555678999999988999999999864320 000 002468999999999999877776532
Q ss_pred CCCCchhhhhHHhhhhcCceEEEEec-----------CeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCC
Q 009817 327 PTSNDFGSEIIPAAIMEHDVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (524)
Q Consensus 327 ~~~~d~~~dii~~li~~~~V~~y~~~-----------~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p 395 (524)
....+|..|+++.++++.++++|.++ +||.||||+++|++||+.++...+...+++...++++.....|
T Consensus 231 ~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~ 310 (425)
T PRK00725 231 NSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLP 310 (425)
T ss_pred CccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCC
Confidence 22457778999999999999999996 5999999999999999999987776777778888998888888
Q ss_pred CeEEc----C--eeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCC
Q 009817 396 PTKID----N--CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (524)
Q Consensus 396 ~~~i~----~--~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~ 469 (524)
|+.+. + +.+.+|+||+||+|.++.|++|+||++|+|+++|+|++|++|++ +.||+
T Consensus 311 ~~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~ 371 (425)
T PRK00725 311 PAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGR 371 (425)
T ss_pred CCeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECC
Confidence 88662 2 45779999999999888999999999999999999999999999 99999
Q ss_pred CcEEeeeEECCCCEECCCcEEeCCCCCCCCCC-ceEEecCcEEEcCCCEeCC
Q 009817 470 NTKIRNCIIDKNVKIGKDVVIVNKDEADRPEL-GFYIRSGITIIMEKATIED 520 (524)
Q Consensus 470 ~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~-~~~i~~g~~vv~~~~~i~~ 520 (524)
+|.|++|||+++|+|+.+++|....+ ...+ ...+..|+++|++++.+.-
T Consensus 372 ~~~i~~~ii~~~~~i~~~~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~ 421 (425)
T PRK00725 372 SCRLRRCVIDRGCVIPEGMVIGEDPE--EDAKRFRRSEEGIVLVTREMLDKL 421 (425)
T ss_pred CCEEeeEEECCCCEECCCCEECCCCC--CCCceeEecCccEEEECCCccccc
Confidence 99999999999999999999975531 1122 3445689999999976543
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=427.84 Aligned_cols=356 Identities=50% Similarity=0.854 Sum_probs=291.1
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.||||+|||+.+||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.| +.. ......++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGW-DFD-GFIDGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhcc-Ccc-CccCCCEE
Confidence 6999999999999999999999999999977999999999999999999999999999999986543 111 00012356
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++...+. +..+.|++||+++++.+++++++ ...++|++++||++++.++.++++.|+++++++++++.+.+.+.+
T Consensus 79 ~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~ 153 (361)
T TIGR02091 79 LLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEA 153 (361)
T ss_pred EeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhc
Confidence 6543332 12345778999999999998863 124789999999999999999999999888888988887765556
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC---CCCCchh
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFG 333 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~---~~~~d~~ 333 (524)
..||++.+|++++|..|.|||..+.... +. + ..+++++|+|+|++++|..+++... ....++.
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~~~~--------~~-~-----~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 219 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPPSIP--------GM-P-----DFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCccccc--------cc-c-----cccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccH
Confidence 7899999998899999999986443100 00 0 1247899999999999876666532 1234667
Q ss_pred hhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCC-CccCCCeEEcC-eeeeceEECC
Q 009817 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS-PRFLPPTKIDN-CRIKDAIISH 411 (524)
Q Consensus 334 ~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~-~~i~p~~~i~~-~~i~~siIg~ 411 (524)
.++++.+++++++++|.++++|.||||+++|++|++.++.+.+....++.++++++. ..+.|+++++. +.|.+++||+
T Consensus 220 ~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~ 299 (361)
T TIGR02091 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299 (361)
T ss_pred HHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECC
Confidence 799999999999999999999999999999999999999876544444445555443 35566778865 5888999999
Q ss_pred CCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEe
Q 009817 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (524)
Q Consensus 412 g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (524)
+|.|+++.|.+|+||++|+|+++|+|.+|+++++ +.||+++.|++|+||++++||.++.|.
T Consensus 300 ~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 300 GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred CCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeC
Confidence 9999977999999999999999999999999998 899999999999999999999999997
Q ss_pred C
Q 009817 492 N 492 (524)
Q Consensus 492 ~ 492 (524)
|
T Consensus 361 ~ 361 (361)
T TIGR02091 361 N 361 (361)
T ss_pred C
Confidence 5
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=431.63 Aligned_cols=346 Identities=24% Similarity=0.424 Sum_probs=278.0
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCch-hHHHHHHHhhhcCCcccC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~-~l~~hl~~~y~~~~~~~~ 171 (524)
+.|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|..+ ++.+|+.. +..|+
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-----~~~~~ 75 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-----GREWD 75 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-----CCCCC
Confidence 4689999999999999999999999999999998899999999999999999999999987 89888853 22232
Q ss_pred CC-----eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEE
Q 009817 172 DG-----FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI 246 (524)
Q Consensus 172 ~~-----~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl 246 (524)
.. ...++ .++. ..|..|++++++++++++++ ...++|||++||++++.+|.+++++|+++++++|+
T Consensus 76 ~~~~~~~~~~~~--~~e~----~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl 146 (369)
T TIGR02092 76 LHRKRDGLFVFP--YNDR----DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITV 146 (369)
T ss_pred cccccCcEEEEe--ccCC----CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEE
Confidence 11 11111 1211 12334778889999988852 12378999999999999999999999999999999
Q ss_pred EEEEcCCCCCCcc-eEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhh
Q 009817 247 SCAAVGESRASDY-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (524)
Q Consensus 247 ~~~~~~~~~a~~~-g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~ 325 (524)
++.+++...+..| +++..|++|+|..|.+++.... ....++|+|+|++++|..+++..
T Consensus 147 ~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~ 205 (369)
T TIGR02092 147 VYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYEC 205 (369)
T ss_pred EEEecCHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHH
Confidence 9988764334567 4567777788887754332211 23568999999999887777654
Q ss_pred CCC-CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCcccc-CCCCCCCCCCccCCCeEEc-Ce
Q 009817 326 YPT-SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKID-NC 402 (524)
Q Consensus 326 ~~~-~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~-~~~~~i~~~~~i~p~~~i~-~~ 402 (524)
.+. ..++..++++.++++.++++|.+++||.||||+++|.+||++++++......+ ....++++...+.+|++|+ ++
T Consensus 206 ~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 285 (369)
T TIGR02092 206 IQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENS 285 (369)
T ss_pred hhcCccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCC
Confidence 332 22455688998888889999999999999999999999999999875322222 2234566655667999995 58
Q ss_pred eeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 403 RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 403 ~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
+|.+|+||+||.|+ +.|++|+|+++|+|++||+|.+++++++ +.|++++.|++|+||+++
T Consensus 286 ~i~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~ 345 (369)
T TIGR02092 286 KVENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDV 345 (369)
T ss_pred EEEEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCC
Confidence 99999999999997 6799999999999999999999999999 999999999999999999
Q ss_pred EECCCcEEeCC
Q 009817 483 KIGKDVVIVNK 493 (524)
Q Consensus 483 ~Ig~~~~i~~~ 493 (524)
+||+++.+.+.
T Consensus 346 ~v~~~~~~~~~ 356 (369)
T TIGR02092 346 VIEPNVKIAGT 356 (369)
T ss_pred EECCCCEeCCC
Confidence 99999999775
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-50 Score=416.73 Aligned_cols=351 Identities=26% Similarity=0.465 Sum_probs=267.8
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.|+|||||||+||||+|||.++||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+. ++..++ .
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~-----d~~~~~-~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFG-----DGEGLG-V 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHh-----cccccC-C
Confidence 48999999999999999999999999999999 9999999999999999999999999999877775 322232 2
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.+.+..+.. .+|||++|+++.+++. .++|++++||++++.|+.+++++|+++.+..++....+.+
T Consensus 74 ~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 74 RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC
Confidence 355554333 3699999999999886 2899999999999999999999999998888888888776
Q ss_pred CCCCcceEEEECCC-CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009817 254 SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (524)
Q Consensus 254 ~~a~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~ 332 (524)
+ ..||++..+++ ++|.+|.|||..... .+++.++|+|+|++++|. +++. ....+|
T Consensus 139 ~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~~ 194 (358)
T COG1208 139 P--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFDF 194 (358)
T ss_pred C--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCcccc
Confidence 4 68999998844 599999999953110 357999999999999998 3222 234566
Q ss_pred hhhhHHhhhhcCc-eEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCC---CCCCCccCCCeEEcCeeeeceE
Q 009817 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP---FYTSPRFLPPTKIDNCRIKDAI 408 (524)
Q Consensus 333 ~~dii~~li~~~~-V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~---i~~~~~i~p~~~i~~~~i~~si 408 (524)
..+++|.++++.. +++|.++++|.|||||++|.+|+..+..............+ +.. +.+.+|++|+. ++.
T Consensus 195 ~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~~ 269 (358)
T COG1208 195 EEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GAK 269 (358)
T ss_pred hhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CCE
Confidence 7789999999986 99999999999999999999999999864432210000000 111 33333444332 344
Q ss_pred ECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCc
Q 009817 409 ISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 488 (524)
Q Consensus 409 Ig~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~ 488 (524)
|+++|.|+. +|+||++|+|+.+++|++|++|.+ +.||++++|.+|||+.||+||++.
T Consensus 270 i~~~~~i~~----~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~ 326 (358)
T COG1208 270 IGPGALIGP----YTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL 326 (358)
T ss_pred ECCCCEECC----CcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce
Confidence 444444442 589999999999999999999999 999999999999999999999922
Q ss_pred EEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 489 VIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 489 ~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
. --+ .....+..+..| +++++++.+..+++
T Consensus 327 -~--i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~ 356 (358)
T COG1208 327 -I--IGD-VVIGINSEILPG-VVVGPGSVVESGEI 356 (358)
T ss_pred -e--ecc-eEecCceEEcCc-eEeCCCccccCccc
Confidence 2 111 222223344333 45555555555443
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=388.29 Aligned_cols=328 Identities=20% Similarity=0.349 Sum_probs=256.5
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEecc-CchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~-~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+|||||||.||||+|||..+||||+||+|+ |||+|+++++.++|+++|+|++++ ..+++.+|+.. +..|+. .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-----~~~~~~-~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-----GERFGA-K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-----ccccCc-e
Confidence 589999999999999999999999999999 999999999999999999999999 88888888752 223431 1
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
+.++. +. +.+||++++++++.+++ .++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus 74 ~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~- 137 (353)
T TIGR01208 74 ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD- 137 (353)
T ss_pred EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 33332 21 23699999999998875 3689999999999999999999999999999999888765
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~ 332 (524)
+..|+++.+|++++|..|.|||..+. +.+.++|+|+|++.++. ++++..+. ...+
T Consensus 138 -~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~ 194 (353)
T TIGR01208 138 -PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELE 194 (353)
T ss_pred -hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEE
Confidence 45799988887789999999987542 36789999999997665 45543332 3344
Q ss_pred hhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEc-CeeeeceEEC
Q 009817 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 410 (524)
Q Consensus 333 ~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~-~~~i~~siIg 410 (524)
..++++.++++ .++++|.++++|.||||++||++||+.++++... .+ . ++.+.+.+.||++|+ +++|.+++|+
T Consensus 195 l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~-~---~i~~~~~i~~~~~i~~~~~i~~~~i~ 269 (353)
T TIGR01208 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EV-Q---GVDDESKIRGRVVVGEGAKIVNSVIR 269 (353)
T ss_pred HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-cc-C---CcCCCCEEcCCEEECCCCEEeCCEEE
Confidence 67899999877 5899999999999999999999999999985321 11 1 245566666777774 3666666666
Q ss_pred CCCEEC-ceEEeceEEcCCcEECCCCEEe-----ceEEeCCccccchhhHHhhhcCCccceEeCCC-cEEeeeEECCCCE
Q 009817 411 HGCFLR-ECTVEHSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVK 483 (524)
Q Consensus 411 ~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-----~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~-~~I~~~iI~~~~~ 483 (524)
.+|.|+ +|.|.+|+|+.+|.||++|+|+ +++++.+ +.|+.+ +.+.+|+|+++++
T Consensus 270 ~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred CCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCCE
Confidence 666666 4566666666666666666665 4555544 788877 4888899999999
Q ss_pred ECCCcEEeCC
Q 009817 484 IGKDVVIVNK 493 (524)
Q Consensus 484 Ig~~~~i~~~ 493 (524)
|+.++.|.+.
T Consensus 331 i~~~~~~~~~ 340 (353)
T TIGR01208 331 IKGNRRRPGD 340 (353)
T ss_pred ECCCcccccc
Confidence 9999888853
|
Alternate name: dTDP-D-glucose synthase |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=380.07 Aligned_cols=387 Identities=21% Similarity=0.291 Sum_probs=286.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|++++|||||||.|+||++ .+||||+|++|+ |||+|+|+++.++|+++|++++++..+++.+|+.+ +.
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~-----~~--- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAG-----DG--- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhcc-----CC---
Confidence 6678999999999999974 689999999999 99999999999999999999999998888777641 10
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
.+.++...+ .+||++++++++.++++ ..++|++++||+ +...++.++++.|.+.++++++++.
T Consensus 69 --~i~~~~~~~---------~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 69 --DVSFALQEE---------QLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred --ceEEEecCC---------CCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 244432211 25999999999998862 247899999998 4467899999999888888888887
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC-
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~- 328 (524)
+..+ +..|+.+.+|++++|..|.|||.....+ ..++++++|+|+|++++|.++++...+.
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 7655 3579999999999999999987432110 0236789999999999876666654322
Q ss_pred --CCchhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHHHHHHHHhhccC------CCccccCCCC-CCCCCCccCCC
Q 009817 329 --SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPKT-PFYTSPRFLPP 396 (524)
Q Consensus 329 --~~d~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~------~~~~~~~~~~-~i~~~~~i~p~ 396 (524)
...+..++++.++++ .++.+|.++++ |.|++|+++|++|++.+.... ....++++.. .+...+.++++
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 334567999999987 57999999988 999999999999988666432 1123455543 35566666666
Q ss_pred eEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCc--------c
Q 009817 397 TKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGK--------V 463 (524)
Q Consensus 397 ~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~--------~ 463 (524)
+.|. +|.|. +++||++|.|+ ++.|.+|+||++|+|+.++.|.++++..+..++....+ .+.++++. -
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~ 354 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETK 354 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcccc
Confidence 6664 36664 58889999998 68888899999999999998888888777666544322 22333330 0
Q ss_pred ceEeCCC------cEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 464 PIGVGRN------TKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 464 ~~~Ig~~------~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
.+.||++ ++|.+|+|++++.||.++++.|.+ ......++.+|+.+. +.||++++|++|++|
T Consensus 355 ~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 355 KIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 1223333 333467888999999998887654 224566677777664 477777777777764
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=377.34 Aligned_cols=386 Identities=19% Similarity=0.223 Sum_probs=282.1
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
+.++.+||||||.||||+| .+||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++.. + .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-------~ 69 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAE-L-------A 69 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 3567899999999999987 589999999999 99999999999999999999999988777766631 1 1
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
. .+.++... +..||+++++.++.++.+ ...++|++++||+ ++ ..++.++++.|++.++++++++.
T Consensus 70 ~-~~~~~~~~---------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 70 P-EVDIAVQD---------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred C-ccEEEeCC---------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 0 13333221 236999999999988752 1246799999998 44 46799999999888888888877
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC-
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~- 328 (524)
+.++ +..|+.+..|++|+|..|.|||.....+ ....++++|+|+|++++|..+++...+.
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 7665 4679999888899999999998854211 0124689999999999998777654332
Q ss_pred --CCchhhhhHHhhhhc-CceEEEEecCeEeecCCHHHH------HHHHHHhhccC---------CCccccCCCCCCCCC
Q 009817 329 --SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSF------YEANMALTKES---------PAFHFYDPKTPFYTS 390 (524)
Q Consensus 329 --~~d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~------~~An~~l~~~~---------~~~~~~~~~~~i~~~ 390 (524)
.+.+..|+++.++++ .+|++|.+++||.|+|+++.+ ..+|+.++... |...++++...+.+.
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~ 277 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRD 277 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCC
Confidence 345568999999987 589999999999999999888 55555444331 112223333334344
Q ss_pred CccCCCeEE------------c-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-H
Q 009817 391 PRFLPPTKI------------D-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-A 455 (524)
Q Consensus 391 ~~i~p~~~i------------~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~ 455 (524)
++|.|++.| + +|.|.+++||++|.|+++.+.+++||.++.||+++.|. ++++..+..++.++++ .
T Consensus 278 ~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~ 357 (482)
T PRK14352 278 VVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKN 357 (482)
T ss_pred cEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcc
Confidence 333333333 2 25555677777777776667788888888888888886 5555555556666543 5
Q ss_pred hhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 456 ~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.++++ +.|++.+.+.+|+||++|.||.++++.+.+ ......++..|+.+. +.||++++|++|++|
T Consensus 358 ~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v 432 (482)
T PRK14352 358 ATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVI 432 (482)
T ss_pred cEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEE
Confidence 567777 788888888999999999999999998764 123445555555443 378888888888764
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=355.94 Aligned_cols=382 Identities=21% Similarity=0.269 Sum_probs=309.8
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
++.+||||||.||||. +.+||-|.||+|+ ||++|+++.+...+.++|.+|+++..+++...+.+. .
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~--- 67 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------D--- 67 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------c---
Confidence 4689999999999997 4699999999999 999999999999999999999999999988777421 0
Q ss_pred eEEE-EccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCCcEEEEEEE
Q 009817 174 FVEV-LAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 174 ~V~v-l~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
.+++ ++.. ++||+||+++++++|.+ ....++||++||+ |... .+.+|++.|...++.+++++..
T Consensus 68 ~v~~v~Q~e----------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~ 134 (460)
T COG1207 68 DVEFVLQEE----------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAE 134 (460)
T ss_pred CceEEEecc----------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEE
Confidence 1222 3322 36999999999999942 2345799999999 5554 5788999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~--- 327 (524)
.++ |..||-+..+++|.|..+.|.....+.+ +.-...++|+|+|+...|.++|.....
T Consensus 135 ~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~ee-----------------k~I~eiNtGiy~f~~~~L~~~L~~l~nnNa 195 (460)
T COG1207 135 LDD--PTGYGRIVRDGNGEVTAIVEEKDASEEE-----------------KQIKEINTGIYAFDGAALLRALPKLSNNNA 195 (460)
T ss_pred cCC--CCCcceEEEcCCCcEEEEEEcCCCCHHH-----------------hcCcEEeeeEEEEcHHHHHHHHHHhccccc
Confidence 887 5789999999999999999987654321 123578999999999988887765432
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHHHHHHHHhhccC------CCcccc-------CCCCCCCCCC
Q 009817 328 TSNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFY-------DPKTPFYTSP 391 (524)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~------~~~~~~-------~~~~~i~~~~ 391 (524)
..+.|..|++..+-.+ .+|.++..+++ ..-+++-..|.+|++.|..+. ....++ +.+..+...+
T Consensus 196 qgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dv 275 (460)
T COG1207 196 QGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDV 275 (460)
T ss_pred cCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCce
Confidence 3567889999877665 68999998875 577889999999988776542 123333 3444555556
Q ss_pred ccCCCeEEc-------------CeeeeceEECCCCEECc-eEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-H
Q 009817 392 RFLPPTKID-------------NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-A 455 (524)
Q Consensus 392 ~i~p~~~i~-------------~~~i~~siIg~g~~I~~-~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~ 455 (524)
.|.|++.+. +|.|+||.|++||.|.. +.+++|.||.+|.||+.++|+ ++.+..+..++.|+|+ .
T Consensus 276 vI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~ 355 (460)
T COG1207 276 VIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKK 355 (460)
T ss_pred EEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEec
Confidence 666644442 25667788888888885 888999999999999999998 6666666999999998 9
Q ss_pred hhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 456 ~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.+++| +.+++-++|.+|.||+++.||++++..|.|. .+.++++.||+|+. +.||++++|++||+|
T Consensus 356 a~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 356 ATIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred ccccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 999999 9999999999999999999999999999993 37788899999886 489999999999987
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=372.50 Aligned_cols=381 Identities=19% Similarity=0.267 Sum_probs=257.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
++|+|||||||.||||+| .+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+. ..+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~--------~~~- 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQ--------GSG- 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc--------cCC-
Confidence 368999999999999987 489999999999 9999999999999999999999998887776653 111
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
+.++... +++||+++++.++.+++. ..++|++++||+ +...++.++++.|+++++++|+++.+
T Consensus 73 --i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~ 137 (481)
T PRK14358 73 --VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGE 137 (481)
T ss_pred --cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 4454322 246999999999888751 235799999998 44567999999999999999988887
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC---C
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~---~ 327 (524)
+++ ++.||++.+|++|+|.+|.|||..+..+ ....++++|+|+|+++++. +++... +
T Consensus 138 ~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~ 197 (481)
T PRK14358 138 LPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDNK 197 (481)
T ss_pred cCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCcc
Confidence 765 4569999999999999999998743210 0124689999999977532 333321 2
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHH-hhccCC-------CccccCCCCC-CCCCCccCCCe
Q 009817 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMA-LTKESP-------AFHFYDPKTP-FYTSPRFLPPT 397 (524)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~-l~~~~~-------~~~~~~~~~~-i~~~~~i~p~~ 397 (524)
..+.+..|+++.++++ .++++|.+.++|..++...+++.+++. ++.... .....+|... +.+.+.+++++
T Consensus 198 ~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~ 277 (481)
T PRK14358 198 AGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDV 277 (481)
T ss_pred CCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCC
Confidence 2334567999999887 479999999999999988888777765 332210 1111222111 12222223333
Q ss_pred EEc-C------------------eeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-H
Q 009817 398 KID-N------------------CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-A 455 (524)
Q Consensus 398 ~i~-~------------------~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~ 455 (524)
.|. + |.|.+|+|+++|.|+ ++.|.+++||+++.|+++++|. ++++.++..++.++++ .
T Consensus 278 ~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~ 357 (481)
T PRK14358 278 TIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKN 357 (481)
T ss_pred EEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECC
Confidence 332 1 333344444444444 3444444445555555554443 3444444444444443 3
Q ss_pred hhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 456 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 456 ~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.+.++ +.||+.+.+.+|+||+||.||.++++.|.. ....++++..|..+. ++||.++.|++|++|
T Consensus 358 ~~i~~~---~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 358 ARLDAG---VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred ceecCC---cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 444555 566666667789999999999999998864 123455566665553 367777777777754
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=366.89 Aligned_cols=377 Identities=20% Similarity=0.268 Sum_probs=268.0
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|+|||||||.||||+| .+||||+||+|+ |||+|+++++.++|+++|+|++++..+.+.+|+. . ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~-~-------~~--- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALA-N-------RD--- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhc-C-------CC---
Confidence 6899999999999997 689999999999 9999999999999999999999998888777663 1 22
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++...+ ..||++++++++.+++ ..++|++++||+ ++ ..++.++++.|.+. ..++++.+.+
T Consensus 66 i~~~~~~~---------~~G~~~ai~~a~~~l~-----~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~ 129 (451)
T TIGR01173 66 VNWVLQAE---------QLGTGHAVLQALPFLP-----DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP 129 (451)
T ss_pred cEEEEcCC---------CCchHHHHHHHHHhcC-----CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC
Confidence 34433221 2499999999998885 236899999998 33 46789999988764 3677776664
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---C
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~---~ 329 (524)
+ +..|+.+..|++|+|..|.|||...... ...+.+++|+|+|++++|..+++...+. .
T Consensus 130 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~ 190 (451)
T TIGR01173 130 D--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQG 190 (451)
T ss_pred C--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccC
Confidence 3 4569999999889999999998643210 0125789999999999987766653322 2
Q ss_pred CchhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHHHHHHHHhhccCCC------ccc-------cCC------CCCC
Q 009817 330 NDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA------FHF-------YDP------KTPF 387 (524)
Q Consensus 330 ~d~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~~~------~~~-------~~~------~~~i 387 (524)
+.+..++++.++++ .++++|.++++ |.+++|++++..++..+..+.+. ..+ +.+ ...|
T Consensus 191 e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i 270 (451)
T TIGR01173 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEI 270 (451)
T ss_pred cEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEE
Confidence 34567899999887 57999999988 99999999999987765532110 011 111 1122
Q ss_pred CCCC------ccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhh
Q 009817 388 YTSP------RFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASL 457 (524)
Q Consensus 388 ~~~~------~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~ 457 (524)
.+.+ .+++++.|+ +|.|.+++|+++|.|+ ++.+.+++||.+|.||++++|. ++++.++..++..+++ .+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 2222 222233332 2445566666666666 5666667777777777777775 4555555555555544 356
Q ss_pred hcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 458 ~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
++++ +.|++.+.|.+|.||+|+.||.++++.+.+ ......++.+|+.|. +.||++++|++|++|
T Consensus 351 ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 351 IGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTV 423 (451)
T ss_pred ECCC---cEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEE
Confidence 6666 667777777789999999999999998754 124455667777663 478889999988875
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=365.02 Aligned_cols=379 Identities=18% Similarity=0.259 Sum_probs=279.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|+.|++||||||.||||++ .+||||+|++|+ |||+|+++++.++|+++|++++++..+++.+|+. .+
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~-----~~---- 69 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLA-----DE---- 69 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhc-----cC----
Confidence 4578999999999999983 689999999999 9999999999999999999999998777766653 11
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
.++++.... .+||+++++.++.++. ..+.||+++||+ +...++.++++.|.+.+ +++++.
T Consensus 70 --~~~~i~~~~---------~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~ 131 (456)
T PRK09451 70 --PLNWVLQAE---------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTV 131 (456)
T ss_pred --CcEEEECCC---------CCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEE
Confidence 134443221 2599999999988874 237899999998 45678999998886543 456666
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC--
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~-- 327 (524)
+.++ ++.||++.. ++++|..|.|||.....+ ....++++|+|+|++++|.++++...+
T Consensus 132 ~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~ 191 (456)
T PRK09451 132 KLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNN 191 (456)
T ss_pred EcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCcc
Confidence 6554 467998754 578999999999642210 013578999999999999877765433
Q ss_pred -CCCchhhhhHHhhhhc-CceEEEE------ecCe--EeecCCHHHHHHHHHH--h-hcc----CCC-cc----------
Q 009817 328 -TSNDFGSEIIPAAIME-HDVQAYI------FRDY--WEDIGTIKSFYEANMA--L-TKE----SPA-FH---------- 379 (524)
Q Consensus 328 -~~~d~~~dii~~li~~-~~V~~y~------~~~~--w~dIgt~~d~~~An~~--l-~~~----~~~-~~---------- 379 (524)
..+.+..|+++.++++ .++.+|. +.|| |.|++++++|+++|+. + ... .|. +.
T Consensus 192 ~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~ 271 (456)
T PRK09451 192 AQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRD 271 (456)
T ss_pred ccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCC
Confidence 2445678999999988 5899996 4566 7889999999999852 2 211 121 10
Q ss_pred -ccCCCCCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-
Q 009817 380 -FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI- 454 (524)
Q Consensus 380 -~~~~~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~- 454 (524)
.+.+...+...+.+++++.|+ +|.|.+++|+++|+|+ ++.+++|+||.++.|++++.|. ++.+.++..++.++++
T Consensus 272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~ 351 (456)
T PRK09451 272 VEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMK 351 (456)
T ss_pred CEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeee
Confidence 222333344344455555553 3667788888888888 6778888888888888888886 6777777777777666
Q ss_pred HhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC-C---CCCCCCceEEecCcE-----EEcCCCEeCCCccc
Q 009817 455 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD-E---ADRPELGFYIRSGIT-----IIMEKATIEDGMVI 524 (524)
Q Consensus 455 ~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~-e---~~~~~~~~~i~~g~~-----vv~~~~~i~~gtvI 524 (524)
.+.++++ +.+++.+.+.+|.||++|.||.++++.+.+ . ...++++.+|+.+.+ .||.+++|++|++|
T Consensus 352 ~~~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v 427 (456)
T PRK09451 352 KARLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTV 427 (456)
T ss_pred ceeeCCC---CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEE
Confidence 6677777 778888888899999999999999998764 1 244666666665532 67777777777764
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=358.74 Aligned_cols=371 Identities=19% Similarity=0.264 Sum_probs=278.1
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.++|||||||.||||+| .+||||+||+|+ |||+|+++.+.++ +++|.|++++..+++.+|+.+.+ .
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~-------~-- 67 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF-------P-- 67 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC-------C--
Confidence 46899999999999987 699999999999 9999999999987 78999999999999988875311 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.++++...+. .+.||+++++++.. ..++||+++||..+. ..+.++.+.+.++++++++.+.++
T Consensus 68 ~v~~~~~~~~-------~~~gt~~al~~~~~--------~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~ 130 (430)
T PRK14359 68 GVIFHTQDLE-------NYPGTGGALMGIEP--------KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD 130 (430)
T ss_pred ceEEEEecCc-------cCCCcHHHHhhccc--------CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC
Confidence 2555532211 23699999987421 247999999998442 234555566667888888887765
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---CCC
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSN 330 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~---~~~ 330 (524)
+..|+.+..| +|+|..+.|||...... ...+..++|+|+|++++|..+++.... ..+
T Consensus 131 --~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e 190 (430)
T PRK14359 131 --PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKE 190 (430)
T ss_pred --CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCc
Confidence 4569988775 68999999988643100 013578999999999999876654321 133
Q ss_pred chhhhhHHhhhhc-CceEEEEec-CeEeecCCHHHHHHHHHHhhccCC-C------------ccccCCCCCCCCCCccCC
Q 009817 331 DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP-A------------FHFYDPKTPFYTSPRFLP 395 (524)
Q Consensus 331 d~~~dii~~li~~-~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~~~~-~------------~~~~~~~~~i~~~~~i~p 395 (524)
.+..|+++.+++. .++.+|.++ ++|.||+|++||..|+..+..+.. . -.++++...+.....+++
T Consensus 191 ~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~ 270 (430)
T PRK14359 191 YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEE 270 (430)
T ss_pred eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECC
Confidence 4567889888876 689999997 589999999999999876654321 0 012233444555556666
Q ss_pred CeEEc-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe
Q 009817 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (524)
Q Consensus 396 ~~~i~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~ 474 (524)
+++|. ++.|.+++|+++|.|+++.+++|+||++++|++++.|+++.+.....++. +++ ++ +.||+++.|.
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~-----~~~-~~---~~i~~~~~i~ 341 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKN-----AKL-NG---VKAGHLSYLG 341 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcc-----cEe-cc---cccccccccc
Confidence 77774 47778999999999998899999999999999999998887776642222 344 67 8999999999
Q ss_pred eeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 475 NCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+|+||++|.||.++++.+.+. ....+++.+|+.+. +.||++++|++|++|
T Consensus 342 d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 342 DCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred CCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 999999999999999988752 24556667776663 477888888888764
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=333.41 Aligned_cols=358 Identities=23% Similarity=0.368 Sum_probs=278.9
Q ss_pred ceeEEEEeCC--CCCcccCCccCCCccceeecCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 94 NVAAIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 94 ~m~aVILAaG--~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
.++||||.|| +||||+||+...||||+||+|. |||+|.++.|.+ +|..+|+++--|..+.+.+++.+.- + .|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~--~--e~ 76 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ--Q--EF 76 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH--h--hc
Confidence 4689999999 6999999999999999999999 999999999998 5999999998888777777775321 1 23
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
. -.|.++.++.+ +|||++|..+++.+-. ...+.|+++++|+.+++++.+|++.|+..++.+++++.+
T Consensus 77 ~-~pvrYL~E~~p---------lGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 77 K-VPVRYLREDNP---------LGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTK 143 (407)
T ss_pred c-cchhhhccCCC---------CCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEE
Confidence 2 12666766554 6999999999988752 456899999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEEC-CCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh---h-
Q 009817 251 VGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---R- 325 (524)
Q Consensus 251 ~~~~~a~~~g~v~id-~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~---~- 325 (524)
+..+.+++||.+..| .+|+|+++.|||.... +++.++|+|+|++++|..+-+- .
T Consensus 144 vs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~ 202 (407)
T KOG1460|consen 144 VSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQ 202 (407)
T ss_pred ecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHH
Confidence 998889999999888 7899999999999763 5789999999999998754221 0
Q ss_pred --------C----CCCCch---hhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCC---CC
Q 009817 326 --------Y----PTSNDF---GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKT---PF 387 (524)
Q Consensus 326 --------~----~~~~d~---~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~---~i 387 (524)
. +...|| ..|++..++.++++++|..+++|..|.|+-+-+.||+.++.+... +++.. .=
T Consensus 203 ~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~---t~p~~Lak~p 279 (407)
T KOG1460|consen 203 DLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKR---THPARLAKGP 279 (407)
T ss_pred hhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhh---cCchhhcCCC
Confidence 0 112333 358999999999999999999999999999999999999875421 11110 00
Q ss_pred CCCCccCCCeEEcCeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEe
Q 009817 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (524)
Q Consensus 388 ~~~~~i~p~~~i~~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~I 467 (524)
.+.+.|..+++|+. .+.+.+.+.|+. |+.||.+++||+|++|++|+|+++ +.|
T Consensus 280 gt~a~IigdVyIhP----sakvhptAkiGP----NVSIga~vrvg~GvRl~~sIIl~d-------------------~ei 332 (407)
T KOG1460|consen 280 GTQAEIIGDVYIHP----SAKVHPTAKIGP----NVSIGANVRVGPGVRLRESIILDD-------------------AEI 332 (407)
T ss_pred CCCceEEeeeEEcC----cceeCCccccCC----CceecCCceecCCceeeeeeeccC-------------------cEe
Confidence 11233444455543 345555666663 467888999999999999999999 899
Q ss_pred CCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 468 GRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 468 g~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
.+|+.+-+||||.++.||+++.+....-..++.-.+ + -.++.|..+.++|-++
T Consensus 333 ~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~-~--a~Tilga~v~v~dev~ 385 (407)
T KOG1460|consen 333 EENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPF-A--ALTILGADVSVEDEVI 385 (407)
T ss_pred eccceEEeeeecccccccceeeecccccccCCCCCc-c--eeEEecccceecceeE
Confidence 999999999999999999999999875111111111 1 3356666666666554
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=355.00 Aligned_cols=381 Identities=17% Similarity=0.215 Sum_probs=257.4
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.+.|||||||.||||+ ..+||||+|++|+ |||+|++++|...++++|+|++++..+.+.+++. . .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~---~--- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFP-----D---E--- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcc-----c---c---
Confidence 5789999999999997 4689999999999 9999999999999999999999998777654442 1 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.++++..+. ..||+++++.+++++++ ...++|++++||+ ++ ..++.++++.|. ++++++.+.+.
T Consensus 70 ~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~ 135 (456)
T PRK14356 70 DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL 135 (456)
T ss_pred CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc
Confidence 134443221 25999999999988863 2347899999998 44 456899998875 66788888777
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---C
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~---~ 328 (524)
++ +..||.+.. ++|+|..|.|||....... ...+.++++|+|+|++++|..+++...+ .
T Consensus 136 ~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~ 197 (456)
T PRK14356 136 PD--PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANKS 197 (456)
T ss_pred CC--CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCcccC
Confidence 65 457998877 5789999999986431100 0013578999999999998776654322 2
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecC--eEeecCCHHHHHHHHHHhhccCC------Ccc-------ccCCCCCCCCC--
Q 009817 329 SNDFGSEIIPAAIME-HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESP------AFH-------FYDPKTPFYTS-- 390 (524)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~y~~~~--~w~dIgt~~d~~~An~~l~~~~~------~~~-------~~~~~~~i~~~-- 390 (524)
.+.+..++++.+++. .++++|.+.+ .|.+|+|++||..|+..+..+.. ... .+++...+.++
T Consensus 198 ~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~ 277 (456)
T PRK14356 198 GEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAE 277 (456)
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCE
Confidence 345667889888765 5799999876 57999999999999877765421 011 11111111111
Q ss_pred ----------CccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hh
Q 009817 391 ----------PRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (524)
Q Consensus 391 ----------~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~ 456 (524)
+.+++++.|+ +|.|.+++|+++|.|+ ++.|.+|+||.+|.||++++|. ++++.++..++..+++ .+
T Consensus 278 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~ 357 (456)
T PRK14356 278 IYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKA 357 (456)
T ss_pred EeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeee
Confidence 2223333332 2444455555555555 3555556666666666666664 4455555555555444 34
Q ss_pred hhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+++++ +.|++++++.+|+||+++.||.++++.+.+. ..+..++.+++.+. +.||++++|++|++|
T Consensus 358 ~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v 431 (456)
T PRK14356 358 VLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVI 431 (456)
T ss_pred EecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 55555 5666666666788888888888887766541 23445555555443 367888888888764
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=351.14 Aligned_cols=379 Identities=20% Similarity=0.234 Sum_probs=258.6
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|+++.|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++.+ + +
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~-------~ 70 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I-------A 70 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 5678999999999999984 589999999999 99999999999999999999999988888777641 1 1
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
. .+.+.... +..|++++++.++.++++ ..++|++++||+ +++ .++.++++ |.+.++++++.+.
T Consensus 71 ~-~~~~~~~~---------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~ 135 (446)
T PRK14353 71 P-DAEIFVQK---------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGF 135 (446)
T ss_pred C-CceEEEcC---------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEE
Confidence 0 12222211 125999999999888752 247899999998 554 45788887 4455677888777
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC--
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~-- 327 (524)
+..+ +..||.+.. ++++|..+.|||+....+ ....++++|+|+|+++.|..+++....
T Consensus 136 ~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 195 (446)
T PRK14353 136 RAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDN 195 (446)
T ss_pred EeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccC
Confidence 7654 457988877 578999999998643210 012578999999999887667765432
Q ss_pred -CCCchhhhhHHhhhhc-CceEEEEec-CeEeecCCHHHHHHHHHHhhccC-------------CCccccCCCCCCCCCC
Q 009817 328 -TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSP 391 (524)
Q Consensus 328 -~~~d~~~dii~~li~~-~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~~~-------------~~~~~~~~~~~i~~~~ 391 (524)
....+..++++.++++ .++++|.++ ++|.||+||+||..|+..+..+. +...++.+.+.|.+++
T Consensus 196 ~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 275 (446)
T PRK14353 196 AKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDV 275 (446)
T ss_pred CCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCC
Confidence 1334567888888876 579999987 56999999999999996553221 1111223333444444
Q ss_pred ccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-HhhhcCCccceEeC
Q 009817 392 RFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAEGKVPIGVG 468 (524)
Q Consensus 392 ~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~~~g~~~~~Ig 468 (524)
.+.|++.|++ ++.||++|.|+ ++.|.+|+||.+|+||+++.|. ++++.+++.+++..++ .+.++++ +.|+
T Consensus 276 ~i~~~~~I~~----~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~ 348 (446)
T PRK14353 276 VIEPNVVFGP----GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKVN 348 (446)
T ss_pred EECCCCEECC----CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---CEEC
Confidence 4444444432 45566666665 4555666666666666666665 5555555555554433 3444444 6777
Q ss_pred CCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 469 RNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 469 ~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+++.+.+++||++|.||.++++.+.+. .....++..|+.|. +.||+++.|++|++|
T Consensus 349 ~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 349 HLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVI 413 (446)
T ss_pred CeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEE
Confidence 777788888888888888887766431 12333444444442 356777777777654
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=348.83 Aligned_cols=372 Identities=22% Similarity=0.249 Sum_probs=260.9
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|+|||||||.||||++ .+||||+|++|+ |||+|+++++.+.+ ++|+|++++..+.+.+|+. .+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~-----~~------- 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLP-----EW------- 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcc-----cc-------
Confidence 6899999999999974 689999999999 99999999999975 8999999998877765542 21
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++. +. ..+||+++++.++.+++ ..++|++++||. +...++.++++.|+++++++++++.+.+
T Consensus 64 ~~~~~--~~-------~~~g~~~ai~~a~~~l~-----~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~ 129 (448)
T PRK14357 64 VKIFL--QE-------EQLGTAHAVMCARDFIE-----PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE 129 (448)
T ss_pred cEEEe--cC-------CCCChHHHHHHHHHhcC-----cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC
Confidence 23332 11 13699999999998875 247899999997 5567899999999988999999988876
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---C
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~---~ 329 (524)
+ +..||.+..| +++| .+.|||..+... ...+++++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~ 188 (448)
T PRK14357 130 D--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKG 188 (448)
T ss_pred C--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCC
Confidence 5 4579998887 6788 888877533110 0125789999999999987776653322 2
Q ss_pred CchhhhhHHhhhhcCceEEEEecCe--EeecCCHHHHHHHHHHhhcc------CCCcc-------ccCCCCCCCCCCccC
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE------SPAFH-------FYDPKTPFYTSPRFL 394 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~------~~~~~-------~~~~~~~i~~~~~i~ 394 (524)
..+..|+++.+ .++.+|.+.++ |.+++++++|..+...+... .+... ++++.+.|..++.+.
T Consensus 189 ~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~ 265 (448)
T PRK14357 189 EYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIY 265 (448)
T ss_pred eEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEc
Confidence 23445777766 35889999998 66777999998877655321 01112 223333344444444
Q ss_pred CCeEEc-------------CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhhhc
Q 009817 395 PPTKID-------------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLA 459 (524)
Q Consensus 395 p~~~i~-------------~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~~ 459 (524)
|++.|. +|.|.+|+||+||.|..+.+.+|+|+.++.|+++++|+ ++++.++..++..+++ .+.++
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 433332 24444566666666665666677777777777777774 3556665555555444 34556
Q ss_pred CCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 460 ~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
++ +.+++.+++.+++||+||.||.++++.+.. ....+.++.+|+.+. +.||+++.|++|++|
T Consensus 346 ~~---~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 346 EN---TKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred CC---cCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 66 566666677788899999999998887654 124566677777664 477888888888765
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=347.61 Aligned_cols=380 Identities=23% Similarity=0.295 Sum_probs=269.9
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.++|||||||.|+||++ .+||||+||+|+ |||+|+++++.++|++++++++++..+++.+|+. .+
T Consensus 2 ~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~-----~~------ 66 (458)
T PRK14354 2 NRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLG-----DR------ 66 (458)
T ss_pred CceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc-----CC------
Confidence 46899999999999974 699999999999 9999999999999999999999998888766653 21
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-e-cccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l-~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.++... +..||++++++++.++++ ..+.|++++||. + ...++.++++.|.+.+++.++++.+.
T Consensus 67 -~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~ 132 (458)
T PRK14354 67 -SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA 132 (458)
T ss_pred -cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc
Confidence 2222211 135999999999988852 236799999997 3 35678999999988888888887766
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--- 328 (524)
++ +..|+.+..|++++|..+.|||..... . ...+++++|+|+|+++.|...++.....
T Consensus 133 ~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~---------------~--~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 193 (458)
T PRK14354 133 EN--PTGYGRIIRNENGEVEKIVEQKDATEE---------------E--KQIKEINTGTYCFDNKALFEALKKISNDNAQ 193 (458)
T ss_pred CC--CCCceEEEEcCCCCEEEEEECCCCChH---------------H--hcCcEEEEEEEEEEHHHHHHHHHHhCccccC
Confidence 54 456898888888999999998853110 0 0235789999999998766666553321
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHHHHHHHHhhccC------CCccccCCC-------CCCCCCCc
Q 009817 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-------TPFYTSPR 392 (524)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~------~~~~~~~~~-------~~i~~~~~ 392 (524)
.+.+..++++.+++. .++++|.++++ |+++++++||..|+..+..+. +...+++++ ..+.+.+.
T Consensus 194 ~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~ 273 (458)
T PRK14354 194 GEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTV 273 (458)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCE
Confidence 233456888888876 57999999976 567789999999986553211 122333332 22333333
Q ss_pred cCCCe------------EEc-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhh
Q 009817 393 FLPPT------------KID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASL 457 (524)
Q Consensus 393 i~p~~------------~i~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~ 457 (524)
+.|++ .|. ++.|.+++|+++|.|+++.+.+|+||.+|+||++|.|. ++++..+..++..+++ .+.
T Consensus 274 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~ 353 (458)
T PRK14354 274 IEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKST 353 (458)
T ss_pred EeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeE
Confidence 33322 221 24445667777777776677778888888888888887 6666666666666555 455
Q ss_pred hcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 458 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 458 ~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
++++ +.|++.+.+.+|+||+|+.||.++.+.|.+. .....++.+|+.+. +.||++++|++|++|
T Consensus 354 i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v 426 (458)
T PRK14354 354 IGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTI 426 (458)
T ss_pred ECCC---CEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEE
Confidence 6666 6677777778888889999999988877541 12334444554442 477888888888765
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=315.24 Aligned_cols=234 Identities=26% Similarity=0.423 Sum_probs=202.6
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|++||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.|+++++..... +..+++|.+|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~----~~llGdgs~~g--- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTF----KELLGDGSDFG--- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhh----hhhhcCccccC---
Confidence 7999999999999999999999999999999 999999999999999999999998654322 23357888998
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
+.+.++.|+. +.|.|+|+..+.+++. .++|+++.||.++..++.++++.+.++.++.++++.++++
T Consensus 73 v~itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d- 138 (286)
T COG1209 73 VDITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD- 138 (286)
T ss_pred cceEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC-
Confidence 5666666764 3699999999999986 4999999999988779999999999888899999999997
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~ 332 (524)
+++||++++|++|+|+.+.|||..++ |+++-+|+|+|+++++. .++.-.|+ .+.-
T Consensus 139 -P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElE 195 (286)
T COG1209 139 -PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELE 195 (286)
T ss_pred -cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceE
Confidence 57899999999999999999999875 68999999999999997 45655554 2333
Q ss_pred hhhhHHhhhhcC-ceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 333 GSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 333 ~~dii~~li~~~-~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
.+|+++.+++++ .+......|.|.|.||++||++|+..+..
T Consensus 196 ITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 196 ITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred ehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 578999999884 66777778899999999999999998876
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=337.05 Aligned_cols=378 Identities=20% Similarity=0.244 Sum_probs=274.3
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.+||||||.|+||++ .+||||+|++|+ |||+|+++++.++|+++++|++++..+++.+|+.+ ++ .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~--------~~--~ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAH--------LP--G 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcc--------cC--C
Confidence 6799999999999985 689999999999 99999999999999999999999988777766631 11 2
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++... ++.|++++++.++.++++ ..+++++++||+ +...++.++++.|++.++++++++.+.+
T Consensus 68 i~~v~~~---------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 134 (450)
T PRK14360 68 LEFVEQQ---------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP 134 (450)
T ss_pred eEEEEeC---------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 4555322 135999999999888752 236799999998 4456799999999998888888777766
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---C
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~---~ 329 (524)
+ +..||.+.+|++|+|..|.|||...... ..++++++|+|+|+++.|.++++...+. .
T Consensus 135 ~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~ 195 (450)
T PRK14360 135 N--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQK 195 (450)
T ss_pred C--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCC
Confidence 5 4569999999999999999998642110 0246889999999999988877654432 3
Q ss_pred CchhhhhHHhhhhcCceEEEEecCe--EeecCCHHHHHHHHHHhhccC------CCccccCC------------------
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP------------------ 383 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~------~~~~~~~~------------------ 383 (524)
+.+.++.++.+. ++..|.+.++ |..+++++++..+...+.... +...++++
T Consensus 196 e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~ 272 (450)
T PRK14360 196 EYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIE 272 (450)
T ss_pred ceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEEC
Confidence 345567776663 3667777776 456999999999877654321 11112222
Q ss_pred -CCCCCCCCccCCCeEEc-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhhhc
Q 009817 384 -KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLA 459 (524)
Q Consensus 384 -~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~~ 459 (524)
...+.+...+++++.|. ++.|.+++|+++|.|+.+.+.+|+||++|.|+++|.|. ++++.+++.++..+.+ .+.++
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~ 352 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLG 352 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccC
Confidence 12222233344444442 35666788888888877778889999999999999997 6777777777766654 56777
Q ss_pred CCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 460 ~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
++ +.|++++++.+++|+++|.||.++++.+.+ ......++..|+.+. +.||.++.|++|+++
T Consensus 353 ~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v 423 (450)
T PRK14360 353 EG---SKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTI 423 (450)
T ss_pred CC---cEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEE
Confidence 77 777788888888999999999999888743 123444455555442 356666666666653
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=323.03 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=192.5
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-h------
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F------ 164 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~------ 164 (524)
|.+|+|||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++|+++|+|+++|.++++.+|+...| +
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 5689999999999999999999999999999999 9999999999999999999999999999998885322 1
Q ss_pred ----------cCCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc-------
Q 009817 165 ----------GNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (524)
Q Consensus 165 ----------~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~------- 227 (524)
..+..++ +.+....|. +++|||+||++++.+++ .++|++++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 1111122 233222232 35799999999999885 26899999999987
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEE----CCCCc---EEEEEecCCcccccccccccccccCCcccc
Q 009817 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI----DNMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (524)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~i----d~~g~---V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~ 299 (524)
+++.++++.|.++++.+ +++.++.+ .++.||++.+ |++|+ |..|.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 58999999998777765 44444432 2678999998 44564 5899999964421
Q ss_pred ccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 300 ~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
..++++++|+|+|++++|.. ++...+. .+....|+++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWAE-LERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 12478999999999998874 4543332 22345699999999999999999999999999999999999875
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=312.03 Aligned_cols=241 Identities=34% Similarity=0.588 Sum_probs=193.5
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeE-EEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I-~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
||||||||.||||+|||..+||||+|++|+||||+|+|++|.++|+++| +|+++++.+++.+|+.. ..+++ ..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~-----~~~~~-~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGS-----GYKFG-VK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTT-----SGGGT-EE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccc-----ccccc-cc
Confidence 6999999999999999999999999999999999999999999999995 55555777788777752 22333 12
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
++++..... .||++||++++..+++. ...++|++++||++++.++.++++.|++++++.++++...+..
T Consensus 75 i~~i~~~~~---------~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (248)
T PF00483_consen 75 IEYIVQPEP---------LGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE 143 (248)
T ss_dssp EEEEEESSS---------SCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS
T ss_pred ceeeecccc---------cchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhcccccccccccccccc
Confidence 444432222 49999999999999731 0023599999999999999999999999998654444444444
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHH--hhCCCCCch
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDF 332 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~--~~~~~~~d~ 332 (524)
.++.||++.+|++|+|.+|.|||..+.. +.++++|+|+|++++|..+++ .......++
T Consensus 144 ~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~ 203 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDF 203 (248)
T ss_dssp GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHH
T ss_pred ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhH
Confidence 4688999999999999999999986531 468999999999999987755 233346677
Q ss_pred hhhhHHhhhhcC-ceEEEEecC--eEeecCCHHHHHHHHHHhhc
Q 009817 333 GSEIIPAAIMEH-DVQAYIFRD--YWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 333 ~~dii~~li~~~-~V~~y~~~~--~w~dIgt~~d~~~An~~l~~ 373 (524)
..++++.+++++ .+.+|.+++ +|.|||||++|++||+.+++
T Consensus 204 l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 204 LTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 889999999986 566889999 79999999999999999875
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=315.46 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=193.7
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hc-----
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~----- 165 (524)
|++|+|||||||.||||+|||+.+||||+||+|+ |+|+|+++++.++||++|+|++++..+++.+|+...| +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 6789999999999999999999999999999999 9999999999999999999999999999999985322 10
Q ss_pred -----------CCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc-------
Q 009817 166 -----------NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (524)
Q Consensus 166 -----------~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~------- 227 (524)
....++ +++....|.. ++||++|+++++.++. .++|++++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000112 2332333322 3699999999999884 36899999999986
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEEC----CCC---cEEEEEecCCcccccccccccccccCCcccc
Q 009817 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (524)
Q Consensus 228 -~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id----~~g---~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~ 299 (524)
.|+.++++.|.+.+++.+++ ....+ .++.||++.+| ++| +|..|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~-~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLA-KRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEE-EECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 58999999999888775444 44332 46789999996 356 78999999964321
Q ss_pred ccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 300 ~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
..++++++|+|+|++++|..+.+ ..+. ...+..++++.+++++++.+|.++|+|+|||+|++|.+|+.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 02468999999999999886544 3232 33456799999999999999999999999999999999999983
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=312.20 Aligned_cols=349 Identities=18% Similarity=0.303 Sum_probs=249.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~-~~~l~~hl~~~y~~~~~~~ 170 (524)
|.+++|||+|||.||||--+|.+.||||+||||+ |||+|+|++|.++|+++|+|++... ...|+..+...+ .-..+
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~~~- 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLKKR- 83 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccccc-
Confidence 7789999999999999988999999999999999 9999999999999999999999873 334544443222 11111
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
. ..|++-...+. -.|||++|+.....+. .++||+++||.+.++++..++++++..++...++...
T Consensus 84 ~-~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~ 148 (433)
T KOG1462|consen 84 P-DYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGN 148 (433)
T ss_pred c-cEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcc
Confidence 0 11333222222 1599999999988886 3799999999999999999999999877654444332
Q ss_pred cCC------C---CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHH
Q 009817 251 VGE------S---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (524)
Q Consensus 251 ~~~------~---~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~l 321 (524)
... . +...+.++.++++..-..|...-. ...+.+.+..++|+..|... ..+.+.++.+|+|+.++++.|
T Consensus 149 ~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~-d~~~~l~i~~slL~~~prlt-l~t~L~dahiY~~k~~v~d~l 226 (433)
T KOG1462|consen 149 ALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSA-DEEEPLVIRKSLLWNHPRLT-LTTKLVDAHIYVFKHWVIDLL 226 (433)
T ss_pred ccccccccCcccccccccceeeeccccceeEEeecCC-cCCCceehhhhhhhcCCceE-EeccccceeeeeeHHHHHHHH
Confidence 211 1 112456777777665555554332 22345677778888888763 367899999999999999855
Q ss_pred HHhhCCCCCchhhhhHHhhhhc---------------------------------CceEEEEec--CeEeecCCHHHHHH
Q 009817 322 LRWRYPTSNDFGSEIIPAAIME---------------------------------HDVQAYIFR--DYWEDIGTIKSFYE 366 (524)
Q Consensus 322 l~~~~~~~~d~~~dii~~li~~---------------------------------~~V~~y~~~--~~w~dIgt~~d~~~ 366 (524)
-+. ++-.+|-.+++|.++++ -++++|... .-+..++|.-.|++
T Consensus 227 ~~~--~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~e 304 (433)
T KOG1462|consen 227 SEK--ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYME 304 (433)
T ss_pred hcC--CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHh
Confidence 332 22223444555555432 233444443 34778999999999
Q ss_pred HHH--HhhccCCCccccCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEe
Q 009817 367 ANM--ALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVML 443 (524)
Q Consensus 367 An~--~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~ 443 (524)
+|+ .+..-.+.-.+ +....... ..++ .+++|+++|.|+ ++.|..|+||.+|.||++++|.+|++|
T Consensus 305 iN~~k~~~~l~~e~~~------~k~~~~~~--~l~g----~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm 372 (433)
T KOG1462|consen 305 INRDKKLKKLCSEAKF------VKNYVKKV--ALVG----ADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILM 372 (433)
T ss_pred hhHHHHHHHhcccccc------ccchhhhe--eccc----hhhccCCCceecccceeeeeeecCCccccCCcEEEeeEee
Confidence 994 44332221111 11100000 1111 378899999999 788899999999999999999999999
Q ss_pred CCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
++ +.||+++.|+|||||.+|.||.++.+.||
T Consensus 373 ~n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 373 DN-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred cC-------------------cEecCCcceecceecccceecCCCeeeee
Confidence 99 99999999999999999999999999997
|
|
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=306.20 Aligned_cols=235 Identities=22% Similarity=0.370 Sum_probs=193.0
Q ss_pred EEEEeCC--CCCcccCCccCCCccceeecCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 97 AIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 97 aVILAaG--~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
||||||| .||||+|||..+||||+||+|+ |||+|+|+++.+ +|+++|+|++++..+++.+|+.... ..++ .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~----~~~~-~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ----QEFN-V 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc----cccC-c
Confidence 5899999 8999999999999999999999 999999999999 6999999999999999988885211 1122 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.+.++. +.. .+||+++++.++.+++. ...++|+|++||++++.++.++++.|+++++++|+++.+++.
T Consensus 75 ~i~~~~--~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 75 PIRYLQ--EYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred eEEEec--CCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 233332 221 26999999999998852 124789999999999999999999999999999999988754
Q ss_pred CCCCcceEEEEC-CCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC-----
Q 009817 254 SRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP----- 327 (524)
Q Consensus 254 ~~a~~~g~v~id-~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~----- 327 (524)
+.+..||++.+| ++|+|..|.|||.... +.++++|+|+|++++|..+ ....+
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e 200 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQE 200 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhccccccc
Confidence 456789999998 6799999999987432 3689999999999998654 33221
Q ss_pred -------------CCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHh
Q 009817 328 -------------TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 328 -------------~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l 371 (524)
...++..++++.++++.++++|.++|||.||||+++|++||+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 201 AQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 11235579999999999999999999999999999999999864
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=317.17 Aligned_cols=381 Identities=18% Similarity=0.318 Sum_probs=283.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
...++||+||.-+-|||+|+|...|+.|+|+.|. |||+|+|++|..+|+.+++|+++-++.++++|+.+.-|.....+-
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccce
Confidence 3568999999999999999999999999999999 999999999999999999999999999999999763333322221
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHc-----CCcEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR-----DADITI 246 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~-----~ad~tl 246 (524)
.+.+... . ....+|++|.... ++...++|++++||++.+++|.++++.|+++ ++-+||
T Consensus 101 --v~ti~s~-~---------~~S~GDamR~id~-----k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 101 --VVTICSG-E---------SRSVGDAMRDIDE-----KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred --EEEEcCC-C---------cCcHHHHHHHHHh-----cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 1222221 1 2478999987642 2344689999999999999999999999654 345777
Q ss_pred EEEEcCCCCC-CcceEEEECC-CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 247 SCAAVGESRA-SDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 247 ~~~~~~~~~a-~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
+..+.. .+. .+-.++.+|. +.++..|.+--.. ....+.+.++|--.+ ....+.++.+++|-+++++++. |+..
T Consensus 164 v~k~~s-t~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~s-LF~d 238 (673)
T KOG1461|consen 164 VFKESS-TRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLS-LFTD 238 (673)
T ss_pred EEeccc-cccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHH-Hhhh
Confidence 777664 222 3344566664 5788888751111 112233334443332 2334678999999999999997 4444
Q ss_pred hC--CCCCchhhhhHHhhhhcCceEEEEecC--eEeecCCHHHHHHHHHHhhccC--C---CccccCCCCCCCCCC--cc
Q 009817 325 RY--PTSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALTKES--P---AFHFYDPKTPFYTSP--RF 393 (524)
Q Consensus 325 ~~--~~~~d~~~dii~~li~~~~V~~y~~~~--~w~dIgt~~d~~~An~~l~~~~--~---~~~~~~~~~~i~~~~--~i 393 (524)
.| +...||...+|-.-+-..+|+++.... |-..+.++.+|...+++++.+- | ...+.+.+..-+..- .-
T Consensus 239 NFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk 318 (673)
T KOG1461|consen 239 NFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYK 318 (673)
T ss_pred cccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeeccccccc
Confidence 44 345678777777666778999999875 8999999999999999999874 2 222333111111111 11
Q ss_pred CCCeEEc-Ceee-eceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 394 LPPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 394 ~p~~~i~-~~~i-~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
+|.+.+. .|.+ .++.||.|+.|+ ++.|.||+||.+|+||.+++|++|++|.+ |.||+|
T Consensus 319 ~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdn 379 (673)
T KOG1461|consen 319 SPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDN 379 (673)
T ss_pred CccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCC
Confidence 2223332 2444 368999999999 79999999999999999999999999999 999999
Q ss_pred cEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 471 TKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 471 ~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
|.|++|||++++.|+.|+++..+ ..+..| ++||+|-+++.+++|
T Consensus 380 c~I~~aii~d~v~i~~~~~l~~g---------~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 380 CRIDHAIICDDVKIGEGAILKPG---------SVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred ceEeeeEeecCcEeCCCcccCCC---------cEEeee-eEeCCCccccccccc
Confidence 99999999999999999999865 566655 788888888888654
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=298.47 Aligned_cols=232 Identities=26% Similarity=0.420 Sum_probs=195.0
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|++||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+. .+ . .+++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~-~~-~--~~~~--- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK-EY-E--KKLG--- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh-cc-c--ccCC---
Confidence 6899999999999999999999999999999 9999999999999999999999999999988885 22 1 1222
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
++++...+. ...||+++++.++.++.. ..++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus 73 ~~i~~~~~~-------~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (233)
T cd06425 73 IKITFSIET-------EPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED- 140 (233)
T ss_pred eEEEeccCC-------CCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC-
Confidence 444433222 136999999999988851 24689999999999999999999999999999999988764
Q ss_pred CCCcceEEEECC-CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009817 255 RASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (524)
Q Consensus 255 ~a~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~ 333 (524)
++.||++.+|+ +++|..+.|||..+. +.++++|+|+|++++|..+.+ ...+..
T Consensus 141 -~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~----~~~~~~ 194 (233)
T cd06425 141 -PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPL----RPTSIE 194 (233)
T ss_pred -ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhccc----Ccccch
Confidence 46799999998 799999999987542 357899999999999975432 223345
Q ss_pred hhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 334 ~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
.++++.+++++++.+|.++|+|.||||+++|++|++.++
T Consensus 195 ~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 195 KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 688999999999999999999999999999999998764
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=304.09 Aligned_cols=235 Identities=23% Similarity=0.402 Sum_probs=189.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEecc-CchhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~-~~~~l~~hl~~~y~~~~~~~ 170 (524)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++ ..+.+.+|+ +++..|
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l-----~~g~~~ 74 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLL-----GDGSQW 74 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHH-----cCcccc
Confidence 6789999999999999999999999999999999 999999999999999999987664 445555554 455566
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
+. .+.+. .|.. ++||++|+..+.+++. .+++++++||+++ +.++.++++.|.++++++|+++.
T Consensus 75 g~-~i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~ 138 (292)
T PRK15480 75 GL-NLQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAY 138 (292)
T ss_pred Cc-eeEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEE
Confidence 52 23333 3322 3699999999999885 2568889999754 78999999999888888999988
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC-
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~- 328 (524)
++++ ++.||++.+|++|+|+.|.|||..+. ++++++|+|+|+++++.. ++...+.
T Consensus 139 ~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~~ 194 (292)
T PRK15480 139 HVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPSA 194 (292)
T ss_pred EcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCCC
Confidence 8765 56899999999999999999997542 468999999999998864 4443332
Q ss_pred -CCchhhhhHHhhhhcCceEE-EEecC-eEeecCCHHHHHHHHHHhh
Q 009817 329 -SNDFGSEIIPAAIMEHDVQA-YIFRD-YWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 329 -~~d~~~dii~~li~~~~V~~-y~~~~-~w~dIgt~~d~~~An~~l~ 372 (524)
.+-..+++++.+++++++.. +...+ +|.|+||+++|.+|+..+.
T Consensus 195 ~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 195 RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 22235789999998876643 56678 4999999999999998775
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=291.92 Aligned_cols=231 Identities=23% Similarity=0.389 Sum_probs=188.0
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccC-chhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~-~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++. .+++.+|+. ++..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~-----~~~~~~-- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLG-----DGSDLG-- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHh-----cccccC--
Confidence 6899999999999999999999999999999 9999999999999999999998765 466766664 333444
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+++....+.. ..||+++++.++.+++ .++|++++||+++ +.++.++++.|.++++++++++.+.+
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
T cd02538 73 -IRITYAVQPK-------PGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN 138 (240)
T ss_pred -ceEEEeeCCC-------CCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3343333321 2699999999998875 3789999999865 66799999999988889999888876
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CC
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~ 330 (524)
+ ++.||++.+|++|+|..|.|||..+. +.++++|+|+|++++|. +++...+. ..
T Consensus 139 ~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~ 194 (240)
T cd02538 139 D--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGE 194 (240)
T ss_pred c--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCe
Confidence 5 46799999999999999999987542 35789999999999885 55543322 22
Q ss_pred chhhhhHHhhhhcCceEEEEec--CeEeecCCHHHHHHHHHHh
Q 009817 331 DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 331 d~~~dii~~li~~~~V~~y~~~--~~w~dIgt~~d~~~An~~l 371 (524)
.+..++++.+++++++.++.++ ++|.||||+++|++||+.+
T Consensus 195 ~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 195 LEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred EEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 3446899999998888888876 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=295.40 Aligned_cols=241 Identities=22% Similarity=0.301 Sum_probs=190.5
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hc-----CCc
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~-----~~~ 168 (524)
|++||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+ +. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999985332 11 000
Q ss_pred c----------cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc---CHHHHHH
Q 009817 169 N----------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQ 235 (524)
Q Consensus 169 ~----------~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~ 235 (524)
. .+ ..+.+.. | ++.+||+++++.++.+++ .++|+|++||+++.. ++.++++
T Consensus 80 ~~~~~~~~~~~~~-~~i~~~~--~-------~~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~ 143 (267)
T cd02541 80 TDLLEEVRIISDL-ANIHYVR--Q-------KEPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIE 143 (267)
T ss_pred HHHhhhhhcccCC-ceEEEEE--c-------CCCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHH
Confidence 0 01 1122222 2 124699999999998885 278999999998864 4999999
Q ss_pred HHHHcCCcEEEEEEEcCCCCCCcceEEEECC----CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEE
Q 009817 236 SHVDRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (524)
Q Consensus 236 ~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~----~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIY 311 (524)
.|++.+++ ++++.+...+++..||++.+|+ .++|..|.|||..... .+.++++|+|
T Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giy 203 (267)
T cd02541 144 AYEKTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRY 203 (267)
T ss_pred HHHHhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEE
Confidence 99887776 4555565544567899999986 2589999999864221 2367899999
Q ss_pred EEeHHHHHHHHHhhCC-CCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 312 VFKKDVLFKLLRWRYP-TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 312 vf~~~vL~~ll~~~~~-~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
+|++++|..+.+.... ....+..++++.+++++++++|.++|+|.||||+++|++||+++.
T Consensus 204 i~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 204 VLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred EcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9999998765432111 233456789999999889999999999999999999999999875
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=297.85 Aligned_cols=231 Identities=26% Similarity=0.456 Sum_probs=187.7
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~-~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++ +..+.+.+|+ +++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~l-----g~g~~~g--- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLL-----GDGSQWG--- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHh-----ccccccC---
Confidence 589999999999999999999999999999 99999999999999999998886 4445555444 4555665
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
+++....|.. ++||++|++.++.++. .+++++++||++ ++.++.++++.|.+.++++++++.++++
T Consensus 72 ~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~ 138 (286)
T TIGR01207 72 VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD 138 (286)
T ss_pred ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC
Confidence 3444444432 3699999999999985 368889999975 5789999999999888899999988875
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCc
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 331 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d 331 (524)
+++||++.+|++|+|..|.|||..+. ++++++|+|+|+++++. +++...+. .+.
T Consensus 139 --p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 194 (286)
T TIGR01207 139 --PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGEL 194 (286)
T ss_pred --HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcE
Confidence 46899999999999999999997442 46899999999999875 45543332 223
Q ss_pred hhhhhHHhhhhcCceEEEEe-cCe-EeecCCHHHHHHHHHHhh
Q 009817 332 FGSEIIPAAIMEHDVQAYIF-RDY-WEDIGTIKSFYEANMALT 372 (524)
Q Consensus 332 ~~~dii~~li~~~~V~~y~~-~~~-w~dIgt~~d~~~An~~l~ 372 (524)
+..++++.+++++++..+.+ .|+ |.|+||+++|++||..+.
T Consensus 195 eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 195 EITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred eHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 45699999999877666666 576 999999999999998774
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=289.87 Aligned_cols=233 Identities=18% Similarity=0.295 Sum_probs=189.8
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCcccC--C
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFG--D 172 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~~--~ 172 (524)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.... .+.+.++. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999885311 11111110 0
Q ss_pred C------------eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHc
Q 009817 173 G------------FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (524)
Q Consensus 173 ~------------~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~ 240 (524)
+ .+++.. +. .++||++++++++.++. .++|++++||++++.++.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~-------~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--TG-------ESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--cC-------CcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 011111 11 13699999999998874 378999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHH
Q 009817 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (524)
Q Consensus 241 ~ad~tl~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ 320 (524)
++++|+++.+ + +..||.+.+|+ ++|..|.|||... +.++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999887652 2 46799999985 6999999998632 25789999999999984
Q ss_pred HHHhhCCCCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccC
Q 009817 321 LLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 321 ll~~~~~~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
++++ ...++..++++.+++++++.+|.++|+|.||||+++|.+|+..+....
T Consensus 197 ~l~~---~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDG---DATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hccc---cCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 5543 233667799999999999999999999999999999999999887765
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=292.93 Aligned_cols=239 Identities=21% Similarity=0.288 Sum_probs=186.6
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hc-----CCc
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~-----~~~ 168 (524)
|++||||||.||||+|||..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...| ++ .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999986332 11 000
Q ss_pred ccC-------CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc---CHHHHHHHHH
Q 009817 169 NFG-------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (524)
Q Consensus 169 ~~~-------~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~~h~ 238 (524)
.+. ...+.+....+ .+.+||++++++++.++. .++|+|++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00112211112 234699999999998874 378999999998864 6999999999
Q ss_pred HcCCcEEEEEEEcCCCCCCcceEEEECC----CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEe
Q 009817 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (524)
Q Consensus 239 ~~~ad~tl~~~~~~~~~a~~~g~v~id~----~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~ 314 (524)
++++++ +++...+.+++++||++.+|+ +++|..|.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888876 555565544567899999872 3799999999953211 2357899999999
Q ss_pred HHHHHHHHHhhCCC-CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHH
Q 009817 315 KDVLFKLLRWRYPT-SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (524)
Q Consensus 315 ~~vL~~ll~~~~~~-~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~A 367 (524)
+++|..+.+..... ...+..++++.+++++++++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 99887664432221 234456899999999999999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=291.64 Aligned_cols=244 Identities=23% Similarity=0.310 Sum_probs=193.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCC---
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG--- 167 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~--- 167 (524)
.+-|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|++++..+++.+|+...+ ++..
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~ 84 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhh
Confidence 3458999999999999999999999999999999 9999999999999999999999999999998885322 2100
Q ss_pred ---cccCC-------CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--------cC
Q 009817 168 ---TNFGD-------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MD 229 (524)
Q Consensus 168 ---~~~~~-------~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--------~d 229 (524)
..+.. ....+....|. ...||++|+++++.++. .++|+|++||++++ .+
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~d 151 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDN 151 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceeccccccccccc
Confidence 00000 00122222222 23699999999988874 37899999999874 78
Q ss_pred HHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECC-------CCcEEEEEecCCcccccccccccccccCCccccccC
Q 009817 230 YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302 (524)
Q Consensus 230 l~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~-------~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~ 302 (524)
+.++++.|.+.+++ ++++.++++ +..||++.+|+ +++|..|.|||..... .
T Consensus 152 l~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~ 209 (302)
T PRK13389 152 LAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------P 209 (302)
T ss_pred HHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------C
Confidence 99999999888876 677777744 56899998863 3579999999974321 1
Q ss_pred CcceeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 303 PYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 303 ~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
+.++++|+|+|++++|. +++...+. .+.+..++++.++++.++.+|.++|+|.|||||++|.+|+.++.
T Consensus 210 s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 210 SNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred ccEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 36799999999999984 66654322 33567899999999999999999999999999999999999875
|
|
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=279.06 Aligned_cols=219 Identities=21% Similarity=0.302 Sum_probs=181.7
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeE
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V 175 (524)
+|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.. ..|+ +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~------~~~~---~ 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD------SRFG---L 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc------ccCC---c
Confidence 589999999999999999999999999999 99999999999999999999999999999888853 1233 3
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHH--cCCcEEEEEEEcCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD--RDADITISCAAVGE 253 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~--~~ad~tl~~~~~~~ 253 (524)
.+....+. .+..||+++++.++.++. .++|++++||++++.++.++++.|.+ .++++++...+.+.
T Consensus 71 ~i~~~~~~------~~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (221)
T cd06422 71 RITISDEP------DELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG 138 (221)
T ss_pred eEEEecCC------CcccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC
Confidence 33332222 023699999999998875 27899999999999999999999984 55666666555443
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~ 333 (524)
.+.||.+.+|++|+|..+.|||.. +++++|+|+|++++|..+.+. ....
T Consensus 139 --~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~ 187 (221)
T cd06422 139 --HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSL 187 (221)
T ss_pred --CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccH
Confidence 567999999999999999988752 468999999999998865432 2345
Q ss_pred hhhHHhhhhcCceEEEEecCeEeecCCHHHHHHH
Q 009817 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (524)
Q Consensus 334 ~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~A 367 (524)
.++++.+++++++.+|.++++|.||||+++|.+|
T Consensus 188 ~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 188 NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 6899999999999999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=279.72 Aligned_cols=242 Identities=17% Similarity=0.265 Sum_probs=190.4
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCccc--CCC
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF--GDG 173 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~--~~~ 173 (524)
|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ ++....+ ..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 68999999999999999999999999999 9999999999999999999999999999999986432 1111111 111
Q ss_pred eEEEEccccCC-C--CCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 174 FVEVLAATQTP-G--ESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 174 ~V~vl~~~q~~-~--e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
.+.++...... . .....-..||++++++++.++. ..++|++++||++++.++.++++.|...++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 12222210000 0 0000012589999999998874 12789999999999999999999999999999887653
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
..+.||.+.+|++|+|..+.|||... +.++++|+|+|++++|..+ +.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---cc
Confidence 24679999999999999999998643 1468999999999998644 332 44
Q ss_pred chhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhcc
Q 009817 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 331 d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~ 374 (524)
++..++++.+++++++.+|.++|+|.||+|+++|..|+..+.+.
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 66679999999999999999999999999999999999887654
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=275.33 Aligned_cols=232 Identities=27% Similarity=0.414 Sum_probs=190.6
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+ +..|+. .
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-----~~~~~~-~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGD-----GSRFGV-R 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcc-----hhhcCC-e
Confidence 7899999999999999999999999999999 99999999999999999999999988888877742 122331 2
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
+.++. +. +..||+++++.++.++. .++|++++||++++.++.++++.|.+.++++++++.+.++
T Consensus 74 i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (236)
T cd04189 74 ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED- 137 (236)
T ss_pred EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC-
Confidence 33332 21 23599999999998874 3789999999999999999999999989999998888765
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~ 332 (524)
+..||++.+|+ ++|..+.|||..+. +.++++|+|+|++++|..+ +...+. ...+
T Consensus 138 -~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~ 193 (236)
T cd04189 138 -PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELE 193 (236)
T ss_pred -cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEE
Confidence 45789888875 59999999986432 3578999999999988754 332222 2344
Q ss_pred hhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 333 ~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
..++++.++++ .+|.+|.++++|.||||++||.+||+.+++
T Consensus 194 ~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 194 ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 56889998876 579999999999999999999999998875
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=267.06 Aligned_cols=223 Identities=25% Similarity=0.423 Sum_probs=184.9
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .++. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-----~~~~-~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-----RGGI-RIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-----ccCc-eEE
Confidence 69999999999999999999999999999 9999999999999999999999999888887875322 1221 122
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
+... +. ..|++++++.++..+. .++|++++||+++..++.++++.|++.+.++++++.+..+ .
T Consensus 74 ~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 136 (223)
T cd06915 74 YVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--A 136 (223)
T ss_pred EEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--C
Confidence 2221 11 2599999999988773 3789999999999999999999998888888888887654 3
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~~di 336 (524)
..|+.+.+|++|+|..|.|||.... ++++++|+|+|++++|..+.+. ..++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~ 191 (223)
T cd06915 137 SRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADV 191 (223)
T ss_pred CcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHH
Confidence 5799999998899999999977431 3688999999999998754222 33456789
Q ss_pred HHhhhhcCceEEEEecCeEeecCCHHHHHHHH
Q 009817 337 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 337 i~~li~~~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
++.+++++++.+|.++++|.||||++||..|+
T Consensus 192 ~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 99999888999999999999999999999883
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=264.40 Aligned_cols=217 Identities=30% Similarity=0.524 Sum_probs=181.9
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+ .++ ..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~-~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-----KFG-VNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-----hcC-ceEE
Confidence 69999999999999999999999999999 9999999999999999999999998888888774221 122 1233
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++.... ..|++++++.++..+. .++|++++||++++.++.++++.|.++++++++++.+.+ ++
T Consensus 74 ~~~~~~---------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 136 (217)
T cd04181 74 YVVQEE---------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DP 136 (217)
T ss_pred EEeCCC---------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CC
Confidence 332211 2599999999988773 489999999999999999999999999999999988776 35
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~~di 336 (524)
.+|+.+.+|++|+|..+.|||.... ..++++|+|+|++++|. +++.......++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 194 (217)
T cd04181 137 SRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDA 194 (217)
T ss_pred CcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHH
Confidence 6899999999899999999987542 25789999999999885 5554333345677899
Q ss_pred HHhhhhcCceEEEEecCeEeecC
Q 009817 337 IPAAIMEHDVQAYIFRDYWEDIG 359 (524)
Q Consensus 337 i~~li~~~~V~~y~~~~~w~dIg 359 (524)
++.++++.++++|.++|+|.|||
T Consensus 195 ~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 195 IPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHhcCCEEEEEcCCEEecCC
Confidence 99999999999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=260.23 Aligned_cols=219 Identities=25% Similarity=0.463 Sum_probs=177.4
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
+||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+. ++..++. .+.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~~~~~~~-~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFG-----DGSKFGV-NIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHC-----CccccCc-cEE
Confidence 68999999999999999999999999999 9999999999999999999999998888877764 2223331 133
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++. +. ...||+++++.+.... .++|+|++||++++.++.++++.|++.++++++++.+... .
T Consensus 74 ~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 135 (220)
T cd06426 74 YVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--Q 135 (220)
T ss_pred EEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 332 21 1259999997665433 4899999999999999999999999988899988877543 3
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~~di 336 (524)
..||++..|+ ++|..|.|||... .++++|+|+|+++++..+ +. .......++
T Consensus 136 ~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~ 187 (220)
T cd06426 136 VPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPDL 187 (220)
T ss_pred CcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHHH
Confidence 5699999986 8999999997632 467999999999998754 21 222235688
Q ss_pred HHhhhhc-CceEEEEecCeEeecCCHHHHHHHH
Q 009817 337 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 337 i~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
++.++++ .++.+|.++++|.||||+++|.+||
T Consensus 188 ~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 188 IEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 8888877 5799999999999999999999986
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=263.36 Aligned_cols=249 Identities=21% Similarity=0.288 Sum_probs=205.9
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCc--
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGT-- 168 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~-- 168 (524)
|+..+|||+|||.||||.|.|+..||-|+||.+| |+|+|+++.+..+||++|++||+.+...+.+|+...| +++..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4567999999999999999999999999999999 9999999999999999999999999999999986555 32210
Q ss_pred --cc------C--CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc---CHHHHHH
Q 009817 169 --NF------G--DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQ 235 (524)
Q Consensus 169 --~~------~--~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~---dl~~ll~ 235 (524)
+. . ...+++.+..|.. ++|.+|||++|..++. +|+|.|+.+|.++.. .+.+|++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHHH
Confidence 00 0 1234555555543 4799999999999986 489999999999875 3899999
Q ss_pred HHHHcCCcEEEEEEEcCCCCCCcceEEE----ECCC-CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeE
Q 009817 236 SHVDRDADITISCAAVGESRASDYGLVK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (524)
Q Consensus 236 ~h~~~~ad~tl~~~~~~~~~a~~~g~v~----id~~-g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GI 310 (524)
.+.+.+.. ++.+.+++.++.+.||++. .+++ .+|..+.|||+..++ .|+++..|-
T Consensus 148 ~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GR 207 (291)
T COG1210 148 LYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGR 207 (291)
T ss_pred HHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeee
Confidence 99988873 6777788777788999998 4443 689999999976543 479999999
Q ss_pred EEEeHHHHHHHHHhhCCCC--CchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccC
Q 009817 311 YVFKKDVLFKLLRWRYPTS--NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 311 Yvf~~~vL~~ll~~~~~~~--~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
|+|++++|+ +|++..+.. +--.+|.|..+++++.+.+|.|+|..+|+|++..|.+|+.++..+.
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 999999998 567655542 2245688889999999999999999999999999999999998764
|
|
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=247.68 Aligned_cols=222 Identities=18% Similarity=0.247 Sum_probs=169.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
.||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++.. ....|+.+.+.... . .+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~~---~--~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLLA---P--NAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHhC---C--CCE
Confidence 48999999999999999999999999999 99999999999999999999997532 22233332221111 1 123
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++..... ..||++++++++..+. ..++|++++||++++.++.++++.|.+.+.+.++++.+.+ .
T Consensus 74 i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 137 (231)
T cd04183 74 VVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---H 137 (231)
T ss_pred EEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---C
Confidence 3221111 2599999999998874 2378999999999999999999999887777777776652 3
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHH-HHHHHHHhhC-----CCCC
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY-----PTSN 330 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~-vL~~ll~~~~-----~~~~ 330 (524)
.+|+.+.+|++|+|..+.||+.. +.++++|+|+|+++ +|..+++... +...
T Consensus 138 ~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (231)
T cd04183 138 PRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGE 194 (231)
T ss_pred CCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCc
Confidence 57999999999999999988532 24679999999998 6655555421 1223
Q ss_pred chhhhhHHhhhhc-CceEEEEe-cCeEeecCCHHHH
Q 009817 331 DFGSEIIPAAIME-HDVQAYIF-RDYWEDIGTIKSF 364 (524)
Q Consensus 331 d~~~dii~~li~~-~~V~~y~~-~~~w~dIgt~~d~ 364 (524)
.+..++++.++++ .+|++|.+ +++|.||||+++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 3457899999977 47999999 6999999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=247.99 Aligned_cols=222 Identities=17% Similarity=0.244 Sum_probs=173.0
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.. + .+ +.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~-~------~~---~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK-Y------PN---IK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc-c------CC---eE
Confidence 69999999999999999999999999999 99999999999999999999999998888888741 1 12 55
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a 256 (524)
++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++++++.+..+...
T Consensus 70 ~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (229)
T cd02523 70 FVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWE 132 (229)
T ss_pred EEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCccccc
Confidence 55433211 2599999999988773 79999999999865 5677788888899988877444334
Q ss_pred CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh---hCC--CCCc
Q 009817 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSND 331 (524)
Q Consensus 257 ~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~---~~~--~~~d 331 (524)
..++....|+ +++..+.+||..+. ...+.++|+|+|++++|..+.+. ..+ ...+
T Consensus 133 ~~~~~~~~~~-~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~ 191 (229)
T cd02523 133 DEYVKDLDDA-GVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNL 191 (229)
T ss_pred ccceeeecCc-cceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccc
Confidence 4566554443 78999999986542 13578999999999997765432 111 2456
Q ss_pred hhhhhHHhhhhc--CceEEEEecCeEeecCCHHHHHHHH
Q 009817 332 FGSEIIPAAIME--HDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 332 ~~~dii~~li~~--~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
+..++++.++++ .+++.|.. ++|.||||++||.+|+
T Consensus 192 ~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 192 YYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred cHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 678999999884 45555555 8999999999999874
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=249.05 Aligned_cols=204 Identities=17% Similarity=0.287 Sum_probs=157.3
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~~~~ 173 (524)
++|||||||.|+||+|||..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+ ++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 4799999999999999999999999999999 9999999999999999999999999999999986433 221 11011
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHH-----cCCcEEE
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 246 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~-----~~ad~tl 246 (524)
.+++....+ ..||+++++... ..+ .++|++++||++++.++.++++.|++ +++++|+
T Consensus 78 ~i~~~~~~~---------~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIMSED---------CRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEeCCC---------cCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 244443221 258999987543 222 37899999999999999999999998 4788999
Q ss_pred EEEEcCCCC----CCcceEEEECCC-CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH
Q 009817 247 SCAAVGESR----ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (524)
Q Consensus 247 ~~~~~~~~~----a~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL 318 (524)
++.++++++ ..+++++.+|++ ++|..|.|||..+......+...++.-.+.. ..++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 888876644 224678888866 8999999999876543333444444444332 3468999999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=241.56 Aligned_cols=198 Identities=47% Similarity=0.782 Sum_probs=160.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCcccCCCeE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFV 175 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~~~~~V 175 (524)
|||||||.||||+|+|+.+||||+||+|+||||+|+++++.++|+++|+|++++..+++.+|+...+ ++. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 5899999999999999999999999999879999999999999999999999999999988875221 111 1111235
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR 255 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~ 255 (524)
.++...+.. .+.|.+||+++++.++.++++ ...++|++++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 565543311 124568999999999998852 12478999999999999999999999998888887764
Q ss_pred CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC-CCCchhh
Q 009817 256 ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSNDFGS 334 (524)
Q Consensus 256 a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~-~~~d~~~ 334 (524)
+++|+|+|++++|..+++...+ ...++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 1789999999999777765332 3457788
Q ss_pred hhHHhhhhcCceEEEEecCeEeec
Q 009817 335 EIIPAAIMEHDVQAYIFRDYWEDI 358 (524)
Q Consensus 335 dii~~li~~~~V~~y~~~~~w~dI 358 (524)
|+++.++++.++.+|.++|+|.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=238.54 Aligned_cols=235 Identities=17% Similarity=0.285 Sum_probs=169.0
Q ss_pred eeEEEEeCCCCCcccCCcc-CCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHHhhhcCCcccC
Q 009817 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~-~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~-l~~hl~~~y~~~~~~~~ 171 (524)
|++||||||.||||+|||. .+||+|+|++|.+|||+++++++.+. ++++|+|+|++...+ +.+++. . .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~-----~---~- 71 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLP-----E---G- 71 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHh-----h---c-
Confidence 6899999999999999996 79999999999339999999999998 599999999976544 333332 1 0
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHH---cCCcEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADITI 246 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~---~~ad~tl 246 (524)
...+.++.+.. .+||++++..++.++.. ..+.+.++|++|||++. .+|.++++.|.+ .++.+|+
T Consensus 72 ~~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~ 140 (274)
T cd02509 72 LPEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTF 140 (274)
T ss_pred CCCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 01245554322 25999999999888752 12357899999999886 567777766553 5667777
Q ss_pred EEEEcCCCCCCcceEEEECCCC-----cEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHH
Q 009817 247 SCAAVGESRASDYGLVKIDNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (524)
Q Consensus 247 ~~~~~~~~~a~~~g~v~id~~g-----~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~l 321 (524)
.+.+... .+.||+++.+++. +|..|.|||....++.+. ....+++++|+|+|+++.|...
T Consensus 141 gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~-------------~~g~~~wNsGiyi~~~~~l~~~ 205 (274)
T cd02509 141 GIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYL-------------ESGNYLWNSGIFLFRAKTFLEE 205 (274)
T ss_pred EeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHh-------------hcCCeEEECceeeeeHHHHHHH
Confidence 7777543 3689999998763 899999999865432211 0124689999999999988887
Q ss_pred HHhhCCCC-------------C---chhhhhHHh---------hhhc-CceEEEEecCeEeecCCHHHH
Q 009817 322 LRWRYPTS-------------N---DFGSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSF 364 (524)
Q Consensus 322 l~~~~~~~-------------~---d~~~dii~~---------li~~-~~V~~y~~~~~w~dIgt~~d~ 364 (524)
++...|.. . .+..+.++. ++++ .++.+++.+..|-|+|+++++
T Consensus 206 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~~ 274 (274)
T cd02509 206 LKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDAL 274 (274)
T ss_pred HHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCcccC
Confidence 77654421 0 111233332 1222 678888888899999998763
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-26 Score=220.20 Aligned_cols=221 Identities=22% Similarity=0.332 Sum_probs=172.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
|||||||.|+||++ .+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+++.+ ++ ++
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~---~~ 65 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PN---VE 65 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CC---cE
Confidence 69999999999986 589999999999 99999999999999999999999987777666531 22 44
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-c-ccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
++.... ..|+++++++++..+++ ..+.|+++.||+. + ..++.++++.|.+.++++++.+.+..+
T Consensus 66 ~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~- 131 (229)
T cd02540 66 FVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED- 131 (229)
T ss_pred EEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC-
Confidence 443221 25999999999988851 2478999999993 3 567899999998877888888777654
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---CCCc
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~---~~~d 331 (524)
+..|+.+..|++|+|..+.|||...... ...+.+++|+|+|+++.|..+++.... ....
T Consensus 132 -p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~ 193 (229)
T cd02540 132 -PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEY 193 (229)
T ss_pred -CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcE
Confidence 4679988888889999999987532100 012578999999999987777765432 2345
Q ss_pred hhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHH
Q 009817 332 FGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSF 364 (524)
Q Consensus 332 ~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~ 364 (524)
+..++++.++++ .+|++|.++|| |+.|+|+.++
T Consensus 194 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 194 YLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 678999999976 57999999876 7778888764
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=222.82 Aligned_cols=204 Identities=19% Similarity=0.311 Sum_probs=158.6
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
++|||||||.|+||+|+|...||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.++.. ...+ ..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~-~~~~-~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSS-LSSK-MI 77 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccccc-ccCC-ce
Confidence 5899999999999999999999999999999 9999999999999999999999999999998887544210 0111 12
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHH--HHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~--h~~~~ad~tl~~~~~~ 252 (524)
+.+....+. ...||+++++++++++. ++|++++||++++.++.+++++ +...++++++++....
T Consensus 78 v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~ 143 (216)
T cd02507 78 VDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLAS 143 (216)
T ss_pred EEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEecc
Confidence 444433332 23699999999988774 7899999999999999999976 5556777777766544
Q ss_pred CCC-------CCcceEEEECCC---CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH
Q 009817 253 ESR-------ASDYGLVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (524)
Q Consensus 253 ~~~-------a~~~g~v~id~~---g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL 318 (524)
... +.+++++.+|++ .++..+.|+|.... .+.+...++.-.|.. ..++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~~-~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 144 PPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPNV-TIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCCE-EEEcCcccccEEEecCcCC
Confidence 322 467899999988 58888888887543 233455556655543 4578999999999999864
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=231.58 Aligned_cols=240 Identities=17% Similarity=0.295 Sum_probs=165.8
Q ss_pred eeEEEEeCCCCCcccCCccC-CCccceeecC-cchhHHHHHHHHHhcCCCeEEEEeccCchh-HHHHHHHhhhcCCcccC
Q 009817 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PKpLlpIgG-k~pLId~~l~~l~~sGi~~I~Ivt~~~~~~-l~~hl~~~y~~~~~~~~ 171 (524)
|.+||||||.||||+|||.. +||+|+|+.| + |||+++++.+...++++++|+++..... +.+.+ +. ++
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l-~~-------~~ 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQL-RE-------IG 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHH-HH-------cC
Confidence 57999999999999999996 8999999977 7 9999999999999999999999864432 22222 12 11
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc--CHHHHHHHH---HHcCCcEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFIQSH---VDRDADITI 246 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~--dl~~ll~~h---~~~~ad~tl 246 (524)
.....++.+.. .+|||+++..+..++.... ...+.++|++||+++.. +|.++++++ .+.++.+|+
T Consensus 72 ~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtl 141 (468)
T TIGR01479 72 KLASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTF 141 (468)
T ss_pred CCcceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11123443322 2599999998776663200 12345999999988753 488888765 344555555
Q ss_pred EEEEcCCCCCCcceEEEECC------CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHH
Q 009817 247 SCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (524)
Q Consensus 247 ~~~~~~~~~a~~~g~v~id~------~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ 320 (524)
...+..+ .+.||++..|+ .++|..|.|||....++.+. ....+++++|||+|+++.|..
T Consensus 142 gi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l-------------~~g~~~wNsGif~~~~~~ll~ 206 (468)
T TIGR01479 142 GIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYL-------------ESGDYYWNSGMFLFRASRYLA 206 (468)
T ss_pred EecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHH-------------hcCCeEEEeeEEEEEHHHHHH
Confidence 5554433 36899999984 26899999999865432111 012478999999999887777
Q ss_pred HHHhhCCCC-----------------CchhhhhHH---------hhhhc-CceEEEEecCeEeecCCHHHHHHHH
Q 009817 321 LLRWRYPTS-----------------NDFGSEIIP---------AAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 321 ll~~~~~~~-----------------~d~~~dii~---------~li~~-~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
.++...|.. ..+..++++ .++++ .++.+...+..|.|+|++++|.+.-
T Consensus 207 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 207 ELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 666543310 111134455 22333 5789999999999999999999863
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=209.69 Aligned_cols=201 Identities=21% Similarity=0.311 Sum_probs=147.8
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCc-hhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~~~~ 173 (524)
|+|||||||.|+||+|+|...||+|+||+|+ |||+|+++++.++|+++|+|++++.. +.+..++.+..+.. .. ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~--~~-~~ 76 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNL--KQ-KL 76 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhccccc--Cc-ce
Confidence 5899999999999999999999999999999 99999999999999999999999765 34555553211111 00 11
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.+.+.... ...||+++++.++..+. ++|++++||++++.++.++++.|++.++.+|+++.+...
T Consensus 77 ~~~~~~~~---------~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~ 140 (214)
T cd04198 77 DEVTIVLD---------EDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPV 140 (214)
T ss_pred eEEEecCC---------CCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCC
Confidence 12222211 13699999999987763 789999999999999999999999999999998887542
Q ss_pred C----------C-CCcceEEEECCC-CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH
Q 009817 254 S----------R-ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (524)
Q Consensus 254 ~----------~-a~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL 318 (524)
. + ...+.++.+|++ +++..+....... +...++..++.-.|+. ..++++.++++|+|++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~~-~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 141 SSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPRV-TITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCCE-EEEcCcccceEEEEEeeeC
Confidence 1 1 235677777764 6777766532221 2233345555555533 4478899999999998764
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=201.27 Aligned_cols=234 Identities=17% Similarity=0.198 Sum_probs=159.7
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.+.+||||+|.|+||. +|+|+|++|+ |||+|+++.+.++|+++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVE-A-------FG-- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHH-H-------cC--
Confidence 3679999999999993 6999999999 999999999999999999998864 55555553 1 22
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.++...+. ++.||++... +...+. ....+.+++++||+ +.+ ..+.++++.|..+++++++++.+.
T Consensus 63 -~~v~~~~~~-------~~~gt~~~~~-~~~~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 63 -GEVVMTSPD-------HPSGTDRIAE-AAAKLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred -CEEEECCCc-------CCCchHHHHH-HHHhcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 233332221 2347766443 333331 01246799999999 554 568999998887767777776665
Q ss_pred CC----CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC
Q 009817 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (524)
Q Consensus 252 ~~----~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~ 327 (524)
.+ ..++.++++ +|++|+|+.|.|||..+.... .++. ...+++.++|+|+|++++|..+.+. .+
T Consensus 131 ~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~ 197 (245)
T PRK05450 131 HDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PP 197 (245)
T ss_pred CCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CC
Confidence 22 234557765 899999999999995332100 0000 0125889999999999999876653 22
Q ss_pred CCCchh--hhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHh
Q 009817 328 TSNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 328 ~~~d~~--~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l 371 (524)
...+.. .++++.+-++.+|+++.+++ +|.|||||+||..|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 198 SPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 211111 11223233446899999996 999999999999999765
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=197.19 Aligned_cols=226 Identities=17% Similarity=0.267 Sum_probs=156.9
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+.+||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVE-S-------FG-- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHH-H-------cC--
Confidence 579999999999994 6999999999 9999999999998 99999999864 45555543 1 22
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHc-CCcEEEEEEE
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~-~ad~tl~~~~ 250 (524)
+.++...+. +..||++ +..++..+. ...+.||+++||+ ++ ..++..+++.|.+. +.++++++.+
T Consensus 63 -~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 63 -GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred -CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 334332221 1358875 555555443 1136799999997 44 45789999988776 6788888877
Q ss_pred cCCCC----CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 251 VGESR----ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 251 ~~~~~----a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
.+++. ...|+ +.+|++|+|..|.+||...... |.. ....++++|+|+|++++|..+.+..
T Consensus 130 ~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~~- 193 (239)
T cd02517 130 ISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAALP- 193 (239)
T ss_pred cCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhCC-
Confidence 65421 23344 5577789999999876422100 000 0136889999999999998765431
Q ss_pred CCCCchhhhhHH--hhhhc-CceEEEEecCeEeecCCHHHHHHHHH
Q 009817 327 PTSNDFGSEIIP--AAIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (524)
Q Consensus 327 ~~~~d~~~dii~--~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~ 369 (524)
....+ ..+.++ .++++ .+++++..+++|.||||++||..|++
T Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 123333 34554 56999999999999999999999974
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=191.48 Aligned_cols=224 Identities=16% Similarity=0.241 Sum_probs=150.2
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEe-ccCchhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt-~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
|..|+|||||||.|+||+| ..||+|+.++|+ +||+|+|++|.+.|++++++|+ +|..+.+.+++. .| .|
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~-----~~ 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KY-----PF 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cC-----Cc
Confidence 5678999999999999999 799999999999 9999999999999999999999 888877766664 22 22
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..+++...... ..+|+.++..+++.+. +.|++++|||+|...+ ++...+..+. ++.+..
T Consensus 71 ---~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~---~e~l~~a~~~-~li~d~ 129 (239)
T COG1213 71 ---NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSI---LERLLEAPGE-GLIVDR 129 (239)
T ss_pred ---ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHH---HHHHHhCcCC-cEEEec
Confidence 14444333221 1367999999998886 6799999999998664 3333333332 233322
Q ss_pred cCCCCC-CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 251 VGESRA-SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 251 ~~~~~a-~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
.+.... .+-..++ +++|++..+..+-+.. +..++|++.|+.+++..+.+-.....
T Consensus 130 ~~~~~~~~ea~kv~-~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~~~~e~~ 185 (239)
T COG1213 130 RPRYVGVEEATKVK-DEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYELLVERS 185 (239)
T ss_pred cccccccCceeEEE-ecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHHHHhhhh
Confidence 211001 1222334 4689999887655522 45799999999998766544332211
Q ss_pred CchhhhhHHhhhhcCceEEEEe-----cCeEeecCCHHHHHHHHHHhhcc
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIF-----RDYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~-----~~~w~dIgt~~d~~~An~~l~~~ 374 (524)
.. .+....+...+.+-.. ...|.||+||+|+.+|...+...
T Consensus 186 ~~----~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 186 EY----DYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred hH----HHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 11 1222222222222222 24699999999999999887643
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=186.21 Aligned_cols=225 Identities=17% Similarity=0.296 Sum_probs=152.5
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
.+.+||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~-~-------~~- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE-A-------FG- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH-H-------cC-
Confidence 3679999999999993 5999999999 9999999999998 89999999864 55655553 2 22
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCC-cEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCA 249 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~a-d~tl~~~ 249 (524)
++++...+. +..|+++ +..+...+ ..+.|+++.||. +...++.++++.|.+.+. ++++++.
T Consensus 64 --~~v~~~~~~-------~~~g~~~-~~~a~~~~------~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (238)
T PRK13368 64 --GKVVMTSDD-------HLSGTDR-LAEVMLKI------EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCA 127 (238)
T ss_pred --CeEEecCcc-------CCCccHH-HHHHHHhC------CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEE
Confidence 223222111 1247764 55554443 247899999997 446679999998876543 5555665
Q ss_pred EcCC-CC---CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhh
Q 009817 250 AVGE-SR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (524)
Q Consensus 250 ~~~~-~~---a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~ 325 (524)
+++. .+ +..+++ .++++|++..|.|+|...... . ....++.++|+|+|++++|..+ +..
T Consensus 128 ~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~--------------~-~~~~~~~n~giy~~~~~~l~~~-~~~ 190 (238)
T PRK13368 128 PISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRD--------------G-ESARYLKHVGIYAFRRDVLQQF-SQL 190 (238)
T ss_pred EcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCC--------------C-CCCceeEEEEEEEeCHHHHHHH-HcC
Confidence 5543 11 334444 456679999999765321100 0 0013578999999999999864 321
Q ss_pred CCCC-Cchhh-hhHHhhh-hcCceEEEEecCeEeecCCHHHHHHHHHH
Q 009817 326 YPTS-NDFGS-EIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (524)
Q Consensus 326 ~~~~-~d~~~-dii~~li-~~~~V~~y~~~~~w~dIgt~~d~~~An~~ 370 (524)
.... .++.. +++ .++ ...++++|..+++|.||||++||..|+..
T Consensus 191 ~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 191 PETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1111 11222 455 454 44679999999999999999999999864
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=201.21 Aligned_cols=241 Identities=17% Similarity=0.275 Sum_probs=160.0
Q ss_pred eeEEEEeCCCCCcccCCccC-CCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHH-HHHHHhhhcCCcccCC
Q 009817 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN-RHIARTYFGNGTNFGD 172 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~-~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~-~hl~~~y~~~~~~~~~ 172 (524)
|.+||||||.||||||+|.. +||||+|++|..|||+++++.+...++.+.+|+|+.....+. +.+. . +..
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~-------~~~ 77 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-Q-------LNK 77 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-h-------cCC
Confidence 79999999999999999997 799999996533999999999998888888888887544332 2221 1 110
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC--HHHHHHHHHH---cCCcEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHVD---RDADITIS 247 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d--l~~ll~~h~~---~~ad~tl~ 247 (524)
....++.+... .+||.|+..+..++.........-++++++||++... |.+.++...+ .+.-+|+.
T Consensus 78 ~~~~ii~EP~~---------rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~G 148 (478)
T PRK15460 78 LTENIILEPAG---------RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFG 148 (478)
T ss_pred ccccEEecCCC---------CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 00134443332 5899998877766643100113578899999988542 5555554332 23333333
Q ss_pred EEEcCCCCCCcceEEEECCC---------CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH
Q 009817 248 CAAVGESRASDYGLVKIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (524)
Q Consensus 248 ~~~~~~~~a~~~g~v~id~~---------g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL 318 (524)
..|... .+.||+++.++. .+|..|.|||....++++.-. ..|++|+|||+|+.+.+
T Consensus 149 I~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~-------------G~y~WNsGiF~~~a~~~ 213 (478)
T PRK15460 149 IVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVAS-------------GEYYWNSGMFLFRAGRY 213 (478)
T ss_pred cCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHc-------------CCEEEecceeheeHHHH
Confidence 333222 268999998742 269999999998776544321 34899999999999988
Q ss_pred HHHHHhhCCC--------------CCch--h-hhhHH--------hhhh-c-CceEEEEecCeEeecCCHHHHHHH
Q 009817 319 FKLLRWRYPT--------------SNDF--G-SEIIP--------AAIM-E-HDVQAYIFRDYWEDIGTIKSFYEA 367 (524)
Q Consensus 319 ~~ll~~~~~~--------------~~d~--~-~dii~--------~li~-~-~~V~~y~~~~~w~dIgt~~d~~~A 367 (524)
+..++...|. ..++ . .+.++ .++- + .++.+.+.+..|-|+|+++++.+.
T Consensus 214 l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 214 LEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 7766654431 0010 0 12222 2222 2 568888888889999999999886
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=177.66 Aligned_cols=245 Identities=18% Similarity=0.281 Sum_probs=163.2
Q ss_pred eeEEEEeCCCCCcccCCc-cCCCccceeecCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 95 VAAIILGGGAGTKLFPLT-LRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT-~~~PKpLlpIgGk~pLId~~l~~l~~-sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
|..||||||.|||||||+ +..||+++++.|...|++.++.++.. .+.+++++||+.....+. .++.-+-+.+..
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v---~eql~e~~~~~~- 77 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIV---KEQLPEIDIENA- 77 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHH---HHHHhhhhhccc-
Confidence 689999999999999996 46999999996533999999999998 689999999987654321 122211111110
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC--HHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d--l~~ll~~h~~~~ad~tl~~~~ 250 (524)
. .++-+... +.||.|+..+.-.+.. ..+..-++|+++||+.... |.+.++...+.-....+++..
T Consensus 78 ~--~illEP~g---------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfG 144 (333)
T COG0836 78 A--GIILEPEG---------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFG 144 (333)
T ss_pred c--ceEeccCC---------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 1 14433322 4899999877655542 1233469999999988653 777777554322122344444
Q ss_pred cCCCCC-CcceEEEECC------CCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHH
Q 009817 251 VGESRA-SDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (524)
Q Consensus 251 ~~~~~a-~~~g~v~id~------~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~ 323 (524)
..+.++ +.||+++..+ -.+|.+|.|||....++++.-. ..+++++|+|+|+...+.+.++
T Consensus 145 I~Pt~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~s-------------G~y~WNSGmF~Fra~~~l~e~~ 211 (333)
T COG0836 145 IPPTRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVES-------------GEYLWNSGMFLFRASVFLEELK 211 (333)
T ss_pred cCCCCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHc-------------CceEeeccceEEEHHHHHHHHH
Confidence 433333 6899998854 2469999999998776544321 3489999999999998877666
Q ss_pred hhCCC-----------CCch--h---hhh--------HHhhhh--cCceEEEEecCeEeecCCHHHHHHHHH
Q 009817 324 WRYPT-----------SNDF--G---SEI--------IPAAIM--EHDVQAYIFRDYWEDIGTIKSFYEANM 369 (524)
Q Consensus 324 ~~~~~-----------~~d~--~---~di--------i~~li~--~~~V~~y~~~~~w~dIgt~~d~~~An~ 369 (524)
...|. ..+. . .+. +..++- ..++...+.+-.|-|+|++.++++...
T Consensus 212 ~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 212 KHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred hhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 54432 0010 0 111 222232 367888888889999999999987643
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=156.17 Aligned_cols=218 Identities=16% Similarity=0.220 Sum_probs=150.2
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.|||||||.||||.|||...||+|+.|.|+ |||+++++.|.++||++|+|||||..+++ +++...| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy-------~--- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY-------D--- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc-------C---
Confidence 6899999999999999999999999999999 99999999999999999999999998875 5676443 3
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEE-EEEEEcCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADIT-ISCAAVGE 253 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~t-l~~~~~~~ 253 (524)
|+++....-. .-....++..|+++++ +.-|+.+|.....++ +......-. .++....
T Consensus 69 vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~- 126 (231)
T COG4750 69 VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG- 126 (231)
T ss_pred eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC-
Confidence 6666543221 1256688889998884 778899999876554 111111111 1222221
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHH---HHHHHHhhCCC--
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV---LFKLLRWRYPT-- 328 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~v---L~~ll~~~~~~-- 328 (524)
..+-=++..+.+|+|+.+.---. ..+..+|+..|+... +..+++..+-.
T Consensus 127 --~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 --KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 12223567788899998764222 246788999999864 44455554322
Q ss_pred -CCchhhhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHhh
Q 009817 329 -SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 329 -~~d~~~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l~ 372 (524)
..-|..++.-.-+++.+++.-..++ .-+++++.++|......++
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 1123334554555555666555543 4778999999988877644
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-16 Score=160.00 Aligned_cols=236 Identities=16% Similarity=0.160 Sum_probs=155.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
..+.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+| +..+.+.+.+++. . ++
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~-~-------~~- 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCR-G-------FG- 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHH-H-------cC-
Confidence 35789999999999993 5999999999 99999999999876544433 3355667765553 1 22
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEE--
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC-- 248 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~-- 248 (524)
++++...+. +..||+++ ..++..++ ...+.++++.||. +.. ..+.++++.+.+. +++++++
T Consensus 109 --v~vi~~~~~-------~~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~ 173 (293)
T PLN02917 109 --ADVIMTSES-------CRNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAV 173 (293)
T ss_pred --CEEEeCCcc-------cCCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEe
Confidence 233321111 12378776 46766664 1247899999999 333 4689999988654 4444432
Q ss_pred EEcCCCCCCcceEEE--ECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 249 AAVGESRASDYGLVK--IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~--id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
.+...+++.+||.++ .|++|+++.|..++-.....+ .++ .....+.++|+|.|+.+.|.. +....
T Consensus 174 ~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~--~~~i~~~n~Giy~f~~~~L~~-l~~l~ 240 (293)
T PLN02917 174 TSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVN--PQFPYLLHLGIQSYDAKFLKI-YPELP 240 (293)
T ss_pred eecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------ccc--cccceEEEEEEEEeCHHHHHH-HHcCC
Confidence 333334467899886 788899887775432111000 000 112368899999999999884 44322
Q ss_pred C---CCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhcc
Q 009817 327 P---TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 327 ~---~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~ 374 (524)
+ ..+.+.++++ .+-++.+|.++..+.....|+|++||..|+..+.++
T Consensus 241 ~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 241 PTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 2 2455667766 333346898888876677999999999999987544
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-14 Score=138.13 Aligned_cols=218 Identities=16% Similarity=0.124 Sum_probs=141.0
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCc-hhHHHHHHHhhhcCCccc
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~ 170 (524)
..+.+||||||.|+||. ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+ .+... .
T Consensus 2 ~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~----~~~~~---~ 70 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAE----LLLAK---D 70 (227)
T ss_pred CceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHH----Hhhcc---C
Confidence 45789999999999994 3479999999999 99999999999865 899999998754 22222 11111 0
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~ 248 (524)
..+.++. .. .+.+++++.++..+. ..+.++++.||. +.. ..+.++++.+.+.+ ..+.+
T Consensus 71 --~~~~~~~--~~---------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~ 130 (227)
T PRK00155 71 --PKVTVVA--GG---------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILA 130 (227)
T ss_pred --CceEEeC--Cc---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEE
Confidence 1133332 11 246889998887763 246899999998 333 45899999876653 33444
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.+..+ .+.. ++++|.+..+.+ ... ....-+.|.|+.+.|.+++......
T Consensus 131 ~~~~~----~~~~--v~~~g~~~~~~~---r~~----------------------~~~~~~p~~f~~~~l~~~~~~~~~~ 179 (227)
T PRK00155 131 VPVKD----TIKR--SDDGGGIVDTPD---RSG----------------------LWAAQTPQGFRIELLREALARALAE 179 (227)
T ss_pred Eeccc----cEEE--EcCCCceeecCC---hHH----------------------heeeeCCccchHHHHHHHHHHHHhc
Confidence 44432 1222 255566655422 111 1122247999999988877653322
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
..+..|....+.+ ..++..+..+..+.+|+|++||..|+..+..
T Consensus 180 -~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 180 -GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred -CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 2223333322222 2567777766678899999999999876643
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-14 Score=136.84 Aligned_cols=210 Identities=14% Similarity=0.108 Sum_probs=139.5
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHHhhhcCCcccCCCe
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+||||||.|+||.. ..||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+..++ +. . ..
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~-----~~---~--~~ 67 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYL-----VA---R--AV 67 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHh-----hc---C--Cc
Confidence 79999999999963 369999999999 9999999999998 8999999998754 2332222 11 0 01
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++. .. .+..++++.++..++ ..+.++++.||. +.. ..+..+++.+.+. +..+++.+..
T Consensus 68 ~~~~~--~~---------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~ 129 (217)
T TIGR00453 68 PKIVA--GG---------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA 129 (217)
T ss_pred EEEeC--CC---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc
Confidence 33332 11 134578888876651 247899999998 444 4578888877653 3444454443
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~ 332 (524)
.++..+|++|.+..+.++... ....+ .|.|+...|.+++....... .+
T Consensus 130 ------~~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~~~~~~-~~ 177 (217)
T TIGR00453 130 ------DTLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALARAKEEG-FE 177 (217)
T ss_pred ------ceEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHHHHhcC-CC
Confidence 234555667777776663211 22333 69999999988776432222 22
Q ss_pred hhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHH
Q 009817 333 GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (524)
Q Consensus 333 ~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~ 370 (524)
..|....+.. ..++..+..+..+.+|+|++||..|+..
T Consensus 178 ~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 2333333322 3578777777777899999999988754
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=136.41 Aligned_cols=229 Identities=15% Similarity=0.193 Sum_probs=144.6
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
+||+|+|.|+||. +|+|++++|+ |||+|+++++.++++++|+|++.. +.+.+++. . ++ ++
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~-------~g---~~ 61 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-K-------FG---IE 61 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-H-------cC---CE
Confidence 7999999999993 7999999999 999999999999899999999864 44544442 2 22 22
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
++...+. ...|+. .+..+...+.. ...+.++++.||. +.. ..+.++++.+.+.+.+++.++.+..+.
T Consensus 62 ~v~~~~~-------~~~Gt~-r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~ 130 (238)
T TIGR00466 62 VCMTSKH-------HNSGTE-RLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDA 130 (238)
T ss_pred EEEeCCC-------CCChhH-HHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCH
Confidence 2211111 012443 33333333320 1236788899998 444 457889988866567777777776542
Q ss_pred CC---CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009817 255 RA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (524)
Q Consensus 255 ~a---~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d 331 (524)
.. .+...+..|.+|+...|...+-...-..+ ...-.|+. ..++...|+|.|++++|.++.......-+.
T Consensus 131 ~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~~~~le~ 202 (238)
T TIGR00466 131 EEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWKPCVLEE 202 (238)
T ss_pred HHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCCCCcccc
Confidence 11 22344455778888888765332110000 00111221 236779999999999999877653221111
Q ss_pred h-hhhhHHhhhhcCceEEEEecCe-EeecCCHHHH
Q 009817 332 F-GSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 364 (524)
Q Consensus 332 ~-~~dii~~li~~~~V~~y~~~~~-w~dIgt~~d~ 364 (524)
. .-|.+..+-.+.+|.....+.. -..|+|++|+
T Consensus 203 ~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 203 IEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1 1245666666788999888765 4599999997
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-14 Score=134.61 Aligned_cols=212 Identities=17% Similarity=0.187 Sum_probs=140.8
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
.+||||||.|+||++. .||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+ .+. ..
T Consensus 2 ~~vILAaG~s~R~~~~---~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~-----~~~-~~ 70 (218)
T cd02516 2 AAIILAAGSGSRMGAD---IPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KY-----GLS-KV 70 (218)
T ss_pred EEEEECCcccccCCCC---CCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hc-----ccC-CC
Confidence 5899999999999752 79999999999 99999999999976 99999999886654433321 11 011 11
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++... .+..++++.++..++. ...+.++++.||+ +.. ..+.++++.+.+.++ .+.+.+..
T Consensus 71 ~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~ 134 (218)
T cd02516 71 VKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVT 134 (218)
T ss_pred eEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEecc
Confidence 3443221 1457889988877631 1347899999998 334 458999998865443 34444433
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~ 332 (524)
+ ++...|++|.+..+.+..+ -....++ ++|+.+.|.+++....... .+
T Consensus 135 ~------~~~~~~~~g~~~~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~~-~~ 182 (218)
T cd02516 135 D------TIKRVDDDGVVVETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEEG-EE 182 (218)
T ss_pred c------cEEEecCCCceeecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhcC-CC
Confidence 2 2344677888888776322 1345666 9999999988886554332 23
Q ss_pred hhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHH
Q 009817 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYE 366 (524)
Q Consensus 333 ~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~ 366 (524)
..|....+.+. .++..+.-+..-+||+|++||..
T Consensus 183 ~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 183 FTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 34443333222 46777665555669999999954
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.8e-15 Score=143.48 Aligned_cols=38 Identities=37% Similarity=0.475 Sum_probs=32.1
Q ss_pred chhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccC
Q 009817 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 331 d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
+| .|.++.++.++ ++.++|||.|+ ++|++||++++...
T Consensus 29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~ 66 (231)
T TIGR03532 29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDY 66 (231)
T ss_pred cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcce
Confidence 44 47788888766 88899999999 99999999999764
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-13 Score=130.30 Aligned_cols=214 Identities=19% Similarity=0.240 Sum_probs=137.5
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+.+||||||.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. .+ +.
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~-~~-------~~- 63 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVAR-KY-------GA- 63 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHH-Hh-------CC-
Confidence 579999999999993 4999999999 99999999999987 788888773 445554442 11 10
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+.+.......++ ..|+.++++.++..++.. ....+.++++.||. +....+.++++.+.+.+++.++.+.+.
T Consensus 64 ~~~~~~~~~~~~~-----~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 64 EVPFLRPAELATD-----TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred CceeeCChHHCCC-----CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 0112211111000 138899999998877521 01237899999999 444678999999988778877777665
Q ss_pred CCCCCCcceEEEECCCC-cEEEEEec--CCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 252 GESRASDYGLVKIDNMG-RIAQFAEK--PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g-~V~~~~EK--p~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.+. .-++.. .+++| .+..+.++ +...+. ...+..++|+|+++++.|.+.
T Consensus 138 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~q~~------------------~~~~~~n~~~y~~~~~~~~~~------- 189 (223)
T cd02513 138 HRF--PWRALG-LDDNGLEPVNYPEDKRTRRQDL------------------PPAYHENGAIYIAKREALLES------- 189 (223)
T ss_pred CcC--cHHhee-eccCCceeccCcccccCCcCCC------------------hhHeeECCEEEEEEHHHHHhc-------
Confidence 442 123232 22333 22222111 111110 023567889999999977531
Q ss_pred CCchhhhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHH
Q 009817 329 SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMA 370 (524)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~ 370 (524)
. . .+ ..++..|..+. .-.||+|++||..|...
T Consensus 190 ~-~----~~-----g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 190 N-S----FF-----GGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred C-C----cc-----CCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 0 0 01 45787887776 48999999999988653
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-13 Score=140.79 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=138.6
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
|.++.+||||||.|+||. ...||+++|++|+ |||+|+++++.+++ +++|+|++++....+.+.+ .. .+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~----~~---~~ 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKA----LP---EI 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHh----cc---cC
Confidence 566889999999999994 3589999999999 99999999999987 7999999987654433222 11 11
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCCcEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tl~~ 248 (524)
. .+.++... .+..++|+.++..++ .+.+++..||. +... .+..+++...+ .+..+.+
T Consensus 72 ~--~v~~v~gG-----------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~ 130 (378)
T PRK09382 72 K--FVTLVTGG-----------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPA 130 (378)
T ss_pred C--eEEEeCCC-----------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEE
Confidence 1 13333211 246789999987764 26788889986 4443 46777776654 3567777
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.++.++ ..|+...+|. ..+..+ ++|.... .+.+.... ..
T Consensus 131 ~pv~Dt--ik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~----~~ 169 (378)
T PRK09382 131 LPVADT--LKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAA----DG 169 (378)
T ss_pred EEeccC--cEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHH----hC
Confidence 787663 3465445543 355444 6776442 11122111 11
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
..+ ..|..+.+.. ..+|..+.-+..|.+|+||+||..|+..+..
T Consensus 170 ~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 170 RGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 122 2344444433 3688888888899999999999999987754
|
|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.53 E-value=9e-14 Score=132.11 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=94.2
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.+||||||+||||++ .||+|+|++|+ |||+|+++++.++++++|+|+++++.+.+..|+...+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999975 79999999999 9999999999999999999999988777766664211
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--ccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..+.. + . -.|.+.++..++..+. ..++|++++||+.+ ...+..+++.+...+.+....+.+
T Consensus 65 ~~~~~-~--~-------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 KDYKN-A--S-------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred cEEEe-c--C-------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11221 1 1 1477788887765432 24799999999854 456888999887666555444433
|
At this time this gene appears to be present only in Archea |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=119.26 Aligned_cols=103 Identities=35% Similarity=0.570 Sum_probs=90.4
Q ss_pred CeEEc-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe
Q 009817 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 474 (524)
Q Consensus 396 ~~~i~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~ 474 (524)
|++|+ +++|.+++||++|.|+++.|++|+|+++++|+++++|.+++++++ +.||.++.++
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 35554 477889999999999989999999999999999999999999998 8999999999
Q ss_pred eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEe
Q 009817 475 NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATI 518 (524)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i 518 (524)
+|+|+++++||+++.+.+....++ .++.+...|+++|++++.+
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDR-ARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred eEEECCCCEECCCCEECCCccccc-ccceEcCCeEEEEecccCC
Confidence 999999999999999998853333 4667778999999998754
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=127.36 Aligned_cols=119 Identities=13% Similarity=0.228 Sum_probs=88.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+..++. . .++ +.
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~----~---~~~---v~ 65 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLA----N---HSN---IT 65 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc----c---CCC---eE
Confidence 7999999999997 48999999999 9999999999999999999999987665443332 1 122 45
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cc-cCHHHHHHHHHHcCCcE
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADI 244 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~-~dl~~ll~~h~~~~ad~ 244 (524)
++.... |..|++++++.++.+ . ...+.++++.||+- +. ..+..+++.+...+.++
T Consensus 66 ~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 66 LVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 543221 225889999988762 1 13478999999993 33 45788888876655543
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=127.81 Aligned_cols=121 Identities=19% Similarity=0.304 Sum_probs=93.2
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~ 176 (524)
+||||||.|+||. .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++..++. .++ ++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~--------~~~---~~ 61 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE--------RYG---IK 61 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT--------TTT---SE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh--------ccC---ce
Confidence 6999999999996 49999999999 999999999999999999999988 34443332 122 45
Q ss_pred EEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 177 vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
++..... ..|++++++.++..+. ..+.|++++||+.+ . ..+..+++.+.+.++++.+...
T Consensus 62 ~v~~~~~--------~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 62 VVVDPEP--------GQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEE-STS--------SCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred EEEeccc--------cCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 5543321 2599999999987762 35999999999954 4 4579999998877777655443
|
... |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=129.15 Aligned_cols=218 Identities=15% Similarity=0.121 Sum_probs=136.5
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHHhhhcCCcccCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~-l~~hl~~~y~~~~~~~~~ 172 (524)
+.+||||||.|+||. ...||+|++++|+ |||+|+++++.++ .+++|+|+++..... +.+.+ +.| .+..
T Consensus 3 ~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~-~~~-----~~~~ 72 (230)
T PRK13385 3 YELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLM-KQL-----NVAD 72 (230)
T ss_pred eEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHH-Hhc-----CcCC
Confidence 678999999999995 3479999999999 9999999999986 589999999764322 22222 222 1111
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..++++... .+..++++.++..++ ..+.++++.||. +... .+.++++.+.+.++ .+.+.+
T Consensus 73 ~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~~~ 134 (230)
T PRK13385 73 QRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICAVE 134 (230)
T ss_pred CceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEEEe
Confidence 124444211 133588888887764 235678889998 4444 47888888776554 333333
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
..+ .++...+|.+....+ +. ..+..-+.|.|+.+.|.+..+......
T Consensus 135 ~~d-------ti~~~~~~~~~~~i~--r~-----------------------~~~~~qtpq~f~~~~l~~~~~~~~~~~- 181 (230)
T PRK13385 135 VKD-------TVKRVKDKQVIETVD--RN-----------------------ELWQGQTPQAFELKILQKAHRLASEQQ- 181 (230)
T ss_pred ccc-------eEEEEcCCeeEeccC--HH-----------------------HHhhhcCCceeeHHHHHHHHHHHHhcC-
Confidence 322 122223354433221 11 123334579999988877665432222
Q ss_pred chhhhhHHhhh-hcCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 331 DFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 331 d~~~dii~~li-~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
.+..|....+. ...+|..+.-+.....|+|++|+..|...+..
T Consensus 182 ~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 182 FLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred CCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 22334232232 23677877777788999999999999877643
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-12 Score=117.07 Aligned_cols=110 Identities=23% Similarity=0.362 Sum_probs=86.3
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.+||||||+||||.- .-|||++++|+ |||+|+++.+.+ .+++|++.+..+......|+... +
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------g--- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------G--- 63 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------C---
Confidence 5699999999999972 45999999999 999999999988 88999999999998888887522 2
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccC-HHHHHHHHH
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHV 238 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h~ 238 (524)
++++. +++ .|--.-++.++..+. .++|++++|+.+ +.. +..+++.+.
T Consensus 64 v~vi~---tpG-------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 VKVIE---TPG-------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEE---cCC-------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 66664 333 266677777776664 599999999955 433 566666654
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-13 Score=123.73 Aligned_cols=120 Identities=19% Similarity=0.344 Sum_probs=89.7
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++++.++++++|+|++++....+..++. .++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~--- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA--------GLP--- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc--------CCC---
Confidence 4689999999999975 8999999999 9999999999999999999999987654433221 122
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCc
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDAD 243 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad 243 (524)
+.++.... +..|++++++.++..+.. ..+.++++.||+ +. ...+..+++.+...+++
T Consensus 64 ~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33333222 125999999999877641 347899999999 33 34578888877654443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-12 Score=119.57 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=84.1
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+... +++|+|++++..+. . . .++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~-~-------~~~--- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----Y-A-------LLG--- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----H-h-------hcC---
Confidence 4689999999999973 9999999999 9999999999988 89999999886543 1 1 111
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccc-CHHHHHHHHHHcCCcE
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRM-DYMDFIQSHVDRDADI 244 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~~-dl~~ll~~h~~~~ad~ 244 (524)
+.++.... |..|..++|+.++..++ .+.++++.||+- ... .+..+++.+ ..+.++
T Consensus 59 ~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 59 VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 33443221 23599999999987663 479999999994 343 467777766 334443
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=117.42 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=82.5
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|..|.+||||||.|+||. ..||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ . . ++
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~-~-------~~ 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----A-A-------FG 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----H-h-------cC
Confidence 456899999999999995 268999999999 99999999998 78999999987643211 1 1 11
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHc
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDR 240 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~ 240 (524)
+.++..... +..|+..+|+.++...+ .+.++++.||+ +... .+..+++.+.+.
T Consensus 63 ---~~~v~~~~~-------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 63 ---LPVIPDSLA-------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred ---CcEEeCCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 233322111 12588899998876542 47899999999 4454 467777765433
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-11 Score=113.90 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=83.2
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+.+||||||.|+||. ..||+|+|++|+ |||+|+++++.. ++++|+|+++...+. +.. . .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~-----~--~~~--- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQ-----A--GFG--- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhh-----c--cCC---
Confidence 468999999999996 259999999999 999999999976 599999998764321 111 1 112
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHHHHHcCCc
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 243 (524)
+.++..... +..|+.++|+.++..++ .+.++++.||+ +...+ +.++++.+.+.+++
T Consensus 62 ~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 333432211 23699999999987764 47899999999 55544 57777765443443
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=114.47 Aligned_cols=215 Identities=16% Similarity=0.231 Sum_probs=141.5
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V 175 (524)
|||||+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.|.. +.+.+.. +.| +. .+
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a-~~~-------g~-~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVA-KSY-------GA-SV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHH-HHc-------CC-Ee
Confidence 7999999999993 5999999999 99999999999986 7888776643 4454433 222 21 12
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.++...... .+..|+.++++.++..++.. ...+.++++.+|.=+. .++.++++.+.+.++|..+.+.+...
T Consensus 64 ~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~ 136 (222)
T TIGR03584 64 PFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF 136 (222)
T ss_pred EEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 222111110 11248899999998877521 2247899999998443 56899999988877888888877543
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~ 333 (524)
. + .+. ...+++|+...+........ .++. ...+..+.++|+++++.|.+ . . .+
T Consensus 137 ~-~-~~~-~~~~~~g~~~~~~~~~~~~~--------------rQd~-~~~y~~nga~y~~~~~~~~~---~----~-~~- 189 (222)
T TIGR03584 137 P-I-QRA-FKLKENGGVEMFFPEHFNTR--------------SQDL-EEAYHDAGQFYWGKSQAWLE---S----G-PI- 189 (222)
T ss_pred C-h-HHh-eEECCCCcEEecCCCcccCC--------------CCCC-chheeeCCeEEEEEHHHHHh---c----C-Cc-
Confidence 1 1 122 24456677666542211000 0010 02366799999999998752 1 1 11
Q ss_pred hhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHh
Q 009817 334 SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 334 ~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l 371 (524)
+ ..++..|..+. .-+||+|++||.-|...+
T Consensus 190 ---~-----~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 ---F-----SPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred ---c-----CCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 1 34678888775 489999999999997643
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=120.55 Aligned_cols=139 Identities=24% Similarity=0.288 Sum_probs=96.3
Q ss_pred CCCCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhhh
Q 009817 383 PKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLL 458 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~ 458 (524)
+...+...+.++++++|. ++.|.++.|+++|.|+ ++.+++++|+.+++|++++.|. ++.+..+..++...++ .+.+
T Consensus 26 ~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~i 105 (193)
T cd03353 26 PGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTI 105 (193)
T ss_pred CCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceE
Confidence 333344444555555553 3666777888888887 5777788888888888888886 4555555555554444 4566
Q ss_pred cCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 459 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 459 ~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+++ +.|++.+.|.+|+||+++.||+++++.+.+. .....++.+|+.+. +.|++++.|++|++|
T Consensus 106 g~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 106 GEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred cCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 777 6778888888999999999999999887541 23455567776663 478888888888764
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.6e-11 Score=116.80 Aligned_cols=220 Identities=12% Similarity=0.080 Sum_probs=131.3
Q ss_pred CCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcc
Q 009817 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTN 169 (524)
Q Consensus 91 ~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~ 169 (524)
.+..+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+. ++++|+|++++......+.+.+.
T Consensus 21 ~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~------- 89 (252)
T PLN02728 21 KEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN------- 89 (252)
T ss_pred ccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-------
Confidence 3566889999999999995 3479999999999 9999999999984 89999999987644333222111
Q ss_pred cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce---eccc-CHHHHHHHHHHcCCcEE
Q 009817 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH---LYRM-DYMDFIQSHVDRDADIT 245 (524)
Q Consensus 170 ~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~---l~~~-dl~~ll~~h~~~~ad~t 245 (524)
++ ..+.+.. .. .+..++|+.++..++ .+..+|+.+|. +... .+..+++...+.++ .
T Consensus 90 ~~-~~i~~v~--gg---------~~r~~SV~~gl~~l~------~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~ 149 (252)
T PLN02728 90 ID-VPLKFAL--PG---------KERQDSVFNGLQEVD------ANSELVCIHDSARPLVTSADIEKVLKDAAVHGA--A 149 (252)
T ss_pred cC-CceEEcC--CC---------CchHHHHHHHHHhcc------CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--E
Confidence 21 1133221 11 144678988887664 13455666773 3443 46888887766554 4
Q ss_pred EEEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhh
Q 009817 246 ISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (524)
Q Consensus 246 l~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~ 325 (524)
+.+.++.+ .+..+++++.|.. .+....+ +.-=-=-.|+.+.|.+..+..
T Consensus 150 i~~~~~~d------tik~v~~~~~v~~---t~~R~~l----------------------~~~QTPQ~F~~~~l~~a~~~~ 198 (252)
T PLN02728 150 VLGVPVKA------TIKEANSDSFVVK---TLDRKRL----------------------WEMQTPQVIKPELLRRGFELV 198 (252)
T ss_pred EEeecchh------hEEEecCCCceee---ccChHHe----------------------EEEeCCccchHHHHHHHHHHH
Confidence 55555443 1233455554433 2322211 111112456777666655543
Q ss_pred CCCCCchhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 326 YPTSNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 326 ~~~~~d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
...... ..|-...+.. ..+|....-+..-+-|.||+|+..|+..+..
T Consensus 199 ~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 199 EREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 222212 2332222222 3456665544557789999999999886653
|
|
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9e-11 Score=110.98 Aligned_cols=121 Identities=18% Similarity=0.319 Sum_probs=93.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
+..+.+||||||+|+||. .+|.|.|+.|+ ||+++.++.+.+++.+++++++++...... ..+..
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~----~a~~~------ 66 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAV----EALLA------ 66 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHH----Hhhhc------
Confidence 456789999999999998 78999999999 999999999999999999999999722221 12211
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHc
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR 240 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~ 240 (524)
...+.++... +|.+|.+.+++.+...+.. ..+.++++.||+ +...++..+++.+..+
T Consensus 67 ~~~~~~v~np--------d~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 67 QLGVTVVVNP--------DYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred cCCeEEEeCc--------chhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 1125555443 3568999999999887752 125899999998 4456788888877665
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=113.59 Aligned_cols=91 Identities=15% Similarity=0.322 Sum_probs=71.9
Q ss_pred CCCCCCCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcC
Q 009817 385 TPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 460 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~ 460 (524)
..+.....+++++.|. ++.|. +++||++|.|+ ++.|. +++||++|.|+++++|.+++++.+
T Consensus 12 ~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~--------------- 76 (163)
T cd05636 12 VTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG--------------- 76 (163)
T ss_pred CEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC---------------
Confidence 3344444455555553 34443 58899999997 67776 699999999999999999998887
Q ss_pred CccceEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 009817 461 GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 461 g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.|++++.+.+|+|+++++|++++++.+..
T Consensus 77 ----~~I~~~~~i~~siIg~~~~I~~~~~i~~~~ 106 (163)
T cd05636 77 ----TKVPHLNYVGDSVLGENVNLGAGTITANLR 106 (163)
T ss_pred ----CEeccCCEEecCEECCCCEECCCcEEcccC
Confidence 899999999999999999999999997753
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=99.64 Aligned_cols=78 Identities=15% Similarity=0.418 Sum_probs=51.1
Q ss_pred ECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCC
Q 009817 409 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (524)
Q Consensus 409 Ig~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (524)
||++|.|+ ++.|.+++||++|.|+++++|++++++.+ +.||+++.|.+|+|++++.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 45555555 34555666777777777777766666666 66777777777777777777777
Q ss_pred cEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCc
Q 009817 488 VVIVNKDEADRPELGFYIRSGITIIMEKATIEDGM 522 (524)
Q Consensus 488 ~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gt 522 (524)
+.+.++ +|++++.|++++
T Consensus 63 ~~v~~~-----------------ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDC-----------------LVGSGYRVEAGT 80 (81)
T ss_pred CEEccC-----------------EECCCcEeCCCC
Confidence 766654 666666666664
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-11 Score=122.12 Aligned_cols=47 Identities=11% Similarity=-0.068 Sum_probs=26.8
Q ss_pred eEeecCCHHHHHHHHHHhhccCCC-ccccCCCCCCCCCCccCCCeEEc
Q 009817 354 YWEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPTKID 400 (524)
Q Consensus 354 ~w~dIgt~~d~~~An~~l~~~~~~-~~~~~~~~~i~~~~~i~p~~~i~ 400 (524)
.+.-+++|...+..-..++...++ ...++|.+.+.+++.++++++|.
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~ 113 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIG 113 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEEC
Confidence 356678887666554555543322 34456666666666666555553
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.1e-11 Score=118.60 Aligned_cols=59 Identities=27% Similarity=0.332 Sum_probs=31.1
Q ss_pred eEeCCCcEEee-eEECCCCEECCCcEEeCCC---CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 465 IGVGRNTKIRN-CIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 465 ~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+.||++++|+| +-|++||+||++|.|.++. +..++.+.+. -.|.+.|.....|+|++.|
T Consensus 225 TvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~-igg~vgI~gh~~IgD~~~I 287 (338)
T COG1044 225 TVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVI-IGGQVGIAGHLEIGDGVTI 287 (338)
T ss_pred ceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEE-ECcceeecCceEEcCCCEE
Confidence 45555555544 5666666666666666664 2223322222 2344555555666666543
|
|
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-10 Score=109.47 Aligned_cols=184 Identities=12% Similarity=0.212 Sum_probs=112.7
Q ss_pred CCCCceeEEEEeCCCCCcccCCccCCCccceeecC-cchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCc
Q 009817 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGT 168 (524)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgG-k~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~ 168 (524)
+++..+.+||||||.|+||+ .+|+|+|++| + |||+++++++... +++|+|++++ +. | .
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~--------~-~--- 62 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KK--------F-E--- 62 (196)
T ss_pred ccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hh--------c-c---
Confidence 45567889999999999995 5899999999 9 9999999999876 8999999875 11 1 0
Q ss_pred ccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccC-HHHHHHHHHHcCCcEEE
Q 009817 169 NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHVDRDADITI 246 (524)
Q Consensus 169 ~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~h~~~~ad~tl 246 (524)
+. ++++...+.. ..|...++..++... ..+.++++.||+-+ ..+ +.++.. +.+.++
T Consensus 63 -~~---~~~v~d~~~~-------~~gpl~gi~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l~~---~~~~~~-- 120 (196)
T PRK00560 63 -FN---APFLLEKESD-------LFSPLFGIINAFLTL------QTPEIFFISVDTPFVSFESIKKLCG---KENFSV-- 120 (196)
T ss_pred -cC---CcEEecCCCC-------CCCcHHHHHHHHHhc------CCCeEEEEecCcCcCCHHHHHHHHh---cCCCCE--
Confidence 11 2333321111 236666666555433 24899999999944 544 345421 111111
Q ss_pred EEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 247 SCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 247 ~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
+....+++ . ..-+.+|+++.+..+.+...
T Consensus 121 ---------------~~~~~~~~--------~----------------------------~Pl~al~~~~~~~~l~~~l~ 149 (196)
T PRK00560 121 ---------------TYAKSPTK--------E----------------------------HYLISLWHQSLLNALIYALK 149 (196)
T ss_pred ---------------EEEccCCc--------e----------------------------eeeEEEEcHHHHHHHHHHHH
Confidence 11111111 0 11136788888876543221
Q ss_pred CCCCchhhhhHHhhhhcCceEEEEecC--eEeecCCHHHHHHHHHHhh
Q 009817 327 PTSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 327 ~~~~d~~~dii~~li~~~~V~~y~~~~--~w~dIgt~~d~~~An~~l~ 372 (524)
.. + .-+..++++..+..+.+++ .|.||+|++||..+...+.
T Consensus 150 ~~--~---~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~~ 192 (196)
T PRK00560 150 TQ--N---YRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQILK 192 (196)
T ss_pred hC--C---ccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHHH
Confidence 11 1 1133444555566665553 5789999999988876553
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-10 Score=106.52 Aligned_cols=235 Identities=15% Similarity=0.225 Sum_probs=161.8
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+...||+|-=..||| .-|||-.|+|+ |||.|+.++..++|.++++|.|.. +++.+++. .||.
T Consensus 3 ~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~--------~~G~- 64 (247)
T COG1212 3 KFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ--------AFGG- 64 (247)
T ss_pred ceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH--------HhCC-
Confidence 456899999999999 46999999999 999999999999999999999964 66777774 3431
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+ ++..... ..|| +-+..+...+. ....+.++=+-||. +.. ..+.++++...+.++++.-++.+.
T Consensus 65 ~a-vmT~~~h--------~SGT-dR~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i 131 (247)
T COG1212 65 EA-VMTSKDH--------QSGT-DRLAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKI 131 (247)
T ss_pred EE-EecCCCC--------CCcc-HHHHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeec
Confidence 12 2222211 2466 44444444442 12345566668997 333 457888888887788877677666
Q ss_pred CCCC---CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 252 GESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 252 ~~~~---a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.++. ..+-..+..|.+|+-+.|+..|-....+. . ...+.+--.|+|.|++++|.++..+....
T Consensus 132 ~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~ps~ 197 (247)
T COG1212 132 TDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALKPSP 197 (247)
T ss_pred CCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcCCch
Confidence 5432 13455677899999999998775443111 0 00357889999999999999888765422
Q ss_pred CCchh-hhhHHhhhhcCceEEEEecCeE-eecCCHHHHHHHHHHhhc
Q 009817 329 SNDFG-SEIIPAAIMEHDVQAYIFRDYW-EDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~-~dii~~li~~~~V~~y~~~~~w-~dIgt~~d~~~An~~l~~ 373 (524)
-+... -+-|..+-..++|.+...+..- ..++|++||..+...+.+
T Consensus 198 LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 198 LEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred hHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 21111 1334444456899999888665 899999999999887754
|
|
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-10 Score=108.92 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=80.7
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
..+.+||||||.|+||. .+|+|+|++|+ |||+|+++.+... +++|+|++++. +.. ..+ .. .
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~-~~~----~~----~-- 66 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERY-QSL----LP----P-- 66 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHH-Hhh----cc----C--
Confidence 35789999999999996 47999999999 9999999999754 78999988642 211 111 11 1
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccc-CHHHHHHHHH
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRM-DYMDFIQSHV 238 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~~-dl~~ll~~h~ 238 (524)
.+.++.... |.+|..++++.++..++ .+.++|+.||+- ... .+..+++.+.
T Consensus 67 -~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 -GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 144443322 23699999999988764 378999999993 344 3677777654
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-11 Score=113.26 Aligned_cols=109 Identities=15% Similarity=0.293 Sum_probs=72.3
Q ss_pred CCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEe-----ceEEeCCccccchhhHHh
Q 009817 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIAS 456 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~-----~s~i~~~~~~~~~~~~~~ 456 (524)
+..++.+.|.+.|. .++.||++|.|. +|.|. .++||.+|.|+++|.|+ +++++.+
T Consensus 11 i~~~~~I~~~a~I~----G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~----------- 75 (192)
T TIGR02287 11 VHPEAYVHPTAVLI----GDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN----------- 75 (192)
T ss_pred CCCCcEECCCCEEE----eeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-----------
Confidence 33444444444442 256777777777 55554 46899999999999994 4555555
Q ss_pred hhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCc
Q 009817 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGM 522 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gt 522 (524)
+.||+++.|++|+|++++.||.+++|.+.. ...++..|..| .+|.++..|++++
T Consensus 76 --------~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~---~IG~~s~Vgag-s~V~~~~~ip~~~ 129 (192)
T TIGR02287 76 --------GHVGHGAILHGCIVGRNALVGMNAVVMDGA---VIGENSIVAAS-AFVKAGAEMPAQY 129 (192)
T ss_pred --------CEECCCCEEcCCEECCCCEECCCcccCCCe---EECCCCEEcCC-CEECCCCEECCCe
Confidence 899999999999999999999999997752 23333444433 2344444444443
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=107.27 Aligned_cols=95 Identities=15% Similarity=0.327 Sum_probs=66.1
Q ss_pred ceEECCCCEEC-ceEEec----eEEcCCcEECCCCEE-----eceEEeCCccccchhhHHhhhcCCccceEeCCCcEEee
Q 009817 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~~----siIg~~~~Ig~~~~I-----~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~ 475 (524)
++.||++|+|+ ++.|.. ++||++|.|+++|.| .+++++.. +.|++++.+.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEEC
Confidence 56777777776 465653 789999999999999 44666665 88999999999
Q ss_pred eEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 476 CIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
|+||+++.||.++.|.+.. ...++..|..+ ++|.++..|+++++
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g~---~Ig~~~~Ig~~-s~v~~~~~i~~~~~ 122 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGA---VIGEESIVGAM-AFVKAGTVIPPRSL 122 (155)
T ss_pred CEECCCCEECCCCEEeCCC---EECCCCEECCC-CEeCCCCEeCCCCE
Confidence 9999999999998887752 33334444443 24444444554443
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-10 Score=119.12 Aligned_cols=43 Identities=9% Similarity=0.002 Sum_probs=21.1
Q ss_pred cCCHHH-HHHHHHHhhccC--CCccccCCCCCCCCCCccCCCeEEc
Q 009817 358 IGTIKS-FYEANMALTKES--PAFHFYDPKTPFYTSPRFLPPTKID 400 (524)
Q Consensus 358 Igt~~d-~~~An~~l~~~~--~~~~~~~~~~~i~~~~~i~p~~~i~ 400 (524)
+++|.. |..+...+..+. .....++|.+.+.+++.++++++|.
T Consensus 77 ~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~ 122 (343)
T PRK00892 77 VKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIG 122 (343)
T ss_pred eCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEEC
Confidence 455543 444444443222 1123456666666665555555553
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.3e-11 Score=96.22 Aligned_cols=77 Identities=13% Similarity=0.404 Sum_probs=69.0
Q ss_pred cCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 393 i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
++++++|+ ++.|.+++|+++|.|+ ++.|++|+|++++.|+++++|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 45666674 4677789999999998 68999999999999999999999999988 999999
Q ss_pred cEEeeeEECCCCEECCCc
Q 009817 471 TKIRNCIIDKNVKIGKDV 488 (524)
Q Consensus 471 ~~I~~~iI~~~~~Ig~~~ 488 (524)
+.+++|+|+++++|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999875
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=107.58 Aligned_cols=92 Identities=24% Similarity=0.429 Sum_probs=58.2
Q ss_pred CCCCCccCCCeEE-cCeeee-ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccc
Q 009817 387 FYTSPRFLPPTKI-DNCRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP 464 (524)
Q Consensus 387 i~~~~~i~p~~~i-~~~~i~-~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~ 464 (524)
|.+++.+.|.+.| ++++|. ++.|+++++|+ +..+.-.||.+|.|.+||.|+ .+. .-...+|+.
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlR-gD~~~I~IG~~tNIQDg~ViH------~~~-----~~p~~IG~~--- 78 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLR-GDVEPIRIGARTNIQDGVVIH------ADP-----GYPVTIGDD--- 78 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEE-ccCCceEECCCceecCCeEEe------cCC-----CCCeEECCC---
Confidence 4444444454443 334442 35555555555 222445566666555555554 311 123455666
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.|+.|.|++||.||.|++|.|+
T Consensus 79 vtIGH~aivHGc~Ig~~~lIGmgA~vldg 107 (176)
T COG0663 79 VTIGHGAVVHGCTIGDNVLIGMGATVLDG 107 (176)
T ss_pred cEEcCccEEEEeEECCCcEEecCceEeCC
Confidence 99999999999999999999999999997
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=110.69 Aligned_cols=87 Identities=17% Similarity=0.359 Sum_probs=61.3
Q ss_pred CCCccCCCeEEcCeeeeceEECCCCEEC-ceEEec----eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCcc
Q 009817 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (524)
Q Consensus 389 ~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~----siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~ 463 (524)
+++.+.|.+.|. .++.||++|.|+ ++.|.. ++||.+|.|+++|.|+..... .++++++
T Consensus 15 ~~a~I~~~a~I~----g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~-----------~siIg~~-- 77 (196)
T PRK13627 15 PTAFVHPSAVLI----GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDT-----------DTIVGEN-- 77 (196)
T ss_pred CCeEECCCCEEE----CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCC-----------CCEECCC--
Confidence 344444444443 256666666666 455543 588999999999988653211 2445555
Q ss_pred ceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.+++|+|+++|.||.+++|.++
T Consensus 78 -~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g 106 (196)
T PRK13627 78 -GHIGHGAILHGCVIGRDALVGMNSVIMDG 106 (196)
T ss_pred -CEECCCcEEeeEEECCCCEECcCCccCCC
Confidence 89999999999999999999999999876
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.3e-10 Score=116.06 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=84.9
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|+.+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|++....+.+..+ +.+
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~-----~~~----- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDL-----FPG----- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhh-----ccC-----
Confidence 567899999999999995 379999999999 999999999975 5899999776544332211 111
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHHHHHcCCcE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDADI 244 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad~ 244 (524)
+.++...... ..|...+++.++..++ .+.++++.||+ +...+ +..+++.+.+.++++
T Consensus 67 ---~~~i~d~~~g-------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 67 ---LPVYPDILPG-------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred ---CcEEecCCCC-------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 2223222211 1488899998887653 36799999998 44544 677777665555543
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=115.68 Aligned_cols=126 Identities=12% Similarity=0.282 Sum_probs=74.8
Q ss_pred CCCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEeceEEeCCccccchhhHHh
Q 009817 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS 456 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~ 456 (524)
+....+...+.+.|.+++.+ ++.||++|.|. +|.|. +++||++|.|+++|.|..+..- +. .....+
T Consensus 50 ~~~p~I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~----~~-g~~~~s 120 (269)
T PLN02296 50 DKAPVVDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTN----LS-GKVLPT 120 (269)
T ss_pred CCCCccCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCc----cc-CCCCCc
Confidence 33344555666666666543 45555555555 34443 3589999999999988631100 00 000123
Q ss_pred hhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+++++ +.||+++.|++|+|+++|.||.+++|.++. ++.++..|..| .+|.++..|+++++
T Consensus 121 iIG~~---v~IG~~avI~g~~Igd~v~IG~ga~I~~gv---~Ig~~a~Igag-SvV~~~~~I~~~~~ 180 (269)
T PLN02296 121 IIGDN---VTIGHSAVLHGCTVEDEAFVGMGATLLDGV---VVEKHAMVAAG-ALVRQNTRIPSGEV 180 (269)
T ss_pred EeCCC---CEECCCceecCCEECCCcEECCCcEECCCe---EECCCCEECCC-CEEecCCEeCCCeE
Confidence 34444 899999999999999999999999998762 33333444433 34444444555443
|
|
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=93.85 Aligned_cols=77 Identities=27% Similarity=0.571 Sum_probs=57.3
Q ss_pred ECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCC
Q 009817 409 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (524)
Q Consensus 409 Ig~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (524)
|+++|.|+ ++.+.+++||++|+|++++.|++++++++ +.|++++.|.+|+|++++.|+.+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 56666665 46666678888888888888888887777 78888888888888888888888
Q ss_pred cEEeCCCCCCCCCCceEEecCcEEEcCCCEeCC
Q 009817 488 VVIVNKDEADRPELGFYIRSGITIIMEKATIED 520 (524)
Q Consensus 488 ~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~ 520 (524)
+.+.+. .++++++.|+|
T Consensus 63 ~~i~~~----------------~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNL----------------CIIGDDVVVED 79 (79)
T ss_pred CEEcCC----------------eEECCCeEECc
Confidence 877764 26677776654
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=110.05 Aligned_cols=98 Identities=15% Similarity=0.321 Sum_probs=63.7
Q ss_pred CCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCccc
Q 009817 390 SPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVP 464 (524)
Q Consensus 390 ~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~~~ 464 (524)
.+.+++++.|+ .+.|. ++.||++|+|+ ++.|.++.||++|+|++++.|+++++..+..++....+ .+.++++
T Consensus 15 ~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~--- 91 (193)
T cd03353 15 DVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG--- 91 (193)
T ss_pred CeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC---
Confidence 34444555553 24443 68999999998 68899999999999999999999888887444443322 2344444
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEE
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i 490 (524)
+.|++++.+++++|+++++|+..+.+
T Consensus 92 ~~Ig~~~~i~~s~ig~~~~i~~~~~i 117 (193)
T cd03353 92 VHIGNFVEIKKSTIGEGSKANHLSYL 117 (193)
T ss_pred CEECCcEEEecceEcCCCEeccccee
Confidence 45555555555555555544444333
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-09 Score=103.29 Aligned_cols=215 Identities=14% Similarity=0.152 Sum_probs=122.4
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+.+||||||.|+||. ...||++++++|+ |+|.|.++.+.+. .+++|+|++........+.+... .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------~ 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------K 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----------T
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----------C
Confidence 468999999999997 3589999999999 9999999999985 79999999977653332222211 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCc--eecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--HLYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD--~l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+.++..-. .-.++++.++..+.+ ..+.++|=.|= .+...-+.++++...+ +.+..+...++
T Consensus 67 ~v~iv~GG~-----------tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~ 130 (221)
T PF01128_consen 67 KVKIVEGGA-----------TRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPV 130 (221)
T ss_dssp TEEEEE--S-----------SHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-
T ss_pred CEEEecCCh-----------hHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEec
Confidence 255554221 345789999888863 22344443331 1222236777777655 23456666666
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d 331 (524)
.+ .+..++++|.|..... ... .+.-=.=-.|+.+.|.+..+.......+
T Consensus 131 ~D------Tik~v~~~~~v~~tld---R~~----------------------l~~~QTPQ~F~~~~l~~a~~~a~~~~~~ 179 (221)
T PF01128_consen 131 TD------TIKRVDDDGFVTETLD---RSK----------------------LWAVQTPQAFRFELLLEAYEKADEEGFE 179 (221)
T ss_dssp SS------EEEEESTTSBEEEEET---GGG----------------------EEEEEEEEEEEHHHHHHHHHTHHHHTHH
T ss_pred cc------cEEEEecCCcccccCC---HHH----------------------eeeecCCCeecHHHHHHHHHHHHhcCCC
Confidence 54 3456666777665432 111 1111123568888887766544221112
Q ss_pred hhhhhHHhhhh--cCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 332 FGSEIIPAAIM--EHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 332 ~~~dii~~li~--~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
+..|. .++. ..++....-+..-+-|.||+|+..|+..+.
T Consensus 180 ~tDda--sl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~ 220 (221)
T PF01128_consen 180 FTDDA--SLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLK 220 (221)
T ss_dssp HSSHH--HHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHH
T ss_pred ccCHH--HHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhc
Confidence 22221 1222 345555544445677999999999987653
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=115.90 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=34.6
Q ss_pred eeEECCCCEECCCcEEeCCC-CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 475 NCIIDKNVKIGKDVVIVNKD-EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~~-e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+.+|++++.||.|+.|..+. ....++++..|. +.+.|++|+.|+.+|.|
T Consensus 202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kId-N~vqIaHnv~IG~~~~I 251 (338)
T COG1044 202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKID-NLVQIGHNVRIGEHCII 251 (338)
T ss_pred eEEECCceEEcccceeccccccCceecCCcEEc-ceeEEccccEECCCcEE
Confidence 67788888888888888776 445555556554 34777888887777764
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=114.25 Aligned_cols=143 Identities=14% Similarity=0.184 Sum_probs=76.7
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEec-------------eEE
Q 009817 380 FYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD-------------TVM 442 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~-------------s~i 442 (524)
.++|.+.+.+++.++++++|+. |.|. ++.||++|.|+ ++.|. +++||++|+|+++|.|.. ..|
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I 83 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI 83 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence 3455555555565655555543 4442 46777777776 45554 467777777777777753 334
Q ss_pred eCCccccchhhHH--hhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EE
Q 009817 443 LGADYYQTESEIA--SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TI 511 (524)
Q Consensus 443 ~~~~~~~~~~~~~--~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~v 511 (524)
..+..++..+.+. +....+ .+.||+++.|. ++.|+.+|.||.++++.+.. +...+.++.+|..+. +.
T Consensus 84 G~~~~I~e~~~I~~~~~~~~~--~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~ 161 (262)
T PRK05289 84 GDNNTIREFVTINRGTVQGGG--VTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVR 161 (262)
T ss_pred CCCCEECCCeEEecccccCCC--eeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCE
Confidence 4443333333321 101111 14566665552 45555555555555555543 334556666666553 35
Q ss_pred EcCCCEeCCCccc
Q 009817 512 IMEKATIEDGMVI 524 (524)
Q Consensus 512 v~~~~~i~~gtvI 524 (524)
||+++.|++|++|
T Consensus 162 Ig~~~~Ig~gs~V 174 (262)
T PRK05289 162 IGAHAMVGGMSGV 174 (262)
T ss_pred ECCCCEEeeecce
Confidence 6777777776654
|
|
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-10 Score=105.96 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=86.0
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeE
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V 175 (524)
.+||||||.|+||+ .+|.|++++|+ |||+|+++.+.++++++|+|++++..+.+ ..+.+.... .. .+
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~~~---~~---~~ 68 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYLLA---DE---RI 68 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhhhc---CC---Ce
Confidence 58999999999997 37999999999 99999999998899999999998765432 112111111 11 14
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDA 242 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~a 242 (524)
.++... +|..|.+.+|+.++..+.+ ...+.++++.||+ +... .+..+++.......
T Consensus 69 ~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 69 MLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred EEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 444322 2335889999999877631 2357899999999 3343 46777776544333
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=114.03 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=30.7
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.||+++.|. ++.|+.++.||+++.|.+.. ....+.++..|..+. +.||++++|+++++|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEE
Confidence 5566666663 45555555555555555443 223444444444432 356666666666553
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=113.17 Aligned_cols=114 Identities=9% Similarity=0.145 Sum_probs=78.1
Q ss_pred CCCCCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCC
Q 009817 88 RRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (524)
Q Consensus 88 ~~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~ 167 (524)
.++++..+.+||||||+|+||+ .+|+|+|++|+ |||+|+++.+.. ..++|+|+++...... +.
T Consensus 168 ~~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~~---~~------- 230 (369)
T PRK14490 168 GRAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAEQ---YR------- 230 (369)
T ss_pred cccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhhH---Hh-------
Confidence 3444566789999999999996 48999999999 999999999976 4788888776542211 11
Q ss_pred cccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHH
Q 009817 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQS 236 (524)
Q Consensus 168 ~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~ 236 (524)
.++ +.++..... .+|...++..++.... .+.++++.||+ +...+ +..+++.
T Consensus 231 -~~~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 231 -SFG---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred -hcC---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 112 344432221 1477778877765432 46899999999 33444 5666554
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-10 Score=91.10 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=62.5
Q ss_pred ECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCC
Q 009817 409 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 487 (524)
Q Consensus 409 Ig~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~ 487 (524)
||++|.|+ ++.|.+++|+.+|.|+++++|.+++++++ +.|++++.|.+|+|+++++|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 45666666 45566789999999999999999888887 89999999999999999999999
Q ss_pred cEEeCCCCCCCCCCceEEecCcEEEcCCCEeCC
Q 009817 488 VVIVNKDEADRPELGFYIRSGITIIMEKATIED 520 (524)
Q Consensus 488 ~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~ 520 (524)
+.|... .+|++++.|++
T Consensus 63 ~~i~~~----------------~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPG----------------SLISFGVVIGD 79 (79)
T ss_pred CEECCC----------------CEEeCCcEeCc
Confidence 888765 36777777664
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-10 Score=112.17 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=61.6
Q ss_pred CCCCCCCccCCCeEEcC-eeee-ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCc
Q 009817 385 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~ 462 (524)
..+...+.+.|++.+.+ +.|. ++.|++|++|++ .....+||.+|.|+++|.|+...-. .+...-.+.++++
T Consensus 60 p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirg-d~~~I~IG~~t~Ig~~~vI~~~~~~-----~~~i~~~tvIG~~- 132 (246)
T PLN02472 60 PKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRG-DLNKITVGFCSNVQERCVLHAAWNS-----PTGLPAETLIDRY- 132 (246)
T ss_pred CccCCCCEECCCCEEecCEEECCCCEEcCCCEEec-CCcceEECCCCEECCCCEEeecCcc-----ccCCCCCcEECCC-
Confidence 34555566666666543 3332 345555555441 1123689999999999998521100 0000001233344
Q ss_pred cceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 463 VPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 463 ~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.|++|+|+++|.||.+++|.++
T Consensus 133 --v~IG~~s~L~~~~Igd~v~IG~~svI~~g 161 (246)
T PLN02472 133 --VTIGAYSLLRSCTIEPECIIGQHSILMEG 161 (246)
T ss_pred --CEECCCcEECCeEEcCCCEECCCCEECCC
Confidence 89999999999999999999999999876
|
|
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-09 Score=103.12 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=78.7
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCc--hhHHHHHHHhhhcCCcccCCC
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~--~~l~~hl~~~y~~~~~~~~~~ 173 (524)
|||||||.++||. +|+|+|++|+ |||+|+++.+.+++ +++|+|+++... +.+.+++. . ++
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~-~-------~~-- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK-K-------LG-- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH-H-------cC--
Confidence 7999999999993 4999999999 99999999999987 899999998765 44444432 1 12
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cc-cCHHHHHHHHHHcCCcEE
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADIT 245 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~-~dl~~ll~~h~~~~ad~t 245 (524)
++++..... + .+..+...++. ...+.++++.||+= .. ..+.++++.+...+.+++
T Consensus 65 -v~~v~~~~~----------~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 -VKVFRGSEE----------D---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred -CeEEECCch----------h---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 344432211 1 12222222221 23478999999993 34 457899998877666554
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=101.47 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=68.5
Q ss_pred ceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECC
Q 009817 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~ 480 (524)
++.||++|+|. ++.+. .++||++|.|+++|.|.+++.+... ......++++ +.|+.++.|.+++||+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~-----~~~~v~IG~~---~~i~~~~~i~~~~IGd 88 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA-----EPKPMIIGSN---NVFEVGCKCEALKIGN 88 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC-----CCCCeEECCC---CEECCCcEEEeeEECC
Confidence 56677777776 45553 3589999999999999877654220 0001233334 5566677777888888
Q ss_pred CCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 481 NVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 481 ~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+|.||.+++|... ..+.++..|+.| ++|.+++.|++++++
T Consensus 89 ~~~Ig~~a~I~~g---v~Ig~~~~Igag-svV~~~~~i~~~~vi 128 (164)
T cd04646 89 NNVFESKSFVGKN---VIITDGCIIGAG-CKLPSSEILPENTVI 128 (164)
T ss_pred CCEEeCCCEECCC---CEECCCCEEeCC-eEECCCcEECCCeEE
Confidence 8888888888765 244455555555 556666666666553
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-10 Score=95.91 Aligned_cols=75 Identities=28% Similarity=0.477 Sum_probs=62.4
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (524)
+.|+++|.| ++|+||.+|+|+ ++.|++++++.+ +.|++++.|.+|+|++++.||.
T Consensus 2 ~~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~ 56 (104)
T cd04651 2 PYIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGR 56 (104)
T ss_pred ceecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECC
Confidence 455555555 468999999999 999999999998 9999999999999999999999
Q ss_pred CcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 487 DVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 487 ~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
++.+.+. +|++++.|+++++
T Consensus 57 ~~~i~~s-----------------iig~~~~Ig~~~~ 76 (104)
T cd04651 57 NAVIRRA-----------------IIDKNVVIPDGVV 76 (104)
T ss_pred CCEEEeE-----------------EECCCCEECCCCE
Confidence 9999764 5566666666554
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=109.47 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=69.6
Q ss_pred cCCCCCCCCCCccCCCeEEcC-eee-eceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEec------------eE-Ee
Q 009817 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD------------TV-ML 443 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~------------s~-i~ 443 (524)
++|.+.+.+++.++.+++|+. |.| .++.||++|.|+ ++.|. ++.||.+++|++++.|.. .+ |.
T Consensus 2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG 81 (255)
T PRK12461 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG 81 (255)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence 344455555555555555542 333 246666666666 44443 455666666665555542 11 22
Q ss_pred CCccccchhhH--HhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EEE
Q 009817 444 GADYYQTESEI--ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TII 512 (524)
Q Consensus 444 ~~~~~~~~~~~--~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~vv 512 (524)
.++.+...+.+ .+..+.. +.||+++.|. ++.|+++|.||++++|.+.. ...++.+..+|..+. +.|
T Consensus 82 ~~~~I~e~vtI~~gt~~g~~---t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~I 158 (255)
T PRK12461 82 DRNVIREGVTIHRGTKGGGV---TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRI 158 (255)
T ss_pred CceEECCccEEecCcccCCc---EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEE
Confidence 22222222211 1111111 6666666663 56777777777777777664 223444444544442 245
Q ss_pred cCCCEeCCCcc
Q 009817 513 MEKATIEDGMV 523 (524)
Q Consensus 513 ~~~~~i~~gtv 523 (524)
|+++.|++|++
T Consensus 159 G~~a~Vg~gs~ 169 (255)
T PRK12461 159 GALAMMAGGSR 169 (255)
T ss_pred CCCcEECCCce
Confidence 55555555554
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=106.00 Aligned_cols=59 Identities=12% Similarity=0.301 Sum_probs=41.7
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEec
Q 009817 380 FYDPKTPFYTSPRFLPPTKIDN-CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD 439 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~~-~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~ 439 (524)
.+++.+.+. .+.+++++.|+. |.|.+++||++|.|+ ++.+.+++||.+|.|++++.|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 344555553 356667777753 777778888888888 57777888888888888887754
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-10 Score=122.99 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=47.6
Q ss_pred eeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEEC
Q 009817 403 RIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (524)
Q Consensus 403 ~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~ 479 (524)
.|.+++||++|.|+ ++.+. +++||+++.|+.+++|++++++.+...+....+ . .+.||+||.|. +++|+
T Consensus 319 ~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~-----~---~~~ig~~~~ig~~~~i~ 390 (481)
T PRK14358 319 VLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYL-----G---DVTIGAETNVGAGTIVA 390 (481)
T ss_pred eecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEE-----C---CeEEcCCceEcCCEEEe
Confidence 33456666666666 45553 577777777777777777777666544443222 1 14445544443 34343
Q ss_pred -------CCCEECCCcEEeCCC
Q 009817 480 -------KNVKIGKDVVIVNKD 494 (524)
Q Consensus 480 -------~~~~Ig~~~~i~~~~ 494 (524)
.++.||+++.|....
T Consensus 391 ~~~~~~~~~~~Ig~~~~ig~~~ 412 (481)
T PRK14358 391 NFDGVNKHQSKVGAGVFIGSNT 412 (481)
T ss_pred CCCCccCCCCEECCCeEEcCCC
Confidence 245666666666654
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-10 Score=121.21 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=34.8
Q ss_pred eeeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccch
Q 009817 402 CRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (524)
Q Consensus 402 ~~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~ 451 (524)
+.+.+++|+++|.|+ ++.|. +++||++|+|+++++++++.+..+..++..
T Consensus 309 ~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~ 360 (451)
T TIGR01173 309 SVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHL 360 (451)
T ss_pred cEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecce
Confidence 455567777777777 45665 578888888888888887777766554443
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-09 Score=107.08 Aligned_cols=212 Identities=19% Similarity=0.276 Sum_probs=129.4
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhcC-----------CCeEEEEec-cCchhHHH
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINSG-----------INKIFVLTQ-FNSASLNR 157 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~sG-----------i~~I~Ivt~-~~~~~l~~ 157 (524)
.+|.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ .-.++|+|+ +..+.+.+
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 4688999999999999 677899999998 68 99999999998742 124568888 67778877
Q ss_pred HHHH-hhhcCCcccCCCeEEEEccccCC-----C-------CCCCCcccCcHHHHHHHHH--HHHhhhcCCCCeEEEEcC
Q 009817 158 HIAR-TYFGNGTNFGDGFVEVLAATQTP-----G-------ESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCG 222 (524)
Q Consensus 158 hl~~-~y~~~~~~~~~~~V~vl~~~q~~-----~-------e~~~~~~~Gta~al~~a~~--~i~~~~~~~~e~~Lvl~g 222 (524)
++.+ .||+-. ...|.++....-| + ..-.-.+-|.++....... .++++...+.+++.+.+.
T Consensus 90 ~~~~~~~fGl~----~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~v 165 (323)
T cd04193 90 FFKENNYFGLD----PEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSV 165 (323)
T ss_pred HHHhCCcCCCC----CceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEec
Confidence 7754 233321 1122222110000 0 0001123588776654432 355555578899999999
Q ss_pred cee-cccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceE-EEECCCCcEEEEEecCCcccccccccccccccCCccccc
Q 009817 223 DHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300 (524)
Q Consensus 223 D~l-~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~ 300 (524)
|.+ ...-=-.++-.+.++++++++-+.+...+. +.-|. +..|..-.+.++.|-|....... ..+.. +
T Consensus 166 DN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~-~~~g~-l-------- 234 (323)
T cd04193 166 DNILVKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKR-DADGE-L-------- 234 (323)
T ss_pred CcccccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhcc-CcCCc-E--------
Confidence 995 433335667778888999888666654322 23444 44454455667776654332110 00100 0
Q ss_pred cCCcceeeeEEEEeHHHHHHHHHh
Q 009817 301 KCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 301 ~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
..+..++.+.+|+.++|.++++.
T Consensus 235 -~f~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 235 -QYNAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred -ecccchHhhheeCHHHHHHHHhh
Confidence 12344566788999988877653
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=89.22 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=66.5
Q ss_pred cCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 393 i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
+++.+.|+ ++.|.+++|+++|.|+ ++.+++|+|+++++|++++.|.+++++.+ +.|+.+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 45667774 5777789999999998 79999999999999999999999999988 899999
Q ss_pred cEEee-eEECCCCEECC
Q 009817 471 TKIRN-CIIDKNVKIGK 486 (524)
Q Consensus 471 ~~I~~-~iI~~~~~Ig~ 486 (524)
+.|.+ ++|+++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99988 99999988874
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-08 Score=97.97 Aligned_cols=222 Identities=17% Similarity=0.170 Sum_probs=131.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchh-HHHHHHHhhhcCCccc
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNF 170 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~-l~~hl~~~y~~~~~~~ 170 (524)
..+.+||||||.|+||.. ..||++++++|+ |||+|.++.+..+ .|++|+|+++..... +.++.. + .
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------~ 70 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------S 70 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------c
Confidence 457899999999999975 699999999999 9999999999987 689999999874322 222221 1 1
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCc--eecccCHHHHHHHHHHcCCcEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--HLYRMDYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD--~l~~~dl~~ll~~h~~~~ad~tl~~ 248 (524)
....++++..-. .-.++++.++..+.. ...+.|||-.+= .+....+.++++...+ ....+.+
T Consensus 71 ~~~~v~~v~GG~-----------~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~~--~~aai~a 134 (230)
T COG1211 71 ADKRVEVVKGGA-----------TRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELADK--YGAAILA 134 (230)
T ss_pred cCCeEEEecCCc-----------cHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhcc--CCcEEEE
Confidence 123355554221 456889999888862 123445544441 2333446777744433 3345566
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.|+.+ .+...+++|.|.+.... ..+-. .-.| -.|+.+.|.+.++.....
T Consensus 135 lpv~D------Tik~~~~~~~i~~t~~R---~~l~~--------~QTP--------------Q~F~~~~L~~a~~~a~~~ 183 (230)
T COG1211 135 LPVTD------TLKRVDADGNIVETVDR---SGLWA--------AQTP--------------QAFRLELLKQALARAFAE 183 (230)
T ss_pred eeccC------cEEEecCCCCeeeccCh---hhhhh--------hhCC--------------ccccHHHHHHHHHHHHhc
Confidence 66654 23444456666643321 11100 0011 346677776666544333
Q ss_pred CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
..++..|.--......++....=+-+-+-|.||+||.-|+..+..
T Consensus 184 ~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 184 GREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred CCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 333322211111113455554444457889999999999887653
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=109.02 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=26.2
Q ss_pred eEeCCCcEE-------eeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 465 IGVGRNTKI-------RNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 465 ~~Ig~~~~I-------~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.||+++.| ++|+||+++.|+.++.|... ....++..|..+. +.|+++++|+++++|
T Consensus 102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~---~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH---VEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred EEECCCCEECCCCEEccCCEECCCCEECCCCEECCC---cEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 455555555 33444444444444333322 3334444444442 355666666665543
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-10 Score=116.35 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=126.4
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHh--------cCCCeEEEEeccCchhHHHHHHHhh
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCIN--------SGINKIFVLTQFNSASLNRHIARTY 163 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~--------sGi~~I~Ivt~~~~~~l~~hl~~~y 163 (524)
+.+||||||.||||+ ...||+|+||+ |+ |+|++.++++.+ .+|..+++...+..+.+.+++.+.-
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 358999999999994 67999999999 99 999999999986 3577777777778888888885321
Q ss_pred hcCCcccCCCeEEEE-ccccCC---------CCCCC-Cc-ccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceec-cc
Q 009817 164 FGNGTNFGDGFVEVL-AATQTP---------GESGK-NW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RM 228 (524)
Q Consensus 164 ~~~~~~~~~~~V~vl-~~~q~~---------~e~~~-~~-~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~-~~ 228 (524)
+. . ..+.++ +...+. .+..+ .| +-|.+|.+.... ..++++...+.+++.+.+.|.+. ..
T Consensus 77 ~~----~--~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v 150 (266)
T cd04180 77 QK----N--SYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKV 150 (266)
T ss_pred CC----C--CceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccc
Confidence 11 1 112211 110000 00000 22 357777665442 34555555788999999999855 44
Q ss_pred -CHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECCCCc--EEEEEecCCcccccc---ccc-ccccccCCcccccc
Q 009817 229 -DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKA---MQV-DTSLLGFSPQEARK 301 (524)
Q Consensus 229 -dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~~g~--V~~~~EKp~~~~~~~---~~v-~t~~~~l~~~~~~~ 301 (524)
|. .++-.+...++++..-+.+..... +.-|.+...++|+ +.++.|-|....... ..+ +.+. .
T Consensus 151 ~DP-~~lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~---------~ 219 (266)
T cd04180 151 ADP-LFIGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDD---------A 219 (266)
T ss_pred cCH-HHHHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCc---------e
Confidence 43 356667777888777665544322 2345544322244 566666543221100 000 1111 1
Q ss_pred CCcceeeeEEEEeHHHHHHHHH
Q 009817 302 CPYVASMGVYVFKKDVLFKLLR 323 (524)
Q Consensus 302 ~~~l~~~GIYvf~~~vL~~ll~ 323 (524)
.....++....|+-+.+.++++
T Consensus 220 ~~~~~n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 220 PFFLFNTNNLINFLVEFKDRVD 241 (266)
T ss_pred eeccceEEEEEEEHHHHHHHHH
Confidence 3467799999999999887765
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=101.18 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=79.6
Q ss_pred ccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeC
Q 009817 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (524)
Q Consensus 392 ~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig 468 (524)
.+++++.|+ ++.|. +++|+++|.|+ ++.|.+|+||+++.|+.++.+.++++..+ +.|+
T Consensus 37 ~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~-------------------~~I~ 97 (163)
T cd05636 37 IIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN-------------------VNLG 97 (163)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC-------------------CEEC
Confidence 333444442 35555 58999999999 68999999999999999999999998888 6777
Q ss_pred CCcEEe-------------------------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 469 RNTKIR-------------------------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 469 ~~~~I~-------------------------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+++.+. +++|++++.||.++.|..+ +.|++++.|++|++
T Consensus 98 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g----------------~~ig~~~~i~agsv 161 (163)
T cd05636 98 AGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG----------------VKIGPGSWVYPGCV 161 (163)
T ss_pred CCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC----------------cEECCCCEECCCcE
Confidence 777663 5889999999999888877 59999999999987
Q ss_pred c
Q 009817 524 I 524 (524)
Q Consensus 524 I 524 (524)
|
T Consensus 162 V 162 (163)
T cd05636 162 V 162 (163)
T ss_pred e
Confidence 5
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.8e-10 Score=119.07 Aligned_cols=97 Identities=16% Similarity=0.305 Sum_probs=65.6
Q ss_pred CccCCCeEEc-Ceee-eceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCccce
Q 009817 391 PRFLPPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPI 465 (524)
Q Consensus 391 ~~i~p~~~i~-~~~i-~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~~~~ 465 (524)
+.+.+++.|. .+.+ .++.||+||.|+ ++.|++|+||++|+|+++|.|.++++..+..++.++.+ .+.++++ +
T Consensus 270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~---~ 346 (456)
T PRK14356 270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEG---A 346 (456)
T ss_pred cEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCC---C
Confidence 3444444443 2444 258899999998 78899999999999999999999998888655555544 3455555 5
Q ss_pred EeCCCcEEeeeEECCCCEECCCcEE
Q 009817 466 GVGRNTKIRNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 466 ~Ig~~~~I~~~iI~~~~~Ig~~~~i 490 (524)
.||+++.|++++|+++++|+.++.+
T Consensus 347 ~ig~~~~i~~~~i~~~~~i~~~~~i 371 (456)
T PRK14356 347 RVGNFVEMKKAVLGKGAKANHLTYL 371 (456)
T ss_pred EecCCceeeeeEecCCcEecccccc
Confidence 5666666666666665555444443
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=98.32 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=50.9
Q ss_pred ceEECCCCEEC-ceEEec----eEEcCCcEECCCCEEec-----eEEeCCccccchhhHHhhhcCCccceEeCCCcEEee
Q 009817 406 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKD-----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~~----siIg~~~~Ig~~~~I~~-----s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~ 475 (524)
++.||++|.|+ ++.|.. .+||+++.|+++|.|.. ++++.. +.|++++.|.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 78 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY-------------------VTIGHNAVVHG 78 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC-------------------CEECCCcEEEC
Confidence 46666666666 455544 48888888888888875 344444 78888888888
Q ss_pred eEECCCCEECCCcEEeCC
Q 009817 476 CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (524)
++|++++.||.++.+.+.
T Consensus 79 ~~Ig~~~~Ig~~~~i~~~ 96 (154)
T cd04650 79 AKVGNYVIVGMGAILLNG 96 (154)
T ss_pred cEECCCCEEcCCCEEeCC
Confidence 888888888888888764
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-10 Score=120.17 Aligned_cols=91 Identities=12% Similarity=0.297 Sum_probs=81.8
Q ss_pred CCCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCC
Q 009817 384 KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 461 (524)
Q Consensus 384 ~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g 461 (524)
..-+..++.|+.+|+|+ ++.|.||+||.||.|+ ++.|++|.||.+|+||.||+|++++++++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 34466677888888886 6899999999999999 89999999999999999999999999999
Q ss_pred ccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 462 KVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 462 ~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.|++++.+ ..|||+-++.+|++-++...
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 899999999 57999999999999888766
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=87.77 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=49.3
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (524)
+.|++++.|++ +++||++|+|+++++|++++++++ +.|++++.|.+|++++++.||+
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 34445555542 478888888888888888888887 7888888888888888888888
Q ss_pred CcEEeCC
Q 009817 487 DVVIVNK 493 (524)
Q Consensus 487 ~~~i~~~ 493 (524)
++.+.+.
T Consensus 63 ~~~~~~~ 69 (80)
T cd05824 63 WTRLENV 69 (80)
T ss_pred CcEEecC
Confidence 8888764
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=113.09 Aligned_cols=109 Identities=23% Similarity=0.378 Sum_probs=82.8
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH-HhhhcCCccceEeCCCcEEe-eeEECCCCE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~ 483 (524)
|++|.+|++|++ ++.||++|.||++|+|+|+.|-++..+..+..+ .+.++++ +.||..+++| ++.++.+++
T Consensus 274 DvvI~p~v~l~G----~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---~~VGPfA~LRPg~~L~~~~h 346 (460)
T COG1207 274 DVVIEPNVILEG----NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---ATVGPFARLRPGAVLGADVH 346 (460)
T ss_pred ceEEecCcEEee----eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC---cccCCccccCCcCcccCCCe
Confidence 566666666653 477777777777777777777777666664433 5667777 8888888887 788999999
Q ss_pred ECCCcEEeCCC--CCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 484 IGKDVVIVNKD--EADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 484 Ig~~~~i~~~~--e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
||..|.+.+.. +.....+=.||++- .||+++.|++||+
T Consensus 347 IGNFVEvK~a~ig~gsKa~HLtYlGDA--~iG~~~NiGAGtI 386 (460)
T COG1207 347 IGNFVEVKKATIGKGSKAGHLTYLGDA--EIGENVNIGAGTI 386 (460)
T ss_pred EeeeEEEecccccCCccccceeeeccc--eecCCceeccceE
Confidence 99999888887 56777777888875 8888888888876
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8e-10 Score=119.50 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=64.7
Q ss_pred eeeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEE
Q 009817 402 CRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCII 478 (524)
Q Consensus 402 ~~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI 478 (524)
+.+.+++|+++|.|+ ++.|. +++||.++.||++++|+++.++.+..++..+.+ + . +.||++|.|+ ++++
T Consensus 313 ~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~----g-~---~~ig~~~~ig~~~~~ 384 (456)
T PRK09451 313 SVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL----G-D---AEIGDNVNIGAGTIT 384 (456)
T ss_pred EEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc----c-c---cEECCCCEEcCCeEE
Confidence 555567777777777 45554 677788888888888877777777666554433 1 1 4455555553 2333
Q ss_pred CC-------CCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeC
Q 009817 479 DK-------NVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIE 519 (524)
Q Consensus 479 ~~-------~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~ 519 (524)
.. +++||+++.|.... ....|..|..| ++|+.++.|-
T Consensus 385 ~~~~~~~~~~~~Igd~~~ig~~~---~i~~~~~ig~~-~~i~~gs~v~ 428 (456)
T PRK09451 385 CNYDGANKFKTIIGDDVFVGSDT---QLVAPVTVGKG-ATIGAGTTVT 428 (456)
T ss_pred ecccCcccCCCEECCCcEECCCC---EEeCCcEECCC-CEECCCCEEc
Confidence 21 35566666665542 34566777776 6777777663
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=111.07 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=31.0
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecC-----cEEEcCCCEeCCCcc
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSG-----ITIIMEKATIEDGMV 523 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g-----~~vv~~~~~i~~gtv 523 (524)
+.||++++|. .+.|++|++||+++.|.+.. ...+..+...|..+ .+.||+++.|+++++
T Consensus 218 t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~ 285 (324)
T TIGR01853 218 TIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSG 285 (324)
T ss_pred ceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCE
Confidence 4455555553 35666666667776666653 22334444444322 135566666665554
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-08 Score=95.93 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=79.8
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
+.+|.+||||||+|+|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. |. .++
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~--------~~----~~g 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR--------YA----EFG 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh--------hh----ccC
Confidence 56789999999999999 57999999999 999999999988754 555555443221 21 122
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHHHHHcC
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRD 241 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ 241 (524)
++++..... ++ |...+++.++..+. .+.++++.||+ +...+ +..+.+...+.+
T Consensus 62 ---~~vv~D~~~-------~~-GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 ---LPVVPDELP-------GF-GPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ---CceeecCCC-------CC-CCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 455544332 22 88999999987764 58999999999 34444 455555554433
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-09 Score=105.08 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=7.6
Q ss_pred eEEcCCcEECCCCEEe
Q 009817 423 SIVGERSRLDYGVELK 438 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~ 438 (524)
++||++|.|+++|.|.
T Consensus 77 v~IG~~~~I~~~~~I~ 92 (254)
T TIGR01852 77 LIIGDNNTIREFVTIN 92 (254)
T ss_pred EEECCCCEECCCCEEC
Confidence 4444444444444443
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-09 Score=97.54 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=15.7
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEe
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIV 491 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~ 491 (524)
+.||.++.|.++.||+++.||.++.|.
T Consensus 89 ~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 89 CFIGFRSVVFNAKVGDNCVIGHNAVVD 115 (167)
T ss_pred CEECCCCEEECCEECCCCEEcCCCEEe
Confidence 555555555555555555555555554
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=115.83 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=47.0
Q ss_pred ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
++.||++|.|+ ++.|.+|+||++|+|. ++.+.+++++++..++....+ .+.++++ +.||+++.+++++||+++
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~---~~Ig~~~~i~~~~ig~~~ 348 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKS---VKIGNFVEIKKSTIGENT 348 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCC---cEecCceeeeccEEcCCc
Confidence 47777888887 5777778888888875 467777777777555554433 2455555 555555555555555544
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.2e-09 Score=95.10 Aligned_cols=69 Identities=22% Similarity=0.426 Sum_probs=47.3
Q ss_pred ceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEece-----EEeCCccccchhhHHhhhcCCccceEeCCCcEEee
Q 009817 406 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT-----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 475 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~~s-----~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~ 475 (524)
++.||++|.|+ ++.|. .++||++|.|+++|.|.++ +|+.+ +.|+.++.|.+
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 77 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN-------------------VTVGHGAVLHG 77 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC-------------------cEECCCcEEee
Confidence 45556666665 34443 3578888888888888764 44544 77788888877
Q ss_pred eEECCCCEECCCcEEeCC
Q 009817 476 CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (524)
++|++++.||.++.+...
T Consensus 78 ~~Ig~~~~Ig~~~~v~~~ 95 (153)
T cd04645 78 CTIGDNCLIGMGAIILDG 95 (153)
T ss_pred eEECCCCEECCCCEEcCC
Confidence 888888888877777643
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-09 Score=92.35 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=27.2
Q ss_pred ceEECCCCEEC-ceEE-eceEEcCCcEECCCCEEeceEEeCC
Q 009817 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i-~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+++||++|.|+ ++.+ .+++||++|.|++++.|.++.+.+.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~ 57 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS 57 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc
Confidence 57777777777 4555 3577777777777777776554443
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-09 Score=113.40 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=78.7
Q ss_pred CCCCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhH-Hhhh
Q 009817 383 PKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLL 458 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~ 458 (524)
+...|.+.+.++.++.|+ .+.|.+++||++|.|+ ++.|. +|+||.+|.||++++|.++.+..+..++....+ .+.+
T Consensus 279 ~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~i 358 (446)
T PRK14353 279 PNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATI 358 (446)
T ss_pred CCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEE
Confidence 344444455555556664 3667789999999999 67776 799999999999999998888877655544332 3456
Q ss_pred cCCccceEeCCCcEEe--------eeEECCCCEECCCcEEeCC
Q 009817 459 AEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 459 ~~g~~~~~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~~~ 493 (524)
+++ +.||.++.+. +++||+++.||.+++|...
T Consensus 359 g~~---~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~ 398 (446)
T PRK14353 359 GAG---ANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP 398 (446)
T ss_pred cCC---cEECCceeeeccccccCCCcEECCCcEECCCCEEeCC
Confidence 666 7777776651 5788888888888888765
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.9e-09 Score=104.37 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=12.2
Q ss_pred eEEcCCcEECCCCEEeceEEeCC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.||.+|.||++|+|...+++++
T Consensus 145 a~IG~~a~IG~nv~I~~gv~I~g 167 (272)
T PRK11830 145 ATVGSCAQIGKNVHLSGGVGIGG 167 (272)
T ss_pred cEECCCCEECCCcEECCCccCCC
Confidence 45555555555555554444443
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-09 Score=108.82 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=80.4
Q ss_pred CCCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCc
Q 009817 385 TPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~ 462 (524)
+-+..+..+++.|+|+ ++.|+.|+||.+|.|+ ++.|.+|+|-+++.||+||.|++|+|..+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 4456678889999996 6899999999999999 69999999999999999999999999998
Q ss_pred cceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 463 VPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 463 ~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
++||+++.++||+||++=++.+..+-.+-
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 89999999999999999999866555443
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.5e-09 Score=99.08 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=32.6
Q ss_pred cCCCCCCCCCCccCCCeEEcC-eee-eceEECCCCEEC-ceEEec-eEEcCCcEECCCCEE
Q 009817 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVEH-SIVGERSRLDYGVEL 437 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I 437 (524)
+++...+...+.++++++|.. +.| .++.||++|.|+ ++.|.+ ++||+++.|++++.|
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 344444555555555555543 555 357777777776 455543 566666666666655
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.7e-09 Score=103.88 Aligned_cols=103 Identities=13% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEE-eceEEcCCcEECCCCEEeceEEeCCcc----ccchhhHHh
Q 009817 385 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADY----YQTESEIAS 456 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i-~~siIg~~~~Ig~~~~I~~s~i~~~~~----~~~~~~~~~ 456 (524)
..|++++.+.|.++|++ +.|. .++|++++.|+ ++.| .+++|+.+++||++|.|....+++... |.. .....
T Consensus 3 ~~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g-~~~~v 81 (262)
T PRK05289 3 AKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKG-EPTRL 81 (262)
T ss_pred cccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccC-CCCeE
Confidence 45777788888887754 4443 24455555554 3333 244555555555555554333333210 000 01124
Q ss_pred hhcCCccceEeCCCcEEee--------eEECCCCEECCCcEEe
Q 009817 457 LLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIV 491 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~--------~iI~~~~~Ig~~~~i~ 491 (524)
.++++ +.|++++.|++ ++||+++.|+.++.|.
T Consensus 82 ~IG~~---~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~ 121 (262)
T PRK05289 82 VIGDN---NTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVA 121 (262)
T ss_pred EECCC---CEECCCeEEecccccCCCeeEECCceEECCCCEEC
Confidence 45555 55555555543 3566666666666655
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-09 Score=108.48 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=32.0
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EEEcCCCEeCCCcc
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TIIMEKATIEDGMV 523 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtv 523 (524)
+.||++++|. .+.|++|++||+++.|.... ...+.++...|..+. +.||+++.|+++++
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~ 293 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSG 293 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCe
Confidence 4555566664 35566666666666666553 334445555554442 24555666655554
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.3e-09 Score=102.52 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCCCCccCCCeEEcCeee-eceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeC
Q 009817 387 FYTSPRFLPPTKIDNCRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i-~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
+...+.+++++.|....| .++.||+||.|.. +++||.+|+||++|.|.....++
T Consensus 109 i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~Ig 163 (269)
T TIGR00965 109 VRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIG 163 (269)
T ss_pred ECCCcEECCCCEEeeeEEcCCcEECCCCEECC----CcEECCCCEECCCCEEcCCcccC
Confidence 333344444444432222 1345556665552 35677777777777775544443
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-08 Score=102.09 Aligned_cols=109 Identities=8% Similarity=0.039 Sum_probs=77.2
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
.+.+||||||+|+||+ .+|.|+|+.|+ ||++|+++.+.. .+++|+|+++... . ..+ . +.
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~-~~~~ViVv~~~~~---~----~~~-~----~~-- 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAK-YCEQVFLSARPSQ---W----QGT-P----LE-- 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHh-hCCEEEEEeCchH---h----hhc-c----cc--
Confidence 6789999999999996 58999999999 999999988865 4889988886421 1 111 0 00
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cccC-HHHHHHHH
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSH 237 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~~d-l~~ll~~h 237 (524)
.+.++.... +.+|...+|+.++.... .+.++++.||+- ...+ +..+++.+
T Consensus 219 ~v~~I~D~~--------~~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 NLPTLPDRG--------ESVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCeEEeCCC--------CCCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 133333222 23599999999987643 358899999994 4444 56666654
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=96.65 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=13.2
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.|+.++.|. +|+|+++|.||.++.|..
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 4444444442 345555555555554444
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=83.27 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=61.3
Q ss_pred CCCeEEc-Ceee-eceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 394 LPPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 394 ~p~~~i~-~~~i-~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
.|+++|+ ++.| .+++|+++|.|+ ++.|.+|+|+.+++|++++.|.+++++.+ +.|+++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~ 63 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRW 63 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCC
Confidence 3444552 3444 368999999997 78999999999999999999999999988 899999
Q ss_pred cEEee-eEECCCCEECC
Q 009817 471 TKIRN-CIIDKNVKIGK 486 (524)
Q Consensus 471 ~~I~~-~iI~~~~~Ig~ 486 (524)
+.+.+ ++|+++++||+
T Consensus 64 ~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 64 TRLENVTVLGDDVTIKD 80 (80)
T ss_pred cEEecCEEECCceEECC
Confidence 99987 88888888774
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=93.21 Aligned_cols=95 Identities=15% Similarity=0.292 Sum_probs=73.0
Q ss_pred ccCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEE-----eceEEcCCcEECCCCEEeceEEeCCccc
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY 448 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i-----~~siIg~~~~Ig~~~~I~~s~i~~~~~~ 448 (524)
++++.+.+.....+++++.|+ +|.|. ++.||++|.|+ +|.| .+|+||+++.|+.++.|.++.+...
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~--- 84 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN--- 84 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC---
Confidence 344555555556666666664 46664 37889999998 5777 5689999999999999998777766
Q ss_pred cchhhHHhhhcCCccceEeCCCcEEee-eEECCCCEECCCcEEeCC
Q 009817 449 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 449 ~~~~~~~~~~~~g~~~~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.|.+ ++|++++.||.++.+...
T Consensus 85 ----------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~ 114 (155)
T cd04745 85 ----------------ALVGMNAVVMDGAVIGEESIVGAMAFVKAG 114 (155)
T ss_pred ----------------CEECCCCEEeCCCEECCCCEECCCCEeCCC
Confidence 89999999864 889999999998888764
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=82.93 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=62.4
Q ss_pred cCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCC
Q 009817 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 470 (524)
Q Consensus 393 i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~ 470 (524)
++++++|+ ++.|.+++|+++|.|+ ++.|.+++|+++++|+++++|.+++++++ +.|+.+
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 45677775 4777789999999998 68899999999999999999999888888 888888
Q ss_pred cEEe-eeEECCCCEECC
Q 009817 471 TKIR-NCIIDKNVKIGK 486 (524)
Q Consensus 471 ~~I~-~~iI~~~~~Ig~ 486 (524)
+.|. +++|+++++||+
T Consensus 63 ~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPGSLISFGVVIGD 79 (79)
T ss_pred CEECCCCEEeCCcEeCc
Confidence 8775 577777777664
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=101.81 Aligned_cols=132 Identities=13% Similarity=0.106 Sum_probs=65.2
Q ss_pred CCCCCCCCCccCCCeEEcC-eee-eceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhh
Q 009817 383 PKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL 458 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~ 458 (524)
|.+.|.+++.++++++|+. +.| .++.||++|.|+ ++.|. ++.||++|+|++++.|...-- ...+..+ .-...+
T Consensus 4 ~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~--~~~~~g~-~~~v~I 80 (254)
T cd03351 4 PTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQ--DLKYKGE-PTRLEI 80 (254)
T ss_pred CCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCccc--ceeecCC-CceEEE
Confidence 4444555555555555542 333 256777777777 34443 366666666666666642000 0000000 001223
Q ss_pred cCCccceEeCCCcEEe--------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecC-----cEEEcCCCEeCCCcc
Q 009817 459 AEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSG-----ITIIMEKATIEDGMV 523 (524)
Q Consensus 459 ~~g~~~~~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g-----~~vv~~~~~i~~gtv 523 (524)
+++ +.|++++.|. .++||+|+.|+.++.|... ....++.+|..+ -++||+++.|+++++
T Consensus 81 G~~---~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~---~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~ 152 (254)
T cd03351 81 GDN---NTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHD---CVIGNNVILANNATLAGHVEIGDYAIIGGLSA 152 (254)
T ss_pred CCC---CEECCccEEeccccCCCCceEECCCCEECCCCEECCC---CEECCCcEECCCccccCCcEeCCCcEECCcce
Confidence 333 6777777775 3777788888877777532 223333344333 134555555554443
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.4e-09 Score=111.48 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=72.9
Q ss_pred ccCCCeEEcCeeeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhH-HhhhcCCccceEeC
Q 009817 392 RFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVG 468 (524)
Q Consensus 392 ~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~~g~~~~~Ig 468 (524)
.++.++.|..+.+.+++||++|.|+ ++.|. +++||++|+|+.+++|+++++..+...+....+ .+.++++ +.||
T Consensus 302 ~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~---~~ig 378 (458)
T PRK14354 302 TIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGEN---VNIG 378 (458)
T ss_pred EECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCc---eEEc
Confidence 3444555544555678888888888 57776 688888888888888888887777554444322 2233333 3333
Q ss_pred CCcEEee--eEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCC
Q 009817 469 RNTKIRN--CIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIED 520 (524)
Q Consensus 469 ~~~~I~~--~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~ 520 (524)
.++.+.+ ..-.-+++||+++.|.... ....|..|+.+ ++|+.++.|..
T Consensus 379 ~~~~~~~~~~~~~~~~~igd~~~ig~~s---~i~~~~~ig~~-~~v~~~~~v~~ 428 (458)
T PRK14354 379 CGTITVNYDGKNKFKTIIGDNAFIGCNS---NLVAPVTVGDN-AYIAAGSTITK 428 (458)
T ss_pred CceeecccccccccCCEECCCcEEccCC---EEeCCcEECCC-CEECCCCEECC
Confidence 3333311 0001135556666665542 34567788877 77777776643
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=97.35 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=29.6
Q ss_pred eeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 402 CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 402 ~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.|.++.||++|.|+ +|.|.+++||.+|.|+.++.|.++.|...
T Consensus 15 a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~ 59 (204)
T TIGR03308 15 AELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKF 59 (204)
T ss_pred cEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCC
Confidence 444566677777777 46666777777777777777766655555
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=100.58 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=33.7
Q ss_pred CCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeC
Q 009817 387 FYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 387 i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
|++++.+.|.+.|+. +.|. .++|++++.|+ ++.|. +++|..+++||+++.|.....++
T Consensus 2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeC
Confidence 567777888888753 5553 25555566665 34442 55555566666666665443343
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=93.62 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=65.4
Q ss_pred cCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEEece-----------EEcCCcEECCCCEEeceEEe
Q 009817 381 YDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEHS-----------IVGERSRLDYGVELKDTVML 443 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i~~s-----------iIg~~~~Ig~~~~I~~s~i~ 443 (524)
+++.+.+.....+++++.|+ .+.+. ++.||++|.|+ ++.|.++ .||+++.|+.++.|.+++|.
T Consensus 8 I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IG 87 (164)
T cd04646 8 VCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIG 87 (164)
T ss_pred ECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEEC
Confidence 34444444555556666664 35552 46899999998 6777653 57788888888888776555
Q ss_pred CCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 444 GADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
++ +.||.++.| .++.|++++.||.+++|...
T Consensus 88 d~-------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 88 NN-------------------NVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred CC-------------------CEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 55 788888888 56888888888888888764
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=100.53 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=14.0
Q ss_pred eEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.| .+++||++|.||.++.|..+
T Consensus 183 v~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 183 CFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred CEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 444444444 34555555555555555443
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-08 Score=93.01 Aligned_cols=20 Identities=20% Similarity=-0.056 Sum_probs=10.9
Q ss_pred eEeecCCHHHHHHHHHHhhc
Q 009817 354 YWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 354 ~w~dIgt~~d~~~An~~l~~ 373 (524)
++..++.++...+....+.+
T Consensus 62 ~iiai~~~~~~~~i~~~l~~ 81 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKA 81 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHh
Confidence 45566655655555544443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=109.89 Aligned_cols=67 Identities=25% Similarity=0.463 Sum_probs=40.5
Q ss_pred eEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEE
Q 009817 407 AIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (524)
Q Consensus 407 siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~I 484 (524)
+.||++|.|+ ++.|.+|+||.+|+|+ ++.+.++++ +++ +.||.++.|+ +|+|+++|.|
T Consensus 281 ~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~i----------------g~~---~~I~~~~~I~~~~~Ig~~~~I 340 (450)
T PRK14360 281 TVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQI----------------GDG---VKIGPYAHLRPEAQIGSNCRI 340 (450)
T ss_pred cEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccc----------------cCC---cEECCCCEECCCCEEeCceEE
Confidence 4455555554 3445555555555553 334444444 444 7788888886 6888888888
Q ss_pred CCCcEEeCC
Q 009817 485 GKDVVIVNK 493 (524)
Q Consensus 485 g~~~~i~~~ 493 (524)
|.++.|.+.
T Consensus 341 g~~~~i~~~ 349 (450)
T PRK14360 341 GNFVEIKKS 349 (450)
T ss_pred CCCEEEecc
Confidence 887777654
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-08 Score=93.23 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=61.3
Q ss_pred ceEECCCCEEC-ceEEe-----ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEee-eEE
Q 009817 406 DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CII 478 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~-----~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~-~iI 478 (524)
++.||++|+|+ ++.|. ++.||++|.|++++.|.... +. ...++++ +.|+.++.|.. |+|
T Consensus 20 ~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~--~~---------~v~Ig~~---~~I~~~~~i~g~~~I 85 (167)
T cd00710 20 DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE--GY---------SVWIGKN---VSIAHGAIVHGPAYI 85 (167)
T ss_pred eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC--CC---------CEEECCC---ceECCCCEEeCCEEE
Confidence 45566666666 34443 46888888888888885210 00 0112222 77888888864 999
Q ss_pred CCCCEECCCcEEeCCCCCCCCCCceEEecCc----EEEcCCCEeCCCcc
Q 009817 479 DKNVKIGKDVVIVNKDEADRPELGFYIRSGI----TIIMEKATIEDGMV 523 (524)
Q Consensus 479 ~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~----~vv~~~~~i~~gtv 523 (524)
|++|.||.++.|.+. ...++..|+.+. ..|++++.++++++
T Consensus 86 g~~~~Ig~~~~I~~~----~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 86 GDNCFIGFRSVVFNA----KVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred CCCCEECCCCEEECC----EECCCCEEcCCCEEeCCEeCCCCEECCCCE
Confidence 999999999998764 344444444442 24455666665554
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-08 Score=94.95 Aligned_cols=95 Identities=13% Similarity=0.271 Sum_probs=67.6
Q ss_pred ccCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEE-----eceEEcCCcEECCCCEEeceEEeCCccc
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY 448 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i-----~~siIg~~~~Ig~~~~I~~s~i~~~~~~ 448 (524)
++++.+.+.....+++++.|. +|.|. +++||++|.|+ +|.| .+|+||++++|++++.|+++++..+
T Consensus 16 ~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~--- 92 (192)
T TIGR02287 16 YVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN--- 92 (192)
T ss_pred EECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC---
Confidence 334444444444444555553 35553 35677777777 4666 5699999999999999999888877
Q ss_pred cchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 449 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 449 ~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.|. +++|++++.||+++.+...
T Consensus 93 ----------------~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 93 ----------------ALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred ----------------CEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 8888888885 5888888888888877754
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=109.56 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=35.7
Q ss_pred ccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCcccc
Q 009817 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQ 449 (524)
Q Consensus 392 ~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~ 449 (524)
.+++++.|+ ++.|. +++||+||.|+ ++.|++|+||++|.|+. +.+.++++..+..++
T Consensus 273 ~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig 332 (482)
T PRK14352 273 TIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVG 332 (482)
T ss_pred EECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEEC
Confidence 334444442 24443 47777788887 67777777777777763 667777776664333
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-08 Score=84.87 Aligned_cols=67 Identities=10% Similarity=0.215 Sum_probs=55.5
Q ss_pred ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCE
Q 009817 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~ 483 (524)
+++|+++|.|+ ++.|. +++||.+|+|+. +|.++++++. +.|+++++|.+++||++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 56777777776 45554 488888888864 6789999988 8899999999999999999
Q ss_pred ECCCcEEeCC
Q 009817 484 IGKDVVIVNK 493 (524)
Q Consensus 484 Ig~~~~i~~~ 493 (524)
||+++.+.|.
T Consensus 88 ig~~~~~~~~ 97 (101)
T cd05635 88 LGAGTNNSDL 97 (101)
T ss_pred ECCCceeccc
Confidence 9999999875
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.79 E-value=5e-08 Score=90.79 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=66.3
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEEC
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (524)
++.|+++|.|.+ .+..+.||++|.|+++|.|.++...... ........++++ +.|++++.+.+++|++++.||
T Consensus 27 ~~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~---~~~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~v~Ig 99 (161)
T cd03359 27 KTIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSK---GVAFFPLHIGDY---VFIGENCVVNAAQIGSYVHIG 99 (161)
T ss_pred ceEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCC---CccccCeEECCc---cEECCCCEEEeeEEcCCcEEC
Confidence 455666665552 2234689999999999999875432221 001112345555 788888888888999999999
Q ss_pred CCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 486 KDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 486 ~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+++.|.... ...++..|+.| ++|.+++.|+++++
T Consensus 100 ~~~~Ig~~~---~I~~~~~i~~g-~~V~~~~~i~~~~v 133 (161)
T cd03359 100 KNCVIGRRC---IIKDCVKILDG-TVVPPDTVIPPYSV 133 (161)
T ss_pred CCCEEcCCC---EECCCcEECCC-CEECCCCEeCCCCE
Confidence 988887652 33334444444 35555555555554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-06 Score=90.80 Aligned_cols=346 Identities=15% Similarity=0.179 Sum_probs=193.7
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeec-CcchhHHHHHHHHHhc----CCC-eEEEEeccC-chhHHHHHHHhhh
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTYF 164 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~s----Gi~-~I~Ivt~~~-~~~l~~hl~~~y~ 164 (524)
.+++.+|.||||.||||+ ..-||.++|+. |+ .++|..++++... |.+ -.+|.+.++ .++..+++. .|-
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~-k~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVE-KYT 151 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHH-HcC
Confidence 478899999999999997 35899999995 56 8999998887653 432 447788876 455777774 341
Q ss_pred cCCcccCCCeEEEEc---------cccC----CC-CCCCCcc-cCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecc
Q 009817 165 GNGTNFGDGFVEVLA---------ATQT----PG-ESGKNWF-QGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR 227 (524)
Q Consensus 165 ~~~~~~~~~~V~vl~---------~~q~----~~-e~~~~~~-~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~ 227 (524)
.+.. .|.++. +... .+ .+...|+ -|.++...... ..++++...+.+++.+.+.|.+..
T Consensus 152 ----~~~~-~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga 226 (469)
T PLN02474 152 ----NSNI-EIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGA 226 (469)
T ss_pred ----CCcc-ceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCcccc
Confidence 1111 122111 0000 00 0111243 56666544332 224444456889999999999764
Q ss_pred cCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceE-EEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcce
Q 009817 228 MDYMDFIQSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVA 306 (524)
Q Consensus 228 ~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~ 306 (524)
.-=-.++..|.++++++++=+.+...+. ..-|. +..|..-++.++.+-|.....+ .+ + ...-.+.
T Consensus 227 ~vDp~~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~dgk~~lvEysqvp~e~~~~---f~-~---------~~kf~~f 292 (469)
T PLN02474 227 IVDLKILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISYEGKVQLLEIAQVPDEHVNE---FK-S---------IEKFKIF 292 (469)
T ss_pred ccCHHHHHHHHhcCCceEEEEeecCCCC-CCccEEEEECCEEEEEEEecCCHHHHHh---hc-c---------cccceee
Confidence 3224577888888998887666544322 22343 4445444577788766543210 00 0 0123577
Q ss_pred eeeEEEEeHHHHHHHHHhhCC--------CCCc---hh--hhhHHhhhhc-CceEEEEec-CeEeecCCHHHHHHHHHHh
Q 009817 307 SMGVYVFKKDVLFKLLRWRYP--------TSND---FG--SEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 307 ~~GIYvf~~~vL~~ll~~~~~--------~~~d---~~--~dii~~li~~-~~V~~y~~~-~~w~dIgt~~d~~~An~~l 371 (524)
+++.+.|+-+.|.++++.... ...+ +. +..+-.+++- .+..++.++ ..+.-+-+..|++.+..++
T Consensus 293 Ntnn~w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdl 372 (469)
T PLN02474 293 NTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDL 372 (469)
T ss_pred eeeeEEEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHH
Confidence 999999999999887653210 0001 00 0011122221 234444443 2366788888888888776
Q ss_pred hccCCCccccCCCCCCCCCC--ccCCCe-EEcC--eeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCc
Q 009817 372 TKESPAFHFYDPKTPFYTSP--RFLPPT-KIDN--CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD 446 (524)
Q Consensus 372 ~~~~~~~~~~~~~~~i~~~~--~i~p~~-~i~~--~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~ 446 (524)
.......-...+.....+.+ .++|.. +++. .+.. +--..++ | .+-.|--+++.|.|+.+++++++.+
T Consensus 373 y~l~~~~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~----~iPsl~~-~--d~LtV~Gdv~fG~~v~l~G~v~i~~- 444 (469)
T PLN02474 373 YTLVDGFVIRNKARTNPSNPSIELGPEFKKVANFLSRFK----SIPSIVE-L--DSLKVSGDVWFGSGIVLKGKVTITA- 444 (469)
T ss_pred HHhccCeEEecCcccCCCCCcEEECcccccHHhHHHhcC----CCCCccc-C--CeEEEeeeeEECCCcEEEEEEEEEc-
Confidence 54432221111111111111 222221 1111 2221 1111121 1 2345556699999999999998876
Q ss_pred cccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 447 YYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 447 ~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
++..|+.|.+|++++|++|-.+.
T Consensus 445 -------------~~~~~~~ip~g~~l~~~~~~~~~ 467 (469)
T PLN02474 445 -------------KSGVKLEIPDGAVLENKDINGPE 467 (469)
T ss_pred -------------CCCCeeecCCCcEecceeecccC
Confidence 34456899999999998886654
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=107.46 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=45.3
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEEC
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 485 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig 485 (524)
++.|+++|.|++ +++||++|.|+++|.|.+++|+.+ +.|++++.|.+|+|++++.||
T Consensus 274 ~~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~~~~ig 330 (459)
T PRK14355 274 DTTIYPGVCISG----DTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGDDVAIG 330 (459)
T ss_pred CCEEeCCcEEeC----CCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECCCCEEC
Confidence 455555555553 589999999999999999988888 666666666666666666655
Q ss_pred CCcEEeC
Q 009817 486 KDVVIVN 492 (524)
Q Consensus 486 ~~~~i~~ 492 (524)
.++.|..
T Consensus 331 ~~~~i~~ 337 (459)
T PRK14355 331 PMAHLRP 337 (459)
T ss_pred CCCEECC
Confidence 5554443
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-08 Score=88.39 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=16.4
Q ss_pred ceEECCCCEECc-eEE-eceEEcCCcEECCCCEEe
Q 009817 406 DAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELK 438 (524)
Q Consensus 406 ~siIg~g~~I~~-~~i-~~siIg~~~~Ig~~~~I~ 438 (524)
++.|+++|.|.. +.| .++.||++|.|+.++.|.
T Consensus 31 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 355666666662 333 234555555555555544
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-08 Score=97.60 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCccCCCeEEcCeeeeceEECCCCEECceEE-eceEEcCCcEECCCCEEe
Q 009817 390 SPRFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELK 438 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i~~siIg~g~~I~~~~i-~~siIg~~~~Ig~~~~I~ 438 (524)
..|+.|++.+.. .+.||+||+|..+.| .++.||++|.|+.++.|.
T Consensus 100 ~~rv~p~a~i~~----ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG 145 (269)
T TIGR00965 100 GFRVVPGAAVRQ----GAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVG 145 (269)
T ss_pred CEEECCCcEECC----CcEECCCCEEeeeEEcCCcEECCCCEECCCcEEC
Confidence 445555555543 456666666653322 134555555555555554
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-07 Score=87.51 Aligned_cols=219 Identities=18% Similarity=0.201 Sum_probs=138.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
++..|||+|-|...|. ..|-+.+++|+ |||.|+++++.+++ |++|+|-+ .++.+.+.. +.| |
T Consensus 2 ~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A-~~y-------g 64 (228)
T COG1083 2 MKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEA-KKY-------G 64 (228)
T ss_pred cceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHH-HHh-------C
Confidence 4557999999999998 46999999999 99999999999997 67877666 345555443 333 3
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcC--ceecccCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCG--DHLYRMDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~g--D~l~~~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
.. +.+..+..... +- ..|-+++.++...+.+ ..+.++++.+ ..+...++.+.++.+.+++.+-.+.+.
T Consensus 65 ak-~~~~Rp~~LA~----D~-ast~~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~ 134 (228)
T COG1083 65 AK-VFLKRPKELAS----DR-ASTIDAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAV 134 (228)
T ss_pred cc-ccccCChhhcc----Cc-hhHHHHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEe
Confidence 11 21222211111 10 1344566666666542 3344666655 345567899999999998888888887
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
+.... + |-... +++|.+..+.|.|...... +. ....|..+..+|+++.+.|.+ . .
T Consensus 135 e~e~~-p--~k~f~-~~~~~~~~~~~~~~~~~rr-------------Q~-Lpk~Y~~NgaiYi~~~~~l~e---~----~ 189 (228)
T COG1083 135 ECEHH-P--YKAFS-LNNGEVKPVNEDPDFETRR-------------QD-LPKAYRENGAIYINKKDALLE---N----D 189 (228)
T ss_pred ecccc-h--HHHHH-hcCCceeecccCCcccccc-------------cc-chhhhhhcCcEEEehHHHHhh---c----C
Confidence 77542 1 11111 2347888888776322110 00 013467788999999998753 1 1
Q ss_pred CchhhhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHhhc
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l~~ 373 (524)
.-|. .+...|..+. ...||++..||..|+..+..
T Consensus 190 ~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 190 CFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred ceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 1111 2345556553 36799999999999876643
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-08 Score=93.79 Aligned_cols=141 Identities=19% Similarity=0.255 Sum_probs=69.1
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEece-------------EE
Q 009817 380 FYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDT-------------VM 442 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s-------------~i 442 (524)
.++|.+-|.+.+.++++++|+. |.|. ++.|++|+.|+ ++.|+ ++.||.+++|-+.+.|.+. +|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 4455555555555555555554 4443 46666666666 34333 3445544443333332210 00
Q ss_pred eCCccccchhhH--HhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC-CCCCC-CCceEEecCc------EE
Q 009817 443 LGADYYQTESEI--ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD-EADRP-ELGFYIRSGI------TI 511 (524)
Q Consensus 443 ~~~~~~~~~~~~--~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~-e~~~~-~~~~~i~~g~------~v 511 (524)
..++.+-.++.+ -+.-+.| -+.||+|+.+- +|.|..+|+||.+|++.|.. -+.++ -+++.|-+|. +.
T Consensus 85 G~~n~IRE~vTi~~GT~~g~g--~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvr 162 (260)
T COG1043 85 GDNNTIREFVTIHRGTVQGGG--VTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVR 162 (260)
T ss_pred CCCCeEeeEEEEeccccCCce--eEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEE
Confidence 111111111111 1111222 25566666663 78888999999999999986 11111 1223333443 36
Q ss_pred EcCCCEeCCCc
Q 009817 512 IMEKATIEDGM 522 (524)
Q Consensus 512 v~~~~~i~~gt 522 (524)
||+.|.|+-.+
T Consensus 163 IG~~amiGg~S 173 (260)
T COG1043 163 IGAHAMIGGLS 173 (260)
T ss_pred Ecchheecccc
Confidence 77777776554
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.6e-08 Score=92.08 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCCCCCCCCCccCCCeEEcC-eeeec-eEECCCCEEC-ceEE-eceEEcCCcEECCCCEEeceEEeC
Q 009817 382 DPKTPFYTSPRFLPPTKIDN-CRIKD-AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~~-~~i~~-siIg~g~~I~-~~~i-~~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
.+...+.+.+.+.++++|+. +.|.+ ++|++++.|+ ++.| .++.|+.+++||+++.|.....++
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~ 71 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIG 71 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEc
Confidence 34555666666666666643 44433 6666666666 3444 356666666666777776544443
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.4e-08 Score=96.75 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=77.7
Q ss_pred ccCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEEe-----------ceEEcCCcEECCCCEEeceEE
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVE-----------HSIVGERSRLDYGVELKDTVM 442 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i~-----------~siIg~~~~Ig~~~~I~~s~i 442 (524)
+++|.+.+.....+++++.|. +|.|. +++||++|.|+ ++.|. +|+||++|+|+.+|.|.++++
T Consensus 60 ~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~I 139 (269)
T PLN02296 60 FVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTV 139 (269)
T ss_pred EECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEE
Confidence 455555555555566666663 45553 35788999998 56663 589999999999999988776
Q ss_pred eCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCE
Q 009817 443 LGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKAT 517 (524)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~ 517 (524)
.++ +.||.++.| .++.|++++.||.++.|... ..|.++.++.|..+.
T Consensus 140 gd~-------------------v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~---------~~I~~~~~~~G~PA~ 187 (269)
T PLN02296 140 EDE-------------------AFVGMGATLLDGVVVEKHAMVAAGALVRQN---------TRIPSGEVWAGNPAK 187 (269)
T ss_pred CCC-------------------cEECCCcEECCCeEECCCCEECCCCEEecC---------CEeCCCeEEeccCcE
Confidence 666 788888888 46888888888888888765 345555555555443
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=87.69 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=72.5
Q ss_pred cccCCCCCCCCCCccCCCeEEc-Ceeeec----eEECCCCEEC-ceEEec-----eEEcCCcEECCCCEEeceEEeCCcc
Q 009817 379 HFYDPKTPFYTSPRFLPPTKID-NCRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADY 447 (524)
Q Consensus 379 ~~~~~~~~i~~~~~i~p~~~i~-~~~i~~----siIg~g~~I~-~~~i~~-----siIg~~~~Ig~~~~I~~s~i~~~~~ 447 (524)
.++++.+.+.....+++++.|. ++.|.. ++||++|.|+ +|.|.+ ++||+++.|+.++.|.++++..+
T Consensus 7 ~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~-- 84 (154)
T cd04650 7 AYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY-- 84 (154)
T ss_pred eEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC--
Confidence 3455555555556666666664 466654 4899999998 677764 89999999999999988776666
Q ss_pred ccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 448 YQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 448 ~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.+. +++|++++.|+.++.+..+
T Consensus 85 -----------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g 114 (154)
T cd04650 85 -----------------VIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114 (154)
T ss_pred -----------------CEEcCCCEEeCCCEECCCCEECCCCEECCC
Confidence 8888888884 6888888888888877764
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=86.35 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=33.5
Q ss_pred CCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeC
Q 009817 387 FYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 387 i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
|.+++++.++++|.. +.|. .+.|+.++.|+ ++.|. ++.|+.+++||++|.|.....++
T Consensus 4 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 4 VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred cCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 444555555666643 4443 46677777777 35553 36666677777777775444443
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.5e-07 Score=95.70 Aligned_cols=210 Identities=20% Similarity=0.246 Sum_probs=125.7
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhc--------------CCCeEEEEec-cCchh
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GINKIFVLTQ-FNSAS 154 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~s--------------Gi~~I~Ivt~-~~~~~ 154 (524)
.++.+||||||.||||+ ...||+|+||+ |+ ||+++.++++... .+ .++|+|. ++.+.
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~I-p~~IMTS~~t~~~ 179 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTI-YILVLTSSFNHDQ 179 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCC-CEEEEeCcchHHH
Confidence 45899999999999996 57899999995 78 9999999999874 23 4555554 66777
Q ss_pred HHHHHHH-hhhcCCcccCCCeEEEEccccCCC---CCCC---------C-cccCcHHHHHHHH--HHHHhhhcCCCCeEE
Q 009817 155 LNRHIAR-TYFGNGTNFGDGFVEVLAATQTPG---ESGK---------N-WFQGTADAVRQFT--WVFEDAKNRNIENVA 218 (524)
Q Consensus 155 l~~hl~~-~y~~~~~~~~~~~V~vl~~~q~~~---e~~~---------~-~~~Gta~al~~a~--~~i~~~~~~~~e~~L 218 (524)
+.+++.+ .||+-. ...|.++....-|- +.++ . .+-|.++..+... ..++++...+.+++.
T Consensus 180 t~~~f~~~~~FGl~----~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~ 255 (482)
T PTZ00339 180 TRQFLEENNFFGLD----KEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQ 255 (482)
T ss_pred HHHHHHhccccCCC----cccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEE
Confidence 8777753 223311 11122211100000 0010 1 1247777555443 235555557889999
Q ss_pred EEcCceecc-cCHHHHHHHHHHcCC-cEEEEEEEcCCCCCCcceEEE-ECCCCcEEEEEecCCcccccccccccccccCC
Q 009817 219 ILCGDHLYR-MDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFS 295 (524)
Q Consensus 219 vl~gD~l~~-~dl~~ll~~h~~~~a-d~tl~~~~~~~~~a~~~g~v~-id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~ 295 (524)
+.+.|.+.- .-=-.|+-.+.+.++ ++.-.+.+.... +.-|++. .|..-.|+++.|-+..... ...-+++.+
T Consensus 256 v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~--EkvG~~~~~~g~~~vvEYsEi~~~~~~-~~~~~~g~l--- 329 (482)
T PTZ00339 256 VISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDD--ESVGVFCLKDYEWQVVEYTEINERILN-NDELLTGEL--- 329 (482)
T ss_pred EEecCcccccccCHHHhHHHHHCCchhheeeeecCCCC--CceeEEEEeCCcccEEEEeccChhhhh-cccccCCee---
Confidence 999999743 333456677777777 655444443322 3456553 4444467888776543221 000011111
Q ss_pred ccccccCCcceeeeEEEEeHHHHHHHHH
Q 009817 296 PQEARKCPYVASMGVYVFKKDVLFKLLR 323 (524)
Q Consensus 296 ~~~~~~~~~l~~~GIYvf~~~vL~~ll~ 323 (524)
.-...++..++|+.++|.++.+
T Consensus 330 ------~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 ------AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred ------cccccceEEEEEEHHHHHHHhh
Confidence 1256788999999999987654
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.3e-08 Score=88.06 Aligned_cols=94 Identities=11% Similarity=0.155 Sum_probs=70.9
Q ss_pred cCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEEec-----eEEcCCcEECCCCEEeceEEeCCcccc
Q 009817 381 YDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYYQ 449 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i~~-----siIg~~~~Ig~~~~I~~s~i~~~~~~~ 449 (524)
+++.+.+.....+++++.|. ++.|. +++||++|.|+ ++.|.. ++||+++.|+.+|.|.++++.++
T Consensus 8 i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~---- 83 (153)
T cd04645 8 IAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN---- 83 (153)
T ss_pred ECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC----
Confidence 34444444445556666664 35553 36899999998 677776 59999999999999999887777
Q ss_pred chhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 450 TESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 450 ~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.|+.++.|. +++|++++.||.++.+...
T Consensus 84 ---------------~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 84 ---------------CLIGMGAIILDGAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred ---------------CEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 8899998886 7888888888888877543
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8e-08 Score=92.27 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=47.4
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEEC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIG 485 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig 485 (524)
+.|+++|.|+.....+|+||+++.||+++.|.++++.++ +.||.++.|. ++.||+++.|+
T Consensus 56 ~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~-------------------v~IG~ga~V~~g~~IG~~s~Vg 116 (196)
T PRK13627 56 ANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD-------------------ALVGMNSVIMDGAVIGEESIVA 116 (196)
T ss_pred CEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC-------------------CEECcCCccCCCcEECCCCEEc
Confidence 444455555433334688999999999998888776666 7888877774 57777777777
Q ss_pred CCcEEeCC
Q 009817 486 KDVVIVNK 493 (524)
Q Consensus 486 ~~~~i~~~ 493 (524)
.++.+...
T Consensus 117 ags~V~~~ 124 (196)
T PRK13627 117 AMSFVKAG 124 (196)
T ss_pred CCCEEeCC
Confidence 77777654
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-08 Score=103.03 Aligned_cols=90 Identities=13% Similarity=0.216 Sum_probs=74.1
Q ss_pred cCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhc
Q 009817 381 YDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA 459 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~ 459 (524)
+.+.+.+ ..+.|++++.|.+ .+.+|+||++|.|+ +|.|++|+|+++|+|+++|+|.++++..+
T Consensus 285 i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~-------------- 348 (380)
T PRK05293 285 IAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN-------------- 348 (380)
T ss_pred ECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC--------------
Confidence 3444444 2445666666643 46689999999998 78999999999999999999999999988
Q ss_pred CCccceEeCCCcEEee-----eEECCCCEECCCcEEe
Q 009817 460 EGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIV 491 (524)
Q Consensus 460 ~g~~~~~Ig~~~~I~~-----~iI~~~~~Ig~~~~i~ 491 (524)
+.||.++.|++ .+||++++|+.+++|.
T Consensus 349 -----~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 -----AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -----CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999987 8999999999988763
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-08 Score=89.71 Aligned_cols=95 Identities=13% Similarity=0.223 Sum_probs=60.6
Q ss_pred ccCCCCCCCCCCccCCCeEEc-Ceee----eceEECCCCEECceEEec------eEEcCCcEECCCCEEeceEEeCCccc
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-NCRI----KDAIISHGCFLRECTVEH------SIVGERSRLDYGVELKDTVMLGADYY 448 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-~~~i----~~siIg~g~~I~~~~i~~------siIg~~~~Ig~~~~I~~s~i~~~~~~ 448 (524)
|++|++.+..++++++.+.|- ++.+ .+-.||++|.|.+.++-| +.||++++||++|.|++|.+-.+
T Consensus 19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~--- 95 (176)
T COG0663 19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN--- 95 (176)
T ss_pred EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC---
Confidence 556666666666666666663 2333 346677777777544433 57788888887777777555555
Q ss_pred cchhhHHhhhcCCccceEeCCCcEEee-eEECCCCEECCCcEEeCC
Q 009817 449 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 449 ~~~~~~~~~~~~g~~~~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||=|+.|-| |.||++|.||+++.+..+
T Consensus 96 ----------------~lIGmgA~vldga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 96 ----------------VLIGMGATVLDGAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred ----------------cEEecCceEeCCcEECCCcEEccCCcccCC
Confidence 66666666654 666666666666666655
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-07 Score=91.96 Aligned_cols=68 Identities=6% Similarity=0.182 Sum_probs=45.4
Q ss_pred eEECCCCEEC-ceEE-----------eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-
Q 009817 407 AIISHGCFLR-ECTV-----------EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI- 473 (524)
Q Consensus 407 siIg~g~~I~-~~~i-----------~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I- 473 (524)
.+||++|.|+ +|.| .+++||++|+||++|.|.+++|.++ +.||.++.|
T Consensus 99 I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~-------------------v~IG~~svI~ 159 (246)
T PLN02472 99 ITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE-------------------CIIGQHSILM 159 (246)
T ss_pred eEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC-------------------CEECCCCEEC
Confidence 4555556555 3444 2588999999999988887666666 677777666
Q ss_pred eeeEECCCCEECCCcEEeCC
Q 009817 474 RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~~ 493 (524)
.+++|++++.||.++.+..+
T Consensus 160 ~gavIg~~~~Ig~gsvV~~g 179 (246)
T PLN02472 160 EGSLVETHSILEAGSVLPPG 179 (246)
T ss_pred CCCEECCCCEECCCCEECCC
Confidence 35666666666666655543
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=100.87 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=43.4
Q ss_pred ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEE
Q 009817 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~I 484 (524)
++.||++|.|+ ++.|.+|+||++|.|+. +.|.++++.++ +.|+.++.|.+|+||+++.|
T Consensus 265 ~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~-------------------~~i~~~~~i~~~~ig~~~~i 324 (430)
T PRK14359 265 ECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPL-------------------AHIRPKSEIKNTHIGNFVET 324 (430)
T ss_pred ceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCC-------------------CEECCCcEEeccEEcCcEEE
Confidence 57888888887 67777888888888875 77778777777 55555555555555555544
Q ss_pred CC
Q 009817 485 GK 486 (524)
Q Consensus 485 g~ 486 (524)
+.
T Consensus 325 ~~ 326 (430)
T PRK14359 325 KN 326 (430)
T ss_pred cc
Confidence 44
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=92.13 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=30.2
Q ss_pred CCCCCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEec
Q 009817 387 FYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD 439 (524)
Q Consensus 387 i~~~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~ 439 (524)
+...+.+++++.|. ++.|. +++||++|.|+ ++.|. +|+||++|+|+.++.|.+
T Consensus 95 I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~ 151 (231)
T TIGR03532 95 IRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG 151 (231)
T ss_pred EeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcc
Confidence 33333444444442 23332 47777777776 45553 577777777777777754
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=98.25 Aligned_cols=69 Identities=28% Similarity=0.541 Sum_probs=62.1
Q ss_pred eEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCC
Q 009817 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEAD 497 (524)
Q Consensus 418 ~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~ 497 (524)
+.+++|.|+.+|.|. | +|++|+++.+ +.|+++|.|++|+|.++|.||+||.|.+.
T Consensus 292 s~v~nSLv~~GciI~-G-~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~~l~~a---- 346 (393)
T COG0448 292 SEVSNSLVAGGCIIS-G-TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGAVLRRA---- 346 (393)
T ss_pred ceEeeeeeeCCeEEE-e-EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCCEEEEE----
Confidence 346789999999999 4 9999999999 99999999999999999999999999985
Q ss_pred CCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 498 RPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 498 ~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+|.+|+.|++|++|
T Consensus 347 -------------IIDk~v~I~~g~~i 360 (393)
T COG0448 347 -------------IIDKNVVIGEGVVI 360 (393)
T ss_pred -------------EeCCCcEeCCCcEE
Confidence 78888888888765
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-07 Score=84.35 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=3.7
Q ss_pred EeecCCH
Q 009817 355 WEDIGTI 361 (524)
Q Consensus 355 w~dIgt~ 361 (524)
+.-++++
T Consensus 60 iiai~~~ 66 (197)
T cd03360 60 VVAIGDN 66 (197)
T ss_pred EEecCCH
Confidence 4445565
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-07 Score=97.67 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=33.9
Q ss_pred CccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 391 ~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.+++++.|++++|.+++|++||.|+ +|.|++|+|++++.|+++++|+++++..+
T Consensus 295 ~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~ 350 (361)
T TIGR02091 295 SLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKN 350 (361)
T ss_pred CEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCC
Confidence 45555566654455666666666666 46666666666666666666666555544
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=93.51 Aligned_cols=101 Identities=17% Similarity=0.267 Sum_probs=74.3
Q ss_pred cccCCCCCCCCCCccCCCeEEc-------CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccc
Q 009817 379 HFYDPKTPFYTSPRFLPPTKID-------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (524)
Q Consensus 379 ~~~~~~~~i~~~~~i~p~~~i~-------~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~ 450 (524)
.+++|++.+++++.|+|++.|+ ++|+.+|||-++|.|. +++|.||+||++|.||.+++++..-+..... .+
T Consensus 289 VyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~-~~ 367 (407)
T KOG1460|consen 289 VYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPN-LP 367 (407)
T ss_pred eEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCC-CC
Confidence 3778999999999999988874 3777899999999999 7999999999999999999998765554411 11
Q ss_pred hhhHHhhhcCCccceEeCCCcEEeeeEECCCCEE
Q 009817 451 ESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (524)
Q Consensus 451 ~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~I 484 (524)
+. .-+++|+. +.+++.+.+.||++-+|-.+
T Consensus 368 ~~-a~Tilga~---v~v~dev~v~~s~vlp~k~l 397 (407)
T KOG1460|consen 368 FA-ALTILGAD---VSVEDEVIVLNSIVLPNKEL 397 (407)
T ss_pred cc-eeEEeccc---ceecceeEEeeeeEecCCcc
Confidence 11 12333344 66666666666666666544
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=93.66 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=47.1
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEEC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIG 485 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig 485 (524)
+.||+|++|.+. ..++||++|.||++|.|...+.+++.-.+ ......+++++ +.||.|+.| .++.||++|.||
T Consensus 167 A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g~~-~~~r~piIGd~---V~IGagA~Ilggi~IGd~a~IG 240 (294)
T PLN02694 167 AKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKA-CGDRHPKIGDG---VLIGAGATILGNVKIGEGAKIG 240 (294)
T ss_pred ceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCcccc-cCCCccEECCC---eEECCeeEECCCCEECCCCEEC
Confidence 445555555421 13677777777777777666666552100 01123455555 677777777 577777777777
Q ss_pred CCcEEeC
Q 009817 486 KDVVIVN 492 (524)
Q Consensus 486 ~~~~i~~ 492 (524)
.+++|..
T Consensus 241 AgSVV~k 247 (294)
T PLN02694 241 AGSVVLI 247 (294)
T ss_pred CCCEECC
Confidence 7777775
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-07 Score=98.15 Aligned_cols=54 Identities=15% Similarity=0.346 Sum_probs=31.5
Q ss_pred CccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 391 ~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.|+++|.|+ +.|.+|+|+++|.|+ +|.|++|+|+.+|.|+++++|+++++..+
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~ 344 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKD 344 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCC
Confidence 3445555553 345556666666666 56666666666666666666666555544
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=100.70 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=48.6
Q ss_pred eEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 418 ~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.+.+|+||.+|+| ++|.|++|+++.+ |.||++|.|++|+|+++|+||+++.|.++
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~~ 378 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRRC 378 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEeeE
Confidence 45668899999999 6899988888888 89999999999999999999999998764
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.1e-07 Score=75.88 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=48.1
Q ss_pred ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCC
Q 009817 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPEL 501 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~ 501 (524)
.++||+++.|++++.|.+.+.++.+ +.||. .|.+|+|++++.|+.++.|.+.
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i~~~~~lg~s-------- 80 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNKQHDGFLGHS-------- 80 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEecCcCEEeee--------
Confidence 3678888888888777653333332 66654 4678888888888888888654
Q ss_pred ceEEecCcEEEcCCCEeCCCccc
Q 009817 502 GFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 502 ~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+||.++.|++++.+
T Consensus 81 ---------iIg~~v~ig~~~~~ 94 (101)
T cd05635 81 ---------YLGSWCNLGAGTNN 94 (101)
T ss_pred ---------EECCCCEECCCcee
Confidence 89999999998863
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.8e-07 Score=83.16 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=57.3
Q ss_pred CCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe-------------ceEEcCCcEECCCCEEeceEEeCCccccchhh
Q 009817 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKDTVMLGADYYQTESE 453 (524)
Q Consensus 388 ~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~-------------~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~ 453 (524)
...+.+.|++.|.+ .+.++.||++|.|+ ++.|. .++||+++.|++++.|.++.+..+
T Consensus 25 g~~~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~-------- 95 (161)
T cd03359 25 NGKTIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY-------- 95 (161)
T ss_pred CCceEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC--------
Confidence 33444444444432 11235666666666 45554 357999999999999988777776
Q ss_pred HHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 454 IASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 454 ~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.| .+|+|++++.|++++.+..+
T Consensus 96 -----------v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 96 -----------VHIGKNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred -----------cEECCCCEEcCCCEECCCcEECCCCEECCC
Confidence 788888877 46777777777777777665
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-07 Score=97.23 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=58.5
Q ss_pred CCCccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEe
Q 009817 389 TSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (524)
Q Consensus 389 ~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~I 467 (524)
..+.+++++.|++++|.+|+|+++|.|+ ++.|++|+|+++|+|+++|+|.+++++.+ +.|
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~-------------------~~i 374 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN-------------------VVV 374 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC-------------------CEE
Confidence 3467788888887889999999999998 79999999999999999999999888877 677
Q ss_pred CCCcEEee
Q 009817 468 GRNTKIRN 475 (524)
Q Consensus 468 g~~~~I~~ 475 (524)
|++++|.+
T Consensus 375 ~~~~~i~~ 382 (407)
T PRK00844 375 PPGATIGV 382 (407)
T ss_pred CCCCEECC
Confidence 77766644
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-07 Score=98.16 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=56.1
Q ss_pred EECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECC-------
Q 009817 408 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK------- 480 (524)
Q Consensus 408 iIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~------- 480 (524)
.+.+.+.+.++.+.+|+||++|+| +++.|++|+|+++ +.||+++.|.+|+|+.
T Consensus 294 ~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~ 353 (429)
T PRK02862 294 RYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESS 353 (429)
T ss_pred CCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCcccccc
Confidence 344455555677778999999999 8999999999988 9999999999999965
Q ss_pred ------------CCEECCCcEEeCC
Q 009817 481 ------------NVKIGKDVVIVNK 493 (524)
Q Consensus 481 ------------~~~Ig~~~~i~~~ 493 (524)
++.||++|.|.++
T Consensus 354 ~~~~~~~~~~~~~~~Ig~~~~i~~~ 378 (429)
T PRK02862 354 EEREELRKEGKPPLGIGEGTTIKRA 378 (429)
T ss_pred cccccccccCCcccEECCCCEEEEE
Confidence 7999999999886
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.8e-07 Score=84.26 Aligned_cols=68 Identities=21% Similarity=0.404 Sum_probs=32.1
Q ss_pred eEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCE
Q 009817 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (524)
Q Consensus 407 siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~ 483 (524)
+.||++|.|+ ++.|. ++.||.+++|+.++.|.+.+..++. +.||.++.|. ++.|++++.
T Consensus 118 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~ig~~~~v~~~~~i~~~~~ 179 (201)
T TIGR03570 118 VRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEG------------------VFIGAGATIIQGVTIGAGAI 179 (201)
T ss_pred CEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCC------------------CEECCCCEEeCCCEECCCCE
Confidence 5555555554 34332 3455555555555444432222221 4555555553 455555555
Q ss_pred ECCCcEEeC
Q 009817 484 IGKDVVIVN 492 (524)
Q Consensus 484 Ig~~~~i~~ 492 (524)
||.++++.+
T Consensus 180 i~~~~~v~~ 188 (201)
T TIGR03570 180 VGAGAVVTK 188 (201)
T ss_pred ECCCCEECC
Confidence 555555543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=87.22 Aligned_cols=81 Identities=25% Similarity=0.426 Sum_probs=43.0
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 484 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~I 484 (524)
.+.||+|++|.+. ...+||.+|+||++|.|...+.+++..... ......++++ +.||.|+.| .++.||+||.|
T Consensus 147 ~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~~~-~~~~p~IGd~---V~IGaga~Ilggv~IG~~a~I 220 (273)
T PRK11132 147 AAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGKTS-GDRHPKIREG---VMIGAGAKILGNIEVGRGAKI 220 (273)
T ss_pred cceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcccC-CCcCCEECCC---cEEcCCCEEcCCCEECCCCEE
Confidence 4566666666631 124677777777777765544444311000 0112344555 566666665 35666666666
Q ss_pred CCCcEEeC
Q 009817 485 GKDVVIVN 492 (524)
Q Consensus 485 g~~~~i~~ 492 (524)
|.++++..
T Consensus 221 GAgSvV~~ 228 (273)
T PRK11132 221 GAGSVVLQ 228 (273)
T ss_pred CCCCEECc
Confidence 66666654
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=83.88 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=62.3
Q ss_pred CCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCc
Q 009817 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~ 462 (524)
+...+.|.||+++.-. .++.||++|+|+ +|.+. ++.||++|.|+++|.|... +..+ +......-....
T Consensus 58 ig~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~----~h~~--~~~~r~~g~~~~ 129 (203)
T PRK09527 58 VGENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT----GHPV--HHELRKNGEMYS 129 (203)
T ss_pred cCCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC----CCCC--Chhhcccccccc
Confidence 4456667777776310 256677777777 55552 3688898899888888632 1101 000000000012
Q ss_pred cceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 463 ~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
-|+.||++++|. +|+|.++++||++++|..++
T Consensus 130 ~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgags 162 (203)
T PRK09527 130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGS 162 (203)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCC
Confidence 368899999995 78888888888888888775
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=83.08 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=53.6
Q ss_pred CCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCc
Q 009817 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGK 462 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~ 462 (524)
+...+.+.+++.|..- .+..||++|.|+ ++.+. .++||++|.|++++.|.... .+ +.. ....+. .
T Consensus 54 iG~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~---h~-~~~--~~~~~~---~ 122 (182)
T PRK10502 54 IGKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGS---HD-YSD--PHFDLN---T 122 (182)
T ss_pred cCCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCC---CC-CcC--CCcccc---c
Confidence 3344445555544210 134555555555 34332 46888888888887775321 11 100 000111 1
Q ss_pred cceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 463 ~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
-|+.||++++|. +|+|.++++||++++|....
T Consensus 123 ~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~s 155 (182)
T PRK10502 123 APIVIGEGCWLAADVFVAPGVTIGSGAVVGARS 155 (182)
T ss_pred CCEEEcCCcEEcCCCEEcCCCEECCCCEECCCC
Confidence 247888888884 78888888888888877653
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-06 Score=82.51 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=48.2
Q ss_pred ceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEE--------eCCccccchhhHHhhhcCCccceEeCCCcEE
Q 009817 406 DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVM--------LGADYYQTESEIASLLAEGKVPIGVGRNTKI 473 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i--------~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I 473 (524)
...||++|.|+ ++.+. .+.||++|.|+++|.|.+... +.+..+.. +... + ..-|+.||++++|
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~--~~~~-~--~~~~v~Ig~~~~i 139 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP--DMRT-L--ESSAVVIGQRVWI 139 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh--hhcc-c--ccCCeEEcCCcEE
Confidence 36777777777 45443 578888888888888865321 11100000 0000 0 0124777777777
Q ss_pred e-eeEECCCCEECCCcEEeCCC
Q 009817 474 R-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 474 ~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
. +++|.++++||++++|..++
T Consensus 140 g~~~~i~~g~~Ig~~~~Iga~s 161 (192)
T PRK09677 140 GENVTILPGVSIGNGCIVGANS 161 (192)
T ss_pred CCCCEEcCCCEECCCCEECCCC
Confidence 3 66677777777777776653
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-06 Score=77.07 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=48.7
Q ss_pred CCCCCccCCCeEEcC-eeee-ceEECCCCEECceEE-eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCcc
Q 009817 387 FYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (524)
Q Consensus 387 i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~~~~i-~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~ 463 (524)
+..++.+++++.|.. +.|. ++.||++|.|.. .+ .+++||.+|.||+++.|. +.+-+. ......++++
T Consensus 10 V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~-~~l~G~------~~~pV~IG~~-- 79 (147)
T cd04649 10 VRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM-GTLSGG------GNNVISIGKR-- 79 (147)
T ss_pred ECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE-EECCCC------cccCEEECCC--
Confidence 444455555555532 3332 466666666641 22 236777777777777776 222111 0011223333
Q ss_pred ceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 464 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 464 ~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.| +..||+|+.||+++++...
T Consensus 80 -~~IG~ga~I-gv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 80 -CLLGANSGI-GISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred -CEECCCCEE-eEEECCCCEECCCCEEeCC
Confidence 555555555 5566666666666666655
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=81.46 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=16.4
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.++.|. ++.||+++.||.++.|..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 5556555553 455666666666666554
|
Cysteine biosynthesis |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-06 Score=85.23 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=8.7
Q ss_pred eEEcCCcEECCCCEE
Q 009817 423 SIVGERSRLDYGVEL 437 (524)
Q Consensus 423 siIg~~~~Ig~~~~I 437 (524)
++||.+|.||.+|.|
T Consensus 225 avIGhds~IG~gasI 239 (341)
T TIGR03536 225 VMVGKGSDLGGGCST 239 (341)
T ss_pred CEECCCCEECCCCEE
Confidence 455555555555555
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=69.40 Aligned_cols=69 Identities=25% Similarity=0.420 Sum_probs=40.2
Q ss_pred EECCCCEEC-ceEEec-eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEE
Q 009817 408 IISHGCFLR-ECTVEH-SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (524)
Q Consensus 408 iIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~I 484 (524)
.|+++|.|+ ++.|.. ++||+++.|++++.|.+...+. ...|+.||+++.|. +|+|..+++|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~----------------~~~~~~ig~~~~v~~~~~i~~~~~i 65 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN----------------EKNPTIIGDNVEIGANAVIHGGVKI 65 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC----------------ccCCcEECCCcEECCCCEEeCCCEE
Confidence 455566665 344443 8888888888888887654321 11225566655553 3555555555
Q ss_pred CCCcEEeC
Q 009817 485 GKDVVIVN 492 (524)
Q Consensus 485 g~~~~i~~ 492 (524)
|+++.|..
T Consensus 66 g~~~~i~~ 73 (78)
T cd00208 66 GDNAVIGA 73 (78)
T ss_pred CCCCEECc
Confidence 55555543
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=90.68 Aligned_cols=67 Identities=25% Similarity=0.420 Sum_probs=40.9
Q ss_pred eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
++||++++||++|.|...+.+++.-.+. .....+++++ +.||.|+.| .++.||+++.||.+++|...
T Consensus 247 iVIGe~avIGdnV~I~~gVtIGg~g~~~-g~~~piIGd~---V~IGagA~IlggV~IGdga~IGAgSVV~~d 314 (360)
T PLN02357 247 VVIGETAVVGNNVSILHNVTLGGTGKQS-GDRHPKIGDG---VLIGAGTCILGNITIGEGAKIGAGSVVLKD 314 (360)
T ss_pred eEECCCCEECCCCEEeCCceecCccccC-CccCceeCCC---eEECCceEEECCeEECCCCEECCCCEECcc
Confidence 4555555555555554444444321111 1123566667 888888777 57888888888888888864
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-06 Score=79.94 Aligned_cols=99 Identities=23% Similarity=0.262 Sum_probs=53.0
Q ss_pred CCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCcc
Q 009817 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (524)
Q Consensus 388 ~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~ 463 (524)
.....+.+++++.-. .++.||++|+|+ ++.+. +..||+++.|+++|.|..+. ..+ ...+...-. .-.-
T Consensus 46 ~~~~~i~~~~~~~~~--~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~----h~~-~~~~~~~~~-~~~~ 117 (169)
T cd03357 46 GENVYIEPPFHCDYG--YNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAG----HPL-DPEERNRGL-EYAK 117 (169)
T ss_pred CCCCEEcCCEEEEeC--CcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCC----CCC-ChhHccccc-eecC
Confidence 334555566554210 134566666665 34332 46888888888888885431 001 011110000 0011
Q ss_pred ceEeCCCcEE-eeeEECCCCEECCCcEEeCCC
Q 009817 464 PIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 464 ~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
|+.||++++| .+|+|.++++||++++|..++
T Consensus 118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~Vgaga 149 (169)
T cd03357 118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGS 149 (169)
T ss_pred CcEeCCCEEECCCCEEeCCCEECCCCEECCCC
Confidence 4777777777 467777777777777776663
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=74.22 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEece
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDT 440 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s 440 (524)
+.|+++|.|.+. ..+.||++|.|+++|.|.++
T Consensus 8 ~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 8 VYIGPGCVISAG--GGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred cEECCCCEEecC--CceEECCCCEECCCCEEECC
Confidence 444444444321 24788888888888888765
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=91.10 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=12.4
Q ss_pred EEeceEEcCCcEECCC-CEEeceEEeCC
Q 009817 419 TVEHSIVGERSRLDYG-VELKDTVMLGA 445 (524)
Q Consensus 419 ~i~~siIg~~~~Ig~~-~~I~~s~i~~~ 445 (524)
.|.+|+|+++++|+.+ ++|.++++..+
T Consensus 301 ~i~~s~i~~~~~i~~~~~~~~~~ii~~~ 328 (353)
T TIGR01208 301 EVEHSIVLDESVIEGVQARIVDSVIGKK 328 (353)
T ss_pred EEEeeEEcCCCEEcCCcceeecCEEcCC
Confidence 3344555555555544 24444444333
|
Alternate name: dTDP-D-glucose synthase |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=90.72 Aligned_cols=236 Identities=17% Similarity=0.192 Sum_probs=133.8
Q ss_pred CeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECCCC---------cEEEEEecCCcccccc
Q 009817 215 ENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKA 284 (524)
Q Consensus 215 e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~~g---------~V~~~~EKp~~~~~~~ 284 (524)
..++|.++|.++ ..+- ..++ + .+++++++..+.+.+-+++.|+...|+++ .+..|..||...+..
T Consensus 54 pGv~V~s~D~vl~~~~~-~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~- 128 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDD-PLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMR- 128 (414)
T ss_pred cceEEEecccccccCcc-ccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHH-
Confidence 468999999444 3331 1221 1 23678888888877667899999999998 899999999877542
Q ss_pred cccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC----------------CCchhhhhHHhhhhcCceEE
Q 009817 285 MQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT----------------SNDFGSEIIPAAIMEHDVQA 348 (524)
Q Consensus 285 ~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~----------------~~d~~~dii~~li~~~~V~~ 348 (524)
....+. .......++|++.|+.+..+.|+...... ..+...|++..+..+-...-
T Consensus 129 --~~~av~-------~~~~~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~~g~~~~ei~lY~Dfl~aLg~~~t~e~ 199 (414)
T PF07959_consen 129 --ASGAVL-------PDGNVLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGLSGALPCEIDLYGDFLQALGPDATEEY 199 (414)
T ss_pred --hCCccc-------CCCcccccccceeccHHHHHHHHHhccCchHhhhhhhhhcCCccceehHHHHHHHHhcCCccccC
Confidence 111111 11234568999999998777766432111 12344566665554321110
Q ss_pred EEecCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCC-CeEEc-C--eeeeceEECCCCE-ECceEEece
Q 009817 349 YIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP-PTKID-N--CRIKDAIISHGCF-LRECTVEHS 423 (524)
Q Consensus 349 y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p-~~~i~-~--~~i~~siIg~g~~-I~~~~i~~s 423 (524)
.... ..+.+.-..+..|.+.+-....... + .....| +.+++ + ...-.....+... +....+.++
T Consensus 200 ~~~~--~~~~~~~~~l~~aR~~l~~~Lr~~~-------l--~vv~l~~~~F~H~GTs~E~L~~lt~~~~l~~~~~~~~~~ 268 (414)
T PF07959_consen 200 PENT--SNVLKEESELREARQKLWKLLRGTP-------L--NVVPLPNGKFYHFGTSREYLEHLTSDSELGIMRRKFSHS 268 (414)
T ss_pred cccc--CCCcchhHHHHHHHHHHHHHhhhcc-------c--cccccCCceEEEecCCHHHHHhhccCcccccceeeeecc
Confidence 1111 1223333445555544432211100 0 001111 12221 1 0111122222221 333344455
Q ss_pred EEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 009817 424 IVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 424 iIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
.....+.+..++.|.+|++.+. +.||++++|.+|.|+.+++||.+|+|.+.+
T Consensus 269 ~~~~~~~~~~~~~VinSil~~~-------------------~~vg~~svIe~s~l~~~~~IG~~cIisGv~ 320 (414)
T PF07959_consen 269 PATTPSDSEASSCVINSILEGG-------------------VSVGPGSVIEHSHLGGPWSIGSNCIISGVD 320 (414)
T ss_pred ccccccccCCCeeEEEeEecCC-------------------ceECCCCEEEeeecCCCCEECCCCEEECCc
Confidence 5555667778888888888887 888899999999999999999999999886
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=82.44 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=47.3
Q ss_pred CCCCCCCCccCCCeEEcC-eeeec-eEECCCCEECceEEeceEEcCCcEECCCCEE-eceEEeCCccccchhhHHhhhcC
Q 009817 384 KTPFYTSPRFLPPTKIDN-CRIKD-AIISHGCFLRECTVEHSIVGERSRLDYGVEL-KDTVMLGADYYQTESEIASLLAE 460 (524)
Q Consensus 384 ~~~i~~~~~i~p~~~i~~-~~i~~-siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I-~~s~i~~~~~~~~~~~~~~~~~~ 460 (524)
.+.|++++.++|+++|++ ++|.+ ++||+++.|++ +++|+++++|.-.++| +++.+++...++...+-...-+|
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~----~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge 78 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGD----GTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGE 78 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCCcEECC----CcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCC
Confidence 456888888888888864 33333 44444444442 2444444444444444 34555555555555554444444
Q ss_pred CccceEeCCCcEEe
Q 009817 461 GKVPIGVGRNTKIR 474 (524)
Q Consensus 461 g~~~~~Ig~~~~I~ 474 (524)
- .-+.||+|+.|+
T Consensus 79 ~-T~l~IG~~n~IR 91 (260)
T COG1043 79 P-TRLIIGDNNTIR 91 (260)
T ss_pred c-eEEEECCCCeEe
Confidence 2 225677777776
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.4e-06 Score=83.88 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=14.0
Q ss_pred CccceEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 461 GKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 461 g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
++.|+.||++|.|. +|.| +..||++|+|..
T Consensus 222 ~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGA 252 (319)
T TIGR03535 222 GKEVISIGERCLLGANSGL--GISLGDDCVVEA 252 (319)
T ss_pred CcccEEECCCcEECCCCEE--CeEECCCCEECC
Confidence 34555666555554 4444 334444444433
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-06 Score=80.08 Aligned_cols=97 Identities=21% Similarity=0.320 Sum_probs=56.0
Q ss_pred CCccCCCeEEcCeeeeceEECCCCEEC-ceEEec---eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccce
Q 009817 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI 465 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~---siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~ 465 (524)
++.+.||.++.-. .+..||++++|+ +|.+.+ ..||++|.|+++|.|.... .. ....+...- .+-.-|+
T Consensus 59 ~~~i~~~~~~~~g--~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~-h~----~~~~~~~~~-~~~~~~v 130 (183)
T PRK10092 59 EAYIEPTFRCDYG--YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTAT-HP----LDPVARNSG-AELGKPV 130 (183)
T ss_pred CEEEeCCEEEeec--CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCC-CC----CChHHcccc-ceecCCe
Confidence 4556666654210 256666776666 444432 3678888888777775321 00 011111100 0001258
Q ss_pred EeCCCcEE-eeeEECCCCEECCCcEEeCCC
Q 009817 466 GVGRNTKI-RNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 466 ~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
.||++++| .+|+|.++++||++++|..++
T Consensus 131 ~IGd~v~IG~~a~I~~gv~IG~~~vIgags 160 (183)
T PRK10092 131 TIGNNVWIGGRAVINPGVTIGDNVVVASGA 160 (183)
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCC
Confidence 88888888 578888888888888888774
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-06 Score=67.76 Aligned_cols=68 Identities=28% Similarity=0.495 Sum_probs=50.3
Q ss_pred eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEee---------eEECCCCEECCCcEEeCC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.|++++.|.+.+.++.+ +.|++++.|.+ +.|++++.||.+++|...
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~ 62 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG 62 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCC
Confidence 467888888888888764444433 78888888875 677888888887777654
Q ss_pred CCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 494 DEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 494 ~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+.|++++.|+++++|
T Consensus 63 ----------------~~ig~~~~i~~~s~v 77 (78)
T cd00208 63 ----------------VKIGDNAVIGAGAVV 77 (78)
T ss_pred ----------------CEECCCCEECcCcEe
Confidence 488888888888765
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-06 Score=79.41 Aligned_cols=17 Identities=18% Similarity=0.183 Sum_probs=10.8
Q ss_pred ceEEcCCcEECCCCEEe
Q 009817 422 HSIVGERSRLDYGVELK 438 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~ 438 (524)
+..||+++.|++++.|.
T Consensus 71 ~~~IG~~~~Ig~~~~I~ 87 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLY 87 (182)
T ss_pred eEEECCCeEECCCceec
Confidence 35666666666666664
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-06 Score=81.02 Aligned_cols=18 Identities=44% Similarity=0.457 Sum_probs=10.3
Q ss_pred eEECCCCEECCCcEEeCC
Q 009817 476 CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (524)
++||++|.||.+++|..+
T Consensus 132 i~IGd~v~IG~~~~I~~g 149 (203)
T PRK09527 132 ITIGNNVWIGSHVVINPG 149 (203)
T ss_pred eEECCCcEECCCCEEcCC
Confidence 455666666666655544
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=84.65 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=38.6
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 483 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~ 483 (524)
++.++++|.|.. +..+|.+++||+||+|. ++.|++- +-+-+..|+.||+||.|. |+.+..++.
T Consensus 138 gA~~~~gtMVd~----~as~G~~a~VGkn~higgGa~I~GV-----------Lep~~a~Pv~IgdncliGAns~~veGV~ 202 (271)
T COG2171 138 GAGTGEGTMVDG----RASVGSCAQVGKNSHIGGGASIGGV-----------LEPLQANPVIIGDNCLIGANSEVVEGVI 202 (271)
T ss_pred CcccCcceEEee----eeeeeccEEECCCcccCCcceEeEE-----------ecCCCCCCeEECCccEeccccceEeeeE
Confidence 466666666662 23445555555555553 2223321 112234678888888886 555555555
Q ss_pred ECCCcEEeCC
Q 009817 484 IGKDVVIVNK 493 (524)
Q Consensus 484 Ig~~~~i~~~ 493 (524)
+|++|+|..+
T Consensus 203 vGdg~VV~aG 212 (271)
T COG2171 203 VGDGCVVAAG 212 (271)
T ss_pred eCCCcEEecc
Confidence 5555555544
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.5e-06 Score=70.70 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=11.5
Q ss_pred eEeCCCcEEee-eEECCCCEECCCcEEe
Q 009817 465 IGVGRNTKIRN-CIIDKNVKIGKDVVIV 491 (524)
Q Consensus 465 ~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~ 491 (524)
+.|+.++.+.. +.|++++.|+.++.|.
T Consensus 61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 61 VVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred cEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 34444444432 4444444444444444
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-06 Score=84.59 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=57.6
Q ss_pred CCccCCCeEEcCeeeeceEECCCCEECc-eEE-eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEe
Q 009817 390 SPRFLPPTKIDNCRIKDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 467 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i~~siIg~g~~I~~-~~i-~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~I 467 (524)
.+|+.|++.+.. .+.|++|++|.. +.| -++.++.++.|+-++.+..+...|.. +.|
T Consensus 108 g~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn------------------~hi 165 (271)
T COG2171 108 GVRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN------------------SHI 165 (271)
T ss_pred ceeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC------------------ccc
Confidence 366666666542 477777777773 322 23444555555544444444433332 555
Q ss_pred CCCcEEe---------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 468 GRNTKIR---------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 468 g~~~~I~---------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
|-++.|. -++|++||.||+++.+.-+ +.+++| ++|..+++|..+|.
T Consensus 166 ggGa~I~GVLep~~a~Pv~IgdncliGAns~~veG---------V~vGdg-~VV~aGv~I~~~tk 220 (271)
T COG2171 166 GGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEG---------VIVGDG-CVVAAGVFITQDTK 220 (271)
T ss_pred CCcceEeEEecCCCCCCeEECCccEeccccceEee---------eEeCCC-cEEecceEEeCCcc
Confidence 5555554 4788999999999866643 444444 44555555555443
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-06 Score=90.78 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=63.1
Q ss_pred CCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECC----------
Q 009817 411 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK---------- 480 (524)
Q Consensus 411 ~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~---------- 480 (524)
+++.+.++.|.+|+|+++|+|+ +|.|++|+|+++ +.||++|.|.+|+|..
T Consensus 304 ~~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~-------------------~~Ig~~~~I~~sii~g~~~~~~~~~~ 363 (436)
T PLN02241 304 PPSKIEDCRITDSIISHGCFLR-ECKIEHSVVGLR-------------------SRIGEGVEIEDTVMMGADYYETEEEI 363 (436)
T ss_pred CCcEecCCeEEEeEEcCCcEEc-CeEEEeeEEcCC-------------------CEECCCCEEEEeEEECCCcccccccc
Confidence 4444455666679999999999 999999988888 8999999999988844
Q ss_pred ------C---CEECCCcEEeCCC--CCCCCCCceEEec-----CcEEEcCCCEeCCCc
Q 009817 481 ------N---VKIGKDVVIVNKD--EADRPELGFYIRS-----GITIIMEKATIEDGM 522 (524)
Q Consensus 481 ------~---~~Ig~~~~i~~~~--e~~~~~~~~~i~~-----g~~vv~~~~~i~~gt 522 (524)
+ ++||++++|.+.- +...+.++..|.. +.+++|+++.|++|+
T Consensus 364 ~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
T PLN02241 364 ASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGI 421 (436)
T ss_pred ccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCccccccccEEeCCE
Confidence 2 3799888887652 2333444444431 122445555555553
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.5e-06 Score=76.41 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=19.5
Q ss_pred eEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.| .++.||+||.||.++++...
T Consensus 125 ~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~ 154 (169)
T cd03357 125 VWIGGGVIILPGVTIGDNSVIGAGSVVTKD 154 (169)
T ss_pred EEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence 667777766 36677777777777776653
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.5e-06 Score=70.90 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=18.5
Q ss_pred eEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCC
Q 009817 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 407 siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
++|+++|.|+ ++.|. ++.|+.++.||++|.|.+...+.+
T Consensus 11 ~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~ 51 (119)
T cd03358 11 VFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTN 51 (119)
T ss_pred cEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEec
Confidence 4455555555 34442 344445555555555544444433
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.8e-06 Score=81.63 Aligned_cols=14 Identities=7% Similarity=0.012 Sum_probs=8.1
Q ss_pred CCCCCccCCCeEEc
Q 009817 387 FYTSPRFLPPTKID 400 (524)
Q Consensus 387 i~~~~~i~p~~~i~ 400 (524)
|+..++|+++++|+
T Consensus 163 I~p~A~IG~gv~Id 176 (294)
T PLN02694 163 IHPAAKIGKGILFD 176 (294)
T ss_pred eCCcceecCCEEEe
Confidence 45555666666664
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00021 Score=72.91 Aligned_cols=209 Identities=12% Similarity=0.209 Sum_probs=125.6
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc----CCC-eEEEEeccC-chhHHHHHHHhhhcC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTYFGN 166 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s----Gi~-~I~Ivt~~~-~~~l~~hl~~~y~~~ 166 (524)
+++.+|+||||.||||+ ..-||.|+||....+++|+.++++... |.+ -.+|.|.+. ++...+++.+ |...
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCC
Confidence 46789999999999995 468999999964449999999988652 322 567777765 4567777753 3111
Q ss_pred CcccCCCeEEEEcccc--------------CCCCCCCCc-ccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecccC
Q 009817 167 GTNFGDGFVEVLAATQ--------------TPGESGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMD 229 (524)
Q Consensus 167 ~~~~~~~~V~vl~~~q--------------~~~e~~~~~-~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~~d 229 (524)
...|.++.... ..+.....| +-|.++...... ..+++....+.+++.+.+.|.|...-
T Consensus 78 -----~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~ 152 (300)
T cd00897 78 -----NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATV 152 (300)
T ss_pred -----ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccC
Confidence 11122111000 000011122 246666544332 23444445688999999999976532
Q ss_pred HHHHHHHHHHcCCcEEEEEEEcCCCCCCcceE-EEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceee
Q 009817 230 YMDFIQSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308 (524)
Q Consensus 230 l~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~ 308 (524)
=-.++-.|.++++++++=+.+...+. +.-|. +..|..-+|.++.|-|.....+ .. +. ..-.+.++
T Consensus 153 Dp~~lg~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~-~~-~~-----------~~~~~~nt 218 (300)
T cd00897 153 DLRILNHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDE-FK-SI-----------KKFKIFNT 218 (300)
T ss_pred CHHHHHHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHh-hc-Cc-----------ccceEEEE
Confidence 24577888889999887555443321 23454 3445444577777776543210 00 00 01246789
Q ss_pred eEEEEeHHHHHHHHHh
Q 009817 309 GVYVFKKDVLFKLLRW 324 (524)
Q Consensus 309 GIYvf~~~vL~~ll~~ 324 (524)
+.+.|+-+.|.++++.
T Consensus 219 ~n~~~~l~~L~~~~~~ 234 (300)
T cd00897 219 NNLWVNLKAVKRVVEE 234 (300)
T ss_pred eEEEEEHHHHHHHHHh
Confidence 9999999999877654
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.1e-05 Score=70.29 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=12.9
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVEL 437 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I 437 (524)
.+.||+|++|.. +++|..+++||+++.|
T Consensus 13 ~a~IG~GtvI~~----gavV~~~a~IG~~~iI 40 (147)
T cd04649 13 GAYLAEGTTVMH----EGFVNFNAGTLGNCMV 40 (147)
T ss_pred CCEECCCcEECC----CCEEccCCEECCCeEE
Confidence 355555555552 1344444444444444
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=84.78 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 385 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
..+...+.+++++.|+. +.|. +++||+||.|+ ++.|.+|+|.++|+|++++.|.+|++..+
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~ 319 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN 319 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC
Confidence 44556666677777753 5554 59999999999 68999999999999999999999999999
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3e-05 Score=89.58 Aligned_cols=217 Identities=17% Similarity=0.161 Sum_probs=141.5
Q ss_pred eEEEEcCceecccC--HHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECCC--CcEEEEEecCCccccccccccccc
Q 009817 216 NVAILCGDHLYRMD--YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSL 291 (524)
Q Consensus 216 ~~Lvl~gD~l~~~d--l~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~~--g~V~~~~EKp~~~~~~~~~v~t~~ 291 (524)
.+||.+||.+..++ +.+ -.++|++......+.+-.++.|+...|.+ +++..+..||...+..++.-
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~---- 223 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSK---- 223 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhc----
Confidence 79999999977654 222 13467777777666666789999999987 78999999999876543321
Q ss_pred ccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC------CCchhhhhHHhhh----------hcCceEEEEec-Ce
Q 009817 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT------SNDFGSEIIPAAI----------MEHDVQAYIFR-DY 354 (524)
Q Consensus 292 ~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~------~~d~~~dii~~li----------~~~~V~~y~~~-~~ 354 (524)
....+.++|+|+|+.+....|++..+.. .-|+.+|++..+- +..++...... +.
T Consensus 224 ---------~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 224 ---------THLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred ---------CCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 1346789999999999887777654321 2255566655432 22445555554 56
Q ss_pred EeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEECc--eEEeceEEcCCcEEC
Q 009817 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE--CTVEHSIVGERSRLD 432 (524)
Q Consensus 355 w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~~--~~i~~siIg~~~~Ig 432 (524)
++.+||-..|+.....+-+... + ...+.....-..|+ +-|.||+++.+|.+++ +.|++|.|+.+++||
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~-----~-~~~i~~~~~~~~~~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVT-----D-QRRIMHRKVKPHPA----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhh-----h-hhhhhccccCCCCc----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 9999999999875554433210 0 00111111100111 2345899999999994 457999999999999
Q ss_pred CCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEEC
Q 009817 433 YGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 479 (524)
Q Consensus 433 ~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~ 479 (524)
+++.|.+.-..+-+ ..|.+++.|+-.=++
T Consensus 365 ~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl~ 393 (974)
T PRK13412 365 SRSIITGVPENSWN------------------LDLPEGVCIDVVPVG 393 (974)
T ss_pred CCcEEecccccccc------------------eecCCCcEEEEEEcC
Confidence 99999776433322 567777777654443
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=80.57 Aligned_cols=11 Identities=0% Similarity=-0.025 Sum_probs=4.6
Q ss_pred CCCccCCCeEE
Q 009817 389 TSPRFLPPTKI 399 (524)
Q Consensus 389 ~~~~i~p~~~i 399 (524)
+.+.|++++.|
T Consensus 146 ~~a~IG~g~~I 156 (273)
T PRK11132 146 PAAKIGRGIML 156 (273)
T ss_pred CcceECCCeEE
Confidence 33444444444
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=67.25 Aligned_cols=78 Identities=18% Similarity=0.378 Sum_probs=44.3
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~I 484 (524)
++.|+++|.|.. .....||++|.|++++.|.... ..+.. ....+.. -|+.||++|+|. +|+|..+++|
T Consensus 9 ~~~I~~~~~i~~--~~~i~IG~~~~I~~~~~I~~~~----h~~~~--~~~~~~~---~~v~Ig~~~~ig~~~~i~~g~~I 77 (107)
T cd05825 9 NSWIGEGVWIYN--LAPVTIGSDACISQGAYLCTGS----HDYRS--PAFPLIT---APIVIGDGAWVAAEAFVGPGVTI 77 (107)
T ss_pred CCEECCCCEEee--CCceEECCCCEECCCeEeecCC----CCCCc--Cccceec---CCEEECCCCEECCCCEECCCCEE
Confidence 345555555541 1246788888888887775320 00100 0001111 247788888884 6777777777
Q ss_pred CCCcEEeCCC
Q 009817 485 GKDVVIVNKD 494 (524)
Q Consensus 485 g~~~~i~~~~ 494 (524)
|+++.|..+.
T Consensus 78 g~~~~i~~gs 87 (107)
T cd05825 78 GEGAVVGARS 87 (107)
T ss_pred CCCCEECCCC
Confidence 7777777764
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=74.31 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=17.1
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
..||++++|. +|.|..+++||+++.|...
T Consensus 114 ~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~ 143 (162)
T TIGR01172 114 PTVGEGVMIGAGAKVLGNIEVGENAKIGAN 143 (162)
T ss_pred CEECCCcEEcCCCEEECCcEECCCCEECCC
Confidence 4566666663 5555556666666666655
|
Cysteine biosynthesis |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-05 Score=74.05 Aligned_cols=177 Identities=23% Similarity=0.248 Sum_probs=103.7
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
.|||+|-|..+|| .-|.|.+++|+ |||+|+++.+.++ .+++|+|.|.. +.+.+.+ +.| + ..
T Consensus 1 iaiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~-~~~-------g-~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIA-EEY-------G-AK 62 (217)
T ss_dssp EEEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHH-HHT-------T-SE
T ss_pred CEEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHH-HHc-------C-Ce
Confidence 3899999999999 56999999999 9999999999998 57999888854 4555444 332 3 22
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-cCHHHHHHHHHHcCCc-EEEEEEEc
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDAD-ITISCAAV 251 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad-~tl~~~~~ 251 (524)
|.+...... .++.... .+...+.. ...+.++.+.||.-+ + ..+.++++.+.+..++ +.-...+.
T Consensus 63 v~~~~~~~~---------~~~~r~~-~~~~~~~~---~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~ 129 (217)
T PF02348_consen 63 VIFRRGSLA---------DDTDRFI-EAIKHFLA---DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPV 129 (217)
T ss_dssp EEE--TTSS---------SHHHHHH-HHHHHHTC---STTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEE
T ss_pred eEEcChhhc---------CCcccHH-HHHHHhhh---hHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccc
Confidence 433332221 2343333 33332221 123478888999844 4 3579999999988876 32222232
Q ss_pred CC----CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHH
Q 009817 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD 316 (524)
Q Consensus 252 ~~----~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~ 316 (524)
.. .+. .--....++++....+.+.+.....+.. ... ...++...++|.++..
T Consensus 130 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 130 GSSVEIFNF-NPLKVLFDDDGLELYFSEHVIPYIRRNP-----------EEF-KYFYIRQVGIYAFRKE 185 (217)
T ss_dssp CSHHHHTST-TSTEEEECTTSBEEEEESSESSECHHHH-----------CSS-SSTEEEEEEEEEEEHH
T ss_pred cchhhcccc-cceEEEeccccchhhcccCCCccccccc-----------ccc-cccccccccccccccc
Confidence 21 111 1122344555566666665543321100 000 0125678999999997
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=79.46 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=9.5
Q ss_pred EcCCcEECCCCEEeceE
Q 009817 425 VGERSRLDYGVELKDTV 441 (524)
Q Consensus 425 Ig~~~~Ig~~~~I~~s~ 441 (524)
|-.++.||++|.|.+.+
T Consensus 221 InsGavIGhds~IG~ga 237 (341)
T TIGR03536 221 ISAGVMVGKGSDLGGGC 237 (341)
T ss_pred cccCCEECCCCEECCCC
Confidence 45556666666665433
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=72.74 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=18.4
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.|. ++.||+++.||.++++...
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 5666666664 4666666666666666654
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=81.81 Aligned_cols=91 Identities=11% Similarity=0.256 Sum_probs=52.1
Q ss_pred CCCCCCccCCCeEEcC---eeee-ceEECCCCEEC-ceEE---------eceEEcCCcEECCCCEEeceEEeCCccccch
Q 009817 386 PFYTSPRFLPPTKIDN---CRIK-DAIISHGCFLR-ECTV---------EHSIVGERSRLDYGVELKDTVMLGADYYQTE 451 (524)
Q Consensus 386 ~i~~~~~i~p~~~i~~---~~i~-~siIg~g~~I~-~~~i---------~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~ 451 (524)
.|++.++|+.+++|+. +.|. +++||++|.|. ++++ .+++||++|.||.|+.|-+.+.+++.
T Consensus 228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdg----- 302 (360)
T PLN02357 228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEG----- 302 (360)
T ss_pred eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCC-----
Confidence 3555566666666642 3332 35555555554 3333 24677777777777777554444432
Q ss_pred hhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC
Q 009817 452 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 452 ~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.||.++.|...+-...+.+|.-+.+.+..
T Consensus 303 -------------a~IGAgSVV~~dVP~~~~v~G~PArvv~~~ 332 (360)
T PLN02357 303 -------------AKIGAGSVVLKDVPPRTTAVGNPARLIGGK 332 (360)
T ss_pred -------------CEECCCCEECcccCCCcEEECCCeEEEccC
Confidence 677777777665555555566666666543
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=82.73 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=21.7
Q ss_pred hhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 009817 457 LLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~ 492 (524)
.+|++ |.||.|+.| .++.||+|+.||.|++|..
T Consensus 259 ~IGd~---V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 259 KIGDG---ALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred EECCC---CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 34444 666666666 4677777777777777764
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0039 Score=69.47 Aligned_cols=218 Identities=13% Similarity=0.153 Sum_probs=124.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhc-----------CC-CeEEEEeccC-chhH
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-----------GI-NKIFVLTQFN-SASL 155 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~s-----------Gi-~~I~Ivt~~~-~~~l 155 (524)
..++..|.||||.||||+ ..-||.++|++ |+ +++|..++.+... +. =-.+|.|.++ .+..
T Consensus 126 l~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 126 AGNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred hCcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 367889999999999996 45789999984 77 9999999987653 11 2467888865 4556
Q ss_pred HHHHHH-hhhcCCcccCCCeEEEEcccc------CCC----CC----CCC-cccCcHHHHHHHH--HHHHhhhcCCCCeE
Q 009817 156 NRHIAR-TYFGNGTNFGDGFVEVLAATQ------TPG----ES----GKN-WFQGTADAVRQFT--WVFEDAKNRNIENV 217 (524)
Q Consensus 156 ~~hl~~-~y~~~~~~~~~~~V~vl~~~q------~~~----e~----~~~-~~~Gta~al~~a~--~~i~~~~~~~~e~~ 217 (524)
.+++.+ .||+.. ...|.++.... ..+ +. .-. .+-|.++...... ..+++....+.+++
T Consensus 202 ~~~~~~n~~FGl~----~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi 277 (615)
T PLN02830 202 LKLLERNDYFGMD----PDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWV 277 (615)
T ss_pred HHHHHHCCccCCC----ccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEE
Confidence 667653 234321 11222221000 000 00 001 2246665443332 33555555788999
Q ss_pred EEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEE--CCCCc----EEEEEecCCcccccccccccc
Q 009817 218 AILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR----IAQFAEKPSGANLKAMQVDTS 290 (524)
Q Consensus 218 Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~i--d~~g~----V~~~~EKp~~~~~~~~~v~t~ 290 (524)
.+.+.|... ....-.++-.+...+.++..-+.+... .+.-|++.. ..+|+ ++++.|.+..... .+....
T Consensus 278 ~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~--a~~p~g 353 (615)
T PLN02830 278 VFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLRA--TGHPDG 353 (615)
T ss_pred EEEeccchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHHh--ccCCCc
Confidence 999999833 333478888888899998877766543 234565543 23344 3355555432111 111000
Q ss_pred cccCCccccccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 291 LLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 291 ~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
-+..... + +.+=.+++...++-+.+.++|+.
T Consensus 354 ~l~~~~~-~--s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 354 DVNDETG-Y--SPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccccccc-c--ccCCCCceeeEeeHHHHHHHHHh
Confidence 0000000 1 12224888888998888777764
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=80.81 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.||++++|. ++.|..|++||++++|..++
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGS 288 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAGS 288 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCCC
Confidence 5677777774 66666667777777776664
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0002 Score=76.43 Aligned_cols=215 Identities=19% Similarity=0.314 Sum_probs=122.9
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHh----cCCC-eEEEEeccC-chhHHHHHHHhhhc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQFN-SASLNRHIARTYFG 165 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~----sGi~-~I~Ivt~~~-~~~l~~hl~~~y~~ 165 (524)
.+++..|+||||.||||+ ..-||.|+||.....++|..++++.. .|.+ -.+|.|.++ .++..+++.+ |++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg 129 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFG 129 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCG
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcC
Confidence 567889999999999996 46899999996544899988888765 2432 457777765 5678888865 865
Q ss_pred CCccc---CCCeEEEEccccC-CC-C------CCCCc-ccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecccCHH
Q 009817 166 NGTNF---GDGFVEVLAATQT-PG-E------SGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYM 231 (524)
Q Consensus 166 ~~~~~---~~~~V~vl~~~q~-~~-e------~~~~~-~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~~dl~ 231 (524)
..... .-+.+..+..+.. +- . +...| +-|.|+...... ..++++...+.+++.+.+.|.|...-=.
T Consensus 130 ~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp 209 (420)
T PF01704_consen 130 LDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP 209 (420)
T ss_dssp SSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H
T ss_pred CCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH
Confidence 43221 0011111211100 00 0 01123 247776444332 2455555578899999999997654334
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCCcceEE-EECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeE
Q 009817 232 DFIQSHVDRDADITISCAAVGESRASDYGLV-KIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (524)
Q Consensus 232 ~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v-~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GI 310 (524)
.++-.+.++++++.+-+.+...+. ..-|.+ ..|..-++.++.+-|.... .+... .....+.++|-
T Consensus 210 ~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~-~~~~~------------~~~~~~FntnN 275 (420)
T PF01704_consen 210 VFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHM-AEFKD------------IKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGH-HHHTS------------TTTSBEEEEEE
T ss_pred HHHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHH-Hhhhc------------cccceEEEece
Confidence 578888889999887777654322 234543 3433233444444443211 00000 00124568888
Q ss_pred EEEeHHHHHHHHHh
Q 009817 311 YVFKKDVLFKLLRW 324 (524)
Q Consensus 311 Yvf~~~vL~~ll~~ 324 (524)
-.|+-+.|.++++.
T Consensus 276 i~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 276 IWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEHHHHHHHHHT
T ss_pred eeEEHHHHHHHHHh
Confidence 89999999888765
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.9e-06 Score=72.03 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=28.7
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTV 441 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~ 441 (524)
.+||.+||.|+ +.+-++.||..|.|++++.|+..+
T Consensus 39 KtIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~ 73 (184)
T KOG3121|consen 39 KTIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPM 73 (184)
T ss_pred cEEEeeCcEEe-cccccceEcceEEeccccccCCch
Confidence 48899999998 466678888888888888887755
|
|
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00015 Score=78.34 Aligned_cols=212 Identities=16% Similarity=0.245 Sum_probs=125.3
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhc--------------CC-CeEEEEeccC-ch
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GI-NKIFVLTQFN-SA 153 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~s--------------Gi-~~I~Ivt~~~-~~ 153 (524)
.++.+|+||||.||||+ ..-||.|++|+ ++ .|++...+++... +. =..+|.|.+. .+
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 67889999999999996 46899999885 77 9999999886431 11 1447788764 55
Q ss_pred hHHHHHHH-hhhcCCcccCCCeEEEEccccCC--CCCC----------CCcccCcHHHHHHHHH--HHHhhhcCCCCeEE
Q 009817 154 SLNRHIAR-TYFGNGTNFGDGFVEVLAATQTP--GESG----------KNWFQGTADAVRQFTW--VFEDAKNRNIENVA 218 (524)
Q Consensus 154 ~l~~hl~~-~y~~~~~~~~~~~V~vl~~~q~~--~e~~----------~~~~~Gta~al~~a~~--~i~~~~~~~~e~~L 218 (524)
...+++.+ .||+-. ...|.++.....| ...+ .-.+-|.++....... .+++....+.+++.
T Consensus 191 ~T~~ff~~~~~FGl~----~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~ 266 (493)
T PLN02435 191 ATRKFFESHKYFGLE----ADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVD 266 (493)
T ss_pred HHHHHHHhCCCCCCC----ccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEE
Confidence 67777753 334421 1123332211100 0000 0112477775554432 45555567889999
Q ss_pred EEcCcee-cccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEE-CCCCc--EEEEEecCCcccccccccccccccC
Q 009817 219 ILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGR--IAQFAEKPSGANLKAMQVDTSLLGF 294 (524)
Q Consensus 219 vl~gD~l-~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~i-d~~g~--V~~~~EKp~~~~~~~~~v~t~~~~l 294 (524)
+.+.|.+ ...---.++-.+...+.++..-+.+...+. +.-|++.. +.+|+ |+++.|-+...... ..-++..|
T Consensus 267 v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~-EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~-~~~~~g~L-- 342 (493)
T PLN02435 267 CYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ-EKVGVFVRRGKGGPLTVVEYSELDQAMASA-INQQTGRL-- 342 (493)
T ss_pred EEecccccccccCHHHHHHHHhcCCceEEEeeecCCCC-CceeEEEEecCCCCEEEEEeccCCHHHHhc-cCcccccc--
Confidence 9999995 444335677788888998877655443221 34565543 34454 66666644322110 00011111
Q ss_pred CccccccCCcceeeeEEEEeHHHHHHHHH
Q 009817 295 SPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (524)
Q Consensus 295 ~~~~~~~~~~l~~~GIYvf~~~vL~~ll~ 323 (524)
.-...+++.++|+-++|.++.+
T Consensus 343 -------~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 -------RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred -------ccchhhHHHhhccHHHHHHHHH
Confidence 2356788999999999988653
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.8e-05 Score=72.49 Aligned_cols=67 Identities=25% Similarity=0.408 Sum_probs=43.0
Q ss_pred eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
.+||+-+.||++|.|...+.+|+.--+ ...+.=.++++ +.||.|++| +|-.||+|++||+|+++...
T Consensus 88 vVIgeta~IGddv~I~~gVTLGgtg~~-~g~RhPtIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlkd 155 (194)
T COG1045 88 VVIGETAVIGDDVTIYHGVTLGGTGKE-SGKRHPTIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLKD 155 (194)
T ss_pred EEEcceeEECCCeEEEcceEecCCCCc-CCCCCCccCCC---eEECCCCEEEcceEECCCCEECCCceEccC
Confidence 345555555555555444444431000 01234466777 899999988 68999999999999999875
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.5e-05 Score=66.62 Aligned_cols=19 Identities=5% Similarity=0.118 Sum_probs=12.0
Q ss_pred eeEECCCCEECCCcEEeCC
Q 009817 475 NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~ 493 (524)
.++|+++|.||.++.|...
T Consensus 56 ~v~Ig~~~~ig~~~~i~~g 74 (107)
T cd05825 56 PIVIGDGAWVAAEAFVGPG 74 (107)
T ss_pred CEEECCCCEECCCCEECCC
Confidence 4566666666666666654
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.5e-05 Score=71.98 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=58.4
Q ss_pred ccCCCeEEcC-eee---eceEECCCCEECceEEeceEEcCCcEECCCCEEe--ceEEeCCccccchhhHHhhhcCCccce
Q 009817 392 RFLPPTKIDN-CRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELK--DTVMLGADYYQTESEIASLLAEGKVPI 465 (524)
Q Consensus 392 ~i~p~~~i~~-~~i---~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~--~s~i~~~~~~~~~~~~~~~~~~g~~~~ 465 (524)
.+.||.++.. ..| .++.|+.+|.+.--......||+++.|++++.|. ..+.+|++ +
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~------------------v 92 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD------------------T 92 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC------------------C
Confidence 5566776642 222 2455666666531011236788888888888775 34444443 5
Q ss_pred EeCCCcEEe----------------------------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCE
Q 009817 466 GVGRNTKIR----------------------------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKAT 517 (524)
Q Consensus 466 ~Ig~~~~I~----------------------------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~ 517 (524)
.|++++.|. .++||+++.||.++.|... ++||++++
T Consensus 93 ~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g----------------~~Ig~~~~ 156 (192)
T PRK09677 93 LIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPG----------------VSIGNGCI 156 (192)
T ss_pred EECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCC----------------CEECCCCE
Confidence 666666553 3567777777777777765 36666666
Q ss_pred eCCCccc
Q 009817 518 IEDGMVI 524 (524)
Q Consensus 518 i~~gtvI 524 (524)
|++|++|
T Consensus 157 Iga~s~v 163 (192)
T PRK09677 157 VGANSVV 163 (192)
T ss_pred ECCCCEE
Confidence 6666543
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.3e-05 Score=66.18 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=12.9
Q ss_pred eEeCCCcEE-eeeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||+++.| .+++|.+++.||+++.|..
T Consensus 59 ~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~ 87 (109)
T cd04647 59 IVIGDDVWIGANVVILPGVTIGDGAVVGA 87 (109)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECC
Confidence 444444444 3444444444444444443
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.7e-05 Score=71.32 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=25.3
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.||+++.|. +|.|..+++||+++.|..+.
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags 123 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGS 123 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCC
Confidence 6889988885 78888888888888888875
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.7e-05 Score=76.00 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=17.6
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.|+.| +..||+||.||.|+++..+
T Consensus 232 ~~IGagA~I-GI~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 232 CLLGANSGL-GISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred cEECCCCEE-CeEECCCCEECCCCEEeCC
Confidence 566666666 5666666666666666655
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.6e-05 Score=64.43 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=34.5
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcE---EeeeEECCCCE
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK---IRNCIIDKNVK 483 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~---I~~~iI~~~~~ 483 (524)
+.|+++++|... .+++||+++.||++|.|.+ + +.|++++. ++.++|++++.
T Consensus 9 ~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~-----~-------------------~~i~~~~~~~~~~~~~Ig~~~~ 62 (101)
T cd03354 9 AKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQ-----G-------------------VTLGGKGKGGGKRHPTIGDNVV 62 (101)
T ss_pred CEECCCEEECCC--CeEEECCCCEECCCCEEcC-----C-------------------CEECCCccCCcCCCCEECCCcE
Confidence 444444444421 1356677777776666532 2 44444453 45677777777
Q ss_pred ECCCcEEeCC
Q 009817 484 IGKDVVIVNK 493 (524)
Q Consensus 484 Ig~~~~i~~~ 493 (524)
|+.++.+...
T Consensus 63 Ig~~~~i~~~ 72 (101)
T cd03354 63 IGAGAKILGN 72 (101)
T ss_pred EcCCCEEECc
Confidence 7777777654
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.5e-05 Score=71.92 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=18.8
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.++.|. ++.||+++.||.++++..
T Consensus 136 v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 136 VWIGGRAVINPGVTIGDNVVVASGAVVTK 164 (183)
T ss_pred cEECCCCEECCCCEECCCCEECCCCEEcc
Confidence 6677777663 567777777777776664
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.8e-05 Score=68.22 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.3
Q ss_pred ceEEcCCcEECCCCEEece
Q 009817 422 HSIVGERSRLDYGVELKDT 440 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~~s 440 (524)
.+.||++|.|++++.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 5788888888888888654
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00066 Score=69.66 Aligned_cols=212 Identities=12% Similarity=0.180 Sum_probs=121.6
Q ss_pred eEEEEeCCCCCcccCCccCCCccceee---cCcchhHHHHHHHHHhcC--------C-CeEEEEeccC-chhHHHHHHH-
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINSG--------I-NKIFVLTQFN-SASLNRHIAR- 161 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~sG--------i-~~I~Ivt~~~-~~~l~~hl~~- 161 (524)
.+|+||||.||||+ ..-||-++|| .|+ +++|+.++++.... . =-.+|.|.+. .++..+++.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47999999999996 4689999999 478 99999999886532 1 2457888765 4567777753
Q ss_pred hhhcCCcccCCCeEEEE--------ccccCCC--CCCCCc-----ccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCce
Q 009817 162 TYFGNGTNFGDGFVEVL--------AATQTPG--ESGKNW-----FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDH 224 (524)
Q Consensus 162 ~y~~~~~~~~~~~V~vl--------~~~q~~~--e~~~~~-----~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~ 224 (524)
.||+-. ...|.++ ...+..- .....| +-|.++...... ..+++....+.+++.+..-|.
T Consensus 78 ~yFGl~----~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN 153 (315)
T cd06424 78 NYFGLE----KDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTN 153 (315)
T ss_pred CccCCC----cccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecch
Confidence 334321 1123222 1000000 000111 347776544332 234444457889999998887
Q ss_pred ec-ccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEE-C-CCCc--E--EEEEecCCcccc---cccccccccccC
Q 009817 225 LY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-D-NMGR--I--AQFAEKPSGANL---KAMQVDTSLLGF 294 (524)
Q Consensus 225 l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~i-d-~~g~--V--~~~~EKp~~~~~---~~~~v~t~~~~l 294 (524)
.. ..-.--++-.+...++++...+.+.... +.-|++.. + .+|+ | +++.|=+..... ....++. ..++
T Consensus 154 ~L~~~adP~fiG~~~~~~~d~~~k~v~~~~~--E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~ 230 (315)
T cd06424 154 ALAFKAIPAVLGVSATKSLDMNSLTVPRKPK--EAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGF 230 (315)
T ss_pred hhhhccChhhEEEEecCCCceEeEEEeCCCC--CceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-cccc
Confidence 44 4334455556677788887666554332 45675542 2 2333 4 666654421110 0000100 1112
Q ss_pred CccccccCCcceeeeEEEEeHHHHHHHHHhh
Q 009817 295 SPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (524)
Q Consensus 295 ~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~ 325 (524)
+.+-.++++++|+-+.+.+.++..
T Consensus 231 -------s~f~gNi~~~~f~l~~~~~~l~~~ 254 (315)
T cd06424 231 -------SPFPGNINQLVFSLGPYMDELEKT 254 (315)
T ss_pred -------ccCCCeeeeEEEeHHHHHHHHhhc
Confidence 235679999999999888777653
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00038 Score=66.88 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=80.7
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCch--hHHHHHHHhhhcCCcc
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSA--SLNRHIARTYFGNGTN 169 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~--~l~~hl~~~y~~~~~~ 169 (524)
.++.+||-|-=.+||| .-|.|+|+++. |||+++|+++.++ -+++|+|.|....+ .|..+.. .
T Consensus 2 ~~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~-~------- 66 (241)
T COG1861 2 SMILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR-S------- 66 (241)
T ss_pred CcEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHH-H-------
Confidence 3455555555556777 45999999999 9999999999998 57999999987654 2433332 1
Q ss_pred cCCCeEEEEccccCCCCCCCCcccCcH-HHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccCH-HHHHHHHHHcCCcE
Q 009817 170 FGDGFVEVLAATQTPGESGKNWFQGTA-DAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQSHVDRDADI 244 (524)
Q Consensus 170 ~~~~~V~vl~~~q~~~e~~~~~~~Gta-~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~dl-~~ll~~h~~~~ad~ 244 (524)
.| +.|+ +|.. +.|.++...++. .+.+.++=+.||. +.+..+ ..+++.|.++++|.
T Consensus 67 ~G---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 67 HG---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred cC---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 22 3333 2554 455556655552 3446788889999 556554 77889999998874
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0012 Score=62.23 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=62.0
Q ss_pred CCccceeecC--cchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcc
Q 009817 115 AATPAVPVAG--CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (524)
Q Consensus 115 ~PKpLlpIgG--k~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~ 192 (524)
.+|+|++++| + |||+++++.+. +.+++|+|+++.. +. |. .++ +.++.. ... .
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~-~~--------~~----~~~---~~~i~d-~~~-------g 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPG-QP--------LP----ELP---APVLRD-ELR-------G 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCC-cc--------cc----cCC---CCEecc-CCC-------C
Confidence 5899999999 9 99999999765 5689999999764 21 10 111 334432 221 1
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHHHHHc
Q 009817 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDR 240 (524)
Q Consensus 193 ~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~h~~~ 240 (524)
+|...++..++..... ...+.++++.||+ +...+ +..+++.+...
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 4666666655544321 2358999999999 33444 56777655433
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00016 Score=68.64 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=53.5
Q ss_pred ceEECCCCEEC-ceEE---eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECC
Q 009817 406 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDK 480 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i---~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~ 480 (524)
+..||..|+++ ++.+ .+..||.++.|+++|.|... ..-....+.......+.-|+.||++++|. +++|.+
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~-----~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~Ilp 141 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN-----SHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILP 141 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC-----CCCCChhhcccCCceecCCeEECCCeEEcCccEECC
Confidence 56777777777 4432 23456666666666666543 11111122221113334479999999995 899999
Q ss_pred CCEECCCcEEeCCC
Q 009817 481 NVKIGKDVVIVNKD 494 (524)
Q Consensus 481 ~~~Ig~~~~i~~~~ 494 (524)
+++||+|++|..++
T Consensus 142 GV~IG~gavigags 155 (190)
T COG0110 142 GVTIGEGAVIGAGS 155 (190)
T ss_pred CEEECCCcEEeeCC
Confidence 99999999999886
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.6e-05 Score=78.73 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=30.1
Q ss_pred ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+|.||+++.||++|+|.+.+.+.+ +.+-.+ ..++.++.|+.|++|.|+.||.+++|.+.
T Consensus 276 ~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~---~~~~~~s~i~s~ivg~~~~IG~~~~id~~ 334 (371)
T KOG1322|consen 276 NCSIGPNVVIGPRVRIEDGVRLQD----------STILGA---DYYETHSEISSSIVGWNVPIGIWARIDKN 334 (371)
T ss_pred ccEECCCceECCCcEecCceEEEe----------eEEEcc---ceechhHHHHhhhccccccccCceEEecc
Confidence 455555555555555555554444 112222 24444455555556666666666555554
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0031 Score=67.21 Aligned_cols=212 Identities=17% Similarity=0.320 Sum_probs=124.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeec-CcchhHHHHHHHHHhc----CCC-eEEEEeccCchhHHHHH-HHhhh
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHI-ARTYF 164 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~s----Gi~-~I~Ivt~~~~~~l~~hl-~~~y~ 164 (524)
-.++.+|+||||.||||+- .-||.+++|. |+ +++|.+++.+..+ +++ ..+|.+..+.++-..++ ...|+
T Consensus 103 ~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~ 178 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF 178 (472)
T ss_pred cCceEEEEecCCccccccc---CCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc
Confidence 4678899999999999974 4799999999 77 9999998887653 443 56778888875544443 35665
Q ss_pred cC-Cccc---CCCeEE-EEccccCC---CCCC-CCcc-cCcHHHHHHHHH--HHHhhhcCCCCeEEEEcCceecc-cCHH
Q 009817 165 GN-GTNF---GDGFVE-VLAATQTP---GESG-KNWF-QGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYR-MDYM 231 (524)
Q Consensus 165 ~~-~~~~---~~~~V~-vl~~~q~~---~e~~-~~~~-~Gta~al~~a~~--~i~~~~~~~~e~~Lvl~gD~l~~-~dl~ 231 (524)
+. ..++ .-..+. ++..+..+ .+.. ..|+ -|+++-...... .+++....+.+.+.|.+.|.|.- .| -
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD-~ 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVD-L 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccC-H
Confidence 53 1111 000011 11110000 0001 1233 566654332222 34444446889999999999653 34 3
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCCcceEEE-ECCCCcEEEEEecCCcccccccccccccccCCccccccCCccee-ee
Q 009817 232 DFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MG 309 (524)
Q Consensus 232 ~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~-id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~-~G 309 (524)
.++.++...+.+.++=+...... ..+-|++. .|..-+|+++.|-|.....+-+ -+ + .......+ .+
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~-s~--------~--~~~~~n~Nni~ 325 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFT-SD--------G--KLKYFNTNNIW 325 (472)
T ss_pred HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhc-cc--------c--ceeeeccccce
Confidence 56778888888876654432221 14566654 8888899999988764221000 00 0 00112334 77
Q ss_pred EEEEeHHHHHH
Q 009817 310 VYVFKKDVLFK 320 (524)
Q Consensus 310 IYvf~~~vL~~ 320 (524)
+|+++.+.+.+
T Consensus 326 l~~~~~~~l~~ 336 (472)
T COG4284 326 LHLFSVKFLKE 336 (472)
T ss_pred eehhHHHHHHh
Confidence 88888887754
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0002 Score=81.52 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=47.6
Q ss_pred ceEECCCCEECceEE---eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCC
Q 009817 406 DAIISHGCFLRECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (524)
Q Consensus 406 ~siIg~g~~I~~~~i---~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~ 481 (524)
.+.||+||.|....+ ....||++|.|+++|.|.+..+.++. +--| |+.||+||.|. +|+|.+|
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~-----------l~~g--~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGR-----------LHTG--PVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCc-----------eeec--CcEECCCcEECCCCEEcCC
Confidence 456667777664222 23567888888887777653322110 0011 37888888884 7888888
Q ss_pred CEECCCcEEeCCC
Q 009817 482 VKIGKDVVIVNKD 494 (524)
Q Consensus 482 ~~Ig~~~~i~~~~ 494 (524)
++||++++|..++
T Consensus 179 ~~Igd~a~vgagS 191 (695)
T TIGR02353 179 TSIGDGAQLGHGS 191 (695)
T ss_pred CEECCCCEECCCC
Confidence 8888888887764
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00031 Score=79.90 Aligned_cols=89 Identities=15% Similarity=0.325 Sum_probs=58.0
Q ss_pred ceEECCCCEECceEE-e--ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCC
Q 009817 406 DAIISHGCFLRECTV-E--HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 481 (524)
Q Consensus 406 ~siIg~g~~I~~~~i-~--~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~ 481 (524)
.+.||++|.|+...+ + .+.||++|.|+++|.|+.. .+.+..+ -.+ ++.||++|.|. +|+|.++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h-~~~~~~~---------~~~---~v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTH-LFEDRVM---------KSD---TVTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEec-ccccccc---------ccC---CeEECCCCEECCCCEECCC
Confidence 466677777764222 1 2689999999999988652 2222111 111 27888888885 6888888
Q ss_pred CEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 482 VKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 482 ~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
++||++++|...+ +|.++..|++|++
T Consensus 664 ~~IGd~a~Ig~~S----------------vV~~g~~vp~~s~ 689 (695)
T TIGR02353 664 VVMGEGSVLGPDS----------------LVMKGEEVPAHTR 689 (695)
T ss_pred CEECCCCEECCCC----------------EEcCCcccCCCCE
Confidence 8888888887763 5666666666664
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00035 Score=66.01 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=51.8
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe---eeEECCC
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR---NCIIDKN 481 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~---~~iI~~~ 481 (524)
.+.||.|.+|.+ |.++.||+-|+|+ |+.|+.+ +++|..-.=. .=.||+|
T Consensus 73 ~A~IG~g~fIdH--------g~GvVIgeta~IGddv~I~~g-------------------VTLGgtg~~~g~RhPtIg~~ 125 (194)
T COG1045 73 GAKIGRGLFIDH--------GTGVVIGETAVIGDDVTIYHG-------------------VTLGGTGKESGKRHPTIGNG 125 (194)
T ss_pred CCeECCceEEcC--------CceEEEcceeEECCCeEEEcc-------------------eEecCCCCcCCCCCCccCCC
Confidence 455677777775 6788888888885 4445555 5555433322 3477888
Q ss_pred CEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 482 VKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 482 ~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+.||.|+.|.+. ..||+|+.|++|+||
T Consensus 126 V~IGagAkILG~----------------I~IGd~akIGA~sVV 152 (194)
T COG1045 126 VYIGAGAKILGN----------------IEIGDNAKIGAGSVV 152 (194)
T ss_pred eEECCCCEEEcc----------------eEECCCCEECCCceE
Confidence 888888888765 577777777777765
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00059 Score=65.50 Aligned_cols=31 Identities=35% Similarity=0.466 Sum_probs=20.0
Q ss_pred cceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 463 VPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 463 ~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
.| .||+|+.|. .+.|-.|+.||+|++|..++
T Consensus 200 hP-~Igd~vliGaGvtILgnV~IGegavIaAGs 231 (269)
T KOG4750|consen 200 HP-KIGDNVLIGAGVTILGNVTIGEGAVIAAGS 231 (269)
T ss_pred CC-cccCCeEEccccEEeCCeeECCCcEEeccc
Confidence 45 777777775 44555567777777776664
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0013 Score=63.44 Aligned_cols=75 Identities=25% Similarity=0.398 Sum_probs=45.8
Q ss_pred CCeEEcCeee---eceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCc
Q 009817 395 PPTKIDNCRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (524)
Q Consensus 395 p~~~i~~~~i---~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~ 471 (524)
|+|.++.+.+ .+.+||+++.|+- .++|....+|+++.|.+.++-++ +.|+..|
T Consensus 8 p~Tr~e~~~ivv~gdViIG~nS~l~~-----~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~ 63 (277)
T COG4801 8 PNTRVEEAIIVVKGDVIIGKNSMLKY-----GVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWC 63 (277)
T ss_pred CCCceeeeeEEEeccEEEcccceeee-----eeeeeeEEeccCcEEeeeEEecc-------------------eeeeeee
Confidence 4455544333 3677777777763 46666666666666666666544 6666666
Q ss_pred EE-eeeEECCCCEECCCcEEeCC
Q 009817 472 KI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 472 ~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
.+ .|.++.+++.||+.+.|.+.
T Consensus 64 kv~gNV~ve~dayiGE~~sI~gk 86 (277)
T COG4801 64 KVTGNVIVENDAYIGEFSSIKGK 86 (277)
T ss_pred EeeccEEEcCceEEeccceeeee
Confidence 66 36666666666666666544
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00042 Score=61.87 Aligned_cols=21 Identities=5% Similarity=0.085 Sum_probs=12.0
Q ss_pred eEEcCCcEECCCCEEeceEEe
Q 009817 423 SIVGERSRLDYGVELKDTVML 443 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~ 443 (524)
..||+++.|+++|.+.-+-|.
T Consensus 85 ~hiGdhVFieE~cVVnAAqIg 105 (184)
T KOG3121|consen 85 VHIGDHVFIEEECVVNAAQIG 105 (184)
T ss_pred eeecceEEEecceEeehhhhe
Confidence 456666666666665543333
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00087 Score=64.37 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=16.8
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
+.||+|-.+.++ ...+||+-..||.+|.|-..+-+++
T Consensus 155 a~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlgg 191 (269)
T KOG4750|consen 155 AKIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGG 191 (269)
T ss_pred hhcccceeeccc--cceeecceeEeccceeeecceeecc
Confidence 344455555422 1245555555555555544444443
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0035 Score=57.31 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=17.2
Q ss_pred ceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 464 ~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
++.||++|+|. +|+|..+++||++++|..+
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgag 103 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAG 103 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCC
Confidence 36666666663 5555555555555555554
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0023 Score=57.69 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=36.2
Q ss_pred CCCccCCCeEE-cCeeee-ceEECCCCEECc-eEEe----ceEEcCCcEECCCCEEec
Q 009817 389 TSPRFLPPTKI-DNCRIK-DAIISHGCFLRE-CTVE----HSIVGERSRLDYGVELKD 439 (524)
Q Consensus 389 ~~~~i~p~~~i-~~~~i~-~siIg~g~~I~~-~~i~----~siIg~~~~Ig~~~~I~~ 439 (524)
++..|.|.+.+ .++.|+ +.+|++||++.. +.+. --+||+++.|++-+.|.+
T Consensus 7 ~svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 7 TSVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred ceeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 34556666655 445563 799999999984 3332 248999999999888876
|
|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.13 Score=53.91 Aligned_cols=355 Identities=16% Similarity=0.202 Sum_probs=174.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc----CCC-eEEEEeccCchhHHHHHHHhhhcC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLNRHIARTYFGN 166 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s----Gi~-~I~Ivt~~~~~~l~~hl~~~y~~~ 166 (524)
.+++..+=|-||.||-|+ -.-||.+++|-+-+..+|-.+.+..+. +++ -.++...++-++--..+.+.|.+.
T Consensus 101 L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~ 177 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS 177 (498)
T ss_pred hhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC
Confidence 356677889999999997 457999999976658887776665543 333 345667777655444554666443
Q ss_pred Cc--------ccCCCeE-EEEccccCCCC-CCCCcc-cCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecc-cCHHH
Q 009817 167 GT--------NFGDGFV-EVLAATQTPGE-SGKNWF-QGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR-MDYMD 232 (524)
Q Consensus 167 ~~--------~~~~~~V-~vl~~~q~~~e-~~~~~~-~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~-~dl~~ 232 (524)
.+ +|.+-.. +.++.....++ +.+.|| -|+++-..... ..++.+-..+.|.++|.+.|.+-. .|+ .
T Consensus 178 kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~ 256 (498)
T KOG2638|consen 178 KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-N 256 (498)
T ss_pred ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-H
Confidence 32 2221111 12322221111 234676 46665333221 223322235779999999999875 454 4
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCc-c-eEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeE
Q 009817 233 FIQSHVDRDADITISCAAVGESRASD-Y-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (524)
Q Consensus 233 ll~~h~~~~ad~tl~~~~~~~~~a~~-~-g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GI 310 (524)
+++...+.+.+..+=+.+.. ++.- - .++..+..=|..++..-|.....+=+ +. +.-.+.+++-
T Consensus 257 ILn~~i~~~~ey~MEvTdKT--~aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFk-------S~------kkFkifNTNN 321 (498)
T KOG2638|consen 257 ILNHVINNNIEYLMEVTDKT--RADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFK-------SI------KKFKIFNTNN 321 (498)
T ss_pred HHHHHhcCCCceEEEecccc--hhhcccceEEeecCEEEEEEeccCChhHhhhhc-------cc------eeEEEeccCC
Confidence 55656666677666554432 2311 1 23444433344555555543210000 00 0112344444
Q ss_pred EEEeHHHHHHHHHhhCCCC--------Cchhhhh------HHhhhhc-CceEEEEec-CeEeecCCHHHHHHHHHHhhcc
Q 009817 311 YVFKKDVLFKLLRWRYPTS--------NDFGSEI------IPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 311 Yvf~~~vL~~ll~~~~~~~--------~d~~~di------i~~li~~-~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~~ 374 (524)
--++-..+.++++...-.. -+...++ +..+++. .+-.+..+. ..+..+-|-.|++-....|-.-
T Consensus 322 lWinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~l 401 (498)
T KOG2638|consen 322 LWINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDL 401 (498)
T ss_pred eEEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeec
Confidence 4445555666666532110 0111111 1222222 122222222 3455566666665544433221
Q ss_pred C-CCccccCCCCCCCCCCccCCCeEEcC--eeeec--eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCcccc
Q 009817 375 S-PAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQ 449 (524)
Q Consensus 375 ~-~~~~~~~~~~~i~~~~~i~p~~~i~~--~~i~~--siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~ 449 (524)
. ..+.. +|.....+.+. ++++. .+|.. .-+-+==.| -.+.|-.|--++..|.|+.++++++.-+
T Consensus 402 d~Gsl~l-~~~r~~~t~P~----vkLg~~F~kv~~f~~rfp~iP~i--leLdhLtVsGdV~FGknV~LkGtViIia---- 470 (498)
T KOG2638|consen 402 DNGSLTL-SPSRFGPTPPL----VKLGSEFKKVEDFLGRFPGIPDI--LELDHLTVSGDVWFGKNVSLKGTVIIIA---- 470 (498)
T ss_pred cCCeEEe-chhhcCCCCCe----eecchhhhHHHHHHhcCCCCCcc--ceeceEEEeccEEeccceEEeeEEEEEe----
Confidence 1 11111 11111111111 12221 11111 000000000 1123445555699999999999997654
Q ss_pred chhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECC
Q 009817 450 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (524)
Q Consensus 450 ~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (524)
+...++.|.+|++++||+|--|++|-+
T Consensus 471 ----------~~~~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 471 ----------NEGDRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred ----------cCCCeeecCCCCeeecceEeccccccc
Confidence 233458899999999999988888743
|
|
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0065 Score=57.51 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=13.8
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.|+.|- +..||+|+.||.++++..
T Consensus 131 vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 131 VWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred eEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 4555555552 345555555555544443
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.002 Score=43.97 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=10.7
Q ss_pred eEeCCCcEE-eeeEECCCCEECCCcEE
Q 009817 465 IGVGRNTKI-RNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 465 ~~Ig~~~~I-~~~iI~~~~~Ig~~~~i 490 (524)
+.|+.++.| .+|.|++++.|+.++.|
T Consensus 8 ~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 8 VIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEECCCcEecCCCEECCCCEEcCCCEE
Confidence 444444443 23444444444444444
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0093 Score=57.69 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=60.4
Q ss_pred eeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEEC
Q 009817 402 CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 479 (524)
Q Consensus 402 ~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~ 479 (524)
+.++-.++++....+ +..|...+++.+++|+.||.+.++++..++ ..||+.+.|+ .-++.
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~ 90 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVI 90 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEe
Confidence 455567888888888 577888889999999999999888888886 8889998885 56667
Q ss_pred CCCEECCCcEEeCC
Q 009817 480 KNVKIGKDVVIVNK 493 (524)
Q Consensus 480 ~~~~Ig~~~~i~~~ 493 (524)
-+-.||+++.|.++
T Consensus 91 gdLdig~dV~Iegg 104 (277)
T COG4801 91 GDLDIGADVIIEGG 104 (277)
T ss_pred cccccccceEEecC
Confidence 77888888888887
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0037 Score=42.66 Aligned_cols=32 Identities=13% Similarity=0.376 Sum_probs=15.8
Q ss_pred eEECCCCEEC-ceEE-eceEEcCCcEECCCCEEe
Q 009817 407 AIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK 438 (524)
Q Consensus 407 siIg~g~~I~-~~~i-~~siIg~~~~Ig~~~~I~ 438 (524)
+.|+++|+|+ ++.| .++.||++|.|++++.|+
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4555555555 2322 235555555555555553
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0086 Score=40.74 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=13.3
Q ss_pred eEECCCCEEC-ceEEeceEEcCCcEECCCCEE
Q 009817 407 AIISHGCFLR-ECTVEHSIVGERSRLDYGVEL 437 (524)
Q Consensus 407 siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I 437 (524)
..||++|+|+ ++.+ ...||++|.|+.|+.|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 4667777777 3333 3455555555555444
|
... |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0085 Score=40.75 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=3.5
Q ss_pred eEeCCCcEE
Q 009817 465 IGVGRNTKI 473 (524)
Q Consensus 465 ~~Ig~~~~I 473 (524)
+.||+||.|
T Consensus 2 v~IG~~~~i 10 (34)
T PF14602_consen 2 VTIGDNCFI 10 (34)
T ss_dssp EEE-TTEEE
T ss_pred eEECCCEEE
Confidence 444444444
|
... |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.47 Score=41.05 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=66.9
Q ss_pred ceeecCcchhHHHHHHHHHhcC--CCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sG--i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
++|..|..+++.++++.+.+.+ ..+++|+.+...+...+.+.+.. .. ... +..+.... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~--~~~---~~~~~~~~---------~~g~~ 66 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYA-KK--DPR---VIRVINEE---------NQGLA 66 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHH-hc--CCC---eEEEEecC---------CCChH
Confidence 3566666699999999999987 78999999887777766664332 11 011 22222111 14888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccCH-HHHHHHHH
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHV 238 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~ 238 (524)
.++..++.... .+.++++.+|..+..++ ..++..+.
T Consensus 67 ~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 67 AARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHHh
Confidence 99988877663 58899999999998775 44434433
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.17 Score=48.06 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHH
Q 009817 127 RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206 (524)
Q Consensus 127 pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i 206 (524)
|||+++++.+..+++++++++++. +++.+++. .++ ++++.... .|...+++.++..+
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~--------~~~---v~~i~~~~----------~G~~~si~~al~~~ 87 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAAR--------NLG---APVLRDPG----------PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH--------hcC---CEEEecCC----------CCHHHHHHHHHHHh
Confidence 999999999999988889888874 33333321 122 44443221 18999999988766
Q ss_pred HhhhcCCCCeEEEEcCcee-c-ccCHHHHHHHHH
Q 009817 207 EDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHV 238 (524)
Q Consensus 207 ~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~ 238 (524)
.. ..+.++++.||+- . ...+.++++...
T Consensus 88 ~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 88 RE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 41 2358999999983 3 345788887653
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.045 Score=49.55 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=24.1
Q ss_pred CCCCCCCccCCCeEEcC-eee----eceEECCCCEECc-eEEe
Q 009817 385 TPFYTSPRFLPPTKIDN-CRI----KDAIISHGCFLRE-CTVE 421 (524)
Q Consensus 385 ~~i~~~~~i~p~~~i~~-~~i----~~siIg~g~~I~~-~~i~ 421 (524)
+.+.....|.+++.++. +++ .+-+||+||.|++ +.|.
T Consensus 21 s~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~ 63 (190)
T KOG4042|consen 21 SDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIR 63 (190)
T ss_pred cccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHH
Confidence 44555666777777764 333 4688999999985 4443
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=92.24 E-value=3 Score=36.84 Aligned_cols=110 Identities=12% Similarity=0.150 Sum_probs=71.2
Q ss_pred ceeecCcchhHHHHHHHHHhc--CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~s--Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
.+|.-+....|..+|+.+.+. ...+|+|+-....+...+.+ +.+.. ....++++...+. .|.+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~-~~~~~-----~~~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEIL-EEYAE-----SDPNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHH-HHHHC-----CSTTEEEEEHCCC---------SHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccc-ccccc-----ccccccccccccc---------cccc
Confidence 467766667888999988876 44577776665544554444 34432 1123677654432 3778
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEEEE
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~~~ 249 (524)
.++..+..... .+.++++..|.++..+ +..+++...+.+.++.+...
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 88888877765 4799999999999877 78888988887776554443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.67 Score=49.78 Aligned_cols=126 Identities=23% Similarity=0.331 Sum_probs=69.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCc--chhHHHHHHHHHhc----------CCC-eEEEEecc-CchhHHHH
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGC--YRLIDIPMSNCINS----------GIN-KIFVLTQF-NSASLNRH 158 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk--~pLId~~l~~l~~s----------Gi~-~I~Ivt~~-~~~~l~~h 158 (524)
.++.++++|||.||||. ..-||-+.|+|-. ..|+++..+.+... |.+ ..+|.|.. ..+.-.+|
T Consensus 96 ~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred CcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 56889999999999997 4589999999843 15888777665421 211 23555554 34555555
Q ss_pred HHH-hhhcCCcccCCCeEEEEccccCC--CCCCC---C-------cccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee
Q 009817 159 IAR-TYFGNGTNFGDGFVEVLAATQTP--GESGK---N-------WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL 225 (524)
Q Consensus 159 l~~-~y~~~~~~~~~~~V~vl~~~q~~--~e~~~---~-------~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l 225 (524)
+.. .||+-. ...|.+.....-+ +..++ + -+.|.++..+.+...++|....+...+=+.+-|.+
T Consensus 173 f~~~~~FGl~----~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~l~dm~~rgi~~~hiy~Vdnv 248 (477)
T KOG2388|consen 173 FESHKYFGLK----PEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQLEDMAARGIFYDHIYCVDNV 248 (477)
T ss_pred HhhcCCCCCC----hhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhhhhHHHhhcccEEEEEEecce
Confidence 542 334321 0122222110000 00011 0 11477666666666677665566666666666653
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.86 Score=48.98 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=53.8
Q ss_pred hhhcCceEEEEec-CeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEE-cCeeeeceEECCCCEEC-
Q 009817 340 AIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLR- 416 (524)
Q Consensus 340 li~~~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i-~~~~i~~siIg~g~~I~- 416 (524)
.++...+...... +.++-+||-.+|++--..- +.+. +.. ..+...+.. .+..+ .++-|.+|+|..+|.++
T Consensus 223 ~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~----~~l~-~~~-~~~~~~~~~-~~~~~~~~~~VinSil~~~~~vg~ 295 (414)
T PF07959_consen 223 LLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD----SELG-IMR-RKFSHSPAT-TPSDSEASSCVINSILEGGVSVGP 295 (414)
T ss_pred HhhhccccccccCCceEEEecCCHHHHHhhccC----cccc-cce-eeeeccccc-cccccCCCeeEEEeEecCCceECC
Confidence 3444555555554 6788899998776542221 1110 000 001111111 01122 23455677888888887
Q ss_pred ceEEeceEEcCCcEECCCCEEeceEEeC
Q 009817 417 ECTVEHSIVGERSRLDYGVELKDTVMLG 444 (524)
Q Consensus 417 ~~~i~~siIg~~~~Ig~~~~I~~s~i~~ 444 (524)
++.|+||.|+.+++||++|.|.+.-+..
T Consensus 296 ~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 296 GSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred CCEEEeeecCCCCEECCCCEEECCcccc
Confidence 5677888888888888887777654443
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.64 E-value=8 Score=36.93 Aligned_cols=106 Identities=17% Similarity=0.087 Sum_probs=62.3
Q ss_pred eeEEEEe---CCCCCcccCCcc-CCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 95 VAAIILG---GGAGTKLFPLTL-RAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 95 m~aVILA---aG~GtRL~PLT~-~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
|.+||+- ++.-|||.|.-. ..-+-++ +-|+-.++..+... +.+|.|++.... +-. +
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~-----laML~dvi~Al~~~-~~~i~Vvtpde~--~~~------------~ 60 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA-----LAMLVDVLGALAGV-LGEITVVTPDEE--VLV------------P 60 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH-----HHHHHHHHHHhhhh-cCCceEEcCChH--hhh------------h
Confidence 4566764 467788877521 1111111 25677777777554 789999997522 111 1
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHH
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHV 238 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~ 238 (524)
+.. .+|+... +.-.|+.++++.+.. + +.++|+.+|. +...+++++++..+
T Consensus 61 a~~-~~vl~d~------------dLN~Ai~aa~~~~~~----p-~~v~vvmaDLPLl~~~~i~~~~~~~~ 112 (210)
T COG1920 61 ATK-LEVLADP------------DLNTAINAALDEIPL----P-SEVIVVMADLPLLSPEHIERALSAAK 112 (210)
T ss_pred ccc-ceeeecc------------chHHHHHHHHhhCCC----C-cceEEEecccccCCHHHHHHHHHhcC
Confidence 111 2445431 345678888777651 2 6799999998 44567888876543
|
|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=83.21 E-value=21 Score=34.15 Aligned_cols=105 Identities=10% Similarity=0.122 Sum_probs=65.2
Q ss_pred ceeecCcchhHHHHHHHHHhcCC----CeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccC
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi----~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~G 194 (524)
++|.-+..+.+...++.+.+... -+|+|+-+...+...+.+. .+..+ . ..+.++.... .|
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~-~~~~~---~--~~v~~i~~~~----------~~ 68 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ-EYAAK---D--PRIRLIDNPK----------RI 68 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH-HHHhc---C--CeEEEEeCCC----------CC
Confidence 45666665778888888877644 3777776665555555553 33221 1 2255554321 25
Q ss_pred cHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEE
Q 009817 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADIT 245 (524)
Q Consensus 195 ta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~t 245 (524)
-+.++..+....+ .+.++++.+|.....+ +.++++.+.+.+.++.
T Consensus 69 ~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 69 QSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred chHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEE
Confidence 5667766665543 5899999999988766 6888876665555443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.51 E-value=1.7 Score=51.23 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=32.9
Q ss_pred CEEeceEEeCCccccchhhHHhhhcCCccceEeCCC-cEEeeeEECCCCEECCCcEEeCCC
Q 009817 435 VELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 435 ~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~-~~I~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.+.++++-.. +.+|++ ++|+||.|+.+++||.+++|.+..
T Consensus 332 ~~v~ns~~~~~-------------------~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~ 373 (974)
T PRK13412 332 MFVQNAVLSGK-------------------LTAENATLWIENSHVGEGWKLASRSIITGVP 373 (974)
T ss_pred eEEEeeEecCC-------------------cccCCCeEEEEeeEecCCeEEcCCcEEeccc
Confidence 45667777666 788887 558899999999999999999874
|
|
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=82.38 E-value=19 Score=32.69 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=65.5
Q ss_pred eeecCcchhHHHHHHHHHhc----CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCc
Q 009817 120 VPVAGCYRLIDIPMSNCINS----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (524)
Q Consensus 120 lpIgGk~pLId~~l~~l~~s----Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gt 195 (524)
+|..+....|..+|+.+.+. ...+|+|+-+...+...+.+. .+.. ++. .+.++...+. .|-
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~~~---~~~--~~~~~~~~~n---------~G~ 67 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-ELAA---RVP--RVRVIRLSRN---------FGK 67 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HHHH---hCC--CeEEEEccCC---------CCc
Confidence 45555545667777777766 256777776554444444442 3321 121 2344443332 488
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEEEE
Q 009817 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (524)
Q Consensus 196 a~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl~~ 248 (524)
+.++..+..... .+.++++.+|.....+ +.++++...+.+.++.+..
T Consensus 68 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 68 GAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred cHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 888887776653 4889999999887766 6888887566666554433
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 524 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 1e-130 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 5e-46 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 2e-06 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 4e-06 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 5e-06 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 5e-06 | ||
| 1mp4_A | 292 | W224h Variant Of S. Enterica Rmla Length = 292 | 1e-05 | ||
| 1iim_A | 292 | Thymidylyltransferase Complexed With Ttp Length = 2 | 1e-05 | ||
| 1mp5_A | 292 | Y177f Variant Of S. Enterica Rmla Length = 292 | 1e-05 | ||
| 1mp3_A | 292 | L89t Variant Of S. Enterica Rmla Length = 292 | 2e-05 | ||
| 1g23_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 2e-05 | ||
| 3pkp_A | 292 | Q83s Variant Of S. Enterica Rmla With Datp Length = | 3e-05 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 5e-05 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 7e-05 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 7e-05 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 7e-05 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 8e-05 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292 | Back alignment and structure |
|
| >pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293 | Back alignment and structure |
|
| >pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 524 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 0.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 0.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 3e-18 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 2e-16 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 8e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 2e-06 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 1e-05 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 1e-04 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 679 bits (1754), Expect = 0.0
Identities = 231/456 (50%), Positives = 323/456 (70%), Gaps = 14/456 (3%)
Query: 78 MTLAPPRLERRRVDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMS 134
M ++ + + +DP ++V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+S
Sbjct: 1 MAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVS 60
Query: 135 NCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193
NC+NS I+KI+VLTQFNSASLNRH++R Y G +GFVEVLAA Q+P +WFQ
Sbjct: 61 NCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPDWFQ 118
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
GTADAVRQ+ W+FE+ + IL GDHLYRMDY FIQ+H + DADIT++ + E
Sbjct: 119 GTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDE 175
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313
RA+ +GL+KID GRI +FAEKP G L+AM+VDT++LG + A++ P++ASMG+YV
Sbjct: 176 KRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVI 235
Query: 314 KKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372
KDV+ LLR ++P +NDFGSE+IP A + VQAY++ YWEDIGTI++FY AN+ +T
Sbjct: 236 SKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 295
Query: 373 K-ESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRL 431
K P F FYD P YT PR+LPP+K+ + + D++I GC ++ C + HS+VG RS +
Sbjct: 296 KKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCI 355
Query: 432 DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 491
G ++D++++GADYY+T+++ L A+G VPIG+G+N I+ IIDKN +IG +V I+
Sbjct: 356 SEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKII 415
Query: 492 NKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524
NKD EA R G++I+SGI +++ A I G++I
Sbjct: 416 NKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 546 bits (1410), Expect = 0.0
Identities = 134/459 (29%), Positives = 210/459 (45%), Gaps = 66/459 (14%)
Query: 85 LERRRVDP--KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGIN 142
+ +RV P ++ A +L GG G++L LT R A PAV G R+ID +SN +NSGI
Sbjct: 1 MSEKRVQPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIR 60
Query: 143 KIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQ 201
+I V TQ+ + SL RH+ R + F + ++L A+Q E+ W++GTADAV Q
Sbjct: 61 RIGVATQYKAHSLIRHLQRGWDFFRP--ERNESFDILPASQRVSET--QWYEGTADAVYQ 116
Query: 202 FTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGL 261
+ E E + IL GDH+Y+MDY +Q HVD AD+TI C V A+ +G+
Sbjct: 117 NIDIIEPY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGV 173
Query: 262 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321
+ ++ I F EKP+ + +ASMG+YVF L +
Sbjct: 174 MHVNEKDEIIDFIEKPADPP--------------GIPGNEGFALASMGIYVFHTKFLMEA 219
Query: 322 LRWRYP---TSNDFGSEIIPAAIMEHDVQAYIFRD-----------YWEDIGTIKSFYEA 367
+R +S DFG +IIP + A+ F D YW D+GTI ++++A
Sbjct: 220 VRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQA 279
Query: 368 NMALTKESPAFHFYDPKTPFYTSPRFLPPTKI------DNCRIKDAIISHGCFLRECTVE 421
N+ LT P YD P +T PP K +++S C + +
Sbjct: 280 NIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALN 339
Query: 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN 481
S++ R + L++ V+L + + +GR+ ++ N +ID
Sbjct: 340 RSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHG 380
Query: 482 VKIGKDVVIVNKDEADRPELGFYI-RSGITIIMEKATIE 519
V I + +++ E D F SGI +I + +
Sbjct: 381 VVIPEGLIVGEDPELDAK--RFRRTESGICLITQSMIDK 417
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 3e-18
Identities = 83/443 (18%), Positives = 142/443 (32%), Gaps = 101/443 (22%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFVLTQFNSASL 155
A IL G+G +L P+T VP+ + LI+ + GI I V+
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPILS--KPLIEYQIEYLRKCGIRDITVIVS------ 54
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ YF V +GT A+ AK +
Sbjct: 55 --SKNKEYFEKK---LKEISIVTQKDD---------IKGTGAAILS-------AKFN--D 91
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD---YGLVKIDNMGRIAQ 272
I+ GD + + IT+ A+ + S+ YG++ +DN +++
Sbjct: 92 EALIIYGDLF--------FSNEKEICNIITLKENAIIGVKVSNPKDYGVLVLDNQNNLSK 143
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR-----WR-- 325
EKP P + + G+Y D +F L R
Sbjct: 144 IIEKPEI---------------PPSN------LINAGIYKLNSD-IFTYLDKISISERGE 181
Query: 326 -YPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
T + I +H V+ + YW DIG + + N F
Sbjct: 182 LELT------DAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNL---VFSQNL 232
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV--EHSIVGERSRLDYGVELKDTVM 442
+ + I+ +DA I G ++ + S +G S L L +
Sbjct: 233 GNVEDNVKIKGKVIIE----EDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNK 288
Query: 443 LGADYYQTESEI-ASLLAEG-KVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPE 500
+GA E+ S++ EG K+P + + + +I ++V G +I N ++
Sbjct: 289 IGAS-----VEVKESVIMEGSKIP----HLSYVGDSVIAEDVNFGAGTLIANLRFDEKEV 339
Query: 501 LGFYIRSGITIIMEK--ATIEDG 521
I+ K A I
Sbjct: 340 KVNVKGKRISSGRRKLGAFIGGH 362
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-16
Identities = 39/313 (12%), Positives = 85/313 (27%), Gaps = 69/313 (22%)
Query: 70 TSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLI 129
+ H + L P + V AIIL G GT+L PLT V V LI
Sbjct: 4 SHHHHHHSSGLVP---RGSHMKEIRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLI 59
Query: 130 DIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGK 189
+ + GIN I ++ ++ + +G V
Sbjct: 60 EYQIEFLKEKGINDIIIIVG--------YLKEQFDYLKEKYGVRLVFNDKYADY------ 105
Query: 190 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249
++ K + I ++L++ + ++ + R ++
Sbjct: 106 ----NNFYSLYL-------VKEELANSYVIDADNYLFK----NMFRNDLTRSTYFSVY-- 148
Query: 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309
++ + + ++ G
Sbjct: 149 ---REDCTNEWFLVYGDDYKVQDIIVDSKAGR------------------------ILSG 181
Query: 310 VYVFKKDVLFKLLR------WRYPTSNDFGSEIIPAAIMEHDVQAYIF-RDYWEDIGTIK 362
V + K++ + + ++ I E DV + +I +++
Sbjct: 182 VSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQ 241
Query: 363 SFYEANMALTKES 375
+ + L E+
Sbjct: 242 DYRKLEEILKNEN 254
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 8e-15
Identities = 40/276 (14%), Positives = 82/276 (29%), Gaps = 71/276 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGC---YRLIDIPMSNCINSGINKIFVLTQFNSA 153
A+IL G GT+L + P V V GC R + + ++ +++ ++ +
Sbjct: 21 AVILAAGLGTRLGGVP----KPLVRVGGCEIILRTMKL-----LSPHVSEFIIVASRYA- 70
Query: 154 SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRN 213
+ D E G ++ AKN
Sbjct: 71 ----DDIDAFLK------DKGFNYKIVRHDRPEKG------NGYSLLV-------AKNHV 107
Query: 214 IENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 273
+ + GDH+Y FI+ V + I + + +++++ GR+A+
Sbjct: 108 EDRFILTMGDHVYSQQ---FIEKAVRGEGVIADREPRFVDI--GEATKIRVED-GRVAKI 161
Query: 274 AEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333
+ + G +V + F+ D
Sbjct: 162 GKDLREFDC-----------------------VDTGFFVLDDSI-FEHA----EKLRDRE 193
Query: 334 SEIIPAAIMEHDVQA-YIFRDYWEDIGTIKSFYEAN 368
+ + + Y+ + W D+ T + AN
Sbjct: 194 EIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 78/549 (14%), Positives = 146/549 (26%), Gaps = 195/549 (35%)
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFV---------------LTQFNSASLNRHIARTY-- 163
V+G RL +S + + FV T+ S+ +
Sbjct: 60 AVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 164 --FGNGTNFGDGFV----EVLAATQ-----TPGE---------SGKNWFQGTADAVRQFT 203
+ + F V L Q P + SGK W D +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYK 175
Query: 204 ----------WVFEDAKNRN-----IENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248
W+ + KN N +E + L Y++D S D ++I +
Sbjct: 176 VQCKMDFKIFWL--NLKNCNSPETVLEMLQKLL----YQIDPNW--TSRSDHSSNIKLRI 227
Query: 249 AAVGES-----RASDY--GLVKIDNM------------------GRIAQFAEKPSGANLK 283
++ ++ Y L+ + N+ R Q + S A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 284 AMQVDTSLLGFSPQEAR----KC----------------PYVASMGVYVFKKDVLFKLLR 323
+ +D + +P E + K P S+ + +D L
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDN 346
Query: 324 WRYPTSNDFGSEIIPAAI---MEHDVQAY-----IFRD-----------YWEDIGTIKSF 364
W++ + + II +++ + + +F W D+
Sbjct: 347 WKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV----IK 401
Query: 365 YEANMALTKESPAFHFY-----DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-C 418
+ + + K H Y PK I +L
Sbjct: 402 SDVMVVVNK----LHKYSLVEKQPKESTI--------------SI------PSIYLELKV 437
Query: 419 TVE-----HSIVGERSRLDYGVELKDTVMLGADYY----------QTE-SEIASLLA--- 459
+E H + + + + D + D Y E E +L
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 460 ------EGKVPIGVGRNTKIRNCIID--KNVKIGKDVVIVNKDEADRPE---LGFYIRSG 508
E K+ I++ + +K K + N + +R L F +
Sbjct: 498 LDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 509 ITIIMEKAT 517
+I K T
Sbjct: 557 ENLICSKYT 565
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 30/176 (17%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+I+ GG GT++ + P + + G LID +S + S +N IF+ T N+
Sbjct: 3 ALIMAGGKGTRMGGVE----KPLIKLCG-RCLIDYVVSPLLKSKVNNIFIATSPNTPKT- 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ Y + + + T G +G + + + E
Sbjct: 57 ----KEYINSAYKDY----KNIVVIDTSG-------KGYIEDLNE-------CIGYFSEP 94
Query: 217 VAILCGD--HLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
++ D +L + A A Y ID G +
Sbjct: 95 FLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEKYPNPSIDFNGLV 150
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-05
Identities = 44/301 (14%), Positives = 80/301 (26%), Gaps = 57/301 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPA--VPVAGCYR-LIDIPMSNCINSGINKIFVLT-QFNS 152
+L G G+ R + + ++D + + I +G ++ +
Sbjct: 8 LFVLAAGMGS-------RYGSLKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFE 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVE-----VLAATQTPGESGKNWFQGTADAVRQFTWVFE 207
I Y G V + P K W GT AV
Sbjct: 61 KEFREKILTKYEGRIP---VELVFQELDRLPEGFSCPEGREKPW--GTNHAVLM------ 109
Query: 208 DAKNRNIENVAILCGDHLY----RMDYMDFIQSHVDRDADITISCAAVG----ESRASDY 259
++ E A++ D Y + + + + + VG ES
Sbjct: 110 -GRDAIREPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSR 168
Query: 260 GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319
G+ ++D + E+ G A P SM ++ F D F
Sbjct: 169 GVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAP--VSMNMWGFTPDY-F 225
Query: 320 KLLRWRYP-----TSNDFGSEI-IPAAIMEH------DVQAYIFRDYW------EDIGTI 361
+ + SE IP + + V+ W +D +
Sbjct: 226 DYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGV 285
Query: 362 K 362
Sbjct: 286 V 286
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 86/469 (18%), Positives = 150/469 (31%), Gaps = 128/469 (27%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAV--PVAGCYR-LIDIPMSNCINSGINKIFVLT 148
+ AIIL G GT+ +++ P V VAG +++ + K +
Sbjct: 9 HHSNFAIILAAGKGTR-----MKSDLPKVLHKVAG--ISMLEHVFRSVGAIQPEKTVTVV 61
Query: 149 QFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ-GTADAVRQFTWVFE 207
+ + T F TQ+ Q GT AV + E
Sbjct: 62 GHKAELV-----EEVLAGQTEF---------VTQSE--------QLGTGHAVMMTEPILE 99
Query: 208 DAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
+ ++ GD L + + + I H++ TI A YG + +
Sbjct: 100 GLS----GHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--PFGYGRIVRN 153
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
+ + + E Q D + E ++ + + G YVF + LF+ L+
Sbjct: 154 DNAEVLRIVE----------QKDA-----TDFE-KQIKEINT-GTYVFDNERLFEALK-N 195
Query: 326 YPTSNDFG----SEIIPAAIME-HDVQAYIFRDYWEDIG--TIKSFYEANMALTKESPAF 378
T+N G +++I V AY +D+ E +G + A + +
Sbjct: 196 INTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHK 255
Query: 379 H------FYDPKTPFYTSPR--------------FLPPTKID-------NCRIKDAIISH 411
H F +P+ Y TKI + D+ I
Sbjct: 256 HMVNGVSFVNPEA-TYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGA 314
Query: 412 GCFLRECTVEHSIVGER------SRLDYGVELKDTVMLGADYYQTESEI-ASLLAEG-KV 463
G + +E S V + + + L V +G ++ E+ S + E K
Sbjct: 315 GAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIG-NFV----EVKGSSIGENTKA 369
Query: 464 P----IG---VGRNTKI-----------RN---CIIDKNVKIGKDVVIV 491
IG VG N +N +I NV +G + I+
Sbjct: 370 GHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTII 418
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 524 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 100.0 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 99.98 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 99.98 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.97 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.97 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.97 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.97 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.95 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.95 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.94 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.94 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.91 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.91 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.9 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.89 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.88 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.87 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.86 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.85 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.84 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.84 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.81 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.81 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.8 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.8 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.78 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.78 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.78 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.73 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.72 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.72 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.71 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.7 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.67 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.66 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.61 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.6 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.6 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.59 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.57 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.55 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.48 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.45 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.42 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.42 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.41 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.38 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.35 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.31 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.3 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.28 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.27 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.26 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.26 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.26 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.24 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.24 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.22 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.21 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.21 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.19 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.19 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.17 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.16 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.14 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.13 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.13 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.13 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.12 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.12 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.11 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.1 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.1 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.09 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.07 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.07 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.07 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.06 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 99.06 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.05 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 99.03 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.03 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.02 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.02 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 99.02 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.01 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.0 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.99 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.99 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.98 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.98 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.97 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.97 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.94 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.93 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.92 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 98.92 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.92 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.92 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.91 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.89 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.89 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.89 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.88 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.82 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.8 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.79 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.79 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.78 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.77 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.77 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.76 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.75 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.75 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.75 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.72 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.72 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.72 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.71 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.69 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.66 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.65 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.64 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.63 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.62 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.61 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.6 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.6 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.6 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.59 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.55 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.52 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.5 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.49 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.48 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.46 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.45 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.42 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.39 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.38 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.35 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.34 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.34 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.32 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.32 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.29 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.24 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.2 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.16 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.12 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.12 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.07 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.05 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 97.96 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.93 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.52 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.34 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.19 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.75 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 84.08 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-59 Score=501.83 Aligned_cols=430 Identities=53% Similarity=0.988 Sum_probs=352.7
Q ss_pred CCCCCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCc
Q 009817 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGT 168 (524)
Q Consensus 89 ~~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~ 168 (524)
+.+|++|++||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.| +...
T Consensus 15 ~~~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-~~~~ 93 (451)
T 1yp2_A 15 PDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-ASNM 93 (451)
T ss_dssp SCHHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHC-C---
T ss_pred cccccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhh-hccc
Confidence 345778999999999999999999999999999999889999999999999999999999999999988986543 1111
Q ss_pred -cc-CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEE
Q 009817 169 -NF-GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI 246 (524)
Q Consensus 169 -~~-~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl 246 (524)
.+ ..+.++++...+.+. ..+|.+||+++|+.+++++++ ...++||+++||+++..+|.++++.|+++++++|+
T Consensus 94 ~~~~~~~~v~i~~~~~~~~--~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl 168 (451)
T 1yp2_A 94 GGYKNEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITV 168 (451)
T ss_dssp -----CCEEEEEESCSSTT--SCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEE
T ss_pred ccccccCcEEEeccccccc--ccccccCcHHHHHHHHHHHHh---cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEE
Confidence 01 123466665444321 235778999999999988852 13489999999999999999999999999999999
Q ss_pred EEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 247 SCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 247 ~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
++.+...+.+++||++.+|++++|..|.|||.....+.+.++.++++-.+......++++++|+|+|++++|..+++..+
T Consensus 169 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 248 (451)
T 1yp2_A 169 AALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKF 248 (451)
T ss_dssp EEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTC
T ss_pred EEEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhc
Confidence 88877532356899999999999999999998654444455555554333211123578999999999999877777665
Q ss_pred CCCCchhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCccCCCeEEcCeee
Q 009817 327 PTSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRI 404 (524)
Q Consensus 327 ~~~~d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~-~~~~~~~~~~~i~~~~~i~p~~~i~~~~i 404 (524)
+...++..++++.++++ .++++|.++++|.||||+++|.+|++.++.+. +...++++.+++++++.+.|+++|.+++|
T Consensus 249 ~~~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I 328 (451)
T 1yp2_A 249 PGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADV 328 (451)
T ss_dssp TTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEE
T ss_pred ccccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEE
Confidence 55567778899998887 79999999999999999999999999999876 67788999999999999999999988999
Q ss_pred eceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEE
Q 009817 405 KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (524)
Q Consensus 405 ~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~I 484 (524)
.+++||+||+|+++.+.+|+||++|.||++|.|.++++++++.++...+.......|.+.+.||+|+.|++|+||+||.|
T Consensus 329 ~~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~I 408 (451)
T 1yp2_A 329 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI 408 (451)
T ss_dssp EEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred eCeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEE
Confidence 99999999999988899999999999999999999999998777766666556556665579999999999999999999
Q ss_pred CCCcEEeCCC---CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 485 GKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 485 g~~~~i~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
|++++|.+.+ ..++++++++|++|.++||++++|++|++|
T Consensus 409 G~~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 409 GDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp CTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred CCCCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 9999999985 334778899999998999999999999986
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=445.81 Aligned_cols=384 Identities=33% Similarity=0.554 Sum_probs=310.2
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+++++.++|+++|+|+++++.+++.+|+...| +....+.
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~~~ 88 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGW-DFFRPER 88 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHS-CCCCGGG
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhh-ccccccc
Confidence 667999999999999999999999999999999978999999999999999999999999889988886433 2100011
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
...+.++...+.. ...+|++||+++|+.++.++.+ ...++|++++||+++..++.++++.|+++++++|+++.+.
T Consensus 89 ~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~ 163 (420)
T 3brk_X 89 NESFDILPASQRV--SETQWYEGTADAVYQNIDIIEP---YAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEV 163 (420)
T ss_dssp TCEEEEECCC---------CCCCHHHHHHTTHHHHHH---HCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEE
T ss_pred cCCEEEeCccccc--cCCccccCCHHHHHHHHHHHHh---cCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeec
Confidence 1236666544320 0135778999999999988863 1247899999999999999999999999999999998877
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--- 328 (524)
+.+.++.||++.+|++|+|..|.|||..+... +. ...++++++|+|+|++++|.++++...+.
T Consensus 164 ~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~--~~------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 229 (420)
T 3brk_X 164 PRMEATGFGVMHVNEKDEIIDFIEKPADPPGI--PG------------NEGFALASMGIYVFHTKFLMEAVRRDAADPTS 229 (420)
T ss_dssp ETTGGGGSEEEEECTTSBEEEEEESCSSCCCB--TT------------BTTEEEEEEEEEEEEHHHHHHHHTSSCCC---
T ss_pred CccccCcccEEEECCCCcEEEeEeCCCccccc--cc------------cccceEEeeeeEEEeHHHHHHHHHHhcccCCc
Confidence 54445789999999999999999998643210 00 01247899999999999987777654332
Q ss_pred CCchhhhhHHhhhhcCceEEEEe-----------cCeEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCe
Q 009817 329 SNDFGSEIIPAAIMEHDVQAYIF-----------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPT 397 (524)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~y~~-----------~~~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~ 397 (524)
..+|..++++.+++++++++|.+ +++|.||||++||.+||+.+++..+...++.+.+++++.+.+.|++
T Consensus 230 ~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~ 309 (420)
T 3brk_X 230 SRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPA 309 (420)
T ss_dssp -------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCC
T ss_pred cccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCc
Confidence 23566789999998889999999 8999999999999999999998877777788889999999999999
Q ss_pred EEc------CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCc
Q 009817 398 KID------NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 471 (524)
Q Consensus 398 ~i~------~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~ 471 (524)
++. ++.+.++.||+||+|.++.|.||+||++|+||++|.|++++++++ +.||+++
T Consensus 310 ~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~-------------------~~i~~~~ 370 (420)
T 3brk_X 310 KFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHA 370 (420)
T ss_dssp EEECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT-------------------CEECTTC
T ss_pred EEecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC-------------------CEECCCC
Confidence 996 477889999999999778999999999999999999999999988 9999999
Q ss_pred EEeeeEECCCCEECCCcEEeCCCCCCCCCCceEE-ecCcEEEcCCC
Q 009817 472 KIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYI-RSGITIIMEKA 516 (524)
Q Consensus 472 ~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i-~~g~~vv~~~~ 516 (524)
.|.+|+||+|+.||.+++|.+..+ .+.++++| .+|+++|.+++
T Consensus 371 ~i~~~~ig~~~~i~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~ 414 (420)
T 3brk_X 371 QLSNVVIDHGVVIPEGLIVGEDPE--LDAKRFRRTESGICLITQSM 414 (420)
T ss_dssp EEEEEEECTTCEECTTCEESSCHH--HHHHHSEECTTSCEEECHHH
T ss_pred EEeceEECCCCEECCCCEEeCCCC--CCCceEEEecCceEEEecch
Confidence 999999999999999999996631 11224888 68888886653
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=390.06 Aligned_cols=389 Identities=18% Similarity=0.194 Sum_probs=286.4
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
.++.+||||||+||||+|+| ||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+.+.. ..++
T Consensus 11 ~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~----~~~~- 81 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELA----DTLG- 81 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHH----HHHT-
T ss_pred CCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHH----HhcC-
Confidence 45789999999999999985 9999999999 9999999999999999999999999999999986321 0122
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-cCHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..++++. |. +++|||+||+++++++.+ ...+.+|+++||..+ . ..+.+|++.|+..++++++++.+
T Consensus 82 ~~i~~~~--q~-------~~lGTa~Av~~a~~~l~~---~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~ 149 (501)
T 3st8_A 82 RTIDVAL--QD-------RPLGTGHAVLCGLSALPD---DYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTT 149 (501)
T ss_dssp SCCEEEE--CS-------SCCCHHHHHHHHHTTSCT---TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CcEEEEE--cC-------CCCCcHHHHHHHHHHhcc---ccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeec
Confidence 1244443 32 247999999999988853 235789999999844 3 45899999999999999999999
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-- 328 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~-- 328 (524)
+++ ++.||.+..|++|+|..|.|||..+..+ ...+++++|+|+|++++|..++......
T Consensus 150 ~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~~~-----------------~~i~~in~Giy~f~~~~l~~~l~~l~~~n~ 210 (501)
T 3st8_A 150 LDD--PFGYGRILRTQDHEVMAIVEQTDATPSQ-----------------REIREVNAGVYAFDIAALRSALSRLSSNNA 210 (501)
T ss_dssp CSC--CTTSCEEEECTTCCEEEEECGGGCCHHH-----------------HHCCEEEEEEEEEEHHHHHHHHTTCCCCST
T ss_pred cCC--chhccccccccceeEEeeccccCCChhh-----------------ccceeeeceeeeecchhHHHhhhhhccccc
Confidence 877 5789999999999999999998754321 1246889999999999998887654332
Q ss_pred -CCchhhhhHHhhhhc-CceEEEEecCeEeecC--CHHHHHHHHHHhhcc--------C-----CCccccCCCCCCCCCC
Q 009817 329 -SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIG--TIKSFYEANMALTKE--------S-----PAFHFYDPKTPFYTSP 391 (524)
Q Consensus 329 -~~d~~~dii~~li~~-~~V~~y~~~~~w~dIg--t~~d~~~An~~l~~~--------~-----~~~~~~~~~~~i~~~~ 391 (524)
.+.|..+++..+... ..+.++..+++|...+ +...+.++...+..+ . +.-.+++++..+...+
T Consensus 211 ~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv 290 (501)
T 3st8_A 211 QQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDT 290 (501)
T ss_dssp TCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTC
T ss_pred ccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcc
Confidence 445677888777665 6778888887766544 445554444333211 0 1112233344444555
Q ss_pred ccCCCeEEcC-------------eeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hh
Q 009817 392 RFLPPTKIDN-------------CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (524)
Q Consensus 392 ~i~p~~~i~~-------------~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~ 456 (524)
.|.|++.+.+ +.+.++.|+.++.+..+.+..+.+|.++.|++.++|+ ++++..+..++.++++ .+
T Consensus 291 ~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s 370 (501)
T 3st8_A 291 VIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNS 370 (501)
T ss_dssp EECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESC
T ss_pred eecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccc
Confidence 5555554432 2233444555555544555666777777777777776 4556666667777766 77
Q ss_pred hhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
.+++| +.|++.++|.+|+||+||.||+++++.|.+. ...++++.+|+++. +.||++|+|++|++|
T Consensus 371 ~Ig~g---skI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v 444 (501)
T 3st8_A 371 TIGTG---TKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVV 444 (501)
T ss_dssp EECTT---CEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred eecCC---cEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEE
Confidence 88888 9999999999999999999999999999872 24566777787653 478999999999886
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=372.56 Aligned_cols=379 Identities=18% Similarity=0.244 Sum_probs=269.8
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
-++||||||.||||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++ .. +
T Consensus 12 ~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~-----~~----~--- 75 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVL-----AG----Q--- 75 (468)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSS-----SS----S---
T ss_pred CcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHh-----CC----C---
Confidence 4799999999999985 689999999999 999999999999999999999999876664433 22 1
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++... +.+||+++|+.++.++++ ..+.||+++||+ +...++.++++.|.+.++++++++.+..
T Consensus 76 i~~v~~~---------~~~G~~~sl~~a~~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~ 142 (468)
T 1hm9_A 76 TEFVTQS---------EQLGTGHAVMMTEPILEG----LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD 142 (468)
T ss_dssp SEEEECS---------SCCCHHHHHHTTHHHHTT----CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS
T ss_pred cEEEeCC---------ccCChHHHHHHHHHHhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccC
Confidence 3343321 236999999999988851 247999999999 5567899999999998899998888876
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC---C
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~---~ 329 (524)
+ +..|+.+..|++|+|..|.|||..... ....+++++|+|+|+++.|.++++...+. .
T Consensus 143 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~ 203 (468)
T 1hm9_A 143 N--PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQG 203 (468)
T ss_dssp C--CTTSCEEEECTTCCEEEEECTTTCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTC
T ss_pred C--CCceeEEEECCCCCEEEEEECCCCChH-----------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCCC
Confidence 5 457999999999999999999852210 01247899999999999776666553322 2
Q ss_pred CchhhhhHHhhhhc-CceEEEEecCeEee--cCCHHHHHHHHHHhhccC------CCccccC-------CCCCCCCC---
Q 009817 330 NDFGSEIIPAAIME-HDVQAYIFRDYWED--IGTIKSFYEANMALTKES------PAFHFYD-------PKTPFYTS--- 390 (524)
Q Consensus 330 ~d~~~dii~~li~~-~~V~~y~~~~~w~d--Igt~~d~~~An~~l~~~~------~~~~~~~-------~~~~i~~~--- 390 (524)
..+..++++.++++ .++++|.++++|.+ |+|++||..|+..+..+. +...+++ +...+..+
T Consensus 204 ~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i 283 (468)
T 1hm9_A 204 EYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQI 283 (468)
T ss_dssp SCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEE
T ss_pred eEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEE
Confidence 34567899988886 58999999999977 559999999997664331 1111222 22222222
Q ss_pred ---------CccCCCeEEc-CeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hhhh
Q 009817 391 ---------PRFLPPTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLL 458 (524)
Q Consensus 391 ---------~~i~p~~~i~-~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~ 458 (524)
+.+++++.|. ++.|.++.||++|.|+++.|.+++||++|+|+++|.|+ ++++..+..++..+++ .+.+
T Consensus 284 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~I 363 (468)
T 1hm9_A 284 EANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSI 363 (468)
T ss_dssp CSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEE
T ss_pred CCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEE
Confidence 2222333332 24445666677777766666777788888888888886 6666666666655554 3445
Q ss_pred cCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 459 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 459 ~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+++ +.|++.+.|.+++||+||.||.++++.+.+. ...++++.+|+.|. +.||++++|++|++|
T Consensus 364 g~~---~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v 435 (468)
T 1hm9_A 364 GEN---TKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTI 435 (468)
T ss_dssp CTT---CEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred cCC---cEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCEE
Confidence 555 5555566666788999999999998887431 23445556665553 356777777777654
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=356.81 Aligned_cols=320 Identities=19% Similarity=0.304 Sum_probs=245.0
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|+|||||||.|+||+|||..+||+|+|++|+ |||+|+++++.++|+++|+|+++++ +.+|+...+ . .
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~--~-------~ 67 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKL--K-------E 67 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHC--T-------T
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccC--C-------c
Confidence 6899999999999999999999999999999 9999999999999999999999886 666664211 0 1
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++.... |.+|++++++.+.. .++|+++.||+++. .++.++++ .++.++++.+..
T Consensus 68 i~~~~~~~--------~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~ 125 (401)
T 2ggo_A 68 ISIVTQKD--------DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVS 125 (401)
T ss_dssp CEEEECCT--------TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECS
T ss_pred EEEEeCCC--------CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcC
Confidence 44443221 24689999876642 37899999999887 55777766 356788888776
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CC
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~ 330 (524)
+ +..|+.+..+++|++..|.|||..+ .++++++|+|+|++++|.. ++...+. ..
T Consensus 126 ~--~~~~~~v~~~~~g~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~ 181 (401)
T 2ggo_A 126 N--PKDYGVLVLDNQNNLSKIIEKPEIP---------------------PSNLINAGIYKLNSDIFTY-LDKISISERGE 181 (401)
T ss_dssp C--CSSSCEEEECTTSSEEEEECSCSSC---------------------SCSEEEEEEEEEETHHHHH-HHHSCCCSSSC
T ss_pred C--CcceeEEEECCCCeEEEEEECCCCC---------------------CCcEEEEEEEEEcHHHHHH-hhhcCcCCCCc
Confidence 5 4578999999889999999998643 2468999999999998865 4543221 22
Q ss_pred chhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccCC--Cc-cccCCCCCCCCCCccCCCeEEc-Ceeee
Q 009817 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP--AF-HFYDPKTPFYTSPRFLPPTKID-NCRIK 405 (524)
Q Consensus 331 d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~--~~-~~~~~~~~i~~~~~i~p~~~i~-~~~i~ 405 (524)
....++++.+ .. .++..+..+++|.||+|++||..|++.++.+.. .. ..+++.+.+...+.+++++.|+ ++.|.
T Consensus 182 ~~~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~ 260 (401)
T 2ggo_A 182 LELTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIE 260 (401)
T ss_dssp BCHHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEE
T ss_pred eEHHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEe
Confidence 2245778777 54 689999999999999999999999999886542 11 1223333333333444444442 34443
Q ss_pred -ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 406 -DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 406 -~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
++.||++|.|+ ++.|. +++||++|.|+++|.|.+++++.+ +.||+++.|++|+||+++
T Consensus 261 ~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~Ig~~~ 321 (401)
T 2ggo_A 261 GPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEG-------------------SKIPHLSYVGDSVIAEDV 321 (401)
T ss_dssp SSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTT-------------------CEEEESCEEESCEECTTC
T ss_pred CCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCC-------------------cEECCCceEcceEECCCc
Confidence 57888889887 56675 699999999999999988888887 899999999999999999
Q ss_pred EECCCcEEeCC
Q 009817 483 KIGKDVVIVNK 493 (524)
Q Consensus 483 ~Ig~~~~i~~~ 493 (524)
.||.+++|.+.
T Consensus 322 ~Ig~~~~i~~~ 332 (401)
T 2ggo_A 322 NFGAGTLIANL 332 (401)
T ss_dssp EECTTCEECCS
T ss_pred EECCCcEEcCc
Confidence 99999999853
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=359.30 Aligned_cols=377 Identities=15% Similarity=0.213 Sum_probs=261.6
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+|.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.. ++
T Consensus 8 ~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~--------~~-- 73 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLAD--------PS-- 73 (459)
T ss_dssp CEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC--------------
T ss_pred cceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc--------CC--
Confidence 68999999999999997 689999999999 99999999999999999999999987777665531 11
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.++... +.+||+++|+.++.+++ ..+.|++++||+ +...++.++++.|.+ .++++++.+.
T Consensus 74 -~~~v~~~---------~~~g~~~~i~~~~~~~~-----~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~ 136 (459)
T 4fce_A 74 -LNWVLQA---------EQLGTGHAMQQAAPHFA-----DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKL 136 (459)
T ss_dssp --CEEECS---------SCCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEEC
T ss_pred -cEEEeCC---------CCCCcHHHHHHHHHhcC-----CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEec
Confidence 3344321 23699999999987764 248999999999 445678999998864 5677877777
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---C
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~---~ 328 (524)
.+ +..|+.+..| +|+|..+.|||.....+ ...+++++|+|+|+++.|..+++...+ .
T Consensus 137 ~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 196 (459)
T 4fce_A 137 DN--PSGYGRIVRE-NGDVVGIVEHKDASDAQ-----------------REINEINTGILVANGRDLKRWLSLLDNNNAQ 196 (459)
T ss_dssp SC--CTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHHTCCCCSTT
T ss_pred CC--CCcccEEEeC-CCcEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHHhCccccC
Confidence 65 4679998887 79999999997532210 134789999999999988777765432 2
Q ss_pred CCchhhhhHHhhhhc-CceEEEEecCeE--eecCCHHHHHHHHHHhhccC------CCccc-------cCCCCCCCCCCc
Q 009817 329 SNDFGSEIIPAAIME-HDVQAYIFRDYW--EDIGTIKSFYEANMALTKES------PAFHF-------YDPKTPFYTSPR 392 (524)
Q Consensus 329 ~~d~~~dii~~li~~-~~V~~y~~~~~w--~dIgt~~d~~~An~~l~~~~------~~~~~-------~~~~~~i~~~~~ 392 (524)
...+..++++.+++. .++.+|.++++| .+|+|++||..|+..+..+. ....+ +++...+..++.
T Consensus 197 ~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~ 276 (459)
T 4fce_A 197 GEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDIT 276 (459)
T ss_dssp CSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCE
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcE
Confidence 334567888888776 689999999866 66999999999987665331 01111 222223334444
Q ss_pred cCCCeEEc-------------CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-Hh
Q 009817 393 FLPPTKID-------------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 456 (524)
Q Consensus 393 i~p~~~i~-------------~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~ 456 (524)
+.|.+.|. ++.|.++.||++|.|+ ++.|.+++||.+|.||++|.|. ++.+.++..++..+++ .+
T Consensus 277 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~ 356 (459)
T 4fce_A 277 IDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKA 356 (459)
T ss_dssp ECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEE
T ss_pred ECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeee
Confidence 44444332 2344456666666665 4556666666666666666665 5555555555555444 34
Q ss_pred hhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 457 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
.++++ +.|++++.|.+|+||+|+.||.++++.+.+. ...++++..|+.|. +.||++++|++|++|
T Consensus 357 ~i~~~---~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV 430 (459)
T 4fce_A 357 RLGKG---SKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTV 430 (459)
T ss_dssp EECTT---CEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred EEcCC---CEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 45555 5666666667889999999999999888541 23445555555553 366777777777654
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=349.34 Aligned_cols=378 Identities=20% Similarity=0.261 Sum_probs=260.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
.+|.+||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+. . ++
T Consensus 4 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~---~~- 70 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLA-----N---EQ- 70 (456)
T ss_dssp CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTT-----T---CC-
T ss_pred CcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhh-----c---CC-
Confidence 457899999999999985 689999999999 9999999999999999999999998766655542 1 11
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
++++... +.+||+++++.++.+++ ..+.||+++||+ +...++.++++.|.+ +++++++.+
T Consensus 71 --~~~v~~~---------~~~g~~~~~~~~~~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~ 132 (456)
T 2v0h_A 71 --VNWVLQT---------EQLGTAHAVQQAAPFFK-----DNENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVN 132 (456)
T ss_dssp --CEEEECS---------CCCCHHHHHHHHGGGCC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEE
T ss_pred --cEEEeCC---------CCCCcHHHHHHHHHhcC-----CCCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEee
Confidence 3444322 13699999999987663 147999999999 445678999998865 578888777
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-- 328 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~-- 328 (524)
..+ +..|+.+..| +|++..|.|||..... ....+++++|+|+|+++.|.+.++...+.
T Consensus 133 ~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 192 (456)
T 2v0h_A 133 LDN--PTGYGRIIRE-NGNVVAIVEQKDANAE-----------------QLNIKEVNTGVMVSDGASFKKWLARVGNNNA 192 (456)
T ss_dssp CSS--CTTSCEEEEE-TTEEEEEECTTTCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCST
T ss_pred cCC--CCccceEEEc-CCcEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhccccc
Confidence 765 4568988887 8899999998763210 01246889999999999877676543322
Q ss_pred -CCchhhhhHHhhhhc-CceEEEEecCe--EeecCCHHHHHHHHHHhhccC------CCccccCC-CCCCCCCCccCCCe
Q 009817 329 -SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDP-KTPFYTSPRFLPPT 397 (524)
Q Consensus 329 -~~d~~~dii~~li~~-~~V~~y~~~~~--w~dIgt~~d~~~An~~l~~~~------~~~~~~~~-~~~i~~~~~i~p~~ 397 (524)
...+..++++.++.. .++..|.++++ |.+|+|++||..|++.+..+. ....+++| ...+...+.+++++
T Consensus 193 ~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~ 272 (456)
T 2v0h_A 193 QGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDV 272 (456)
T ss_dssp TCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSSC
T ss_pred cccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCCC
Confidence 234567888887776 58999999765 569999999999998765431 12223333 22333444455555
Q ss_pred EEc-Ceee-eceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCccceEeCC---
Q 009817 398 KID-NCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGR--- 469 (524)
Q Consensus 398 ~i~-~~~i-~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~~~~~Ig~--- 469 (524)
.|+ ++.| .+++||++|.|+ ++.|++++||++|.|+++|.|.++.+..+..++..+.+ .+.++++ +.||+
T Consensus 273 ~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~---~~ig~~~~ 349 (456)
T 2v0h_A 273 EIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAE---THVGNFVE 349 (456)
T ss_dssp EECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTT---CEEEEEEE
T ss_pred EEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCC---CEECCCCE
Confidence 553 2444 357777777777 57777777888887777777776666666555544433 2233333 23322
Q ss_pred --------CcEE------eeeEECCCCEECCCcEEeCCCC----CCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 470 --------NTKI------RNCIIDKNVKIGKDVVIVNKDE----ADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 470 --------~~~I------~~~iI~~~~~Ig~~~~i~~~~e----~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
++.| .++.||+||.||.+++|.+.+. ...++++..|+.+. +.||++++|++|++|
T Consensus 350 i~~~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v 427 (456)
T 2v0h_A 350 IKKSTVGKGSKVNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTI 427 (456)
T ss_dssp EESCEECTTCEEEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEE
T ss_pred EeccEECCCCEeccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 2222 3468888888888888877431 23445555555543 356666777666654
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=301.14 Aligned_cols=243 Identities=19% Similarity=0.279 Sum_probs=195.6
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCcc---
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTN--- 169 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~--- 169 (524)
.|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+ +.....
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 80 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTN 80 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CC
T ss_pred ceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhccc
Confidence 47899999999999999999999999999999 9999999999999999999999999888877764221 110000
Q ss_pred ------------cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-----HHH
Q 009817 170 ------------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-----YMD 232 (524)
Q Consensus 170 ------------~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-----l~~ 232 (524)
++ ..+.++. +. +.+||+++|++++.++. .++|+|++||++++.+ +.+
T Consensus 81 ~~~~~~~~~~~~~~-~~i~~~~--~~-------~~~Gt~~al~~a~~~l~------~~~~lv~~~D~~~~~~~~~~~l~~ 144 (281)
T 3juk_A 81 KENALKSIRNIIEK-CCFSYVR--QK-------QMKGLGHAILTGEALIG------NEPFAVILADDLCISHDHPSVLKQ 144 (281)
T ss_dssp HHHHHHHHHHHHHH-CEEEEEE--CS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEEECTTSCCHHHH
T ss_pred chhhhhhhhccccC-ccEEEEe--cC-------CCCCcHHHHHHHHHHcC------CCCEEEEeCCeeccCccchHHHHH
Confidence 11 1233332 22 24699999999998885 3799999999999988 999
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECC--CC--cEEEEEecCCcccccccccccccccCCccccccCCcceee
Q 009817 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDN--MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308 (524)
Q Consensus 233 ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~--~g--~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~ 308 (524)
+++.|.++++ .++++..++...+++||++.+|+ +| +|..|.|||..... .++++++
T Consensus 145 l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~ 204 (281)
T 3juk_A 145 MTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVI 204 (281)
T ss_dssp HHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEE
Confidence 9999998887 67777777655578899999987 78 99999999974321 2478899
Q ss_pred eEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhcc
Q 009817 309 GVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 309 GIYvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~ 374 (524)
|+|+|++++|. .++...+. ...+..++++.+++++++.+|.++++|.||||+++|++|++.+++.
T Consensus 205 GiYi~~~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 205 GRYILTPDIFE-ILSETKPGKNNEIQITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp EEEEECTTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHH-HHHhcCCCCCCceeHHHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 99999999986 45543222 2233478999999888999999999999999999999999998864
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-34 Score=283.02 Aligned_cols=236 Identities=20% Similarity=0.340 Sum_probs=193.5
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCc-hhHHHHHHHhhhcCCcccC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~~ 171 (524)
+.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++.. +++.+++ +.+..|+
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~-----~~~~~~~ 96 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFL-----GSGQEFG 96 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH-----TTSGGGT
T ss_pred cCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHH-----hhccccC
Confidence 568999999999999999999999999999999 99999999999999999999999753 5565554 3333454
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
. .+.+.. +. +..||+++|+.++.++. .++|++++||++++.++.++++.|.++++++++++.+.
T Consensus 97 ~-~i~~~~--~~-------~~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 160 (269)
T 4ecm_A 97 V-SFTYRV--QD-------KAGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSV 160 (269)
T ss_dssp C-EEEEEE--CS-------SCCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEEC
T ss_pred c-eEEEee--CC-------ccCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEEC
Confidence 2 233332 21 23699999999988874 38999999999999999999999999899999999887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC--CC
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--TS 329 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~--~~ 329 (524)
++ +..||++..|+ |+|..|.|||..+. ++++++|+|+|++++|. .++...+ ..
T Consensus 161 ~~--~~~~g~v~~d~-g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~~g 215 (269)
T 4ecm_A 161 DD--PERFGVANIQN-RKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSARG 215 (269)
T ss_dssp SC--GGGSEEEEEET-TEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCTTS
T ss_pred CC--CCCceEEEEcC-CEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCCCC
Confidence 65 56899999985 99999999986432 47899999999999885 4443322 12
Q ss_pred CchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccC
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
..+..++++.+++++++.+|.++++|.||||++||..|++.+.+..
T Consensus 216 e~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 216 ELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp CBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred eeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 2335789999998889999999999999999999999999988654
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=280.92 Aligned_cols=245 Identities=22% Similarity=0.283 Sum_probs=191.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hc-----
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~----- 165 (524)
++.|++||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...| +.
T Consensus 6 ~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 84 (302)
T 2e3d_A 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_dssp CSCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC-
T ss_pred hcccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhh
Confidence 4568999999999999999999999999999999 9999999999999999999999998888888874321 00
Q ss_pred CCc-----------ccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc------
Q 009817 166 NGT-----------NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM------ 228 (524)
Q Consensus 166 ~~~-----------~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~------ 228 (524)
.+. .++ ..+.++... +..||+++|+.++.++. .++|++++||++++.
T Consensus 85 ~~~~~~l~~~~~~~~~~-~~i~~~~~~---------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~~~ 148 (302)
T 2e3d_A 85 RVKRQLLDEVQSICPPH-VTIMQVRQG---------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLS 148 (302)
T ss_dssp ---CHHHHHHHHTSCTT-CEEEEEECS---------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEECTTSSCTT
T ss_pred ccchhhhhhhhhccccC-cceEEeeCC---------ccCCHHHHHHHHHHHcC------CCcEEEEcCCccccCccccch
Confidence 000 011 123333321 23699999999998874 379999999999873
Q ss_pred --CHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEEC----CCC---cEEEEEecCCcccccccccccccccCCcccc
Q 009817 229 --DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (524)
Q Consensus 229 --dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id----~~g---~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~ 299 (524)
++.++++.|.+.++ .++++.+..+ ++.||++..+ ++| +|..|.|||.....
T Consensus 149 ~~~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~----------------- 208 (302)
T 2e3d_A 149 QDNLAEMIRRFDETGH-SQIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA----------------- 208 (302)
T ss_dssp TSTHHHHHHHHHHHCC-EEEEEEECSC--GGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC-----------------
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEEccC--CCCccEEEecccccCCCCceeEEEEEECCCCCcc-----------------
Confidence 79999999988777 7777777643 5689999874 567 89999999864211
Q ss_pred ccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCC
Q 009817 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (524)
Q Consensus 300 ~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~ 376 (524)
.++++++|+|+|++++|. .++...+. ...+..++++.+++++++.+|.++++|.||||+++|.+|++.++.+.+
T Consensus 209 --~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~~~ 284 (302)
T 2e3d_A 209 --PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHN 284 (302)
T ss_dssp --SCSEEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHHCT
T ss_pred --ccceEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhcCc
Confidence 247899999999999875 44443332 223457888888877799999999999999999999999987765544
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=271.69 Aligned_cols=245 Identities=18% Similarity=0.282 Sum_probs=179.8
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhh-cCCccc--
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYF-GNGTNF-- 170 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~-~~~~~~-- 170 (524)
+|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+. +.+..+
T Consensus 2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (259)
T 1tzf_A 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccc
Confidence 47899999999999999999999999999999 99999999999999999999999998888888853221 111111
Q ss_pred CCCeEEEEccccCCCC---CCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEE
Q 009817 171 GDGFVEVLAATQTPGE---SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 247 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e---~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~ 247 (524)
+.+.++++.....+-+ ..+....||+++|+.++.++. ..++|++++||+++..++.++++.|.+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 81 AENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred cccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-----CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEE
Confidence 0011223221100000 000113699999999987763 24789999999999999999999998888887775
Q ss_pred EEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC
Q 009817 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (524)
Q Consensus 248 ~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~ 327 (524)
... . ++.||.+.+| +|+|..|.|||... .+++++|+|+|++++|.. ++ .
T Consensus 156 ~~~--~--~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~~-l~---~ 204 (259)
T 1tzf_A 156 ATF--P--PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVIDL-ID---N 204 (259)
T ss_dssp EEC--C--CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGGG-CC---S
T ss_pred Eec--C--CCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHHh-hc---c
Confidence 432 2 4579999988 79999999998642 257899999999998743 22 1
Q ss_pred CCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccC
Q 009817 328 TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
...++..++++.+++++++.+|.++++|.||||++||..|++.+....
T Consensus 205 ~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~ 252 (259)
T 1tzf_A 205 DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhcCC
Confidence 223455788888888889999999999999999999999999887643
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=280.58 Aligned_cols=247 Identities=18% Similarity=0.253 Sum_probs=173.8
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-----h-cC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-----F-GN 166 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-----~-~~ 166 (524)
..|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...| + ..
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 91 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAAR 91 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTT
T ss_pred CccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhc
Confidence 458999999999999999999999999999999 9999999999999999999999998888877764211 0 00
Q ss_pred C---------cccCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc---cCHHHHH
Q 009817 167 G---------TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR---MDYMDFI 234 (524)
Q Consensus 167 ~---------~~~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~---~dl~~ll 234 (524)
+ ..++ ..+.++... +..||+++|+.++.++. .++|++++||++++ .++.+++
T Consensus 92 ~~~~~~~~~~~~~g-~~i~~~~~~---------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~l~ 155 (297)
T 2ux8_A 92 GKSLDVLDGTRLKP-GNIAYVRQQ---------EPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQMV 155 (297)
T ss_dssp TCCGGGGTTSCCST-TSEEEEECC---------SCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHHHH
T ss_pred cchhhhhhhcccCC-CceEEEeCC---------CCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHHHH
Confidence 0 0011 125444322 23699999999998874 37999999999987 5699999
Q ss_pred HHHHHcCCcEEEEEEEcCCCCCCcceEEEECC--CC--cEEEEEecCCcccccccccccccccCCccccccCCcceeeeE
Q 009817 235 QSHVDRDADITISCAAVGESRASDYGLVKIDN--MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (524)
Q Consensus 235 ~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~--~g--~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GI 310 (524)
+.|.+.++ .++++.+.+...++.||++..|+ +| +|..|.|||..... .++++++|+
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~Gi 215 (297)
T 2ux8_A 156 DAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIGR 215 (297)
T ss_dssp HHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEEE
T ss_pred HHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEEE
Confidence 99988776 56666665433456799887763 55 89999999863211 246889999
Q ss_pred EEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCC
Q 009817 311 YVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA 377 (524)
Q Consensus 311 Yvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~ 377 (524)
|+|++++|. .++...+. ...+..++++.+++++++.+|.++++|.||||++||.+|++.++...+.
T Consensus 216 yi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~~~ 283 (297)
T 2ux8_A 216 YILQPEVMR-ILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRPD 283 (297)
T ss_dssp EEECTHHHH-HHHHTC--------CCTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHCTT
T ss_pred EEECHHHHH-HHHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcChh
Confidence 999999875 44543332 1222467888888878999999999999999999999999888766543
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=275.32 Aligned_cols=248 Identities=20% Similarity=0.268 Sum_probs=188.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hc-----C
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----N 166 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~-----~ 166 (524)
+.|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+ +. .
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 458999999999999999999999999999999 9999999999999999999999998888876653211 00 0
Q ss_pred C--------cc--cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHH
Q 009817 167 G--------TN--FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFI 234 (524)
Q Consensus 167 ~--------~~--~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll 234 (524)
+ .. ++ ..+.++... +.+||+++|+.++.++.+ ..+.|+|++||++++ .++.+++
T Consensus 90 ~~~~~~~~~~~~~~g-~~i~~~~~~---------~~~Gt~~al~~a~~~l~~----~~d~~lv~~~D~~~~~~~~l~~l~ 155 (323)
T 2pa4_A 90 GKTDQVEIIRRAADL-IKAVPVTQD---------KPLGLGHAVGLAESVLDD----DEDVVAVMLPDDLVLPTGVMERMA 155 (323)
T ss_dssp TCHHHHHHTTHHHHH-CEEEEEECS---------SCCCHHHHHHTTGGGSCS----SCCEEEEECTTEEEESSCHHHHHH
T ss_pred chhhhhhhhhccccC-cceEEEeCC---------ccCCcHHHHHHHHHHhcC----CCCeEEEEeCCcccCchHHHHHHH
Confidence 0 00 11 124444321 236999999998876641 123399999999987 5699999
Q ss_pred HHHHHcCCcEEEEEEEcCCCCCCcceEEEEC----CCC--cEEEEEecCCcccccccccccccccCCccccccCCcceee
Q 009817 235 QSHVDRDADITISCAAVGESRASDYGLVKID----NMG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308 (524)
Q Consensus 235 ~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id----~~g--~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~ 308 (524)
+.|.+.++ .++++.+......+.||++.+| +++ +|..|.|||..... .++++++
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~ 215 (323)
T 2pa4_A 156 QVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAAT 215 (323)
T ss_dssp HHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEE
Confidence 99987765 5666666643345689999887 554 99999999863221 2468899
Q ss_pred eEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccCC
Q 009817 309 GVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (524)
Q Consensus 309 GIYvf~~~vL~~ll~~~~~~--~~d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~ 376 (524)
|+|+|++++|.. ++...+. ...+..++++.++++ .++.+|.++++|.||||++||..|++.++...+
T Consensus 216 GiY~~~~~~~~~-l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~~ 285 (323)
T 2pa4_A 216 GRYLLDRKIFDA-LRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHP 285 (323)
T ss_dssp EEEEEETHHHHH-HHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTCT
T ss_pred EEEEECHHHHHH-HHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcCh
Confidence 999999998864 4443332 122347889988887 799999999999999999999999988876554
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=271.83 Aligned_cols=256 Identities=15% Similarity=0.173 Sum_probs=189.0
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceee--cCcchhHHHHHHHHHhcCCCeEEEEeccCc-hhHHHHHHHhhhcCCc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPV--AGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGT 168 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpI--gGk~pLId~~l~~l~~sGi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~ 168 (524)
|.+|.+||||||.||||+| ||+|+|| +|+ |||+|+++++.++|+++|+|++++.. +++.+|+...+
T Consensus 3 ~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~----- 71 (303)
T 3pnn_A 3 AMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKY----- 71 (303)
T ss_dssp CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHH-----
T ss_pred CCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHh-----
Confidence 4468999999999999998 6999999 589 99999999999999999999999985 78888876433
Q ss_pred ccCCCeEEEEccccC---CC---CCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHH--
Q 009817 169 NFGDGFVEVLAATQT---PG---ESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD-- 239 (524)
Q Consensus 169 ~~~~~~V~vl~~~q~---~~---e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~-- 239 (524)
.++ ..+.++..... ++ .....+.+||++||++++++++ ++|+|++||++++.+ +.++++.|.+
T Consensus 72 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~-------~~~lV~~gD~l~~~~~~~~l~~~~~~~~ 143 (303)
T 3pnn_A 72 EGR-IPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR-------EPFAVINADDFYGRNGFEVLARKLMTLE 143 (303)
T ss_dssp TTT-SCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC-------SCEEEEESSCBCCHHHHHHHHHHHHTTT
T ss_pred ccC-CcEEEEecccccccccccccccccccCCcHHHHHHHHHhcC-------CCEEEEECCeecCHHHHHHHHHHHHHhc
Confidence 121 12444322200 00 0000134699999999987763 799999999999876 8999999986
Q ss_pred -cCCcEEEEEEEcCCCCCCcc-----eEEEECCCCcEEEEEecCCccccccc----ccccccccCCccccccCCcceeee
Q 009817 240 -RDADITISCAAVGESRASDY-----GLVKIDNMGRIAQFAEKPSGANLKAM----QVDTSLLGFSPQEARKCPYVASMG 309 (524)
Q Consensus 240 -~~ad~tl~~~~~~~~~a~~~-----g~v~id~~g~V~~~~EKp~~~~~~~~----~v~t~~~~l~~~~~~~~~~l~~~G 309 (524)
+++++++++.+++++ .++| |++.+|++|+|+.|.|||........ ..+...+ ....++++++|
T Consensus 144 ~~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~------~~~~~~~i~~G 216 (303)
T 3pnn_A 144 GKQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKIC------TLAEDAPVSMN 216 (303)
T ss_dssp TCSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCEE------EECTTCEEEEE
T ss_pred cccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCccccccccccccccccc------cCCCCCEEEEE
Confidence 568899999888653 1345 78999999999999999975311000 0000000 00125789999
Q ss_pred EEEEeHHHHHHHHH-------hhC--CCCCchhhhhHHhhhhcC--ceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 310 VYVFKKDVLFKLLR-------WRY--PTSNDFGSEIIPAAIMEH--DVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 310 IYvf~~~vL~~ll~-------~~~--~~~~d~~~dii~~li~~~--~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
+|+|++++|..+-+ +.. .....+..++++.+++++ +|.+|.++++|.||||+++|..|+..+.+
T Consensus 217 iY~f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 217 MWGFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp EEEECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 99999999865432 121 223445678999998886 79999999999999999999999988764
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=266.47 Aligned_cols=228 Identities=11% Similarity=0.114 Sum_probs=172.9
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V 175 (524)
+||||||.||||+|+|..+||||+||+|+ |||+|+++++.+ +|+++|+|++++..+ +.+++.+.+- .++...+
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~----~~~~~~~ 75 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKAT----QLGIKQF 75 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHH----HHTCSSE
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHH----HcCCCCc
Confidence 79999999999999999999999999999 999999999999 799999999999876 5556643221 1211112
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
.++.. +. +.+||++||++++.++.+......++|+|++||+++ +.++.++ ..+++.++++.++++
T Consensus 76 ~~~~~-~~-------~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~- 141 (255)
T 4evw_A 76 YIAEL-HT-------ETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG- 141 (255)
T ss_dssp EEEEE-SS-------CCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS-
T ss_pred eEEEe-CC-------CCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC-
Confidence 22211 21 236999999999998831000134789999999998 4566543 246778999988865
Q ss_pred CCCcceEEEECCCC--cEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHH-HHHHHH----HhhCC
Q 009817 255 RASDYGLVKIDNMG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLL----RWRYP 327 (524)
Q Consensus 255 ~a~~~g~v~id~~g--~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~-vL~~ll----~~~~~ 327 (524)
+ .||++..|++| +|..|.||+.. ++++++|+|+|++. .|.+.+ +...+
T Consensus 142 -p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~ 196 (255)
T 4evw_A 142 -D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPSQ 196 (255)
T ss_dssp -S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCGG
T ss_pred -C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhcccc
Confidence 3 89999999888 99999999432 36899999999986 343333 22222
Q ss_pred ---CCCchhhhhHHhhhhc-CceEEEEec-CeEeecCCHHHHHHHHH
Q 009817 328 ---TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANM 369 (524)
Q Consensus 328 ---~~~d~~~dii~~li~~-~~V~~y~~~-~~w~dIgt~~d~~~An~ 369 (524)
..+.+..++++.++++ .++.+|.++ ++|.||||+++|.+|..
T Consensus 197 ~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~ 243 (255)
T 4evw_A 197 EWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLR 243 (255)
T ss_dssp GCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHH
T ss_pred cccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHh
Confidence 3455678999999876 579999996 99999999999999865
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=264.10 Aligned_cols=233 Identities=22% Similarity=0.367 Sum_probs=185.1
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~-~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++ +..+.+.+++ +++..|+.
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l-----~~g~~~g~ 76 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLL-----GDGSQFGV 76 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH-----TTSGGGTS
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHh-----hhccccCc
Confidence 47999999999999999999999999999999 99999999999999999999886 5566665555 34444542
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+.+.. +.. ..|++++++.++.++. .++++++.||+++ ..++.++++.|.+.+.++++++.++
T Consensus 77 -~i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 140 (295)
T 1lvw_A 77 -RFSYRV--QEE-------PRGIADAFIVGKDFIG------DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV 140 (295)
T ss_dssp -EEEEEE--CSS-------CCCGGGHHHHTHHHHT------TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred -eEEEee--CCC-------CCChHHHHHHHHHHhC------CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEEC
Confidence 233332 221 2599999999998885 2678888899865 6789999999987777788888887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--C
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--S 329 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~ 329 (524)
.+ +..||++.+|++|+|..|.|||..+. ++++++|+|+|+++++..+ +...+. .
T Consensus 141 ~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~~-~~~~~~~~g 196 (295)
T 1lvw_A 141 RD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEIA-RRIEPSDRG 196 (295)
T ss_dssp SC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHHH-HHCCCCTTS
T ss_pred CC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHHH-HhcCCcccC
Confidence 76 45799999999999999999986432 3688999999999998644 433322 1
Q ss_pred CchhhhhHHhhhhcCceEEEEec-Ce-EeecCCHHHHHHHHHHhh
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~-~~-w~dIgt~~d~~~An~~l~ 372 (524)
.....++++.+++.+++.++.+. ++ |.||||++||.+|+..+.
T Consensus 197 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 197 ELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 12346788888888888888875 75 999999999999998765
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=264.57 Aligned_cols=233 Identities=26% Similarity=0.409 Sum_probs=185.4
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~-~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
+|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++ +..+.+.+++ +++..|+.
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l-----~~g~~~g~ 75 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLL-----GDGSNWGL 75 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH-----TTSGGGTC
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHH-----hcccccCc
Confidence 47899999999999999999999999999999 99999999999999999998874 5566665555 34444542
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+.+.. +.. +.|++++++.++.++. .++++++.||+++ ..++.++++.|.+.+.++++++.++
T Consensus 76 -~i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 139 (293)
T 1fxo_A 76 -DLQYAV--QPS-------PDGLAQAFLIGESFIG------NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV 139 (293)
T ss_dssp -EEEEEE--CSS-------CCCGGGHHHHTHHHHT------TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred -eEEEee--CCC-------CCCHHHHHHHHHHHhC------CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEEC
Confidence 233332 221 3599999999998885 2789999999865 5789999999987777888888887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC-CC
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN 330 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~-~~ 330 (524)
.+ +..||++.+|++|+|..|.|||..+. ++++++|+|+|++++|..+ +...+. ..
T Consensus 140 ~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~~-~~~~~~~~g 195 (293)
T 1fxo_A 140 LD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVDIA-RDLKPSPRG 195 (293)
T ss_dssp SC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHHHH-HHCCCCTTS
T ss_pred CC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHHHH-HhcCcccCC
Confidence 66 45799999999999999999986432 3689999999999998644 433332 12
Q ss_pred -chhhhhHHhhhhcCceEEEEec-Ce-EeecCCHHHHHHHHHHhh
Q 009817 331 -DFGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (524)
Q Consensus 331 -d~~~dii~~li~~~~V~~y~~~-~~-w~dIgt~~d~~~An~~l~ 372 (524)
....++++.+++.+++.++... ++ |.||||++||.+|+..+.
T Consensus 196 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 196 ELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 2346888888888888888875 75 999999999999998765
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=265.59 Aligned_cols=234 Identities=23% Similarity=0.361 Sum_probs=185.0
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEec-cCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~-~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++ +..+.+.+++ +++..|+.
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l-----~~g~~~g~ 76 (296)
T 1mc3_A 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLL-----GDGSEFGI 76 (296)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH-----TTSGGGTC
T ss_pred ccEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHH-----hcccccCc
Confidence 37999999999999999999999999999999 99999999999999999999886 5566665555 33334542
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.+.+.. ++. ..||+++++.++.++. .++++++.||+++ ..++.++++.|.+.+.++++++.++
T Consensus 77 -~i~~~~--~~~-------~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 140 (296)
T 1mc3_A 77 -QLEYAE--QPS-------PDGLAQAFIIGETFLN------GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV 140 (296)
T ss_dssp -EEEEEE--CSS-------CCCSTHHHHHTHHHHT------TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC
T ss_pred -eEEEec--cCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEEC
Confidence 233332 221 3599999999998885 2678888899865 6789999999977777788888887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC-CC
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-SN 330 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~-~~ 330 (524)
.+ +..||++.+|++|+|..|.|||..+. ++++++|+|+|+++++.. ++...+. ..
T Consensus 141 ~d--p~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~-~~~~~~~~~g 196 (296)
T 1mc3_A 141 MD--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEY-AKQVKPSERG 196 (296)
T ss_dssp SC--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHHH-HHSCCCCSSS
T ss_pred CC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHHH-HHhcCccccC
Confidence 76 45799999999999999999986432 368899999999999764 4443332 12
Q ss_pred -chhhhhHHhhhhcCceEEEEec-Ce-EeecCCHHHHHHHHHHhhc
Q 009817 331 -DFGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 331 -d~~~dii~~li~~~~V~~y~~~-~~-w~dIgt~~d~~~An~~l~~ 373 (524)
....++++.+++.+++.++.+. ++ |.||||++||.+|+..+..
T Consensus 197 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 197 ELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 2346788888888888888875 75 9999999999999987753
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=261.05 Aligned_cols=241 Identities=17% Similarity=0.323 Sum_probs=155.1
Q ss_pred CceeEEEEeCCCCCcccCCcc-CCCccceee-cCcchhHHHHHHHHHhcCCCeEEEEeccCc-hhHHHHHHHhhhcCCcc
Q 009817 93 KNVAAIILGGGAGTKLFPLTL-RAATPAVPV-AGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTN 169 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~-~~PKpLlpI-gGk~pLId~~l~~l~~sGi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~ 169 (524)
.+|++||||||.||||+|||. .+||||+|| +|+ |||+|+++++.++ +++|+|++++.. +.+.+++. .+
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~-----~~-- 73 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIK-----NE-- 73 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTT-----TT--
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHH-----Hh--
Confidence 358999999999999999996 799999999 588 9999999999999 999999999874 35555542 21
Q ss_pred cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccC-HHHHHHH---HHHcCCcE
Q 009817 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQS---HVDRDADI 244 (524)
Q Consensus 170 ~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~~---h~~~~ad~ 244 (524)
|+...+.++.... .+||+++++.++.++. ..+.|++++||+++ +.+ |.++++. |.+.++++
T Consensus 74 ~~~~~~~~i~~~~---------~~gt~~al~~a~~~l~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (308)
T 2qh5_A 74 IKNKSVGFLLESL---------SKNTANAIALSALMSD-----KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLV 139 (308)
T ss_dssp CSSCEEEEEEESS---------CCCHHHHHHHHHHTSC-----TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hCCCccEEEeCCC---------CCChHHHHHHHHHHhC-----CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEE
Confidence 3321244443222 3699999999987763 23469999999998 666 8999987 77777888
Q ss_pred EEEEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 245 TISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 245 tl~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
|+.+.+..+ .+.||++.+|++++|..|.|||......... ...++++++|+|+|++++|...++.
T Consensus 140 t~~~~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~~-------------~~g~~~~n~Giy~~~~~~ll~~l~~ 204 (308)
T 2qh5_A 140 TFGVSIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEFQ-------------KSGGFYFNSGMFVFQAGVFLDELKK 204 (308)
T ss_dssp EEEEECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHHH-------------HHCCEEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHHh-------------hcCCeEEEeEEEEEEHHHHHHHHHH
Confidence 888877654 3579999988889999999999754211000 0013689999999999987555543
Q ss_pred hCCC--------------C----Cchh---hhhHHh---------hhhc-CceEEEEecCeEeecCCHHHHHHHHHHh
Q 009817 325 RYPT--------------S----NDFG---SEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 325 ~~~~--------------~----~d~~---~dii~~---------li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l 371 (524)
..+. . .++. .++++. ++++ .++.+|.++++|.||||+++|.+++...
T Consensus 205 ~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 205 HAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp HCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred hChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 3221 0 1111 344442 4554 6899999999999999999999998754
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=250.79 Aligned_cols=233 Identities=18% Similarity=0.276 Sum_probs=169.6
Q ss_pred eeEEEEeCCCCCcccCCc-cCCCccceeecC-cchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHHhhhcCCccc
Q 009817 95 VAAIILGGGAGTKLFPLT-LRAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT-~~~PKpLlpIgG-k~pLId~~l~~l~~s-Gi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~ 170 (524)
|.+||||||.||||+||| +.+||+|+|++| + |||+|+++++.++ |+++|+|+|++.. +.+.+++ +....+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~-pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l-----~~~~~~ 75 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNK-SLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKEL-----PELPDE 75 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTB-CHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHC-----TTSCGG
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCC-cHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHh-----hccccc
Confidence 789999999999999999 779999999999 7 9999999999997 8999999999864 3344443 221111
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc--CH----HHHHHHHHHcCCcE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DY----MDFIQSHVDRDADI 244 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~--dl----~~ll~~h~~~~ad~ 244 (524)
.+ ++. .. .+||++++..+...+. ..+.+++++||+++.. +| .++++.|.+.++.+
T Consensus 76 ---~i-i~e-~~---------~~gta~ai~~a~~~~~-----~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~v 136 (336)
T 2x65_A 76 ---NI-IAE-PM---------KKNTAPACFIGTKLAD-----DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLF 136 (336)
T ss_dssp ---GE-EEE-SS---------CCCHHHHHHHHHTTSC-----TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEE
T ss_pred ---eE-EeC-CC---------CCCcHHHHHHHHHhhC-----CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeE
Confidence 12 222 11 2599999998875432 2467999999998854 44 44455577667777
Q ss_pred EEEEEEcCCCCCCcceEEEECCC-----CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHH
Q 009817 245 TISCAAVGESRASDYGLVKIDNM-----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (524)
Q Consensus 245 tl~~~~~~~~~a~~~g~v~id~~-----g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~ 319 (524)
|+.+.+..+ .+.||+++.+++ ++|..|.|||.....+... ....+++++|+|+|++++|.
T Consensus 137 t~~i~p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~-------------~~g~y~~n~Giy~~~~~~ll 201 (336)
T 2x65_A 137 TFGIVPTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFV-------------ESGRFLWNSGMFLWKAREFI 201 (336)
T ss_dssp EEEECCCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHH-------------HHTCEEEEEEEEEEEHHHHH
T ss_pred EEEeecccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHHH-------------hcCCeEEEeeeEEEEHHHHH
Confidence 777766544 367999998765 7999999999764321110 01237899999999999886
Q ss_pred HHHHhhCCC----------CC-chhhhhHHh---------hhhc-CceEEEEecCeEeecCCHHHHHHH
Q 009817 320 KLLRWRYPT----------SN-DFGSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEA 367 (524)
Q Consensus 320 ~ll~~~~~~----------~~-d~~~dii~~---------li~~-~~V~~y~~~~~w~dIgt~~d~~~A 367 (524)
..++...+. .. +|..++++. ++++ .+++++.++++|.||||+++|+++
T Consensus 202 ~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 202 EEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 555443221 01 344566665 3444 789999999999999999999999
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=240.04 Aligned_cols=221 Identities=17% Similarity=0.231 Sum_probs=162.8
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+|.+||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.. +.+.| +
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~-~~~~~-------~-- 93 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDY-LKEKY-------G-- 93 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTH-HHHHH-------C--
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHH-HHHhC-------C--
Confidence 57899999999999999999999999999999 9999999999999999999999998777753 33332 2
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
+.++...+. ...||+++++.++..+ +++++++||+++..++ ++.+.+.++.++ ....+
T Consensus 94 -~~iv~~~~~-------~~~g~~~al~~a~~~~--------~~~lv~~~D~~~~~~~---~~~~~~~~~~~t---~~~~~ 151 (254)
T 1jyk_A 94 -VRLVFNDKY-------ADYNNFYSLYLVKEEL--------ANSYVIDADNYLFKNM---FRNDLTRSTYFS---VYRED 151 (254)
T ss_dssp -CEEEECTTT-------TTSCTHHHHHTTGGGC--------TTEEEEETTEEESSCC---CCSCCCSEEEEE---CEESS
T ss_pred -cEEEECCCc-------cCCCcHHHHHHHHHHC--------CCEEEEeCCcccCHHH---HHHHHhCCceEE---EEccc
Confidence 344443221 1259999999887554 3589999999886553 222222222222 22333
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH---HHHHHhhCCC--
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL---FKLLRWRYPT-- 328 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL---~~ll~~~~~~-- 328 (524)
+ ...|+++ +|++|+|..|.|||. ..++++|+|+|+++.+ ..+++...+.
T Consensus 152 ~-~~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~ 205 (254)
T 1jyk_A 152 C-TNEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGE 205 (254)
T ss_dssp C-SSCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTTTC
T ss_pred C-CCCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCC
Confidence 2 1358755 888999999999753 1468999999998744 3334432221
Q ss_pred -CCchhhhhHHhhhhcCceEEEEec-CeEeecCCHHHHHHHHHHhhc
Q 009817 329 -SNDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 -~~d~~~dii~~li~~~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~ 373 (524)
...|..++++.+++..++.++.++ ++|.+|+|++||..|++.+.+
T Consensus 206 ~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~ 252 (254)
T 1jyk_A 206 FVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKN 252 (254)
T ss_dssp CTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred ccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence 334567788888778899999998 799999999999999988764
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=243.55 Aligned_cols=233 Identities=19% Similarity=0.297 Sum_probs=165.9
Q ss_pred eeEEEEeCCCCCcccCCc-cCCCccceeecC-cchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 95 VAAIILGGGAGTKLFPLT-LRAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT-~~~PKpLlpIgG-k~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|+|++..... + +.+++.
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~-pli~~~l~~l~~~~~~~~iiVvt~~~~~~~---i-~~~l~~----- 72 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAV---A-RPYADG----- 72 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHH---H-GGGCSS-----
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcCCCC-hHHHHHHHHHhCcCCCCCEEEEcChHHHHH---H-HHHhcc-----
Confidence 799999999999999999 689999999999 7 9999999999998 8999999999854221 2 233221
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccc--CHHHHHH----HHHHcCCcEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFIQ----SHVDRDADIT 245 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~--dl~~ll~----~h~~~~ad~t 245 (524)
..+ ++.. +..||++++..+.. +... ...+.|++++||+++.. .|.++++ .|.+ ++.+|
T Consensus 73 -~~~-i~e~----------~~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt 136 (337)
T 2cu2_A 73 -IRL-LLEP----------LGRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVA 136 (337)
T ss_dssp -SEE-EEES----------SCCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEE
T ss_pred -Cce-EecC----------CCCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEE
Confidence 112 3321 13599999998887 5321 12478999999998853 3544444 3443 56677
Q ss_pred EEEEEcCCCCCCcceEEEECCC----CcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHH
Q 009817 246 ISCAAVGESRASDYGLVKIDNM----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (524)
Q Consensus 246 l~~~~~~~~~a~~~g~v~id~~----g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~l 321 (524)
+.+.+..+ .+.||+++.+++ ++|..|.|||.....+.+. ...+++++|+|+|++++|...
T Consensus 137 ~~i~p~~~--~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~--------------~~g~~~n~Giy~f~~~~ll~~ 200 (337)
T 2cu2_A 137 LGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI--------------RKGYVWNGGVFAFAPATMAEL 200 (337)
T ss_dssp EEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH--------------HTTCEEEEEEEEECHHHHHHH
T ss_pred EeeccCCC--CCCceEEEECCcccccCeEEEEEeCCChHHHHHHh--------------hcCCEEEEEEEEEeHHHHHHH
Confidence 77766544 357999998866 8999999999754321110 011689999999999988555
Q ss_pred HHhhCCCC-Cch--------hhhhHHh---------hhhc-CceEEEEecCeEeecCCHHHHHHHHH
Q 009817 322 LRWRYPTS-NDF--------GSEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (524)
Q Consensus 322 l~~~~~~~-~d~--------~~dii~~---------li~~-~~V~~y~~~~~w~dIgt~~d~~~An~ 369 (524)
++...+.. ..+ ..+.++. ++++ .+++++.++++|.||||+++|+++..
T Consensus 201 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~ 267 (337)
T 2cu2_A 201 FRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (337)
T ss_dssp HHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhh
Confidence 55433210 000 1234443 3444 68999999999999999999999843
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=221.98 Aligned_cols=239 Identities=13% Similarity=0.203 Sum_probs=170.1
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
++.+||||||.|||| | ||+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++. .++
T Consensus 2 ~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~--------~~g-- 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQ--------AFG-- 62 (252)
T ss_dssp CEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH--------HTT--
T ss_pred ceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHH--------HcC--
Confidence 478999999999999 4 7999999999 99999999999999999999995 466766664 133
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
++++...+. +..||++ +..+...+. ....+.|++++||. +. ..++.++++.|.+.++++++++.++
T Consensus 63 -~~v~~~~~~-------~~~Gt~~-~~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v 130 (252)
T 3oam_A 63 -GVVCMTSPN-------HQSGTER-LAEVVAKMA---IPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEI 130 (252)
T ss_dssp -CEEEECCTT-------CCSHHHH-HHHHHHHTT---CCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEE
T ss_pred -CEEEEcCCC-------CCCcHHH-HHHHHHhcC---cCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeec
Confidence 333332221 2369988 455555542 01347899999998 33 5678999999998888999999988
Q ss_pred CCCCCCcc-----eEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 252 GESRASDY-----GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 252 ~~~~a~~~-----g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
++ +++| |.|..|++|+++.|.+||-.....+.... . .....+++.++|+|+|++++|..+....
T Consensus 131 ~~--~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~-------~-~~~~~~~~~n~GiY~~~~~~l~~~~~~~- 199 (252)
T 3oam_A 131 ED--EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKA-------D-KAIVQPLLRHIGIYAYRAGFINTYLDWQ- 199 (252)
T ss_dssp CC--HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSS-------S-CCCCSCEEEEEEEEEEETTHHHHHHHSC-
T ss_pred CC--HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccccc-------c-ccccccceEEEEEEEcCHHHHHHHHcCC-
Confidence 76 3455 99999999999999999854321100000 0 0001357899999999999998776542
Q ss_pred CCCCchhh--hhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHhhcc
Q 009817 327 PTSNDFGS--EIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 327 ~~~~d~~~--dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l~~~ 374 (524)
++..+... +.+..+-...+|.++..++ +|.||||++||..|+..+..+
T Consensus 200 ~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 200 PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 22111111 2333323357899987754 689999999999999877653
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=208.14 Aligned_cols=237 Identities=14% Similarity=0.186 Sum_probs=160.0
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
++.+||||||.||||. ||+|+||+|+ |||+|+++++.++|+++|+|+|+ .+.+.+++. .++
T Consensus 9 ~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~--------~~g-- 69 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAE--------DFG-- 69 (256)
T ss_dssp CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH--------HTT--
T ss_pred CceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHH--------HcC--
Confidence 4789999999999993 8999999999 99999999999999999999986 466665553 233
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHc-CCcEEEEEEE
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~-~ad~tl~~~~ 250 (524)
++++...+ ++..||+. +++++..+.. ...+.|+++.||. ++ ...+.++++.|.+. ++++++++.+
T Consensus 70 -~~v~~~~~-------~~~~Gt~~-i~~a~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~ 137 (256)
T 3tqd_A 70 -AVVCMTSS-------DHQSGTER-IAEAAVALGF---EDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTP 137 (256)
T ss_dssp -CEEEECCT-------TCCSHHHH-HHHHHHHTTC---CTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEE
T ss_pred -CeEEEeCC-------CCCCcHHH-HHHHHHHhCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeE
Confidence 23332222 23468876 7777766620 1358999999999 44 45689999999874 5678888887
Q ss_pred cCCC----CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 251 VGES----RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 251 ~~~~----~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
+.+. .+..++ |.+|++|+++.|.+||......... .+++.....+++...|+|.|++++|..+... .
T Consensus 138 v~~~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~-------~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l-~ 208 (256)
T 3tqd_A 138 ITEVDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFS-------DKENLQLNGSHYRHVGIYAYRVGFLEEYLSW-D 208 (256)
T ss_dssp CCCHHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTT-------CGGGCCCSSCCEEEEEEEEEEHHHHHHHHHS-C
T ss_pred cCCHHHhhCCCccE-EEECCCCEEeEEecCCCCCCCcccc-------cccccccCCcceEEEEEEEcCHHHHHHHHhC-C
Confidence 7432 122233 5689999999999998643211000 0000011135789999999999999876543 2
Q ss_pred CCCCchhh--hhHHhhhhcCceEEEEecCe-EeecCCHHHHHHHHHH
Q 009817 327 PTSNDFGS--EIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMA 370 (524)
Q Consensus 327 ~~~~d~~~--dii~~li~~~~V~~y~~~~~-w~dIgt~~d~~~An~~ 370 (524)
++..+... +.+..+-...+|.++..+++ |.|||||+||..|+..
T Consensus 209 ~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 209 ACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred CCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 22111111 22333334579999999875 8999999999999753
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=207.85 Aligned_cols=238 Identities=15% Similarity=0.217 Sum_probs=164.8
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
++.+||||||.|||| | +|+|+||+|+ |||+|+++++.++|+++|+|+|+ .+.+.+++. . |+
T Consensus 18 ~~~aIIlA~G~stRl-p-----~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~-~-------~g-- 78 (264)
T 3k8d_A 18 SFVVIIPARYASTRL-P-----GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVE-A-------AG-- 78 (264)
T ss_dssp CCEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-H-------TT--
T ss_pred ceEEEEEcCCCCCCC-C-----CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHH-H-------cC--
Confidence 478999999999999 2 5999999999 99999999999999999999995 466665553 2 33
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~-~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
++++...+ .|+.||+. +.++...+. ....+.++++.||. +. ...+.++++.|.+.++++++++.++
T Consensus 79 -~~v~~~~~-------~~~~Gt~~-i~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v 146 (264)
T 3k8d_A 79 -GEVCMTRA-------DHQSGTER-LAEVVEKCA---FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 146 (264)
T ss_dssp -CEEEECCT-------TCCSHHHH-HHHHHHHHT---CCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEEC
T ss_pred -CEEEEecC-------CCCCCHHH-HHHHHHHhc---cCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEc
Confidence 33332212 23468876 777776663 11358999999998 33 4678999999988888999999988
Q ss_pred CCCC-CCcce--EEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 252 GESR-ASDYG--LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 252 ~~~~-a~~~g--~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.++. ..+.+ .|.+|++|+++.|.+||..........+ +.....+++.++|+|+|++++|..+... .+.
T Consensus 147 ~d~~~~~~p~~vkVv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~y~~~~l~~~~~~-~~~ 217 (264)
T 3k8d_A 147 HNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEG--------LETVGDNFLRHLGIYGYRAGFIRRYVNW-QPS 217 (264)
T ss_dssp CSHHHHTCTTSCEEEECTTSBEEEEESSCCSCCHHHHHHC--------SSCCCSCCEEECSEEEEEHHHHHHHHHS-CCC
T ss_pred CCHHHccCCCceEEEECCCCeEEEEecCCCCCCCcccccc--------ccccCCcceEEEEEEEECHHHHHHHHhC-CCC
Confidence 6521 11112 3568999999999999863211000000 0000125789999999999999877653 222
Q ss_pred CCchhh--hhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHh
Q 009817 329 SNDFGS--EIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 329 ~~d~~~--dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l 371 (524)
..+... +.+..+-...+|.++...+ +|.+||||+||..|+..+
T Consensus 218 ~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 218 PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 111100 2233333457899986654 589999999999998754
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=195.01 Aligned_cols=225 Identities=16% Similarity=0.190 Sum_probs=153.2
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
++.|||||||.||||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++. . +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~-----~---~--- 60 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVE-----D---L--- 60 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHT-----T---T---
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHH-----h---c---
Confidence 3789999999999996 8999999999 9999999999999 9999999986 55655542 1 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.++...+. +..|+++++ .++..+ ..+.+++++||+ +++ .++.++++.|.+.++.+++.....
T Consensus 61 -~~~~~~~~~-------~~~g~~~~~-~~~~~~------~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 125 (234)
T 2y6p_A 61 -CEVFLTPSD-------LPSGSDRVL-YVVRDL------DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDK 125 (234)
T ss_dssp -SEEEECCTT-------CCSHHHHHH-HHHTTC------CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECS
T ss_pred -eEEEECCcc-------cccchHHHH-HHHHhC------CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCH
Confidence 122221111 124788866 333222 347899999999 777 679999999988774344444311
Q ss_pred CC-CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 252 GE-SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 252 ~~-~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
.. ..+..++ +..|++|+|..|.|||....... . ..+.+.++|+|+|+++.|..+.+.. +...
T Consensus 126 ~~~~~~~~~~-~~~~~~g~v~~~~e~~~~~~~~~--~-------------~~~~~~~~giy~~~~~~l~~~~~~~-~~~~ 188 (234)
T 2y6p_A 126 EAYERPEDVK-VVLDREGYALYFSRSPIPYFRKN--D-------------TFYPLKHVGIYGFRKETLMEFGAMP-PSKL 188 (234)
T ss_dssp GGGGCTTSCE-EEECTTSBEEEEESSCCSCCSSC--C-------------SSCCEEEEEEEEEEHHHHHHHHHSC-CCHH
T ss_pred HHhcCCCceE-EEEcCCCCEeeeecCCCCccccc--c-------------cceeeEEEEEEEcCHHHHHHHHhCC-CCcc
Confidence 10 1122344 34578899999999875311000 0 0135679999999999987765421 1110
Q ss_pred chhhh--hHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHh
Q 009817 331 DFGSE--IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 331 d~~~d--ii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l 371 (524)
+.... .+..+.++.++.+|.++++|.||||++||..|+..+
T Consensus 189 ~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 189 EQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 11111 233233467999999999999999999999998765
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=197.94 Aligned_cols=229 Identities=16% Similarity=0.234 Sum_probs=158.3
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCC-CeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGI-NKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi-~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
++.+||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~-~-------~~- 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQ-A-------FG- 63 (245)
T ss_dssp CEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH-H-------TT-
T ss_pred CeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHH-H-------cC-
Confidence 378999999999999 5 9999999999 999999999999996 999999986 56655553 1 22
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--ccCHHHHHHHHHHc-CCcEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDR-DADITISCA 249 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~-~ad~tl~~~ 249 (524)
++++...+. +..||++++. +...+ ..+.+++++||+.+ ...+.++++.|.+. ++++++++.
T Consensus 64 --~~~~~~~~~-------~~~g~~~~~~-~~~~~------~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (245)
T 1h7e_A 64 --GKAIMTRND-------HESGTDRLVE-VMHKV------EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH 127 (245)
T ss_dssp --CEEEECCSC-------CSSHHHHHHH-HHHHS------CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred --CeEEeCCCc-------cCCcHHHHHH-HHHhC------CCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEee
Confidence 344432211 2357876554 33333 24789999999943 45689999999887 788888777
Q ss_pred EcCCCC--CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC
Q 009817 250 AVGESR--ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (524)
Q Consensus 250 ~~~~~~--a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~ 327 (524)
+.+... ...+..+..+++|++..|.+++....... ...+.+.++|+|+|+++.|..++ . .+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~---------------~~~~~~~~~g~y~~~~~~l~~~~-~-~~ 190 (245)
T 1h7e_A 128 AISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYS-Q-LP 190 (245)
T ss_dssp EECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGG-G-SC
T ss_pred cCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCccc---------------ccCceeEEEEEEEcCHHHHHHHH-h-CC
Confidence 762111 01122233367899999998754311000 00135679999999999887654 2 12
Q ss_pred CCCchhhhhHHhhh--h-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 328 TSNDFGSEIIPAAI--M-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 328 ~~~d~~~dii~~li--~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
....+..+.++.+. + ..++.++..+++|.||||++||..|+..+..
T Consensus 191 ~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~ 239 (245)
T 1h7e_A 191 ESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 11112334444332 3 5789999999999999999999999877653
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-23 Score=199.16 Aligned_cols=214 Identities=16% Similarity=0.221 Sum_probs=137.1
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|++|.+||||||.||||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ +..+++.+++.+. ++
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~-------~~ 81 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKD-------KG 81 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTT-------SC
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHh-------cC
Confidence 77899999999999999986 9999999999 9999999999999 99999999 7777777765422 22
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCH-HHHHHHHHHcCCcEEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl-~~ll~~h~~~~ad~tl~~~~ 250 (524)
..+.++.... |..|++++++.++..++ +++++++||+.++.++ ..+++. . . +++...
T Consensus 82 -~~~~~v~~~~--------~~~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~~~~l~~~----~-~-~~~~~~ 139 (232)
T 2xme_A 82 -FNYKIVRHDR--------PEKGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQFIEKAVRG----E-G-VIADRE 139 (232)
T ss_dssp -CCEEEEECSC--------GGGCHHHHHHTTGGGCC-------SSEEEEETTEEECHHHHHHHTTC----C-E-EEEESS
T ss_pred -CcEEEEECCC--------CCCCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHHHHHHHhC----C-C-cEEEcc
Confidence 1255554221 22599999998876553 6899999999875443 444432 1 1 222211
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
.......+++.+..+ +|+|..|.+++.. .+..++|+|+|++++|.. ++.......
T Consensus 140 ~~~~~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~~-l~~~~~~g~ 194 (232)
T 2xme_A 140 PRFVDIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFEH-AEKLRDREE 194 (232)
T ss_dssp CSSSCTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHHH-HGGGTTSSC
T ss_pred ccccCCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHHH-HHHHHhcCh
Confidence 111123457777776 6899999887642 246789999999998874 444322221
Q ss_pred chhhhhHHhhhhcCceEEEEec-CeEeecCCHHHHHHHHHH
Q 009817 331 DFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMA 370 (524)
Q Consensus 331 d~~~dii~~li~~~~V~~y~~~-~~w~dIgt~~d~~~An~~ 370 (524)
.. +..+++++++..+.++ ++|.||+||+||..|+..
T Consensus 195 ~~----l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 195 IP----LSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp CC----HHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred hH----HHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 11 3344445567777776 689999999999988764
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-21 Score=189.10 Aligned_cols=238 Identities=14% Similarity=0.217 Sum_probs=161.7
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+|.+||||||.||||. +|+|+|++|+ |||+|+++++.++|+++|+|++++ +.+.+++. . ++
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~-~-------~~-- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAK-S-------FG-- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHH-H-------TT--
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHH-h-------cC--
Confidence 3689999999999994 3999999999 999999999999999999999975 45655553 1 22
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-c-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~-~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.++...+ .+..|++ .+..+...+.. ...+.+++++||.. . ..++.++++.|.+.++++++++.+.
T Consensus 63 -~~~~~~~~-------~~~~g~~-~~~~~~~~l~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 63 -AEVCMTSV-------NHNSGTE-RLAEVVEKLAI---PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp -CEEEECCC-------SSCCHHH-HHHHHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred -CEEEECCc-------cccCChH-HHHHHHHHhcc---CCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 33332211 1234776 45555554431 13478999999983 3 4678999999988888888888887
Q ss_pred CCCC---CCcceEEEECCCCcEEEEEecCCccccccc-------ccccccccCCccccccCCcceeeeEEEEeHHHHHHH
Q 009817 252 GESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAM-------QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (524)
Q Consensus 252 ~~~~---a~~~g~v~id~~g~V~~~~EKp~~~~~~~~-------~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~l 321 (524)
.++. ...+..+..|++|++..|.+++........ ..+ .| ..+..++|+|+|++++|..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~------~p-----~~~~~~~giy~~~~~~l~~~ 199 (262)
T 1vic_A 131 HDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQ------LS-----DAYLRHIGIYAYRAGFIKQY 199 (262)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCC------CC-----TTCEEEEEEEEEEHHHHHHH
T ss_pred CCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCccccccccccccc------cc-----cceEEEEEEEEeeHHHHHHH
Confidence 6520 123555556888999999987632110000 000 01 12678999999999988765
Q ss_pred HHhhCCCCCchhhhhHH--hhh-hcCceEEEEec-CeEeecCCHHHHHHHHHHhhccC
Q 009817 322 LRWRYPTSNDFGSEIIP--AAI-MEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 322 l~~~~~~~~d~~~dii~--~li-~~~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
... .+...+.. +++. .++ ...++.++..+ ++|.|||||+||..|+..+....
T Consensus 200 ~~~-~~~~~~~~-e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~~ 255 (262)
T 1vic_A 200 VQW-APTQLENL-EKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANG 255 (262)
T ss_dssp HHS-CCCHHHHH-HTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTC
T ss_pred HhC-CCCchhhh-hhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 432 11111111 1111 234 35689999998 79999999999999998887543
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=184.21 Aligned_cols=237 Identities=14% Similarity=0.156 Sum_probs=160.0
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHH-HHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPM-SNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l-~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+.+||||+|.||||. +|+|+||+|+ |||+|++ +.+.++++++|+|+|+. +.+.+++. .++
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~--------~~g-- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATDD--ERIAEICR--------AEG-- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH--------TTT--
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHH--------HcC--
Confidence 468999999999995 4999999999 9999999 99999999999999964 56655543 233
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHc-CCcEEEEEEE
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDR-DADITISCAA 250 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~ad~tl~~~~ 250 (524)
++++...+. +..|| +++..++..+.. ...+.++++.||. +.. ..+.++++.|.+. ++++..++.+
T Consensus 63 -~~v~~~~~~-------~~~Gt-~~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~ 130 (253)
T 4fcu_A 63 -VDVVLTSAD-------HPSGT-DRLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEP 130 (253)
T ss_dssp -CCEEECCTT-------CCCHH-HHHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEE
T ss_pred -CeEEEeCCC-------CCChH-HHHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEE
Confidence 223221111 12477 478888776641 1347899999999 444 5689999999876 3444444444
Q ss_pred cCC----CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhC
Q 009817 251 VGE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 251 ~~~----~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~ 326 (524)
..+ ..+..+ .|..|++|+++.|.++|-.........+ +......++.+.|+|+|++++|..+...
T Consensus 131 ~~~~~~~~~p~~~-kvv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~f~~~~l~~~~~~-- 199 (253)
T 4fcu_A 131 IHALDEFQRDSIV-KVVMSKQNEALYFSRATIPYDRDGAKRD--------EPTLHTQAFRHLGLYAYRVSLLQEYVTW-- 199 (253)
T ss_dssp CCCHHHHHCTTSC-EEEECTTSBEEEEESSCCSCCTTTSSSS--------SCCCCSCCEEEEEEEEEEHHHHHHHTTS--
T ss_pred cCCHHHccCCCcc-EEEECCCCeEEEecCCCCCCCCCccccc--------ccccccceeEEEEEEEeCHHHHHHHHhC--
Confidence 321 112333 4678899999999998853321100000 0000124688999999999999876532
Q ss_pred CCCCchh-hhh---HHhhhhcCceEEEEecCe-EeecCCHHHHHHHHHHhhcc
Q 009817 327 PTSNDFG-SEI---IPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 327 ~~~~d~~-~di---i~~li~~~~V~~y~~~~~-w~dIgt~~d~~~An~~l~~~ 374 (524)
+ ...+. .|. +..+-..++|.++..+++ |.+||||+||..|+..+.++
T Consensus 200 ~-~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 200 E-MGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp C-CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred C-CCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 1 11221 222 332234579999999999 99999999999999776543
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=182.67 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=155.4
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
|+.+.+||||||.||||++ ..+||+|+|++|+ |||+|+++++.+++ +++|+|++++......+++.+.|...
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~---- 73 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISD---- 73 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCC----
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCC----
Confidence 4567899999999999987 4689999999999 99999999999997 99999999987654333333444211
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhc-CCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN-RNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITIS 247 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~-~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~ 247 (524)
..+.++... .+..++++.++..+.+... ...+.+|++.||. +....+.++++.|.+.++. +.
T Consensus 74 --~~~~~~~~~-----------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~--i~ 138 (246)
T 3f1c_A 74 --DRIVVIEGG-----------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV--DT 138 (246)
T ss_dssp --TTEEEEECC-----------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--EE
T ss_pred --CCEEEECCC-----------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--EE
Confidence 124544321 2678899999988863100 1247899999998 3345689999999887653 44
Q ss_pred EEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC
Q 009817 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (524)
Q Consensus 248 ~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~ 327 (524)
+.++.+ .++..++++.|..+.+|+.. +..-..++|+.+.|.+.++....
T Consensus 139 ~~~~~d------~i~~~~~~~~v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~~~ 187 (246)
T 3f1c_A 139 VIEALD------TIVESSNHEVITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNLTP 187 (246)
T ss_dssp EEECSS------CEEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTSCH
T ss_pred EEeccc------eEEEecCCCeEEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHHHH
Confidence 455443 34455555666665555432 11224579999988877764311
Q ss_pred CCCchhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccC
Q 009817 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (524)
Q Consensus 328 ~~~d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~ 375 (524)
....+..|.+..+... .+|..+..+.+|.+|+|++||..|+..+..+.
T Consensus 188 ~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 188 EKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp HHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred cCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 1122345555544443 68999999999999999999999998887653
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=178.82 Aligned_cols=223 Identities=12% Similarity=0.058 Sum_probs=140.5
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHHhhhcCCcccCC
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~~~ 172 (524)
|.+||||||.||||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+.+++ +.| + ..+.
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~-~~~-~--~~~~- 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLV-DKY-L--PLYK- 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHH-HHH-C--GGGG-
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHH-Hhc-c--cccc-
Confidence 7899999999999998 6789999999999 9999999999998 5999999999877 4454444 333 1 0111
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcC--CCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR--NIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~--~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~ 248 (524)
..+..... . .|++++++.++..+.+. .. ..+.+++++||+ +.. .++.++++.|.+.++ .+++
T Consensus 75 ~~~~~~~~--~---------~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~ 140 (236)
T 2vsh_A 75 ERIIITKG--G---------ADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTV 140 (236)
T ss_dssp GGEEEEEC--C---------SSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEE
T ss_pred CceEEECC--C---------CchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEE
Confidence 01222211 0 37889999998877421 01 236789999999 544 578999999987654 3445
Q ss_pred EEcCCCCCCcceEEEECCCC-cEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC
Q 009817 249 AAVGESRASDYGLVKIDNMG-RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g-~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~ 327 (524)
.+..++ +..+++| ++..+.+++.. +.....|+|+++.|..+++....
T Consensus 141 ~~~~~~-------~~~~~~g~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~~ 188 (236)
T 2vsh_A 141 VEAVDT-------IVESTNGQFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLSD 188 (236)
T ss_dssp EECCSC-------EEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCCH
T ss_pred Eecccc-------EEEeCCCCeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHHh
Confidence 555431 2334567 77766665321 11123789999988776653211
Q ss_pred CCCch-hhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 328 TSNDF-GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 328 ~~~d~-~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
. ..+ ..+.+..+.. ..++..+..+++|.||+|++||..|+..+.
T Consensus 189 ~-g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 189 E-EKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp H-HHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred c-CCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 1 011 1222333333 357899988889999999999999987654
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=169.23 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=134.7
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
+|.+||||||.||||++ ..||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +. .+ + .
T Consensus 6 ~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~-~~-~----~-- 72 (231)
T 1vgw_A 6 KNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQ-TA-F----P-- 72 (231)
T ss_dssp CEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HH-HH-C----T--
T ss_pred ceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HH-hc-C----C--
Confidence 47899999999999986 579999999999 99999999999985 99999999988766654 43 22 1 1
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhc-CCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN-RNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~-~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
..+.++. .. .|++++++.++..+.+... ...+.+++++||. +.. ..+.++++.|.+.+. ..+++.
T Consensus 73 ~~i~~~~--~~---------~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~-~~~~~~ 140 (231)
T 1vgw_A 73 QVRVWKN--GG---------QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAE-GGILAV 140 (231)
T ss_dssp TSEEECC--CC---------SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTT-CEEEEE
T ss_pred CceEEEc--CC---------CcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCC-eEEEEe
Confidence 1244432 11 3899999999887742000 0247899999998 334 458999998866542 234445
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
+..+. +..+++|++....++ . ..+.....|+|+.+.|..+++......
T Consensus 141 ~~~~~-------~~~~~~g~i~~~~~~---~----------------------~~~~~~~p~~f~~~~l~~~~~~~~~~g 188 (231)
T 1vgw_A 141 PVADT-------LKRAESGQISATVDR---S----------------------GLWQAQTPQLFQAGLLHRALAAENLGG 188 (231)
T ss_dssp ECCSC-------EEEESSSBEEEEECC---T----------------------TEEEEEEEEEEEHHHHHHHHHC----C
T ss_pred ecccc-------eEEeCCCceEecCCh---H----------------------HheeeeCCcEecHHHHHHHHHHHhhcC
Confidence 54331 111245655433221 1 012223489999998877665432211
Q ss_pred CchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHh
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l 371 (524)
......++... ..++..+..++.|.||+|++||..|+..+
T Consensus 189 ~~~~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 189 ITDEASAVEKL--GVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp CCSHHHHHHTT--TCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred CCcHHHHHHHc--CCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 01111222221 35788888778899999999999998754
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=170.89 Aligned_cols=215 Identities=15% Similarity=0.079 Sum_probs=148.9
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
+|.+||||||.||||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++...+. + +.++. ..
T Consensus 2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~---~-~~~~~---~~-- 68 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDE---S-KLVFG---GE-- 68 (223)
T ss_dssp CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHH---H-HHHTC---BT--
T ss_pred ceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHH---H-HHHhc---cC--
Confidence 3789999999999998 3589999999999 99999999999988 999999999865332 1 12221 11
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
.+.++.. . .+++++++.++..++ ..+.++++.||+ +.. .++.++++.|. .+.+.++.+.+
T Consensus 69 -~v~~~~~--~---------~~~~~~i~~al~~~~-----~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~ 130 (223)
T 2xwl_A 69 -DSVIVSG--G---------VDRTESVALALEAAG-----DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLA 130 (223)
T ss_dssp -TEEEEEC--C---------SSHHHHHHHHHTTCT-----TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEEC
T ss_pred -CeEEEcC--C---------CCHHHHHHHHHHhcC-----CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEe
Confidence 2554432 1 267888988876652 246789999998 444 46899999883 34466776666
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
..+ +..+ .|++|++..+.|++.. +.....|+|+++.+..+++... .
T Consensus 131 ~~d--~~~~----~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~---~ 176 (223)
T 2xwl_A 131 PAD--TIKA----VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT---A 176 (223)
T ss_dssp CSS--CEEE----ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC---S
T ss_pred ccc--ceEE----EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh---C
Confidence 554 2222 3778898888776431 1123458899988776654321 2
Q ss_pred chhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 331 DFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 331 d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
++..+....+.. ..++..+..+++|.|||||+||..|+..+..
T Consensus 177 ~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 177 GGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp CCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 223333333222 3578888888899999999999999877654
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=170.40 Aligned_cols=217 Identities=15% Similarity=0.120 Sum_probs=146.3
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
++.+||||||.||||+ ||+|+|++|+ |||+|+++.+.+++ +++|+|+++. +.+.+++. . ++
T Consensus 4 ~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~-~-------~~- 65 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAK-N-------FG- 65 (228)
T ss_dssp EEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHH-H-------TT-
T ss_pred ceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHH-H-------cC-
Confidence 3679999999999997 8999999999 99999999999998 7999999964 44544442 2 22
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--ccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
+.++....... .+..|++++|+.++..+. ...+.++++.||..+ ..++.++++.|.+.++++++.+.+
T Consensus 66 --~~~~~~~~~~~----~~~~g~~~sv~~~l~~~~----~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 135 (228)
T 1ezi_A 66 --VEVVLRPAELA----SDTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACP 135 (228)
T ss_dssp --CEEEECCC----------CHHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEE
T ss_pred --CEEEeCchHHc----CCCCChHHHHHHHHHHhC----CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 22222111000 012488999999988874 134789999999843 356899999887777788888877
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCC-cccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPS-GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~-~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
..+. + ++...+|++|++..|.+... .+... .. ...+..++|+|+|++..|...++
T Consensus 136 ~~~~-p--~~~~~~~~~g~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~giy~~~~~~l~~~~~------ 191 (228)
T 1ezi_A 136 MEHH-P--LKTLLQINNGEYAPMRHLSDLEQPRQ--------------QL-PQAFRPNGAIYINDTASLIANNC------ 191 (228)
T ss_dssp CSSC-T--TSCEEECC--CEEESSCHHHHTCCGG--------------GS-CCEEEEEEEEEEEEHHHHHHHTS------
T ss_pred cCCC-c--ceeeEEcCCCcEeeccccccccCCcc--------------cC-chhheeeeEEEEEeHHHHhhCCc------
Confidence 7652 2 23233477888888866210 00000 00 01245678999999987754210
Q ss_pred CchhhhhHHhhhhcCceEEEEec-CeEeecCCHHHHHHHHHHhhc
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~-~~w~dIgt~~d~~~An~~l~~ 373 (524)
+ ...++..+..+ .+|.||+|++||..|+..+..
T Consensus 192 ------~-----~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~ 225 (228)
T 1ezi_A 192 ------F-----FIAPTKLYIMSHQDSIDIDTELDLQQAENILNH 225 (228)
T ss_dssp ------S-----CCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC-
T ss_pred ------c-----cCCceEEEEeCcccccCCCCHHHHHHHHHHHHh
Confidence 0 14567788876 579999999999999876643
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=173.43 Aligned_cols=221 Identities=13% Similarity=0.086 Sum_probs=139.5
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
|++|.+||||||.|+||+ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++..+++.+++.. .+
T Consensus 2 ~~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~-------~~ 70 (228)
T 2yc3_A 2 EKSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE-------SI 70 (228)
T ss_dssp TTCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT-------TS
T ss_pred CcceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH-------hC
Confidence 456899999999999997 3579999999999 9999999999998 8999999999877665444321 22
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~ 248 (524)
+ ..+.++... +|..++++.++..+.+ ..+.++++.||. +.. ..+.++++.|.+.++ ++++
T Consensus 71 ~-~~v~~~~~~-----------~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~ 132 (228)
T 2yc3_A 71 D-VDLSFAIPG-----------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLG 132 (228)
T ss_dssp S-SEEEEECCC-----------SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred C-CcEEEECCC-----------CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEE
Confidence 2 124444311 3788999998876641 236788999997 444 568999998877653 4545
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.+..+. +..+|+++.+..+.+++. .+.....|+|+.+.|...++.....
T Consensus 133 ~~~~~~------~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~ 181 (228)
T 2yc3_A 133 VPAKAT------IKEVNSDSLVVKTLDRKT-------------------------LWEMQTPQVIKPELLKKGFELVKSE 181 (228)
T ss_dssp EECCSC------CCCBCTTSCBCCCCSCCC-------------------------CEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred Eeccce------EEEEcCCCceEEecCccc-------------------------eEEEeCCcEEEHHHHHHHHHHHHhc
Confidence 554331 112344455543221111 1122348999988776655431111
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
. .+..+.+..+.+ ..++..+..+..|.||+||+||..|+..+..
T Consensus 182 ~-~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 226 (228)
T 2yc3_A 182 G-LEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE 226 (228)
T ss_dssp T-CCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred C-CCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhh
Confidence 1 122334433333 3567655555679999999999999876643
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-20 Score=179.76 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=140.2
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+|.+||||||. |||.+.+...||+|+|++|+ |||+|+++++.++++ +|+|++.. +++ +.++ +
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~~--~~i-----~~~~------~-- 63 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGEN--PGL-----VPAP------A-- 63 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESCC--SSC-----SSCC------S--
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeCh--HHH-----hhhc------C--
Confidence 37899999999 88877766689999999999 999999999999998 88887553 333 1221 1
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce--ecccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~--l~~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.+ .. ..|++++|+.++..+. +.|++++||+ +....+.++++ | +.++++++.+.+.
T Consensus 64 -~~~---~~---------~~g~~~~i~~a~~~~~-------~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~ 121 (232)
T 2dpw_A 64 -LTL---PD---------RGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPK 121 (232)
T ss_dssp -EEE---CC---------CSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEH
T ss_pred -eEe---cC---------CCCHHHHHHHHHHHcC-------CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeec
Confidence 444 11 2599999999876552 7899999999 44566899998 7 5667788777764
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhh-----C
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR-----Y 326 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~-----~ 326 (524)
++.+ ..|+.+ .++|..+.||| .+++|+|+|++++|..+.+.. .
T Consensus 122 ~~~~-~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~~ 169 (232)
T 2dpw_A 122 EAVE-ARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVAL 169 (232)
T ss_dssp HHHH-HHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHHT
T ss_pred cchh-hhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHHh
Confidence 3210 123321 23566666553 258999999999876543311 1
Q ss_pred C-------------------CCCchhhhhHHhhhhc--CceEEEEec--CeEeecCCHHHHH
Q 009817 327 P-------------------TSNDFGSEIIPAAIME--HDVQAYIFR--DYWEDIGTIKSFY 365 (524)
Q Consensus 327 ~-------------------~~~d~~~dii~~li~~--~~V~~y~~~--~~w~dIgt~~d~~ 365 (524)
+ ....+..+++..++.. .++..+.++ +.|.|||||+||.
T Consensus 170 ~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 170 RKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp TTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred ccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 1 0223345666665543 688888884 5799999999984
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=178.64 Aligned_cols=340 Identities=14% Similarity=0.148 Sum_probs=201.7
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeec-CcchhHHHHHHHHHhc----CCC-eEEEEec-cCchhHHHHHHHhhh
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQ-FNSASLNRHIARTYF 164 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~s----Gi~-~I~Ivt~-~~~~~l~~hl~~~y~ 164 (524)
..++.+||||||.||||+ ...||+|+||+ |+ ||++++++.+... |.. .++|+++ +..+.+.+++.+ +
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~-~- 163 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKK-Y- 163 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGG-G-
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHh-c-
Confidence 567889999999999997 56899999999 99 9999999999877 533 4667777 777888777742 2
Q ss_pred cCCcccCCCeEEEEccccC---------------CC--CCCCCcccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCcee
Q 009817 165 GNGTNFGDGFVEVLAATQT---------------PG--ESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHL 225 (524)
Q Consensus 165 ~~~~~~~~~~V~vl~~~q~---------------~~--e~~~~~~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l 225 (524)
..|+. .|.++. |. .. ......+.|||+++..+. ..++.......++++|++||.|
T Consensus 164 ---~~fg~-~i~~f~--Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL 237 (488)
T 2i5k_A 164 ---SANRI-RIRSFN--QSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNL 237 (488)
T ss_dssp ---CSSSC-EEEEEC--CCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBS
T ss_pred ---cccCc-eEEEEE--eCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcC
Confidence 23332 233221 21 00 001113469999998431 1122221235689999999998
Q ss_pred cc-cCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECCCCcEEEEEe---cCCcccccccccccccccCCcccccc
Q 009817 226 YR-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE---KPSGANLKAMQVDTSLLGFSPQEARK 301 (524)
Q Consensus 226 ~~-~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~~g~V~~~~E---Kp~~~~~~~~~v~t~~~~l~~~~~~~ 301 (524)
.. .|+. ++..|.++++++++.+.+..++. ..||.+..+ +|+ ..+.| .|...... .+ . ..
T Consensus 238 ~~~~d~~-~L~~~~~~~a~~t~~v~~~~~p~-~~yG~Iv~~-dG~-~~iVE~~e~~~e~~~~---~~---------~-~~ 300 (488)
T 2i5k_A 238 GATVDLK-ILNHMIETGAEYIMELTDKTRAD-VKGGTLISY-DGQ-VRLLEVAQVPKEHIDE---FK---------N-IR 300 (488)
T ss_dssp SCCCCHH-HHHHHHHSCCSEEEEEEECCGGG-SSSCEEEEE-TTE-EEEECGGGSCTTSHHH---HT---------C-TT
T ss_pred CCcccHH-HHHHHHhcCCcEEEEEEEecCCC-CceeEEEEE-CCc-EEEEEeccCCHHHHhh---cc---------c-cc
Confidence 86 4775 66899999999999988775521 349987664 565 34444 33321100 00 0 00
Q ss_pred CCcceeeeEEEEeHHHHHHHHHhhCCCC---------------------CchhhhhHHhhhhcCceEEEEec-CeEeecC
Q 009817 302 CPYVASMGVYVFKKDVLFKLLRWRYPTS---------------------NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIG 359 (524)
Q Consensus 302 ~~~l~~~GIYvf~~~vL~~ll~~~~~~~---------------------~d~~~dii~~li~~~~V~~y~~~-~~w~dIg 359 (524)
.....++|+|+|+.+.|.++++...... +-++.|+++.+ .+..++.++ ..+.-+-
T Consensus 301 ~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~---~~~~~~~V~R~~F~PvK 377 (488)
T 2i5k_A 301 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF---DGAHGVVVPRSRFLPVK 377 (488)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGS---SSCEEEEECGGGCCBCC
T ss_pred ccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhc---cCceEEEeccccccccc
Confidence 1245699999999999998887522100 11333434322 234445553 2366677
Q ss_pred CHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEcC--eeeec--eEECCCCEECceEEeceEEcCCcEECCCC
Q 009817 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISHGCFLRECTVEHSIVGERSRLDYGV 435 (524)
Q Consensus 360 t~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~--~~i~~--siIg~g~~I~~~~i~~siIg~~~~Ig~~~ 435 (524)
+..+++.+...+-.......+.++.. + .+.|-+.+++ .++.+ ..+.....|-++ .+-.|--+++.|.++
T Consensus 378 n~~~ll~~~~~~~~~~~g~~~~~~~~-~----e~~P~v~~~~~~~~~~~~~~rf~~~p~i~~~--~~l~v~Gdv~fg~~v 450 (488)
T 2i5k_A 378 TCSDLLLVKSDLFRLEHGSLKLDPSR-F----GPNPLIKLGSHFKKVSGFNARIPHIPKIVEL--DHLTITGNVFLGKDV 450 (488)
T ss_dssp SHHHHHHHTSTTEEEETTEEEECTTC-C----SSCCEEEECGGGSSHHHHHHHCSSCCBCTTE--EEEEEESSEEECTTC
T ss_pred CCccHHHHHHHHHHHhcCcEeecCCc-C----CCCCeEEECCcccchhhHHhhcCCCcccccc--ceEEEEeeeEEcCCc
Confidence 77766555544322111111112211 1 1223233332 12211 112221222222 234566669999999
Q ss_pred EEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEE
Q 009817 436 ELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (524)
Q Consensus 436 ~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~I 484 (524)
.++++++..+. ...|+.|.+|++++|++|.-|.+|
T Consensus 451 ~l~G~v~i~a~--------------~~~~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 451 TLRGTVIIVCS--------------DGHKIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp EEEEEEEEECC--------------TTCCEEECTTCEEEEEEEEEEEEE
T ss_pred EEEEEEEEEcC--------------CCCeEEeCCCCEEecceeeccccc
Confidence 99999887652 234589999999999998877776
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-19 Score=189.98 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=61.7
Q ss_pred eEEEEcCceeccc--CHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECC--CCcEEEEEecCCccccccccccccc
Q 009817 216 NVAILCGDHLYRM--DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN--MGRIAQFAEKPSGANLKAMQVDTSL 291 (524)
Q Consensus 216 ~~Lvl~gD~l~~~--dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~--~g~V~~~~EKp~~~~~~~~~v~t~~ 291 (524)
.=|+--+||+|+| +|.+++++|. .++.. .++++.||+..+|+ +++| .|.|||+....
T Consensus 12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~--------- 72 (374)
T 2iu8_A 12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH--------- 72 (374)
T ss_dssp ---------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH---------
T ss_pred cCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh---------
Confidence 4467789999998 8999999984 35543 33456799988884 4567 99999985421
Q ss_pred ccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchhhhhHHhhhhcCceEEEEecCeEee
Q 009817 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWED 357 (524)
Q Consensus 292 ~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~~dii~~li~~~~V~~y~~~~~w~d 357 (524)
..+.++|+|+|++++|..+. +| .+++| ++.+...++|.+..+|+|
T Consensus 73 -----------~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~~~~a~~~~~~~~~ 117 (374)
T 2iu8_A 73 -----------LKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSESPSLVFQKCLELFI 117 (374)
T ss_dssp -----------HHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSCHHHHHHHHHTTTS
T ss_pred -----------hhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCCHHHHHHHHHHHhc
Confidence 14679999999998774211 12 35566 555544444444445554
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-17 Score=157.01 Aligned_cols=219 Identities=11% Similarity=0.105 Sum_probs=141.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
|.+|.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ + .. +
T Consensus 5 ~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~-~~-------~ 71 (236)
T 1i52_A 5 HLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-L-PL-------A 71 (236)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-S-GG-------G
T ss_pred CCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-H-Hh-------c
Confidence 345899999999999997 3579999999999 99999999999987 89999999987655533 2 11 2
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cc-cCHHHHHHHHHHcCCcEEEEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~-~dl~~ll~~h~~~~ad~tl~~ 248 (524)
+...+.++... .|..++++.++..+. ..+.+++++||+. .. ..+..+++.+.+.++. .+++
T Consensus 72 ~~~~v~~~~~~-----------~g~~~~i~~al~~~~-----~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~-~~~~ 134 (236)
T 1i52_A 72 NHPQITVVDGG-----------DERADSVLAGLKAAG-----DAQWVLVHDAARPCLHQDDLARLLALSETSRTG-GILA 134 (236)
T ss_dssp GCTTEEEEECC-----------SSHHHHHHHHHHTST-----TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSC-EEEE
T ss_pred CCCCEEEECCC-----------CCHHHHHHHHHHhcC-----CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCe-EEEE
Confidence 11125544321 278899998876653 2478999999984 34 3578888877655423 2434
Q ss_pred EEcCCCCCCcceEEEECCC-CcEEEEEecCCcccccccccccccccCCccccccCCccee-eeEEEEeHHHHHHHHHhhC
Q 009817 249 AAVGESRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MGVYVFKKDVLFKLLRWRY 326 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~-~GIYvf~~~vL~~ll~~~~ 326 (524)
.+..+. + ..++++ |++....+. ..+.. -+.++|+.+.|..+++...
T Consensus 135 ~~~~~~----~--~~~~~~~~~i~~~~~~--------------------------~~i~~~~~p~~f~~~~l~~~~~~~~ 182 (236)
T 1i52_A 135 APVRDT----M--KRAEPGKNAIAHTVDR--------------------------NGLWHALTPQFFPRELLHDCLTRAL 182 (236)
T ss_dssp EECCSC----E--EEECTTSSSEEEEECC--------------------------TTCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred Eecccc----E--EEEcCCCCceeeccCh--------------------------HhheeeeCCceecHHHHHHHHHHHH
Confidence 444321 1 112444 455432110 01222 2567888887766665422
Q ss_pred CCCCchh--hhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhcc
Q 009817 327 PTSNDFG--SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 327 ~~~~d~~--~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~ 374 (524)
.....+. ..++... ..++..+..++.|.||+||+||..|+..+..+
T Consensus 183 ~~g~~~td~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 183 NEGATITDEASALEYC--GFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp HTTCCCCSHHHHHHHT--TCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred hcCCCcccHHHHHHHc--CCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 1111111 1222221 35788888888899999999999998877544
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-17 Score=152.57 Aligned_cols=187 Identities=14% Similarity=0.173 Sum_probs=129.1
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+|.+||||||.|+||. .||+|+|++|+ |||+|+++.+.++++++|+|++++..+++.+++ .. ++
T Consensus 5 ~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~-----~~---~~-- 68 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKV-----EL---DG-- 68 (199)
T ss_dssp CEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHS-----CC---TT--
T ss_pred ceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHh-----cc---CC--
Confidence 4789999999999996 69999999999 999999999999999999999998766554433 21 22
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--ccCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~--~~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.++.... +..|++++++.++..+. ...+.++++.||+.+ ...+.++++. +.++++++...
T Consensus 69 -~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~-- 131 (199)
T 2waw_A 69 -LDIVLVDD--------AGLGCSSSLKSALTWVD----PTAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY-- 131 (199)
T ss_dssp -SEEEECCC--------CCTTCCCHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE--
T ss_pred -CEEEECCC--------cccCHHHHHHHHHHhhh----ccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec--
Confidence 34443211 23589999999987763 124789999999955 4567888887 44555443221
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d 331 (524)
+|+ +. .-++|+++.|..+.+. .. +
T Consensus 132 ---------------~g~-------~~------------------------------~P~~~~~~~l~~~~~~--~~--~ 155 (199)
T 2waw_A 132 ---------------ANG-------IG------------------------------HPFWVSRGVFGDLAEL--HG--D 155 (199)
T ss_dssp ---------------TTE-------EE------------------------------EEEEEEGGGHHHHHTC--SS--T
T ss_pred ---------------CCc-------cc------------------------------CCEEEcHHHHHHHHhc--CC--C
Confidence 011 00 0147888887765431 11 1
Q ss_pred hhhhhHHhhhhc--CceEEEEe-cCeEeecCCHHHHHHHHHHhh
Q 009817 332 FGSEIIPAAIME--HDVQAYIF-RDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 332 ~~~dii~~li~~--~~V~~y~~-~~~w~dIgt~~d~~~An~~l~ 372 (524)
.. +..++++ .++..+.+ .++|.||+||+||..++..+.
T Consensus 156 ~~---~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~~ 196 (199)
T 2waw_A 156 KG---VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASVV 196 (199)
T ss_dssp TC---HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHHH
T ss_pred HH---HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHHh
Confidence 11 2333444 46888877 458999999999999987653
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=158.32 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=134.9
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
++.+||||||.||||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. . ++
T Consensus 3 ~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~-~-------~g- 64 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAK-Q-------FG- 64 (229)
T ss_dssp CEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHH-H-------TT-
T ss_pred cEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHH-H-------cC-
Confidence 4789999999999994 4999999999 99999999999998 699999994 455655553 2 22
Q ss_pred CeEEEEcccc-CCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 173 GFVEVLAATQ-TPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 173 ~~V~vl~~~q-~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
++++.... ... + ..+..++|+.++..+. ..+.+++++||.-+ . .++.++++.|.+.+++.++.+.
T Consensus 65 --~~~~~~~~~~~~----~-~~~~~~~v~~al~~~~-----~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 65 --AQVHRRSSETSK----D-SSTSLDAIVEFLNYHN-----EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp --CEEEECCGGGSS----T-TCCHHHHHHHHHTTCT-----TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred --CEEEeChhhhcC----C-CCcHHHHHHHHHHhcC-----CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 23332111 000 0 1244578888776552 24789999999843 3 5689999999888777666555
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
+..+ +..+.+ .| + +..|.+++....... | ..+. ....+..++|+|+|+++.| ++
T Consensus 133 ~~~~--p~~~~v--~~--~-~~~~~~~~~~~~~~~---~------~~~~-~~~~~~~n~giY~~~~~~l---~~------ 186 (229)
T 1qwj_A 133 RRHQ--FRWSEI--QK--G-VREVTEPLNLNPAKR---P------RRQD-WDGELYENGSFYFAKRHLI---EM------ 186 (229)
T ss_dssp EECC--CEECCC--CS--S-TTCCCCBSSSBTTBC---C------CTTT-SCCEEEEEEEEEEEEHHHH---HT------
T ss_pred eccC--hhHhhc--cc--c-ccccccccccccccc---c------CCCC-CCceEEEeeEEEEEEHHHh---cc------
Confidence 4433 222322 22 2 211322111000000 0 0000 0012567999999999887 11
Q ss_pred CchhhhhHHhhhhcCceEEE-Eec-CeEeecCCHHHHHHHHHHhhcc
Q 009817 330 NDFGSEIIPAAIMEHDVQAY-IFR-DYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y-~~~-~~w~dIgt~~d~~~An~~l~~~ 374 (524)
.+.....+ .+ ..+ ++|.||||++||..|+..+...
T Consensus 187 ---------~~~~g~~~-~~~~~~~~~~~dIdt~~Dl~~a~~~~~~~ 223 (229)
T 1qwj_A 187 ---------GYLQGGKM-AYYEMRAEHSVDIDVDIDWPIAEQRVLRF 223 (229)
T ss_dssp ---------TCSSCSSE-EEEECCGGGCCCHHHHCSHHHHHHHHHHH
T ss_pred ---------ccccCCeE-EEEECCcccccCCCCHHHHHHHHHHHHHh
Confidence 11122344 44 555 6899999999999999877653
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=155.62 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=93.4
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|++||||||.|+||+| .||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++.+.| .+. ..
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~-----~~~-~~ 69 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAY-----KDY-KN 69 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHT-----TTT-TE
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhc-----cCC-CC
Confidence 6899999999999987 79999999999 9999999999999999999999999888888886433 111 12
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--cccCHHHHHHHHHH-----cCCcEEEE
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVD-----RDADITIS 247 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l--~~~dl~~ll~~h~~-----~~ad~tl~ 247 (524)
+.++... ..|++++++.++..+ .+.++++.||+- ....+.++++.|.+ .+.+..+.
T Consensus 70 ~~~~~~~----------~~g~~~si~~al~~~-------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~ 132 (196)
T 3rsb_A 70 IVVIDTS----------GKGYIEDLNECIGYF-------SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAV 132 (196)
T ss_dssp EEE------------------CCCCCTTTTTC-------SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEE
T ss_pred EEEEECC----------CCCcHHHHHHHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEE
Confidence 4544321 147778887776544 389999999993 34678999999987 56666666
Q ss_pred EEEcC
Q 009817 248 CAAVG 252 (524)
Q Consensus 248 ~~~~~ 252 (524)
+.+..
T Consensus 133 ~~p~~ 137 (196)
T 3rsb_A 133 MIPKE 137 (196)
T ss_dssp EEETT
T ss_pred EEEcc
Confidence 66654
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-17 Score=152.07 Aligned_cols=185 Identities=12% Similarity=0.173 Sum_probs=124.7
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+|.+||||||.|+||. .||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++ .. ++
T Consensus 5 ~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~-----~~---~~-- 68 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAM-----AL---DG-- 68 (197)
T ss_dssp EEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHS-----CC---TT--
T ss_pred ceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHh-----cc---CC--
Confidence 4789999999999994 79999999999 999999999999999999999998766554433 21 22
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cc-cCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l-~~-~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
+.++.... |..|++++++.++..+. ...+.+++++||+. .. ..+.++++. +.++++++...
T Consensus 69 -~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~-- 131 (197)
T 2wee_A 69 -TDVVVVED--------VERGCAASLRVALARVH----PRATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY-- 131 (197)
T ss_dssp -SEEEECC------------CCHHHHHHHHTTSC----TTEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE--
T ss_pred -CEEEECCC--------cccCHHHHHHHHHHHhc----ccCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec--
Confidence 34443211 23599999999886652 12478999999994 34 457888876 44444432211
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCc
Q 009817 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (524)
Q Consensus 252 ~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d 331 (524)
+|+ +.. -++|+++.|..+.. .. .+
T Consensus 132 ---------------~g~-------~~~------------------------------P~~~~~~~l~~l~~--~~--~~ 155 (197)
T 2wee_A 132 ---------------ADG-------VGH------------------------------PFWFSRTVFGELAR--LH--GD 155 (197)
T ss_dssp ---------------TTE-------EEE------------------------------EEEEEGGGHHHHHT--CC--ST
T ss_pred ---------------CCC-------cCC------------------------------CEEECHHHHHHHHh--CC--CC
Confidence 111 000 03778887776542 11 12
Q ss_pred hhhhhHHhhhhc--CceEEEEe-cCeEeecCCHHHHHHHHHH
Q 009817 332 FGSEIIPAAIME--HDVQAYIF-RDYWEDIGTIKSFYEANMA 370 (524)
Q Consensus 332 ~~~dii~~li~~--~~V~~y~~-~~~w~dIgt~~d~~~An~~ 370 (524)
. -+..+++. .++..+.+ .++|.||+||+||..++..
T Consensus 156 ~---~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~ 194 (197)
T 2wee_A 156 K---GVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLES 194 (197)
T ss_dssp T---HHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC
T ss_pred h---hHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHH
Confidence 1 13344444 45777776 4589999999999988754
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-15 Score=145.24 Aligned_cols=216 Identities=13% Similarity=0.146 Sum_probs=137.3
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
..|.|||||||.|+||+ ...||+|+|++|+ |||+|+++++.+++ +++|+|++++..... + +.++. +.
T Consensus 12 ~~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~---~-~~~~~----~~ 79 (234)
T 1vpa_A 12 HMNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEV---V-EKRVF----HE 79 (234)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHH---H-HTTCC----CT
T ss_pred ccCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHH---H-HHHhc----cC
Confidence 45889999999999997 2469999999999 99999999999998 899999999865432 2 22221 22
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
. .+... ... .+..++++.++..+.+ ...+.+++++||. +.. ..+..+++.+.+.++ .+++.
T Consensus 80 ~-~~~~~--~gg---------~~~~~sv~~al~~~~~---~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~~~ 142 (234)
T 1vpa_A 80 K-VLGIV--EGG---------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLAL 142 (234)
T ss_dssp T-EEEEE--ECC---------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEE
T ss_pred C-ceEEe--CCC---------CcHHHHHHHHHHHhhh---cCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEE
Confidence 1 12211 110 1377889888877742 0236788888998 444 468899988876543 34444
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
+..+ ++..++++| + .+.++.. .+..-..++|+.+.|..+++... ..
T Consensus 143 ~~~~------~~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~-~~ 188 (234)
T 1vpa_A 143 KNSD------ALVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENGG-EW 188 (234)
T ss_dssp ECCS------EEEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTCC-CC
T ss_pred ecCC------cEEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhcC-CC
Confidence 4432 122335566 5 5543211 11111345889888877665311 01
Q ss_pred CchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhcc
Q 009817 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 330 ~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~ 374 (524)
.+ ...++.. ...++..+..++.|.||+||+||..|+..+..+
T Consensus 189 ~~-~~~~~~~--~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~ 230 (234)
T 1vpa_A 189 AD-DTEPVQK--LGVKIALVEGDPLCFKVTFKEDLELARIIAREW 230 (234)
T ss_dssp SS-SHHHHHT--TTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHH
T ss_pred Cc-HHHHHHH--cCCcEEEEECCchhcCCCCHHHHHHHHHHHhcc
Confidence 11 1122221 135677777677899999999999998866543
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=151.99 Aligned_cols=204 Identities=9% Similarity=0.020 Sum_probs=126.5
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
+.+||||||.||||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++. +. . +.. . .
T Consensus 26 ~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~~---~~-----~-~~~---~---~ 83 (236)
T 2px7_A 26 VSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPPG---AE-----P-PKG---L---G 83 (236)
T ss_dssp CEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECTT---CC-----C-CTT---C---S
T ss_pred eEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCHH---HH-----H-hhc---C---C
Confidence 5699999999999984 3 9999999999 999999999 77899999999861 11 1 111 1 1
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.++.. . .|..++++.++..++ .+.+++++||. +.. ..+..+++.+.+.+ ..+.+.+..
T Consensus 84 v~~~~~--~---------~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~ 144 (236)
T 2px7_A 84 AVFLEG--G---------ATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPVP 144 (236)
T ss_dssp CEEEEC--C---------SSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEECC
T ss_pred cEEEeC--C---------CchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEecC
Confidence 344321 1 267888988876653 37899999997 444 45888998887654 344444443
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~ 332 (524)
+ ... ..+ +|++..+.++.. .+.....++|+++.|..+++........+
T Consensus 145 ~--~~~----~~~-~G~v~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~g~~~ 192 (236)
T 2px7_A 145 D--TLM----APE-GEAYGRVVPREA-------------------------FRLVQTPQGFFTALLREAHAYARRKGLEA 192 (236)
T ss_dssp S--EEE----EEC-SSSCEEEECGGG-------------------------CEEECSCEEEEHHHHHHHHHHHHHHTCCC
T ss_pred C--cEE----Eec-CCeEEecCChHh-------------------------hccccCCeEEcHHHHHHHHHHHHhcCCCc
Confidence 2 111 124 677776554211 11111356788887766554321111111
Q ss_pred --hhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 333 --GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 333 --~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
...++.. ...++..+..++.|.||+||+||..|+..+..
T Consensus 193 ~d~~~ll~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 193 SDDAQLVQA--LGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp SSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred hhHHHHHHH--cCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 1122222 13578888888899999999999999877654
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-15 Score=158.45 Aligned_cols=210 Identities=19% Similarity=0.236 Sum_probs=139.4
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceee---cCcchhHHHHHHHHHh--------cC----CCeEEEEeccCchhHHH
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCIN--------SG----INKIFVLTQFNSASLNR 157 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~--------sG----i~~I~Ivt~~~~~~l~~ 157 (524)
.+|.+||||||.||||+ ...||+|+|| .|+ |+|++.++.+.+ .| +..+++...+..+.+.+
T Consensus 101 ~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~ 176 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (505)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHH
Confidence 67999999999999995 4689999999 699 999999999876 36 77776677777888888
Q ss_pred HHHH-hhhcCCcccCCCeEEEEcccc-----CCC-------CCCCCcccCcHHHHHHHHH--HHHhhhcCCCCeEEEEcC
Q 009817 158 HIAR-TYFGNGTNFGDGFVEVLAATQ-----TPG-------ESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCG 222 (524)
Q Consensus 158 hl~~-~y~~~~~~~~~~~V~vl~~~q-----~~~-------e~~~~~~~Gta~al~~a~~--~i~~~~~~~~e~~Lvl~g 222 (524)
|+.+ .||+-. ...|.++.... ..+ ..-...+.|||+.++.+.. .+++....+.++|+|+++
T Consensus 177 ~f~~~~~fGl~----~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~ 252 (505)
T 1jv1_A 177 FFTKHKYFGLK----KENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252 (505)
T ss_dssp HHHHTGGGGSC----GGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEET
T ss_pred HHHhhhhcCCC----cCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEEC
Confidence 8853 233321 01233322000 000 0000124699999876643 233222245689999999
Q ss_pred cee-cccCHHHHHHHHHHcCCcEEEEEEE-cCCCCCCcceEEEECCCCc--EEEEEecCCcccccccccccccccCCccc
Q 009817 223 DHL-YRMDYMDFIQSHVDRDADITISCAA-VGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQE 298 (524)
Q Consensus 223 D~l-~~~dl~~ll~~h~~~~ad~tl~~~~-~~~~~a~~~g~v~id~~g~--V~~~~EKp~~~~~~~~~v~t~~~~l~~~~ 298 (524)
|.+ ...+...++..|..+++++++.+.+ ... .+.+|++..+ +|+ ++++.|+|...... .| +.-
T Consensus 253 Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~--~e~~Gvl~~~-dg~~~vvEy~E~p~~~~~~---~~-------~~g 319 (505)
T 1jv1_A 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNP--TEPVGVVCRV-DGVYQVVEYSEISLATAQK---RS-------SDG 319 (505)
T ss_dssp TBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST--TCSCCEEEEE-TTEEEEECGGGSCHHHHHC---BC-------TTS
T ss_pred CccccccchHHHHHHHHHcCCCEEEEEEEccCC--ccCcceEEEE-CCeEEEEEEeeCCHHHhhh---cc-------ccc
Confidence 996 7777778999999999999998886 333 3579988764 355 44555555422100 00 000
Q ss_pred cccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 299 ~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
....+..++|+|+|+.++|..+.+.
T Consensus 320 -~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 320 -RLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp -SBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred -ccccceeeEEEEEecHHHHHHHHHh
Confidence 0123678999999999999887763
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-14 Score=138.25 Aligned_cols=217 Identities=15% Similarity=0.140 Sum_probs=144.5
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCc-hhHHHHHHHhhhcCCcccC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~-~~l~~hl~~~y~~~~~~~~ 171 (524)
.+.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.++ .+++|+|++++.. +.+.+++ ..
T Consensus 7 ~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~-----~~----- 72 (231)
T 3q80_A 7 EVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQIL-----GH----- 72 (231)
T ss_dssp CEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHH-----GG-----
T ss_pred ceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHh-----cC-----
Confidence 4789999999999996 3579999999999 9999999999997 5999999998865 2332222 11
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
.+.++... .+..++++.++..+.+. ...+.+|++.||. +.. ..+..+++.+.+ +.+..+.+.
T Consensus 73 --~v~~v~gg-----------~~r~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~ 136 (231)
T 3q80_A 73 --RAMIVAGG-----------SNRTDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVL 136 (231)
T ss_dssp --GCEEEECC-----------SSHHHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEE
T ss_pred --CeEEEcCC-----------CchHHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEE
Confidence 13333211 13468888888766420 1147899999998 444 457888888765 345667777
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC-
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~- 328 (524)
++.++ +...+++|.|....+. ... +.+.+ -+.|+.+.|.+.++.....
T Consensus 137 p~~dt------~~~~~~~g~v~~~~~r---~~l---------------------~~~qT-Pq~F~~~~L~~a~~~~~~~n 185 (231)
T 3q80_A 137 PLSDT------IKAVDANGVVLGTPER---AGL---------------------RAVQT-PQGFTTDLLLRSYQRGSLDL 185 (231)
T ss_dssp CCSSC------EEEECTTSBEEECCCG---GGE---------------------EEECS-CEEEEHHHHHHHHHHHTC--
T ss_pred eccCC------EEEEcCCCcEEEecch---hhe---------------------EEEcC-CcEEEHHHHHHHHHHHHhhc
Confidence 77652 1224677877654321 110 22334 4899999988877764432
Q ss_pred CCchhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHh
Q 009817 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 329 ~~d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l 371 (524)
...+..|....+.. ..+|..+.-+..++.|+||+||..|+..+
T Consensus 186 ~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 186 PAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp ---CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 12223443333322 36777776666799999999999998765
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=143.94 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=113.3
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|.++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++... ++ +. +
T Consensus 12 ~~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~-----~~-----~ 71 (201)
T 2e8b_A 12 SKVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FS-----FL-----N 71 (201)
T ss_dssp CSCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GG-----GG-----T
T ss_pred ccCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hh-----cC-----C
Confidence 445789999999999997 69999999999 9999999999988 9999999988653 11 11 1
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccC-HHH-HHHHHHHcCCcEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMD-FIQSHVDRDADITISC 248 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~d-l~~-ll~~h~~~~ad~tl~~ 248 (524)
++++.... +..|++++|+.++..+. .+.+++++||+.+ ..+ +.. ++ +.++++.
T Consensus 72 ---~~~v~~~~--------~~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~- 127 (201)
T 2e8b_A 72 ---APVVLDEF--------EESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS- 127 (201)
T ss_dssp ---CCEEECCC--------SSCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE-
T ss_pred ---ceEEecCC--------CCCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE-
Confidence 33343221 12599999999987763 4789999999954 433 455 54 1222110
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
.. +|+ .....|+| |+++++..+.+... .
T Consensus 128 --------------~~--~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~-~ 155 (201)
T 2e8b_A 128 --------------VA--KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIK-K 155 (201)
T ss_dssp --------------EE--ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHH-T
T ss_pred --------------ec--CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHH-c
Confidence 00 010 12467999 99997765433211 1
Q ss_pred CCchhhhhHHhhhhcCceEEEEec--CeEe--ecCCHHHHHHHHHHh
Q 009817 329 SNDFGSEIIPAAIMEHDVQAYIFR--DYWE--DIGTIKSFYEANMAL 371 (524)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~y~~~--~~w~--dIgt~~d~~~An~~l 371 (524)
......+++. ..++..+.++ +.|. |||||+||..++..+
T Consensus 156 g~~~~~~~l~----~~~~~~~~~~~~~~~~~~dintpedl~~~~~~~ 198 (201)
T 2e8b_A 156 GDYRIWALLK----DVGYNEVEIPEELRYTLLNMNTKEDLKRILAIE 198 (201)
T ss_dssp TCCCHHHHHH----HHCCEEEECCGGGGGGGCCSCCC----------
T ss_pred CCchHHHHHH----HCCeEEeccccccchhhcCCCCHHHHHHHHHHh
Confidence 1122334443 3356777774 4699 999999999887543
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-14 Score=149.68 Aligned_cols=347 Identities=14% Similarity=0.159 Sum_probs=202.0
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeec-CcchhHHHHHHHHHhcCCC-----eEEEEec-cCchhHHHHHH-H-hh
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINSGIN-----KIFVLTQ-FNSASLNRHIA-R-TY 163 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~sGi~-----~I~Ivt~-~~~~~l~~hl~-~-~y 163 (524)
+++.+||||||.||||+ ...||||+||+ |+ |++++.++++...|.. .++|++. +..+.+.+|+. + .|
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 47899999999999998 56899999999 99 9999999999987633 4555554 55778888885 3 34
Q ss_pred hcCC---cc-cCCCeEEEEcccc-C----CCC-CCCCcccCcHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecc-cCH
Q 009817 164 FGNG---TN-FGDGFVEVLAATQ-T----PGE-SGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR-MDY 230 (524)
Q Consensus 164 ~~~~---~~-~~~~~V~vl~~~q-~----~~e-~~~~~~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~gD~l~~-~dl 230 (524)
|+-. +. |.-+.+..+..+. . +.+ .....+.|||+++..+. ..+++....+.++++|+++|.+.. .|+
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~ 229 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK 229 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence 4421 11 2111122211110 0 000 01122369999987551 112221124578999999999884 577
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEEC------CCCc-------E--EEEEecCCcccccccccccccccCC
Q 009817 231 MDFIQSHVDRDADITISCAAVGESRASDYGLVKID------NMGR-------I--AQFAEKPSGANLKAMQVDTSLLGFS 295 (524)
Q Consensus 231 ~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id------~~g~-------V--~~~~EKp~~~~~~~~~v~t~~~~l~ 295 (524)
.++..|.++++++++.+.+..... ..+|++..+ .+|+ + .++.|-|..... +. + +.
T Consensus 230 -~llg~~~~~~ad~~~~v~~k~~~d-~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~-~~---~---g~- 299 (505)
T 2oeg_A 230 -RVLAYMEKEKIDFLMEVCRRTESD-KKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADME-SF---Q---DI- 299 (505)
T ss_dssp -HHHHHHHHHTCSEEEEEEECCTTC-CSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHH-HH---H---CT-
T ss_pred -HHHHHHHhcCCcEEEEEEEecCCc-cceeEEEEecccccccCCccccccCceeEEEeccCChhhhh-cc---c---Cc-
Confidence 999999999999999998876632 468887762 4566 3 333333322110 00 0 00
Q ss_pred ccccccCCcceeeeEEEEeHHHHHHHHHhh-----CCC-----C--------------CchhhhhHHhhhhcCceEEEEe
Q 009817 296 PQEARKCPYVASMGVYVFKKDVLFKLLRWR-----YPT-----S--------------NDFGSEIIPAAIMEHDVQAYIF 351 (524)
Q Consensus 296 ~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~-----~~~-----~--------------~d~~~dii~~li~~~~V~~y~~ 351 (524)
..-.+.++....|+-+.|.++++.. .+. . +-+..|+++.+ .+..++.+
T Consensus 300 -----~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~---~~~~~~~V 371 (505)
T 2oeg_A 300 -----NKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMF---ESASAIVV 371 (505)
T ss_dssp -----TTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSC---TTCEEEEC
T ss_pred -----cccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhc---CcceEEEe
Confidence 0123478999999999998887752 110 0 01222333211 23445555
Q ss_pred cC-eEeecCCHHHHHHHHHHhhccCC--CccccCCCCCCCCCCccCCCeEEcC---eeeec--eEECCC-CEECceEEec
Q 009817 352 RD-YWEDIGTIKSFYEANMALTKESP--AFHFYDPKTPFYTSPRFLPPTKIDN---CRIKD--AIISHG-CFLRECTVEH 422 (524)
Q Consensus 352 ~~-~w~dIgt~~d~~~An~~l~~~~~--~~~~~~~~~~i~~~~~i~p~~~i~~---~~i~~--siIg~g-~~I~~~~i~~ 422 (524)
+- .+.-+-+.+|+..+..++..... .+.. .+.. + ...|.+.++. ..+.+ ..+..| ..|.++ .+
T Consensus 372 ~R~~FsPvKn~~dl~~~~sdly~~~~~~~~~~-~~~~-~----~~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~~--~~ 443 (505)
T 2oeg_A 372 PRSRFAPVKTCADLLALRSDAYVVTDDFRLVL-DDRC-H----GHPPVVDLDSAHYKMMNGFEKLVQHGVPSLVEC--KR 443 (505)
T ss_dssp CGGGCCCCSSHHHHHHHHSTTEEECTTCCEEE-CGGG-T----TCCCEEEECHHHHSSHHHHHHHSTTCCCBCTTE--EE
T ss_pred ccceeecccCCCCHHHHHHHHHhhcCCceEEE-cccc-c----CcCCeEEEChhHcCcHHHHHHhcCCCCCccccC--cE
Confidence 42 36677888888888777765443 2211 1100 0 1123334431 12211 233343 233332 13
Q ss_pred eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 482 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~ 482 (524)
-+|--.+..|.++.++++++..+. ....++.|.+|++++|..|...-
T Consensus 444 L~v~G~~~f~~~v~l~G~v~i~a~-------------~~~~~~~ip~g~~l~n~~~~~~~ 490 (505)
T 2oeg_A 444 VTVKGLVQFGAGNVLTGTVTIENT-------------DSASAFVIPDGAKLNDTTASPQQ 490 (505)
T ss_dssp EEEESSEECCTTCEEEEEEEEECC-------------SCSSCEECCTTCEEESCEECC--
T ss_pred EEEEcceEEccCcEEEEEEEEEec-------------CCCCcEEeCCCCEEeCceechhh
Confidence 355556788999999999887761 02234788888999988876654
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=135.67 Aligned_cols=111 Identities=11% Similarity=0.116 Sum_probs=83.4
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|.+|.+||||||.|+||+ ..||+|+|++|+ |||+|+++++.. ++++|+|++++..+.+ . .++
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~--------~~~ 65 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIY----Q--------ASG 65 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHH----H--------TTS
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHH----h--------hcC
Confidence 456899999999999997 379999999999 999999999984 6999999998865322 1 122
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecccC-HHHHHHH
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQS 236 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~d-l~~ll~~ 236 (524)
+.++...... ..|++++|+.++..+. .+.++++.||+ +...+ +..+++.
T Consensus 66 ---~~~v~~~~~~-------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 66 ---LKVIEDSLAD-------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp ---CCEECCCTTC-------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred ---CeEEecCCCC-------CCCHHHHHHHHHHhCC------CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 3344322110 1489999999887764 47899999999 45544 6777765
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=138.18 Aligned_cols=181 Identities=12% Similarity=0.167 Sum_probs=112.7
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +|+|++++..+.+ +.++. .+
T Consensus 3 ~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~-----~~~~~----~~--- 61 (197)
T 3d5n_A 3 IGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEM-----LPLLM----DQ--- 61 (197)
T ss_dssp EEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHH-----GGGCT----TS---
T ss_pred eEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHH-----HHHhc----CC---
Confidence 789999999999997 39999999999 9999999999877 8899998864433 23322 12
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+ ++... .|..|++++|+.++..+. ..+.+++++||+ +.. ..+.++++.+ +.++++++...
T Consensus 62 ~-~v~~~--------~~~~G~~~si~~al~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~--- 123 (197)
T 3d5n_A 62 I-VIYNP--------FWNEGISTSLKLGLRFFK-----DYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH--- 123 (197)
T ss_dssp C-EEECT--------TGGGCHHHHHHHHHHHTT-----TSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE---
T ss_pred E-EEECC--------CCCCCHHHHHHHHHHhhc-----cCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe---
Confidence 3 33221 133699999999988774 237899999999 444 3478888776 44555433221
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCch
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~ 332 (524)
+|+ +.. + .+|+++.+..+.. . ....+
T Consensus 124 --------------~g~-------~~~-----------------------P-------~~~~~~~l~~l~~-l-~g~~~- 149 (197)
T 3d5n_A 124 --------------KGE-------RGN-----------------------P-------VLISKSLFNEIEK-L-RGDVG- 149 (197)
T ss_dssp --------------TTE-------ECS-----------------------C-------EEEEHHHHHHHHH-C-CTTCC-
T ss_pred --------------CCc-------ccC-----------------------C-------EEECHHHHHHHHc-c-CCCcc-
Confidence 010 000 1 2788888876652 1 22111
Q ss_pred hhhhHHhhhhc--CceEEEEec--CeEeecCCHHHHHHHHHHhh
Q 009817 333 GSEIIPAAIME--HDVQAYIFR--DYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 333 ~~dii~~li~~--~~V~~y~~~--~~w~dIgt~~d~~~An~~l~ 372 (524)
+..++++ .++..+..+ +.|.||+||+||..++..+.
T Consensus 150 ----~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~ 189 (197)
T 3d5n_A 150 ----ARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHP 189 (197)
T ss_dssp ----THHHHTTSCGGGEEEEECCGGGTCCTTTC-----------
T ss_pred ----HHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhc
Confidence 1223333 357777765 46899999999998876554
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-14 Score=139.78 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=21.0
Q ss_pred hcCceEEEEecCe----EeecCCHHHHHHHHHHhhcc
Q 009817 342 MEHDVQAYIFRDY----WEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 342 ~~~~V~~y~~~~~----w~dIgt~~d~~~An~~l~~~ 374 (524)
...++++|.+.++ |.|+++ |+++|+.+++.
T Consensus 37 ~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~ 70 (240)
T 3r8y_A 37 ETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVD 70 (240)
T ss_dssp TTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEE
T ss_pred CcceEEEcCCCeEEEccHHHHHH---HHHhccceech
Confidence 3456666666555 988887 88898877643
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-14 Score=155.54 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=65.8
Q ss_pred ccCCCeEEcC-eee-eceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeC
Q 009817 392 RFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 468 (524)
Q Consensus 392 ~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig 468 (524)
.+.+++.|+. +.+ .++.||++|+|+ ++.|.+++||++|.|+++|.|.+++|..+ +.||
T Consensus 275 ~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~-------------------~~Ig 335 (496)
T 3c8v_A 275 GSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN-------------------CVTA 335 (496)
T ss_dssp -CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEES-------------------CEEC
T ss_pred ccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCC-------------------CEEC
Confidence 3344444432 333 368888888888 67778899999999999999998888887 8899
Q ss_pred CCcEEeeeEECCCCEECCCcEEeCC
Q 009817 469 RNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 469 ~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+++.|.+|+||+||.||.+++|.++
T Consensus 336 ~~a~I~gv~IGd~v~IG~~a~I~~~ 360 (496)
T 3c8v_A 336 HGGKIINAHLGDMIFTGFNSFLQGS 360 (496)
T ss_dssp TTCEEESEEEEETCEECTTCEEECC
T ss_pred CCcEEcCceECCCcEECCCCEEeCC
Confidence 9999999999999999999999876
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-12 Score=133.34 Aligned_cols=209 Identities=12% Similarity=0.127 Sum_probs=142.9
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceee---cCcchhHHHHHHHHHh-------------cCCCeEEEEeccCchhHH
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCIN-------------SGINKIFVLTQFNSASLN 156 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~-------------sGi~~I~Ivt~~~~~~l~ 156 (524)
.++.+|+||||.||||+ ...||+|+|| .|+ |++++.++.+.+ .+|.-+++...+..+.+.
T Consensus 34 gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 56899999999999995 4789999999 899 999999988864 477766666677778888
Q ss_pred HHHHH-hhhcCCcccCCCeEEEEccccCC--CCCC----------CCcccCcHHHHHHHH--HHHHhhhcCCCCeEEEEc
Q 009817 157 RHIAR-TYFGNGTNFGDGFVEVLAATQTP--GESG----------KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILC 221 (524)
Q Consensus 157 ~hl~~-~y~~~~~~~~~~~V~vl~~~q~~--~e~~----------~~~~~Gta~al~~a~--~~i~~~~~~~~e~~Lvl~ 221 (524)
+++.+ .||+-.. ..|.++....-| ...+ ...+.|+++....+. ..++++...+.+++++.+
T Consensus 110 ~~f~~~~~fGl~~----~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~n 185 (405)
T 3oc9_A 110 NYFKEHQYFGLSS----EQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHN 185 (405)
T ss_dssp HHHHHTGGGGSCT----TSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEC
T ss_pred HHHHhCcccCCCc----cceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 88864 3344210 123322100000 0000 011258888777543 234444445778999999
Q ss_pred Cce-ecccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEE-ECCCCcEEEEEecCCcccccccccccccccCCcccc
Q 009817 222 GDH-LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (524)
Q Consensus 222 gD~-l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~-id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~ 299 (524)
.|. |.......|+..|.++++++++-+.+...+. ...|.+. .|...+|+++.|.|+. . +.-..+..
T Consensus 186 vDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~d-ek~Gvl~~~dg~~~vvEysei~~e-~-e~~~~~g~--------- 253 (405)
T 3oc9_A 186 VDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKE-EKVGVLVKEQERIKVVEYTELTDE-L-NKQLSNGE--------- 253 (405)
T ss_dssp TTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEEETTEEEEECGGGCCTT-T-TCBCTTSC---------
T ss_pred CCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCC-CccceEEEECCeeEEEEEeeCCHH-H-hhcCCCCc---------
Confidence 999 8888888999999999999999888876531 4678765 4655578888887775 2 11111110
Q ss_pred ccCCcceeeeEEEEeHHHHHHHH
Q 009817 300 RKCPYVASMGVYVFKKDVLFKLL 322 (524)
Q Consensus 300 ~~~~~l~~~GIYvf~~~vL~~ll 322 (524)
...+..+.++++|+.++|.+++
T Consensus 254 -l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 254 -FIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp -BSSCEEEEEEEEEEHHHHHHHT
T ss_pred -eeeccceeEeeecCHHHHHHhh
Confidence 1235678999999999998876
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=137.65 Aligned_cols=213 Identities=17% Similarity=0.259 Sum_probs=141.0
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhc--------C------CCeEEEEeccCchhH
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------G------INKIFVLTQFNSASL 155 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~s--------G------i~~I~Ivt~~~~~~l 155 (524)
.+|.+||||||.|||| +...||+|+||+ |+ |++++.++.+... | |..+++.+.+..+.+
T Consensus 102 gkvavvlLaGG~GTRL---g~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRL---GSSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGG---TCSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccC---CCCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 4699999999999999 467899999999 99 9999999999886 6 888888888888888
Q ss_pred HHHHHH-hhhcCCcccCCCeEEEEccccCCC--CCC-----------CCcccCcHHHHHHHHH--HHHhhhcCCCCeEEE
Q 009817 156 NRHIAR-TYFGNGTNFGDGFVEVLAATQTPG--ESG-----------KNWFQGTADAVRQFTW--VFEDAKNRNIENVAI 219 (524)
Q Consensus 156 ~~hl~~-~y~~~~~~~~~~~V~vl~~~q~~~--e~~-----------~~~~~Gta~al~~a~~--~i~~~~~~~~e~~Lv 219 (524)
.+|+.+ .||+-... .|.++....-|- +.+ ...+.|+|+.+..+.. .++++...+.+++.+
T Consensus 178 ~~~~~~~~~fgl~~~----~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v 253 (486)
T 2yqc_A 178 ESFFIENNYFGLNSH----QVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHM 253 (486)
T ss_dssp HHHHHHTGGGGSCGG----GEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEE
T ss_pred HHHHhhccccCCCcc----eEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEE
Confidence 888864 34442211 232211000000 001 0124699998865532 233333357899999
Q ss_pred EcCceecc--cCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECC-CC--cEEEEEecCCcccccccccccccccC
Q 009817 220 LCGDHLYR--MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-MG--RIAQFAEKPSGANLKAMQVDTSLLGF 294 (524)
Q Consensus 220 l~gD~l~~--~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~-~g--~V~~~~EKp~~~~~~~~~v~t~~~~l 294 (524)
.+.|.+.- .| -.++..|.++++++++.+.+...+ ...+|++.... +| +|+++.|+|...... .|.+
T Consensus 254 ~~vDN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~---~~~~---- 324 (486)
T 2yqc_A 254 YCVDNCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQDNQKPCVIEYSEISQELANK---KDPQ---- 324 (486)
T ss_dssp EETTBTTCCTTC-HHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEETTTTEEEEECGGGSCHHHHHC---EETT----
T ss_pred ECCCCceeeccC-HHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEecCCCEEEEEEecCCHHHhhc---cccc----
Confidence 99997554 34 467889999999999988876432 14678776431 34 477888887532110 0000
Q ss_pred CccccccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 295 SPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 295 ~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
.+. ....+..++|+|+|+.++|.+.++.
T Consensus 325 ~~~--~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 325 DSS--KLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp EEE--EESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccc--cccccceeEEEEEEeHHHHHHHHHh
Confidence 000 0123678999999999999885554
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-12 Score=121.22 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=83.1
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +|+|++++ .+.+ +.+.+ .++
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~-~~~~~-------~~~--- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQA-EKLSS-------RYE--- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHH-HHHHT-------TSC---
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHH-HHHHH-------hcC---
Confidence 689999999999996 68999999999 9999999999877 99999974 2222 22221 122
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCCcEEE
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITI 246 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tl 246 (524)
+.++..... -.|...+|+.++..+ . +.+ ++.||. +... .+..+++.+.+.++++.+
T Consensus 60 ~~~v~d~~~--------~~G~~~si~~gl~~~-~------~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 60 AEFIWDLHK--------GVGSIAGIHAALRHF-G------SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp SCEECCTTC--------CCSHHHHHHHHHHHH-S------SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CeEEecCCC--------CCChHHHHHHHHHHc-C------CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 334432221 147889999988766 2 678 999999 4444 468888887765666544
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.5e-13 Score=137.21 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=124.6
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~-sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
.++.+||||||.||||. ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+.+ +.++..
T Consensus 2 mki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i-----~~~~~~----- 66 (371)
T 1w55_A 2 SEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYM-----KKFTKN----- 66 (371)
T ss_dssp CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHH-----HTTCSS-----
T ss_pred CccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHH-----HHHhCC-----
Confidence 35789999999999997 2479999999999 999999999998 58999999998 43322 222211
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
+.++. .. .|..++++.++..++ .+.++++.||. +.. ..+.++++.+.+. +..+.+.
T Consensus 67 ---v~~v~--~g---------~g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~~ 124 (371)
T 1w55_A 67 ---YEFIE--GG---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPAL 124 (371)
T ss_dssp ---SEEEE--CC---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEE
T ss_pred ---CEEEe--CC---------CChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEEE
Confidence 33331 11 377899988876543 47899999998 334 4578888877654 3445454
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCccee-eeEEEEeHHHHHHHHHhhCCC
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-MGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~-~GIYvf~~~vL~~ll~~~~~~ 328 (524)
+..+. ++. + .+.+... .+.. ..-++|+.+.|..+++... .
T Consensus 125 ~~~d~-------vk~-----v---~~t~~r~-----------------------~l~~~~~P~~f~~~~l~~~~~~~~-~ 165 (371)
T 1w55_A 125 KVADT-------TLF-----D---NEALQRE-----------------------KIKLIQTPQISKTKLLKKALDQNL-E 165 (371)
T ss_dssp CCCSC-------EEE-----T---TEEECGG-----------------------GCCEECSCEEEEHHHHHHHTSSCC-C
T ss_pred EeecC-------eee-----e---eeecCcc-----------------------ceeecCCcceecHHHHHHHHHhcc-c
Confidence 44331 110 0 0111110 0111 1125688887766543221 0
Q ss_pred CCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHH
Q 009817 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
..+ ...++.. ...++..+..++.|.||+||+||..|+
T Consensus 166 ~td-~~~ll~~--~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 166 FTD-DSTAIAA--MGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp CSS-HHHHHHT--TTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred ccC-HHHHHHh--CCCcEEEEECCccccCCCCHHHHHHHH
Confidence 111 0112211 135788887777899999999998886
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-12 Score=126.04 Aligned_cols=149 Identities=13% Similarity=0.252 Sum_probs=92.5
Q ss_pred HHHHHHHhhccCCC--ccccCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe-----ceEEcCCcEECCCC
Q 009817 364 FYEANMALTKESPA--FHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE-----HSIVGERSRLDYGV 435 (524)
Q Consensus 364 ~~~An~~l~~~~~~--~~~~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~-----~siIg~~~~Ig~~~ 435 (524)
..++|+.++...|. |.+++....+.+++++.|+++|.+ ++.||++|+|+ ++.|. +++||++|.|+++|
T Consensus 37 ~~~~~~~~~~~~p~~~~~~~~~~~~I~~~~~I~~~a~I~g----~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~ 112 (247)
T 1qre_A 37 ITVDEFSNIRENPVTPWNPEPSAPVIDPTAYIDPQASVIG----EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGV 112 (247)
T ss_dssp -CCCCCCSEECCCCBTTBSSCCCCEECTTCEECTTCEEEE----SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTC
T ss_pred chhhhhhhccCCCCccccccCCCcEECCCcEECCCCEEeC----CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCe
Confidence 34566666554433 556666667777777777777742 45555555555 34443 44899999999999
Q ss_pred EEeceEEeCC--ccc-----cchh-hHHhhhcCCccceEeCCCcEEee-eEECCCCEECCCcEEeCCCCCCCCCCceEEe
Q 009817 436 ELKDTVMLGA--DYY-----QTES-EIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDEADRPELGFYIR 506 (524)
Q Consensus 436 ~I~~s~i~~~--~~~-----~~~~-~~~~~~~~g~~~~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~ 506 (524)
.|........ ..+ +... .-...++++ +.||+++.|.. |+||++|.||.+++|.+ .++.++..|.
T Consensus 113 ~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~---v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~----v~Ig~~~~Ig 185 (247)
T 1qre_A 113 VLHALETINEEGEPIEDNIVEVDGKEYAVYIGNN---VSLAHQSQVHGPAAVGDDTFIGMQAFVFK----SKVGNNCVLE 185 (247)
T ss_dssp EEEECCSBCTTSCBCGGGCEEETTEEESEEECTT---CEECTTCEEEEEEEECTTCEECTTCEEEE----EEECTTCEEC
T ss_pred EEEecccccccCcccccceeeccCccCceEECCC---CEECCCCEEcCCcEECCCCEECCCCEEec----eEECCCCEEC
Confidence 9964310000 000 0000 001333444 88999999987 99999999999999986 3566677777
Q ss_pred cCcEE----EcCCCEeCCCcc
Q 009817 507 SGITI----IMEKATIEDGMV 523 (524)
Q Consensus 507 ~g~~v----v~~~~~i~~gtv 523 (524)
.|.++ |++++.|++|++
T Consensus 186 agsvV~~~~I~~~~~v~~g~v 206 (247)
T 1qre_A 186 PRSAAIGVTIPDGRYIPAGMV 206 (247)
T ss_dssp TTCEEESCEECTTBEECTTCE
T ss_pred CCCEECCeEeCCCCEECCCCE
Confidence 77555 455555555554
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=114.69 Aligned_cols=114 Identities=18% Similarity=0.325 Sum_probs=79.1
Q ss_pred CCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEec----eEEcCCcEECCCCEEe-----ceEEeCCccccchh
Q 009817 383 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELK-----DTVMLGADYYQTES 452 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~----siIg~~~~Ig~~~~I~-----~s~i~~~~~~~~~~ 452 (524)
+...+.+.+.+.|++.+. .++.||++|.|+ ++.|.. ++||++|.|+++|.|. ++.+..+
T Consensus 11 ~~~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~------- 79 (173)
T 1xhd_A 11 KKPKIASSAFIADYVTIT----GDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD------- 79 (173)
T ss_dssp BCCEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT-------
T ss_pred CCCEECCCcEECCCCEEE----CCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCC-------
Confidence 344455555555555554 367788888887 566654 7999999999999998 5666655
Q ss_pred hHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 453 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 453 ~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+.||+++.|++|+||++|.||.+++|.... ++.++..|..| .+|.++..|+++++
T Consensus 80 ------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~---~Ig~~~~Ig~~-s~V~~~~~i~~~~v 134 (173)
T 1xhd_A 80 ------------VTVGHQVILHSCHIKKDALIGMGSIILDGA---EIGEGAFIGAG-SLVSQGKKIPPNTL 134 (173)
T ss_dssp ------------CEECTTCEEESCEECTTCEECTTCEECTTC---EECTTCEECTT-CEECTTCEECTTEE
T ss_pred ------------CEECCCCEEeCCEECCCCEEcCCCEEcCCC---EECCCCEECCC-CEECCCcEeCCCCE
Confidence 899999999999999999999999998652 33334444444 34444445555544
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=117.08 Aligned_cols=118 Identities=14% Similarity=0.285 Sum_probs=83.0
Q ss_pred cccCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEe------ceEEeCCcc
Q 009817 379 HFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELK------DTVMLGADY 447 (524)
Q Consensus 379 ~~~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~------~s~i~~~~~ 447 (524)
.+.++...+...+.+.|++.|.+ ++.||++|.|+ ++.|. +++||++|.|+++|.|. ++++.++
T Consensus 28 ~~~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~-- 101 (191)
T 3ixc_A 28 PYAGVSPSVDSTAFIAGNARIIG----DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKF-- 101 (191)
T ss_dssp CBTTBCCEECTTSEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTT--
T ss_pred cccCCCCEECCCCEECCCCEEeC----CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCC--
Confidence 34445555666666666666643 56677777776 45554 45999999999999997 5666666
Q ss_pred ccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 448 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 448 ~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+.||+++.|.+|+||++|.||.+++|.+.. ++.++..|..| ++|.++..|+++++
T Consensus 102 -----------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~---~Ig~~~~Ig~g-svV~~~~~i~~~~~ 156 (191)
T 3ixc_A 102 -----------------VTIGHSCILHACTLGNNAFVGMGSIVMDRA---VMEEGSMLAAG-SLLTRGKIVKSGEL 156 (191)
T ss_dssp -----------------CEECTTCEECSCEECTTCEECTTCEECTTC---EECTTCEECTT-CEECTTCEECTTEE
T ss_pred -----------------CEECCCCEEECCEECCCCEECCCCEEeCCe---EECCCCEECCC-CEECCCcCcCCCeE
Confidence 899999999999999999999999998752 33444444444 34455555555554
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-11 Score=124.95 Aligned_cols=84 Identities=8% Similarity=0.074 Sum_probs=46.2
Q ss_pred eEeecCCHHHHHHHHHHhhccCCCccccCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCc
Q 009817 354 YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERS 429 (524)
Q Consensus 354 ~w~dIgt~~d~~~An~~l~~~~~~~~~~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~ 429 (524)
.|.-+.+|...+.....+....+....++|.+.+.+++.++++++|+. +.|. ++.||++|+|+ ++.|. ++.||++|
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 157 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDC 157 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSC
T ss_pred cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 355677787666555555544433356677777777777666666642 4443 35555555555 34443 44555555
Q ss_pred EECCCCEE
Q 009817 430 RLDYGVEL 437 (524)
Q Consensus 430 ~Ig~~~~I 437 (524)
.|++++.|
T Consensus 158 ~I~~~~~I 165 (357)
T 4e79_A 158 FIDSYVTI 165 (357)
T ss_dssp EECTTCEE
T ss_pred EECCCcEE
Confidence 44444444
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-11 Score=123.00 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=49.0
Q ss_pred eecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEE-eceEEcCCcE
Q 009817 356 EDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGERSR 430 (524)
Q Consensus 356 ~dIgt~~d~~~An~~l~~~~-~~~~~~~~~~~i~~~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i-~~siIg~~~~ 430 (524)
+-+.+|...+.....+.... .....++|.+.+.+++.++++++|. ++.|. ++.||++|+|+ ++.| .++.||++|.
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~ 153 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSR 153 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcE
Confidence 34567776555555555443 3345667777777777777777774 35554 46666666666 4555 4455555555
Q ss_pred ECCCCEE
Q 009817 431 LDYGVEL 437 (524)
Q Consensus 431 Ig~~~~I 437 (524)
|++++.|
T Consensus 154 I~~~~~I 160 (341)
T 3eh0_A 154 LWANVTI 160 (341)
T ss_dssp ECSSCEE
T ss_pred ECCCcEE
Confidence 5555555
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.1e-11 Score=122.95 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=34.7
Q ss_pred EeecCCHHHHHHHHHHhhccCC-CccccCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC
Q 009817 355 WEDIGTIKSFYEANMALTKESP-AFHFYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR 416 (524)
Q Consensus 355 w~dIgt~~d~~~An~~l~~~~~-~~~~~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~ 416 (524)
++-+.+|...+.....+....+ ....++|.+.+.+++.++++++|.. +.|. ++.||++|+|+
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~ 159 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIG 159 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence 4456677766655555554433 3346677777777766666666642 4443 34444444443
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=112.97 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=77.7
Q ss_pred CCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEec----eEEcCCcEECCCCEEec-----eEEeCCccccchh
Q 009817 383 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKD-----TVMLGADYYQTES 452 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~----siIg~~~~Ig~~~~I~~-----s~i~~~~~~~~~~ 452 (524)
....+.+++.+.|++.+.+ ++.||++|.|+ ++.|.. ++||++|.|+++|.|.. +.+..+
T Consensus 9 ~~~~i~~~~~I~~~a~i~g----~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------- 77 (173)
T 1v3w_A 9 KKPRIHPSAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY------- 77 (173)
T ss_dssp BCCEECTTCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS-------
T ss_pred CCCEECCCCEECCCCEEeC----CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCC-------
Confidence 3444566666666666643 56777777776 455543 89999999999999973 444444
Q ss_pred hHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 453 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 453 ~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+.|++++.|++|+||+++.||.++.|.+.. .+.++..|..| ++|.++..|+++++
T Consensus 78 ------------~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~---~Ig~~~~Ig~~-s~V~~~~~i~~~~~ 132 (173)
T 1v3w_A 78 ------------VTIGHNAMVHGAKVGNYVIIGISSVILDGA---KIGDHVIIGAG-AVVPPNKEIPDYSL 132 (173)
T ss_dssp ------------CEECTTCEEESCEECSSEEECTTCEECTTC---EECSSEEECTT-CEECTTCEECTTEE
T ss_pred ------------CEECCCCEECCCEECCCCEECCCCEEeCCC---EECCCCEECCC-CEECCCcEeCCCcE
Confidence 889999999999999999999999988752 33444444444 34444445555544
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=114.20 Aligned_cols=116 Identities=14% Similarity=0.240 Sum_probs=79.4
Q ss_pred cCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEE------------eceEEe
Q 009817 381 YDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVEL------------KDTVML 443 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I------------~~s~i~ 443 (524)
......+...+.+.|+++|.+ ++.||++|+|+ ++.|. ++.||++|.|+++|.| .++.+.
T Consensus 12 ~~~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig 87 (187)
T 3r3r_A 12 KNLFPGIGQRVMIDTSSVVIG----DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIG 87 (187)
T ss_dssp TTBCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEEC
T ss_pred cccCcccCCCeEECCCCEEEC----ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEEC
Confidence 334455666677777776643 56677777776 45554 3599999999999999 344444
Q ss_pred CCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
.+ +.||+++.|++|+||++|.||.+++|.... .+.++..|..| ++|.++..|+++++
T Consensus 88 ~~-------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~---~Ig~~~~Ig~~-s~V~~~~~i~~~~v 144 (187)
T 3r3r_A 88 ED-------------------VTVGHKVMLHGCTIGNRVLVGMGSIVLDGA---IIEDDVMIGAG-SLVPQHKRLESGYL 144 (187)
T ss_dssp SS-------------------CEECTTCEEESCEECSSEEECTTCEECTTC---EECSSEEECTT-CEECTTCEECTTEE
T ss_pred CC-------------------CEECCCCEEeCcEECCCCEECCCCEECCCC---EECCCCEECCC-CEECCCcCcCCCcE
Confidence 44 899999999999999999999999997652 33344444444 34444445555544
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-11 Score=112.77 Aligned_cols=114 Identities=18% Similarity=0.293 Sum_probs=80.3
Q ss_pred CCCCCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEece------------EEeCC
Q 009817 383 PKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT------------VMLGA 445 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~~s------------~i~~~ 445 (524)
....+...+.+.|+++|.+ ++.||++|.|+ ++.|. ++.||++|.|++++.|..+ .+..+
T Consensus 18 ~~~~ig~~~~I~~~~~i~~----~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~ 93 (189)
T 3r1w_A 18 ISPKLGERVFVDRSSVIIG----DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDD 93 (189)
T ss_dssp BCCEECTTCEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSS
T ss_pred cCCEECCCcEECCCCEEee----eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCC
Confidence 3445666677777777643 56777777776 45553 4699999999999999764 33333
Q ss_pred ccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 446 DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 446 ~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
+.||+++.|.+|+||++|.||.+++|.... ++.++..|..| ++|.++..|+++++
T Consensus 94 -------------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~v---~Ig~~~~Ig~~-s~V~~g~~i~~~~v 148 (189)
T 3r1w_A 94 -------------------VTIGHQAMLHGCTIGNRVLIGMKSMIMDGA---IVEDEVIVAAG-ATVSPGKVLESGFV 148 (189)
T ss_dssp -------------------EEECTTCEEESCEECSSEEECTTCEECTTC---EECSSCEECTT-CEECTTCEECTTEE
T ss_pred -------------------CEECCCCEEeCcEECCCcEECCCCEEcCCC---EECCCCEEccC-CEECCCCEeCCCCE
Confidence 899999999999999999999999998652 34444555544 34555555666554
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-11 Score=120.11 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=82.8
Q ss_pred cCCCCCCCCCCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEE-------------eceEEe
Q 009817 381 YDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL-------------KDTVML 443 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I-------------~~s~i~ 443 (524)
++|.+.+.+.+.+++++.|+ .|.|. ++.||++|+|+ ++.|. ++.||.+|.|+++|.| .+..|.
T Consensus 4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG 83 (270)
T 1j2z_A 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 83 (270)
T ss_dssp BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence 45666666666666777664 36664 78888888887 67776 7888888888888888 334444
Q ss_pred CCccccchhhHHh--hhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EEE
Q 009817 444 GADYYQTESEIAS--LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TII 512 (524)
Q Consensus 444 ~~~~~~~~~~~~~--~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~vv 512 (524)
.+..++..+.+.. ..+.+ ++.||+++.|. ++.|++++.||+++.|.+.. ...++.++.+|..+. +.|
T Consensus 84 ~~~~I~~~~~I~~~~~~~~~--~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~I 161 (270)
T 1j2z_A 84 EDNLIREFCMINPGTEGGIK--KTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRI 161 (270)
T ss_dssp SSCEECTTCEECCCCTTTTS--EEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred CCCEECCCeEEcCCeecCCc--cEEECCCcEECcccccCCCcEECCCcEEcCCccccCccEECCCeEEecCCEECCCcEe
Confidence 4444444333211 11111 36667766663 45555555555555555543 223445555555543 245
Q ss_pred cCCCEeCCCcc
Q 009817 513 MEKATIEDGMV 523 (524)
Q Consensus 513 ~~~~~i~~gtv 523 (524)
|+++.|++|++
T Consensus 162 G~~a~Ig~~s~ 172 (270)
T 1j2z_A 162 AKGCMIAGKSA 172 (270)
T ss_dssp CTTCEECTTCE
T ss_pred CCceEEecCcE
Confidence 55555555554
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-11 Score=114.56 Aligned_cols=128 Identities=10% Similarity=0.048 Sum_probs=75.1
Q ss_pred CCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe----ceEEcCCcEECCCCEEeceEEeCCccccchhhH-Hhhhc
Q 009817 386 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLA 459 (524)
Q Consensus 386 ~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~----~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~ 459 (524)
.|.+++.+.|.+.|.+ ++.||++|+|+ ++.|. +++||++|.|+++|.|.+............... ...++
T Consensus 14 ~I~~~a~I~~~a~I~g----~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig 89 (194)
T 3tv0_A 14 KIAPGAVVCVESEIRG----DVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIG 89 (194)
T ss_dssp EECTTCEECTTSEEES----SEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEEC
T ss_pred EECCCCEEcCCCEEeC----CCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEEC
Confidence 3445555555555543 67777777777 45553 468999999999999976543322111111111 23444
Q ss_pred CCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 460 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 460 ~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+. +.|+.++.+++|.|++++.||.+++|... .++.++..|..| ++|.+++.|||+|+|
T Consensus 90 ~~---~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~g---v~IG~~~~Igag-svV~~~~~Ip~~svv 147 (194)
T 3tv0_A 90 TN---NVFEVGCYSQAMKMGDNNVIESKAYVGRN---VILTSGCIIGAC-CNLNTFEVIPENTVI 147 (194)
T ss_dssp SS---CEECTTCEECCSEECSSCEECTTCEECTT---EEECSSCEECTT-CEECCCEEECTTEEE
T ss_pred Cc---ceEecceeEeeeeecccceecceeeECCe---EEECCCCEECCC-CEECCCcEECCCCEE
Confidence 55 66777777777888888888888887765 233334444444 455556666666653
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-11 Score=118.10 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=35.5
Q ss_pred cCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEe
Q 009817 381 YDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~ 438 (524)
++|.+.+.+.+.++++++|+. |.|. ++.||++|+|+ ++.|. ++.||++|+|++++.|.
T Consensus 7 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~ 68 (266)
T 3r0s_A 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVG 68 (266)
T ss_dssp BCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEE
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceec
Confidence 344444444445544444432 4442 57777777777 46665 57888888888888883
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=120.41 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=40.3
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEE
Q 009817 380 FYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I 437 (524)
.++|.+.|.+++.++++++|+. |.|. ++.||++|.|+ ++.|. ++.||++|.|+++|.|
T Consensus 24 ~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 85 (283)
T 4eqy_A 24 RIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASV 85 (283)
T ss_dssp CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEE
T ss_pred ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEE
Confidence 4566666666666666666643 5553 57888888887 56665 5888888888888888
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7e-11 Score=111.20 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=30.1
Q ss_pred cCCCCCCCCCCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEec-eEEcCCcEECCCCEEe
Q 009817 381 YDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEH-SIVGERSRLDYGVELK 438 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I~ 438 (524)
++|.+.+...+.+++++.|. .+.|. ++.||++|.|+ ++.|.+ +.||++|.|+.++.|.
T Consensus 6 I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~ 67 (192)
T 3mqg_A 6 IHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVY 67 (192)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEEC
T ss_pred ECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEe
Confidence 34445555555555555553 23442 46666666665 344432 5555555555555553
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-10 Score=106.36 Aligned_cols=18 Identities=6% Similarity=-0.247 Sum_probs=5.8
Q ss_pred CceEEEEecC-eEeecCCH
Q 009817 344 HDVQAYIFRD-YWEDIGTI 361 (524)
Q Consensus 344 ~~V~~y~~~~-~w~dIgt~ 361 (524)
+++.+|..++ .|..+++.
T Consensus 27 ~~v~~f~Dd~~g~~vig~~ 45 (194)
T 3bfp_A 27 YKECIFLDDFKGMKFESTL 45 (194)
T ss_dssp CSEEEEEC--------CCC
T ss_pred CeEEEEEeCCCCCeEECCc
Confidence 4555665543 35444443
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=115.83 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=36.4
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eee-eceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEE
Q 009817 380 FYDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I 437 (524)
.++|.+.+.+++.+++++.|.. +.| .++.||++|.|+ ++.|. ++.||++|+|++++.|
T Consensus 9 ~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 70 (265)
T 4e6u_A 9 LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASV 70 (265)
T ss_dssp CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEE
T ss_pred eECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEE
Confidence 3445555555555555555532 444 257777777777 56565 4778888888877777
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=116.67 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=79.8
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEe-----ceEEeCCccccc
Q 009817 380 FYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK-----DTVMLGADYYQT 450 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~-----~s~i~~~~~~~~ 450 (524)
+++|.+.|.+++.++++++|.. |.|. ++.||++|.|+ ++.|. ++.||++|+|++++.|. .+.|..+..+..
T Consensus 9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~ 88 (305)
T 3t57_A 9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88 (305)
T ss_dssp CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECT
T ss_pred eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECC
Confidence 4566666666666666666643 5554 67777777777 56665 57777777777777664 233333333333
Q ss_pred hhhHH---------------hhhcCC---------------ccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CC
Q 009817 451 ESEIA---------------SLLAEG---------------KVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EA 496 (524)
Q Consensus 451 ~~~~~---------------~~~~~g---------------~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~ 496 (524)
.+.+. ..+|++ .-++.||+++.|. +|.|++++.||+++.+.+.. ..
T Consensus 89 ~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~g~ 168 (305)
T 3t57_A 89 HAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGH 168 (305)
T ss_dssp TCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred ccEeCccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcccCCC
Confidence 22210 111111 0124555555552 46666666666666666654 23
Q ss_pred CCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 497 DRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 497 ~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
..+.++..|..+. +.||++++|++|++|
T Consensus 169 v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V 201 (305)
T 3t57_A 169 VVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVV 201 (305)
T ss_dssp CEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CEECCceEEcCCCEEcCCeEECCCCEEcCCCeE
Confidence 4445555555442 356666666666653
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=109.34 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=57.4
Q ss_pred ceEECCCCEEC-ceEEe-----ceEEcCCcEECCCCEEece---EEeCCccccchhhHHhhhcCCccceEeCCCcEEee-
Q 009817 406 DAIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN- 475 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~-----~siIg~~~~Ig~~~~I~~s---~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~- 475 (524)
++.||++|.|+ ++.|. +++||++|.|+++|.|..+ ..++.+.+. -...++++ +.|++++.|..
T Consensus 57 ~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~----~~~~IG~~---v~Ig~~~~I~~~ 129 (213)
T 3kwd_A 57 DVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQE----YSVWIGDN---VSITHMALIHGP 129 (213)
T ss_dssp SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCE----ESEEECTT---CEECTTCEEEEE
T ss_pred ceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcc----cceEECCC---cEECCCcEEcCC
Confidence 45666666666 45552 3577777777777777631 001100000 00122222 56666666654
Q ss_pred eEECCCCEECCCcEEeCCCCCCCCCCceEEecCcE----EEcCCCEeCCCccc
Q 009817 476 CIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGIT----IIMEKATIEDGMVI 524 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~----vv~~~~~i~~gtvI 524 (524)
++||++|.||.+++|.+. .+.++..|..|.+ +|++++.|++|++|
T Consensus 130 v~Ig~~v~IG~~a~I~~~----~Ig~~~~Igags~V~~~~i~~~~~v~~~~vv 178 (213)
T 3kwd_A 130 AYIGDGCFIGFRSTVFNA----RVGAGCVVMMHVLIQDVEIPPGKYVPSGMVI 178 (213)
T ss_dssp EEECTTCEECTTCEEEEE----EECTTCEECSSCEEESCEECTTBEECTTCEE
T ss_pred CEECCCCEECCCCEEeCc----EECCCCEEcCCCEECCcEeCCCCEECCCcEE
Confidence 677777777777766642 3334444444433 46777777777764
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-10 Score=108.49 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=18.2
Q ss_pred eEECCCCEEC-ceEEe-ceEEcCCcEECCCCEE
Q 009817 407 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (524)
Q Consensus 407 siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I 437 (524)
+.||++|.|+ ++.|. ++.||++|.|+++|.|
T Consensus 53 v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I 85 (205)
T 3vbi_A 53 ISIGNNVRIDDFCILSGKVTIGSYSHIAAYTAL 85 (205)
T ss_dssp EEECSSEEECTTCEEEEEEEECSSEEECTTCEE
T ss_pred eEECCCCEECCCCEEccceEECCCCEECCCeEE
Confidence 4445555554 34443 5677777777777777
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=6e-11 Score=127.23 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=140.5
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCCeEEEEc----CceecccCHHHHHHHHHHc--CC---------cEEEEEEEcCCCCCC
Q 009817 193 QGTADAVRQFTWVFEDAKNRNIENVAILC----GDHLYRMDYMDFIQSHVDR--DA---------DITISCAAVGESRAS 257 (524)
Q Consensus 193 ~Gta~al~~a~~~i~~~~~~~~e~~Lvl~----gD~l~~~dl~~ll~~h~~~--~a---------d~tl~~~~~~~~~a~ 257 (524)
++|+++++.+.+.+ ..++|++ +|.....++.+++..|.++ ++ ..++.+..+.+.-.+
T Consensus 124 L~~a~~i~~~d~~~--------~~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~L~~l~d~li~ 195 (496)
T 3c8v_A 124 LHDDEVITIKDSFL--------NKTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVDLSTIHNSVVR 195 (496)
T ss_dssp CSSCCEEEEESCEE--------ESCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEESCEEESCEEC
T ss_pred hhHhhhHHhhhhcC--------CceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceeeHHHHHHHHHH
Confidence 57777755432111 1237888 5887777777777777652 21 233433444432114
Q ss_pred cceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchhhhhH
Q 009817 258 DYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEII 337 (524)
Q Consensus 258 ~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~~dii 337 (524)
.|+.+. .|++..+.++|...-. ........+|.|.+++|..++.+.. ..+
T Consensus 196 ~~~~~~---~g~i~~~~~~pg~~~i-------------------~~~~~lnf~Y~f~~~~L~~~l~~~~-~~n------- 245 (496)
T 3c8v_A 196 YFSYVQ---TGELVGKCVEPGQIWI-------------------KSGDELEFHYSFDKAILDKYISQEA-GSC------- 245 (496)
T ss_dssp TTCEEE---SSEEESCEECTTEEEE-------------------ECTTSEEEEEECCHHHHTTTCBCCT-TSC-------
T ss_pred HHhhhc---CCceEEeeecCCceec-------------------ccccccceEEEcCHHHHHHHHhhcc-Ccc-------
Confidence 566653 4677777777753110 0122345599999988765432211 100
Q ss_pred HhhhhcCceEEEEecCeEeec--CCHHHHHHHHHHhhcc-C---CCccccCCCCCCCCCCccCCCeEEc-CeeeeceEEC
Q 009817 338 PAAIMEHDVQAYIFRDYWEDI--GTIKSFYEANMALTKE-S---PAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 410 (524)
Q Consensus 338 ~~li~~~~V~~y~~~~~w~dI--gt~~d~~~An~~l~~~-~---~~~~~~~~~~~i~~~~~i~p~~~i~-~~~i~~siIg 410 (524)
..+.|.|+ ..++++.++....... . ..-.++++.+.+...+.+++++.|. +|.|.+++||
T Consensus 246 -------------~~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG 312 (496)
T 3c8v_A 246 -------------PTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMG 312 (496)
T ss_dssp -------------CBSHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEEC
T ss_pred -------------ccceeeehhccchHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEec
Confidence 01222222 2344444432111110 0 1112344444444556666777774 4777889999
Q ss_pred CCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeee-----EECCCCEE
Q 009817 411 HGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNC-----IIDKNVKI 484 (524)
Q Consensus 411 ~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~-----iI~~~~~I 484 (524)
++|.|+ +|.|.+|+||++|.|+.++.|.+++|..+ +.||.++.|..+ +||++|.|
T Consensus 313 ~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~-------------------v~IG~~a~I~~~~~~~v~IG~~a~I 373 (496)
T 3c8v_A 313 KGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDM-------------------IFTGFNSFLQGSESSPLKIGDGCVV 373 (496)
T ss_dssp TTCEECTTCEEEEEEEEESCEECTTCEEESEEEEET-------------------CEECTTCEEECCSSSCEEECTTCEE
T ss_pred CCCEECCCceEeceEeCCCCEECCCcEEcCceECCC-------------------cEECCCCEEeCCCCcceEECCCCEE
Confidence 999999 79999999999999999999999888877 999999999865 99999999
Q ss_pred CCCcEEe
Q 009817 485 GKDVVIV 491 (524)
Q Consensus 485 g~~~~i~ 491 (524)
|.+++|.
T Consensus 374 GagsvV~ 380 (496)
T 3c8v_A 374 MPHTIID 380 (496)
T ss_dssp CTTCEEE
T ss_pred CCCCEEe
Confidence 9999998
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-10 Score=111.04 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCCCCCCCCCccCCCeEEcC-eee-eceEECCCCEEC-ceEEec-eEEcCCcEECCCCEE-------------eceE-Ee
Q 009817 382 DPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTVEH-SIVGERSRLDYGVEL-------------KDTV-ML 443 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I-------------~~s~-i~ 443 (524)
+|.+.+.+++.+++++.|+. |.| .++.||++|+|+ ++.|.. +.||++|.|++++.| ...+ |.
T Consensus 4 ~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG 83 (259)
T 3hsq_A 4 HPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIG 83 (259)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEEC
T ss_pred CCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEEC
Confidence 33444444444444444432 333 257777777776 455553 777888887777777 3233 33
Q ss_pred CCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCcEEEcCCCEeC
Q 009817 444 GADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIE 519 (524)
Q Consensus 444 ~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~ 519 (524)
.+..++..+.+..-.. +.-++.||+++.|. ++.|++++.||+++.|.+.. ...++.++.+|..+ ++|.++++|+
T Consensus 84 ~~~~Ig~~~~I~~~~~-~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~-a~V~~~v~Ig 161 (259)
T 3hsq_A 84 DHNIFREYSNIHKGTK-EDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGL-VAVHQFCFVG 161 (259)
T ss_dssp SSCEECTTCEEECCSB-TTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECSS-EEECTTCEEC
T ss_pred CCcEECCCCEECCCcc-CCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCccEECCCcEEeCC-CEECCCCEEC
Confidence 3322222222210000 00125566665553 35555566666666655554 22444555555554 3333333333
Q ss_pred CCc
Q 009817 520 DGM 522 (524)
Q Consensus 520 ~gt 522 (524)
+++
T Consensus 162 ~~~ 164 (259)
T 3hsq_A 162 DYS 164 (259)
T ss_dssp TTC
T ss_pred CCC
Confidence 333
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.2e-11 Score=120.45 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=47.4
Q ss_pred CCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEec-eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCcc
Q 009817 387 FYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEH-SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 463 (524)
Q Consensus 387 i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~ 463 (524)
+++.+.+.++++|+ +|.|.+.+|+.||.|+ ++.|.+ ++||.+|.||++|.|...+.++.....- ..-
T Consensus 148 I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~----------~~~ 217 (316)
T 3tk8_A 148 VVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPL----------QAN 217 (316)
T ss_dssp ECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSST----------TSC
T ss_pred EeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccc----------cCC
Confidence 33444444444443 2444443444455555 344433 6666666666666665443333311100 011
Q ss_pred ceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 464 ~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
|+.||++|+|. +|+|+++++||++++|..+
T Consensus 218 ~v~IGd~v~IG~~a~I~~gv~IG~g~vIgag 248 (316)
T 3tk8_A 218 PVIIEDNCFIGARSEVVEGVIVEENSVISMG 248 (316)
T ss_dssp CCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CcEECCCCEECCCCEEcCCCEECCCCEEcCC
Confidence 25666666663 5555555555555555554
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-10 Score=113.51 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=30.4
Q ss_pred eEEcCCcEECCCCEEe-ceEEeCCccccchhhH--HhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEe
Q 009817 423 SIVGERSRLDYGVELK-DTVMLGADYYQTESEI--ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~--~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 491 (524)
++||++|.|++++.|. ++.+..+..++..+.+ .+.++++ +.|+.++.|. +|+||+++.|+.++.|.
T Consensus 71 ~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~---~~Ig~~~~i~~~~~IG~~~~I~~~~~I~ 140 (273)
T 3fs8_A 71 LIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNN---VKIGTLSDIQHHVYIGNYVNIHSNVFVG 140 (273)
T ss_dssp EEECTTCEECTTCEEESSCEECTTCEECSSCEECSSCEECSS---CEECTTCEECSSCEECSSCEECTTCEEC
T ss_pred eEECCCCEECCCCEEeCCCEECCCCEECCceEECCCCEECCC---CEECccceeCCceEECCceEECCCCEEC
Confidence 5666666666666663 4444433333333222 2333333 4444444442 44444444444444444
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.5e-10 Score=111.73 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=33.0
Q ss_pred CCCCCCCCCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEe
Q 009817 383 PKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELK 438 (524)
Q Consensus 383 ~~~~i~~~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~ 438 (524)
|.+.+.+.+.++++++|. .|.|. ++.||++|+|+ ++.|. ++.||++|.|+++|.|.
T Consensus 10 p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~ 69 (262)
T 2qia_A 10 PTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIG 69 (262)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEE
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEEC
Confidence 333333344444444442 24443 57777777776 46664 57788888888888775
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=118.24 Aligned_cols=87 Identities=8% Similarity=0.133 Sum_probs=52.3
Q ss_pred ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhH--Hhhh-------cCCccceEeCCCcEEee
Q 009817 406 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLL-------AEGKVPIGVGRNTKIRN 475 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~-------~~g~~~~~Ig~~~~I~~ 475 (524)
++.|+++|.|+ ++.|.+|+||++++|+++++|+++++.++..+...+.+ .+.+ .+-+..+.|++++.|.+
T Consensus 83 ~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~ 162 (334)
T 2pig_A 83 PCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNH 162 (334)
T ss_dssp SCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEES
T ss_pred eeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEec
Confidence 35566666666 45556666677777766666666665555443333221 1111 01112277888888888
Q ss_pred eEECCCCEECCCcEEeC
Q 009817 476 CIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~ 492 (524)
|+|+++|.|+.++.|.+
T Consensus 163 s~I~~g~~I~~~a~I~~ 179 (334)
T 2pig_A 163 SRIVHQVQLYGNATITH 179 (334)
T ss_dssp CEEETTCEECTTCEEES
T ss_pred cEEcCCCEEcCCeEEeC
Confidence 88888888888888864
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=120.47 Aligned_cols=100 Identities=22% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceE
Q 009817 390 SPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIG 466 (524)
Q Consensus 390 ~~~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~ 466 (524)
.+.+++++.|+ ++.|. +++||++|.|+ ++.|.+++||+++.|++++.|+++++..+ +.
T Consensus 262 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~-------------------~~ 322 (401)
T 2ggo_A 262 PVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAED-------------------VN 322 (401)
T ss_dssp SEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTT-------------------CE
T ss_pred CeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCC-------------------cE
Confidence 33444445552 35554 68899999999 68888999999999999999988888777 55
Q ss_pred eCCCcEEe-------------------------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCC
Q 009817 467 VGRNTKIR-------------------------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDG 521 (524)
Q Consensus 467 Ig~~~~I~-------------------------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~g 521 (524)
||.++.|. .++||++|.||.+++|..+ +.||++++|++|
T Consensus 323 Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~g----------------v~Ig~~~vi~~g 386 (401)
T 2ggo_A 323 FGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPG----------------VKIGAYARIYPG 386 (401)
T ss_dssp ECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECTT----------------CEECTTCEECTT
T ss_pred ECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcCC----------------cEECCCcEECCC
Confidence 66666554 5777777777777777765 356666666666
Q ss_pred ccc
Q 009817 522 MVI 524 (524)
Q Consensus 522 tvI 524 (524)
++|
T Consensus 387 svv 389 (401)
T 2ggo_A 387 AVV 389 (401)
T ss_dssp CEE
T ss_pred CeE
Confidence 553
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=122.40 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=43.2
Q ss_pred ccCCCeEEc-Ceeee-ceEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccc
Q 009817 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQT 450 (524)
Q Consensus 392 ~i~p~~~i~-~~~i~-~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~ 450 (524)
.+++.+.|. .+.|. ++.||++|+|+ ++.|.++.||++|.|+ ++.|.++.+..+..++.
T Consensus 276 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~ 336 (468)
T 1hm9_A 276 EIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGP 336 (468)
T ss_dssp EECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECS
T ss_pred EECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECC
Confidence 344444443 25553 68899999998 6888999999999999 99999988888744433
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.4e-10 Score=106.50 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=70.0
Q ss_pred CCCCCCCCCCccCCCeEEc-Ceeee-----ceEECCCCEEC-ceEEec---------------eEEcCCcEECCCCEEec
Q 009817 382 DPKTPFYTSPRFLPPTKID-NCRIK-----DAIISHGCFLR-ECTVEH---------------SIVGERSRLDYGVELKD 439 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~-~~~i~-----~siIg~g~~I~-~~~i~~---------------siIg~~~~Ig~~~~I~~ 439 (524)
++.+.+.....+++.+.|. ++.|. +++||++|.|+ ++.|.. ++||++|.|+.+|.|.+
T Consensus 49 ~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~ 128 (213)
T 3kwd_A 49 HSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHG 128 (213)
T ss_dssp CTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEE
T ss_pred CCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcC
Confidence 3344444444555555553 35553 47899999998 577763 89999999999999987
Q ss_pred eEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeC
Q 009817 440 TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 440 s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~ 492 (524)
.+..+++ +.||.++.|.+++||++|.||.+++|.+
T Consensus 129 ~v~Ig~~------------------v~IG~~a~I~~~~Ig~~~~Igags~V~~ 163 (213)
T 3kwd_A 129 PAYIGDG------------------CFIGFRSTVFNARVGAGCVVMMHVLIQD 163 (213)
T ss_dssp EEEECTT------------------CEECTTCEEEEEEECTTCEECSSCEEES
T ss_pred CCEECCC------------------CEECCCCEEeCcEECCCCEEcCCCEECC
Confidence 4444443 9999999999999999999999999953
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-10 Score=112.11 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=5.7
Q ss_pred EEcCCCEeCCCcc
Q 009817 511 IIMEKATIEDGMV 523 (524)
Q Consensus 511 vv~~~~~i~~gtv 523 (524)
.||++++|++|++
T Consensus 181 ~Ig~~~vvg~~s~ 193 (283)
T 4eqy_A 181 RIGAHSMLGGASA 193 (283)
T ss_dssp EECTTCEECTTCE
T ss_pred EECCCcEECCCCe
Confidence 3444444444443
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.9e-10 Score=114.69 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=31.8
Q ss_pred eEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 476 CIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.|++|++||++++|.+.. ...++.++.+|..+. +.||++++|+++++|
T Consensus 263 v~I~~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V 319 (374)
T 2iu8_A 263 VQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGV 319 (374)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEE
T ss_pred cccCCccEECCCCEEccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCcee
Confidence 5667777888888877765 345566666666553 366666666666653
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=117.69 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=26.7
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCcEEEcCCCEeCCCc
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGM 522 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~~gt 522 (524)
+.||++++|. ++.|+.+++||+++.|.+.. ...++.++..|..+ ++|.++++|++++
T Consensus 245 t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~-a~V~~~v~Ig~~~ 305 (372)
T 3pmo_A 245 TLIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGG-VGLVGHIEICDNV 305 (372)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTT-CEECSSCEECSSE
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCeEEeCC-CEECCCCEECCCC
Confidence 4444444443 34455555555555555543 23455555555544 3333334444443
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-10 Score=113.74 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=13.9
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||++|+|. +|+|.++++||++++|..+
T Consensus 178 v~IGd~v~IG~~a~I~~gv~IG~~avIgag 207 (276)
T 3gos_A 178 TIIEDNCFVGARSEVVEGVIVEEGSVISMG 207 (276)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 4555555552 4444444444444444433
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-10 Score=115.07 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=19.3
Q ss_pred ceEECCCCEEC-ceEE-eceEEcCCcEECCCCEE
Q 009817 406 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVEL 437 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i-~~siIg~~~~Ig~~~~I 437 (524)
++.||++|.|. ++.| .+++||++|.|++++.|
T Consensus 145 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I 178 (341)
T 3eh0_A 145 NSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV 178 (341)
T ss_dssp TCEECTTCEECSSCEECTTCEECSSCEECTTCEE
T ss_pred CCEECCCcEECCCcEECCCCEECCccEEcCCcEE
Confidence 46666666665 4444 45666666666666666
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=99.03 E-value=9.8e-10 Score=108.54 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=6.7
Q ss_pred EEcCCCEeCCCcc
Q 009817 511 IIMEKATIEDGMV 523 (524)
Q Consensus 511 vv~~~~~i~~gtv 523 (524)
.||+++.|++|++
T Consensus 164 ~Ig~~~~ig~~s~ 176 (262)
T 2qia_A 164 IIGAHVMVGGCSG 176 (262)
T ss_dssp EECTTCEECSSCE
T ss_pred EECCCCEEccCCE
Confidence 4555555555544
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-10 Score=114.25 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=77.3
Q ss_pred CCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCC----------ccccchhh
Q 009817 387 FYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGA----------DYYQTESE 453 (524)
Q Consensus 387 i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~----------~~~~~~~~ 453 (524)
+...+.+++++.|. +|.|.++.|+++|.|+ ++.|++++|+.+|.|+.++++. ++.++.+ .++...+.
T Consensus 80 I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~ 159 (334)
T 2pig_A 80 ITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRAT 159 (334)
T ss_dssp EESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCE
T ss_pred EeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCE
Confidence 33334444444443 3677889999999999 7999999999999999999885 6666554 33333333
Q ss_pred H-HhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 454 I-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 454 ~-~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+ .++++++ +.|+.++.|.+++|++++.|++++.+.+.
T Consensus 160 I~~s~I~~g---~~I~~~a~I~~svI~~~a~I~~~a~V~~~ 197 (334)
T 2pig_A 160 VNHSRIVHQ---VQLYGNATITHAFIEHRAEVFDFALIEGD 197 (334)
T ss_dssp EESCEEETT---CEECTTCEEESEEECTTCEECTTCEEECC
T ss_pred EeccEEcCC---CEEcCCeEEeCcEEcCCCEECCCcEECCc
Confidence 3 5678888 89999999999999999999999988765
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=107.52 Aligned_cols=33 Identities=6% Similarity=0.139 Sum_probs=24.6
Q ss_pred ceEECCCCEEC-ceEE--------------eceEEcCCcEECCCCEEe
Q 009817 406 DAIISHGCFLR-ECTV--------------EHSIVGERSRLDYGVELK 438 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i--------------~~siIg~~~~Ig~~~~I~ 438 (524)
++.||++|.|+ ++.| .+++||++|.|+++|.|.
T Consensus 48 ~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~ 95 (259)
T 3hsq_A 48 GSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIH 95 (259)
T ss_dssp TEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEE
T ss_pred CcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEEC
Confidence 37777777777 4555 457888888888888887
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-10 Score=121.29 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=67.6
Q ss_pred eeeeceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhH-HhhhcCCccceEeCCCcEEe----
Q 009817 402 CRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIR---- 474 (524)
Q Consensus 402 ~~i~~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~-~~~~~~g~~~~~Ig~~~~I~---- 474 (524)
+.|.+++||++|.|+ ++.|. +++||+++.||+++.|+++.+..+..++...++ .+.++++ +.||.++.+.
T Consensus 316 ~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~---~~ig~~~~i~~~~~ 392 (459)
T 4fce_A 316 TVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAG---VNIGAGTITCNYDG 392 (459)
T ss_dssp CEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEEEEECTTCEEEEEEEEEEEEECTT---CEECTTCEEECBCS
T ss_pred cEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEeeeEEcCCCEECCceEECCeEECCC---CEECCCCEEecccc
Confidence 444556778888887 56665 688888888888888888777777655554433 2344444 4555555443
Q ss_pred ----eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEe
Q 009817 475 ----NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATI 518 (524)
Q Consensus 475 ----~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i 518 (524)
.++||++|.||.+++| ..|..|++| ++||.++.|
T Consensus 393 ~~~~~v~Ig~~~~IG~~~~I---------~~gv~Ig~~-~~igagsvV 430 (459)
T 4fce_A 393 ANKFKTIIGDDVFVGSDTQL---------VAPVTVANG-ATIGAGTTV 430 (459)
T ss_dssp SCBCCEEECTTCEECTTCEE---------ESSEEECTT-CEECTTCEE
T ss_pred ccCCCCEECCCeEEcCCCEE---------cCCcEECCC-CEECCCCEE
Confidence 2455555555555444 678889888 777887776
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.5e-10 Score=109.10 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCCCCccCCCeEEcC-eeee-ceEECCCCEECceEEeceEEcCCcEECCCCEEec
Q 009817 387 FYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD 439 (524)
Q Consensus 387 i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~ 439 (524)
+++++.+.|+++|++ +.|. ++.|+++|.|++ ++.||++|.|+++|.|.+
T Consensus 5 i~~~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~----~v~Ig~~~~I~~~~~I~~ 55 (273)
T 3fs8_A 5 ISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRD----NVHIKKGSFIGARSILGE 55 (273)
T ss_dssp ECTTCEECTTCEECSSEEECTTCEECTTCEECS----SEEECTTCEECTTCEEEE
T ss_pred cCCCeEECCCcEECCCCEECCCcEECCCCEECC----CCEECCCcEECCCcEeCC
Confidence 344444555555532 3332 344555555542 355555555555555543
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=105.88 Aligned_cols=21 Identities=10% Similarity=-0.008 Sum_probs=10.9
Q ss_pred ccCCCCCCCCCCccCCCeEEc
Q 009817 380 FYDPKTPFYTSPRFLPPTKID 400 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~ 400 (524)
+..+.+.+++.+.+.++++|+
T Consensus 87 ~~~~~~~I~~~a~I~~~v~Ig 107 (240)
T 3r8y_A 87 LKGIKARIEPGAIIRDHVEIG 107 (240)
T ss_dssp CTTCSSEECTTCEEBSSCEEC
T ss_pred ccCCCCEECCCCEECCCcEEC
Confidence 334445555555555555553
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=107.20 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=10.6
Q ss_pred ceEEcCCcEECCCCEEe
Q 009817 422 HSIVGERSRLDYGVELK 438 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~ 438 (524)
+++||+++.|+++|.|.
T Consensus 85 ~~~IG~~~~Ig~~~~I~ 101 (265)
T 4e6u_A 85 WLEIGNNNLIREHCSLH 101 (265)
T ss_dssp EEEECSSCEECTTCEEE
T ss_pred eEEECCCeEECCceEEC
Confidence 55666666666666664
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-09 Score=106.01 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=37.5
Q ss_pred ccCCCCCCCCCCccCCCeEEc-------C------eeee-ceEECCCCEEC-ceEE--------------eceEEcCCcE
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-------N------CRIK-DAIISHGCFLR-ECTV--------------EHSIVGERSR 430 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-------~------~~i~-~siIg~g~~I~-~~~i--------------~~siIg~~~~ 430 (524)
++++.+.+...+.++|+++|. + +.|. ++.||++|.|+ ++.| .+++||++|.
T Consensus 12 ~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~ 91 (266)
T 3r0s_A 12 VIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNAT 91 (266)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCE
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCE
Confidence 345555555555555544442 1 3333 57777777777 5666 4788888888
Q ss_pred ECCCCEEec
Q 009817 431 LDYGVELKD 439 (524)
Q Consensus 431 Ig~~~~I~~ 439 (524)
|+++|.|..
T Consensus 92 Ig~~~~I~~ 100 (266)
T 3r0s_A 92 IREFATINS 100 (266)
T ss_dssp ECTTCEEEC
T ss_pred ECCceEecC
Confidence 888888864
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.7e-10 Score=111.17 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=51.5
Q ss_pred hhhcCceEEEEec--CeEeecCCHHHHHHHHHHhhccC----C--CccccCC----------------CCCCCCCCccCC
Q 009817 340 AIMEHDVQAYIFR--DYWEDIGTIKSFYEANMALTKES----P--AFHFYDP----------------KTPFYTSPRFLP 395 (524)
Q Consensus 340 li~~~~V~~y~~~--~~w~dIgt~~d~~~An~~l~~~~----~--~~~~~~~----------------~~~i~~~~~i~p 395 (524)
+++++++++.... |.|..-.-++........+.... . .+.+++. ...+.+.+.+.+
T Consensus 61 ~l~~g~~r~a~~~~~g~w~~~~w~kk~ill~f~l~~~~~~~~g~~~~~~~dk~p~kf~~~~~~~~~~~g~~I~p~a~I~~ 140 (304)
T 3eg4_A 61 LLDRGEVRVAEKQADGNWHVNQWLKKAVLLSFRLNPMEVIKGGPGQSSWWDKVPSKFDGWTANEFEKAGFRAVPNCIVRH 140 (304)
T ss_dssp HHHTTSSCSEEECTTSCEEECHHHHHHHHHHHHHSCCEEEECSGGGCEEEESCCBTTTTCCHHHHHHHCCEECTTCEEBT
T ss_pred HhcCCCeEEEEEcCCCceEEeeeeeeeeeeeeeeccccccccCcccchheecccchhcccChhHhccCCcEEcCCEEECC
Confidence 5566778777764 77987666666555555544321 1 0122221 122333344444
Q ss_pred CeEEc-CeeeeceEECCCCEEC-ceEEec-eEEcCCcEECCCCEEeceEEe
Q 009817 396 PTKID-NCRIKDAIISHGCFLR-ECTVEH-SIVGERSRLDYGVELKDTVML 443 (524)
Q Consensus 396 ~~~i~-~~~i~~siIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I~~s~i~ 443 (524)
+++|+ ++.|.+.+|+.+|.|+ +|.|.+ ++||.+|.||++|.|...+.+
T Consensus 141 ~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i 191 (304)
T 3eg4_A 141 SAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGI 191 (304)
T ss_dssp TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEE
T ss_pred CcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEE
Confidence 44443 2444443444455555 344432 566666666666666543333
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-09 Score=110.67 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=19.4
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSG 508 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g 508 (524)
+.||++++|. ++.|+.|++||+++.|.+.. ...++.++..|..+
T Consensus 228 t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~ 275 (357)
T 4e79_A 228 TILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGA 275 (357)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred ccccCCcccCCCcccCCCeEECCCCEECCCCEECCCcEECCCCEECcC
Confidence 3444444443 24444555555555554443 22344444444433
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=101.36 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=18.3
Q ss_pred eEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 476 CIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
++|+++|.||.+++|..+ ++||++++|++|++|
T Consensus 103 ~~Ig~~v~IG~~~~I~~g----------------~~Ig~~~~IgagsvV 135 (192)
T 3mqg_A 103 TIVRQGATLGANCTVVCG----------------ATIGRYAFVGAGAVV 135 (192)
T ss_dssp EEECTTCEECTTCEECTT----------------CEECTTCEECTTCEE
T ss_pred cEECCCcEECCCCEECCC----------------CEECCCCEEcCCCEE
Confidence 455555555555555544 356666666666553
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-09 Score=108.89 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=49.6
Q ss_pred CCCCCCCCCCccCCCeEEcCeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH------
Q 009817 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI------ 454 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~------ 454 (524)
++...|++++.+.|.++|++ ++.|+++|+|++ ++.||++|.|++++.|. ++.|..++.+...+.+
T Consensus 5 ~~~~~I~p~A~I~~~a~Ig~----~v~Ig~~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g 76 (305)
T 3t57_A 5 DSEVLIHPSAVVHPNAVIGK----GVSVGPYCTIGS----SVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPG 76 (305)
T ss_dssp ----CBCTTSEECTTSEECT----TCEECTTCEECT----TEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSE
T ss_pred CCCCeECCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCC
Confidence 44556666777776666653 445555555542 24555555555555553 3333333222222222
Q ss_pred HhhhcCCccceEeCCCcEEe--------------eeEECCCCEECCCcEEeC
Q 009817 455 ASLLAEGKVPIGVGRNTKIR--------------NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 455 ~~~~~~g~~~~~Ig~~~~I~--------------~~iI~~~~~Ig~~~~i~~ 492 (524)
.+.++++ +.|++++.|. ..+||+++.|+++++|..
T Consensus 77 ~~~IG~~---~~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~ 125 (305)
T 3t57_A 77 YTFIGCN---NIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHR 125 (305)
T ss_dssp EEEECSS---CEECTTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEEC
T ss_pred ceEECCc---eEECCccEeCccccccceecCCCceEEECCCcccCceEEEee
Confidence 2455555 5666666662 255666666666666654
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-09 Score=105.50 Aligned_cols=38 Identities=8% Similarity=0.124 Sum_probs=26.6
Q ss_pred eeee-ceEECCCCEEC-ceEE-------------eceEEcCCcEECCCCEEec
Q 009817 402 CRIK-DAIISHGCFLR-ECTV-------------EHSIVGERSRLDYGVELKD 439 (524)
Q Consensus 402 ~~i~-~siIg~g~~I~-~~~i-------------~~siIg~~~~Ig~~~~I~~ 439 (524)
+.|. ++.||++|.|+ ++.| .+++||+++.|+++|.|..
T Consensus 44 ~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~ 96 (270)
T 1j2z_A 44 VTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINP 96 (270)
T ss_dssp CEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECC
T ss_pred cEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcC
Confidence 4444 57777777777 4665 4677888888888887763
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.4e-09 Score=100.44 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=42.9
Q ss_pred eecCCHHHHHHHHHHhhccCCCc-cccCCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcE
Q 009817 356 EDIGTIKSFYEANMALTKESPAF-HFYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSR 430 (524)
Q Consensus 356 ~dIgt~~d~~~An~~l~~~~~~~-~~~~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~ 430 (524)
.-|++++...+....+.+....+ .++++.+.+...+.+++++.|.. +.|. ++.||++|.|+ ++.|. +++||++|.
T Consensus 76 iAIg~~~~R~~i~~~l~~~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ 155 (220)
T 4ea9_A 76 VAIGDNRLRQKLGRKARDHGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACH 155 (220)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EecCCHHHHHHHHHHHHhcCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCE
Confidence 34667665555555555433222 34455555555555566555532 4442 45666666665 44443 345555555
Q ss_pred ECCCCEEec
Q 009817 431 LDYGVELKD 439 (524)
Q Consensus 431 Ig~~~~I~~ 439 (524)
|++++.|.+
T Consensus 156 i~~~~~i~~ 164 (220)
T 4ea9_A 156 LGPASALAG 164 (220)
T ss_dssp ECTTCEECS
T ss_pred ECCCCEEcC
Confidence 555555543
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-09 Score=98.02 Aligned_cols=94 Identities=12% Similarity=0.142 Sum_probs=72.2
Q ss_pred cCCCCCCCCCCccCCCeEEc-Ceeeec----eEECCCCEEC-ceEEe-----ceEEcCCcEECCCCEEeceEEeCCcccc
Q 009817 381 YDPKTPFYTSPRFLPPTKID-NCRIKD----AIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADYYQ 449 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~-~~~i~~----siIg~g~~I~-~~~i~-----~siIg~~~~Ig~~~~I~~s~i~~~~~~~ 449 (524)
+++.+.+...+.+++++.|. ++.|.. +.||++|.|+ ++.|. +++||+++.|++++.|+++.+.++
T Consensus 19 I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~---- 94 (173)
T 1v3w_A 19 VDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNY---- 94 (173)
T ss_dssp ECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSS----
T ss_pred ECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCC----
Confidence 34444444444555666663 355543 8999999998 67776 599999999999999998877776
Q ss_pred chhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 450 TESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 450 ~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.|. ++.||+++.||.+++|...
T Consensus 95 ---------------~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~ 124 (173)
T 1v3w_A 95 ---------------VIIGISSVILDGAKIGDHVIIGAGAVVPPN 124 (173)
T ss_dssp ---------------EEECTTCEECTTCEECSSEEECTTCEECTT
T ss_pred ---------------CEECCCCEEeCCCEECCCCEECCCCEECCC
Confidence 8999999885 6999999999999988864
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-09 Score=105.29 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=14.3
Q ss_pred eEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEe
Q 009817 407 AIISHGCFLR-ECTVE---HSIVGERSRLDYGVELK 438 (524)
Q Consensus 407 siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~ 438 (524)
+.||++|.|. ++.+. +++||++|.|++++.|.
T Consensus 86 v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~ 121 (252)
T 3jqy_B 86 VRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVV 121 (252)
T ss_dssp EEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEE
T ss_pred EEECCCCEECCceEEccCCEEEECCCCEECCCcEEE
Confidence 3444444444 23331 34455555555555444
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-09 Score=114.71 Aligned_cols=116 Identities=25% Similarity=0.362 Sum_probs=73.0
Q ss_pred CCccCCCeEEc-CeeeeceEECCCCEEC-ceEEeceEEcCCcEECCCCEEe-ceEEeCCccccchhhH-HhhhcCCc-c-
Q 009817 390 SPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAEGK-V- 463 (524)
Q Consensus 390 ~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~-~s~i~~~~~~~~~~~~-~~~~~~g~-~- 463 (524)
.+.++.++.|+ ++.|.+++||++|.|+ ++.|.+++||.+|.|++++.|. ++.+..+..++..+++ .+.++++. +
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~ 362 (456)
T 2v0h_A 283 NVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKKSTVGKGSKVN 362 (456)
T ss_dssp EEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEESCEECTTCEEE
T ss_pred CcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEeccEECCCCEec
Confidence 34444455553 3666788899999998 6888888899999998888887 5556656666655544 22222221 0
Q ss_pred ------ceEeCCCcEEe--------------eeEECCCCEECCCcEEeCCCCCCCCCCceEEecC
Q 009817 464 ------PIGVGRNTKIR--------------NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSG 508 (524)
Q Consensus 464 ------~~~Ig~~~~I~--------------~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g 508 (524)
++.||+++.|. .+.||+||.||.+++|... .++.++..|..|
T Consensus 363 ~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~---v~Ig~~~~ig~~ 424 (456)
T 2v0h_A 363 HLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAP---VKVANGATIGAG 424 (456)
T ss_dssp EEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEES---EEECTTCEECTT
T ss_pred cceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCC---cEECCCCEECCC
Confidence 13444444443 5788888888888888765 133344444444
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-09 Score=105.34 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=18.0
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.|. ++.||++|.||.+++|..+
T Consensus 184 v~IG~~a~I~~gv~IG~~avIgagsvV~~~ 213 (276)
T 3gos_A 184 CFVGARSEVVEGVIVEEGSVISMGVFIGQS 213 (276)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 6666666663 5666666666666666654
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-09 Score=100.26 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=58.1
Q ss_pred cCCCCCCCCCCccCCCeEE------c-Ceeee----ceEECCCCEEC-ceEEe-----------------ceEEcCCcEE
Q 009817 381 YDPKTPFYTSPRFLPPTKI------D-NCRIK----DAIISHGCFLR-ECTVE-----------------HSIVGERSRL 431 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i------~-~~~i~----~siIg~g~~I~-~~~i~-----------------~siIg~~~~I 431 (524)
++|.+.|.+.+.+.++++| + ++.|. ++.||++|.|+ ++.|. .++||+++.|
T Consensus 15 I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i 94 (194)
T 3tv0_A 15 IAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVF 94 (194)
T ss_dssp ECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEE
T ss_pred ECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceE
Confidence 4455555555554444444 3 24442 36788888887 45552 3577777777
Q ss_pred CCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 432 DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 432 g~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.++.+.++.+..+ +.||.++.|. ++.||+||.||.+++|...
T Consensus 95 ~~~~~i~~~~Ig~~-------------------~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~ 138 (194)
T 3tv0_A 95 EVGCYSQAMKMGDN-------------------NVIESKAYVGRNVILTSGCIIGACCNLNTF 138 (194)
T ss_dssp CTTCEECCSEECSS-------------------CEECTTCEECTTEEECSSCEECTTCEECCC
T ss_pred ecceeEeeeeeccc-------------------ceecceeeECCeEEECCCCEECCCCEECCC
Confidence 77777776655555 6677766663 6777777777777777654
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.91 E-value=4e-09 Score=107.11 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=17.3
Q ss_pred eEeCCCcEEee---------eEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIRN---------CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~~~ 493 (524)
+.|+.++.|.+ ++||++|.||.+++|..+
T Consensus 199 v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~g 236 (316)
T 3tk8_A 199 VHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEG 236 (316)
T ss_dssp CEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTT
T ss_pred CEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCC
Confidence 55555555543 666666666666666544
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.2e-09 Score=96.80 Aligned_cols=96 Identities=18% Similarity=0.338 Sum_probs=61.2
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEece---EEeCCccccchhhHHhhhcCCccceEeCCCcEEe------ee
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDT---VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR------NC 476 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s---~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~------~~ 476 (524)
++.|+++|.|.+ ++.||++|.|+++|.|.+. +.++.+ +.|++++.|. +|
T Consensus 39 ~~~I~~~~~i~~----~v~IG~~~~I~~~~~I~~~~~~i~IG~~------------------~~I~~~~~I~~~~~~g~~ 96 (191)
T 3ixc_A 39 TAFIAGNARIIG----DVCIGKNASIWYGTVLRGDVDKIEVGEG------------------TNIQDNTVVHTDSMHGDT 96 (191)
T ss_dssp TSEECTTCEEEE----EEEECTTCEECTTCEEEEEEEEEEECTT------------------CEECTTCEECC----CCE
T ss_pred CCEECCCCEEeC----CcEECCCCEECCCCEEecCCCCeEECCC------------------CEECCCCEEeecCCcCCe
Confidence 455555555542 4788899999998888743 244433 8888888887 78
Q ss_pred EECCCCEECCCcEEeCCC--CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 477 IIDKNVKIGKDVVIVNKD--EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 477 iI~~~~~Ig~~~~i~~~~--e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+||+++.||.++.|.+.. +...+..+..|..| ++||+++.|++|++|
T Consensus 97 ~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~gsvV 145 (191)
T 3ixc_A 97 VIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDR-AVMEEGSMLAAGSLL 145 (191)
T ss_dssp EECTTCEECTTCEECSCEECTTCEECTTCEECTT-CEECTTCEECTTCEE
T ss_pred EECCCCEECCCCEEECCEECCCCEECCCCEEeCC-eEECCCCEECCCCEE
Confidence 888888888888887642 22222233333333 355666666666553
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.3e-09 Score=97.21 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=72.8
Q ss_pred cCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEE------------eceEEcCCcEECCCCEEeceEE
Q 009817 381 YDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV------------EHSIVGERSRLDYGVELKDTVM 442 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i------------~~siIg~~~~Ig~~~~I~~s~i 442 (524)
+++...+.....+++++.|. ++.|. ++.||++|.|+ ++.| .+++||++|.|+.+|.|.++.|
T Consensus 24 I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~I 103 (187)
T 3r3r_A 24 IDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTI 103 (187)
T ss_dssp ECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEE
T ss_pred ECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEE
Confidence 34444444445556666664 35554 24899999998 6778 6799999999999999999777
Q ss_pred eCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 443 LGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
..+ +.||.++.| .++.|+++|.||.+++|.+.
T Consensus 104 g~~-------------------~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~ 136 (187)
T 3r3r_A 104 GNR-------------------VLVGMGSIVLDGAIIEDDVMIGAGSLVPQH 136 (187)
T ss_dssp CSS-------------------EEECTTCEECTTCEECSSEEECTTCEECTT
T ss_pred CCC-------------------CEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 776 899999999 57999999999999999864
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.5e-09 Score=96.17 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=68.9
Q ss_pred CCCCCCCCCCccCCCeEEc-Ceeeec----eEECCCCEEC-ceEEe-----ceEEcCCcEECCCCEEeceEEeCCccccc
Q 009817 382 DPKTPFYTSPRFLPPTKID-NCRIKD----AIISHGCFLR-ECTVE-----HSIVGERSRLDYGVELKDTVMLGADYYQT 450 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~-~~~i~~----siIg~g~~I~-~~~i~-----~siIg~~~~Ig~~~~I~~s~i~~~~~~~~ 450 (524)
++.+.+.....+++++.|. ++.|.. ++||++|.|+ ++.|. +++||+++.|+.++.|.++.+.++
T Consensus 22 ~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~----- 96 (173)
T 1xhd_A 22 ADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKD----- 96 (173)
T ss_dssp CTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTT-----
T ss_pred CCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCC-----
Confidence 3333333444555566664 355543 7899999998 67887 799999999999999988777766
Q ss_pred hhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 451 ESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 451 ~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.|. ++.||+++.||.++++...
T Consensus 97 --------------~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~ 126 (173)
T 1xhd_A 97 --------------ALIGMGSIILDGAEIGEGAFIGAGSLVSQG 126 (173)
T ss_dssp --------------CEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred --------------CEEcCCCEEcCCCEECCCCEECCCCEECCC
Confidence 8888888885 6888888888888888753
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.88 E-value=4e-09 Score=106.64 Aligned_cols=93 Identities=19% Similarity=0.317 Sum_probs=68.1
Q ss_pred CCCCCCCCCCccCCCeEEcCeee-eceEECCCCEEC-ceEEec-eEEcCCcEECCCCEEec---------eEEeCCcccc
Q 009817 382 DPKTPFYTSPRFLPPTKIDNCRI-KDAIISHGCFLR-ECTVEH-SIVGERSRLDYGVELKD---------TVMLGADYYQ 449 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~~~~i-~~siIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I~~---------s~i~~~~~~~ 449 (524)
.|...+...+.+++++.|....| .++.||++|.|. ++.|.+ +.||++|.|+.++.|.+ +.|.++
T Consensus 133 ~p~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~---- 208 (304)
T 3eg4_A 133 VPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDN---- 208 (304)
T ss_dssp CTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTT----
T ss_pred cCCEEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCC----
Confidence 45556667777888888766544 368999999998 477755 99999999999999987 333333
Q ss_pred chhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 450 TESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 450 ~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.++.| .+|+||++|.||.+++|..+
T Consensus 209 ---------------v~IG~~a~I~~gv~IG~~avIgagsvV~~g 238 (304)
T 3eg4_A 209 ---------------CFIGARSEVVEGCIVREGSVLGMGVFIGKS 238 (304)
T ss_dssp ---------------CEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred ---------------CEECCCCEEcCCcEECCCcEECCCCEEcCC
Confidence 677777765 46777777777777777654
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=95.34 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=13.1
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||++|+|. +|+|.++++||++++|...
T Consensus 135 v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~g 164 (205)
T 3vbi_A 135 VILKKHVIIGAHSIIFPNVVIGEGVAVGAM 164 (205)
T ss_dssp EEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred EEECCCCEECCCCEEcCCCEECCCCEEcCC
Confidence 4444444442 3444444444444444443
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=93.81 Aligned_cols=94 Identities=11% Similarity=0.145 Sum_probs=69.9
Q ss_pred cCCCCCCCCCCccCCCeEEc-Ceeee----ceEECCCCEEC-ceEEece------------EEcCCcEECCCCEEeceEE
Q 009817 381 YDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEHS------------IVGERSRLDYGVELKDTVM 442 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~-~~~i~----~siIg~g~~I~-~~~i~~s------------iIg~~~~Ig~~~~I~~s~i 442 (524)
+++...+.....+++++.|. ++.|. .+.||++|.|+ ++.|..+ +||++|.|+.+|.|.++.|
T Consensus 28 I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~I 107 (189)
T 3r1w_A 28 VDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTI 107 (189)
T ss_dssp ECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEE
T ss_pred ECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEE
Confidence 33444444445555566663 35553 35899999999 5777544 9999999999999998666
Q ss_pred eCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEEeCC
Q 009817 443 LGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~ 493 (524)
..+ +.||.++.| .++.||++|.||.+++|..+
T Consensus 108 g~~-------------------~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g 140 (189)
T 3r1w_A 108 GNR-------------------VLIGMKSMIMDGAIVEDEVIVAAGATVSPG 140 (189)
T ss_dssp CSS-------------------EEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred CCC-------------------cEECCCCEEcCCCEECCCCEEccCCEECCC
Confidence 665 899999988 47888999999999888864
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-08 Score=102.48 Aligned_cols=15 Identities=20% Similarity=0.291 Sum_probs=8.9
Q ss_pred eEECCCCEECCCcEE
Q 009817 476 CIIDKNVKIGKDVVI 490 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i 490 (524)
++||+||.||.|++|
T Consensus 257 V~IGdnv~IGAnAtI 271 (347)
T 3r5d_A 257 ISVGEGCLIGANAGI 271 (347)
T ss_dssp CEECTTCEECTTCEE
T ss_pred eEECCCCEECCCCEE
Confidence 555555555555555
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-08 Score=92.96 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=63.2
Q ss_pred CCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEec---eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCC-
Q 009817 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG- 461 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~---siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g- 461 (524)
+...+.|.||+++.- -.++.||++|+|+ +|.|.+ +.||++|.|+++|.|..+.- .+.. . ....+
T Consensus 58 ig~~~~I~~~~~~~~--g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h----~~~~--~---~~~~~~ 126 (203)
T 1krr_A 58 VGENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGH----PVHH--E---LRKNGE 126 (203)
T ss_dssp CCSSCEECSCEEESC--STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEEC----CSST--T---TCTTCC
T ss_pred cCCCcEEcCCeEEEe--CCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCc----ccch--h---hcccCc
Confidence 444566777765421 0267888888888 566654 79999999999999875421 0000 0 00111
Q ss_pred --ccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 462 --KVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 462 --~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
.-|+.||++|+|. +|+|.++++||++++|..++
T Consensus 127 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgags 162 (203)
T 1krr_A 127 MYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGS 162 (203)
T ss_dssp BEECCEEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred eeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCC
Confidence 1248888888885 78888888888888887764
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=95.15 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=59.1
Q ss_pred CCCCCccCCCeEEcCeee-eceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhH--Hhhhc
Q 009817 387 FYTSPRFLPPTKIDNCRI-KDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLA 459 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i-~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~ 459 (524)
+...+.+.||..+. + .++.||++|+|+ ++.|. ..+||++|.||++|.|..+.-... .... ...++
T Consensus 59 ig~~~~I~~p~~~~---ig~~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~-----~~~~~~~~~~~ 130 (195)
T 3nz2_A 59 LGHKSCVQPPFHCE---FGKTIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLD-----YRRRQAWETIC 130 (195)
T ss_dssp ECTTCEECSSEEES---CSTTEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSS-----GGGTTTCCCEE
T ss_pred cCCCcEEcCCeEEE---eCCCeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcc-----cccccccceec
Confidence 34445566654432 1 156777777777 56553 348999999999999976542111 0111 01111
Q ss_pred CCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 460 EGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 460 ~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
. |+.||++|+|. +|+|.++++||++++|..++
T Consensus 131 ~---~v~IG~~v~IG~~~~I~~gv~IG~~~vIgags 163 (195)
T 3nz2_A 131 K---PIVIEDDVWIGGNVVINQGVTIGARSVVAANS 163 (195)
T ss_dssp C---CEEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred C---CeEECCCCEEcCCCEECCCCEECCCCEECCCC
Confidence 1 47888888884 67777777777777777664
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-08 Score=93.89 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=58.6
Q ss_pred CCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhHHh--hhcCC
Q 009817 388 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIAS--LLAEG 461 (524)
Q Consensus 388 ~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~--~~~~g 461 (524)
...+.+.||+++.-. .++.||++|+|+ +|.|. .++||++|.||++|.|..+.-... ...... ..+
T Consensus 58 g~~~~i~~~~~~~~g--~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~-----~~~~~~~~~~~-- 128 (199)
T 3ftt_A 58 TDNVSISIPFDTDYG--WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLN-----FHHRNEGFEKA-- 128 (199)
T ss_dssp CSSEEECSSEEESSS--TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSS-----HHHHHTTEEEE--
T ss_pred CCCeEEeCCEEEEec--CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCc-----cccccccceec--
Confidence 345566666666310 256666666666 45553 359999999999999965431111 111100 011
Q ss_pred ccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 462 KVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 462 ~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
-|+.||++|+|. +|+|.++++||++++|..++
T Consensus 129 -~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgags 161 (199)
T 3ftt_A 129 -GPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGS 161 (199)
T ss_dssp -CCEEECSSEEECTTCEECTTCEECTTCEECTTC
T ss_pred -CCeEEcCCcEEcCCCEECCCCEECCCCEECCCC
Confidence 137788888884 77777777777777777664
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=105.82 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=20.8
Q ss_pred EEEEecCeEeecCC--HHHHHHHHHHhhc
Q 009817 347 QAYIFRDYWEDIGT--IKSFYEANMALTK 373 (524)
Q Consensus 347 ~~y~~~~~w~dIgt--~~d~~~An~~l~~ 373 (524)
+++....+|.|.|. |++|......+..
T Consensus 164 ~g~l~~~~Wt~~G~~~~~~f~~~~~~l~~ 192 (387)
T 2rij_A 164 FGLLSNVAWSDDKPIELEYLRANEMRLKM 192 (387)
T ss_dssp HHHSCCEEEETTEEECHHHHHHHHHHHHH
T ss_pred hccCceeeeccCcccCHHHHHHHHHHHHh
Confidence 33344568999999 7999999988874
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.9e-08 Score=96.37 Aligned_cols=82 Identities=6% Similarity=0.077 Sum_probs=62.1
Q ss_pred CCccCCCeEEc-Ceeee-----ceEECCCCEEC-ceEEe------------------------ceEEcCCcEECCCCEEe
Q 009817 390 SPRFLPPTKID-NCRIK-----DAIISHGCFLR-ECTVE------------------------HSIVGERSRLDYGVELK 438 (524)
Q Consensus 390 ~~~i~p~~~i~-~~~i~-----~siIg~g~~I~-~~~i~------------------------~siIg~~~~Ig~~~~I~ 438 (524)
.+.+++.+.|. +|.|. ++.||++|.|+ ++.|. +++||++|.|+.+|.|.
T Consensus 77 ~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~ 156 (247)
T 1qre_A 77 EVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVH 156 (247)
T ss_dssp SEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEE
T ss_pred CcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEc
Confidence 34444555553 24443 23778888887 56664 38999999999999998
Q ss_pred c-eEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEE
Q 009817 439 D-TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 439 ~-s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i 490 (524)
+ +.+..+ +.||.++.|.++.||++|.||.+++|
T Consensus 157 ~~~~Ig~~-------------------v~IG~~a~I~~v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 157 GPAAVGDD-------------------TFIGMQAFVFKSKVGNNCVLEPRSAA 190 (247)
T ss_dssp EEEEECTT-------------------CEECTTCEEEEEEECTTCEECTTCEE
T ss_pred CCcEECCC-------------------CEECCCCEEeceEECCCCEECCCCEE
Confidence 8 444444 99999999977999999999999999
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-08 Score=94.99 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=40.3
Q ss_pred eEECCCCEECceEE-----eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECC
Q 009817 407 AIISHGCFLRECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDK 480 (524)
Q Consensus 407 siIg~g~~I~~~~i-----~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~ 480 (524)
+.||++|.|+.+.+ .+++||++|.|+++|.|.++- ....+.......... .-|+.||++++|. +|+|.+
T Consensus 80 ~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~--~h~~~~~~~~~~~~~---~~~v~Igd~v~IG~~~~I~~ 154 (215)
T 2wlg_A 80 LQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTD--MHPIYSLENGERINH---GKDVIIGNHVWLGRNVTILK 154 (215)
T ss_dssp EEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCC--SSCEEETTTCBBCCC---CCCEEECTTCEECTTCEECT
T ss_pred EEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCC--CcccccccccccccC---CCCeEECCCcEECCCCEECC
Confidence 67777777775444 356677777777776666430 000000000000000 1135666666663 555555
Q ss_pred CCEECCCcEEeCC
Q 009817 481 NVKIGKDVVIVNK 493 (524)
Q Consensus 481 ~~~Ig~~~~i~~~ 493 (524)
+++||++++|...
T Consensus 155 gv~Ig~~~vIgag 167 (215)
T 2wlg_A 155 GVCIPNNVVVGSH 167 (215)
T ss_dssp TCEECSSCEECTT
T ss_pred CCEECCCCEECCC
Confidence 5555555555554
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-08 Score=99.26 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=13.3
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.|+.| ++.||+||.||.|++|...
T Consensus 240 v~IGanAtI-gVtIGd~~iIGAGSVVtkd 267 (332)
T 3fsy_A 240 CLLGANSGL-GISLGDDCVVEAGLYVTAG 267 (332)
T ss_dssp CEECTTCEE-CSCBCSSCEECTTCEECTT
T ss_pred CEECCCCEE-eeEECCCCEECCCCEECCC
Confidence 444444444 4444444555444444443
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-08 Score=93.85 Aligned_cols=95 Identities=19% Similarity=0.315 Sum_probs=55.9
Q ss_pred CCccCCCeEEcCeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhHH--hhhcCCcc
Q 009817 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIA--SLLAEGKV 463 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~--~~~~~g~~ 463 (524)
.+.+.||+++.-. .++.||++|+|+ +|.|. .+.||++|.|+++|.|.++..... ..... ..++ -
T Consensus 64 ~~~I~~~~~~~~g--~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~-----~~~~~~~~~~~---~ 133 (190)
T 3hjj_A 64 KAQINPDFRCDYG--YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLH-----PVERNSGKEYG---K 133 (190)
T ss_dssp CCEECSSCEESSS--TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSS-----HHHHTSSEEEE---C
T ss_pred CcEECCCEEEEeC--CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCc-----hhhcccccccc---C
Confidence 4556666665200 145666666666 44443 468999999999999976542211 11110 0111 1
Q ss_pred ceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 464 ~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
|+.||++|+|. +|+|.++++||++++|..++
T Consensus 134 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgags 165 (190)
T 3hjj_A 134 PVKIGNNVWVGGGAIINPGVSIGDNAVIASGA 165 (190)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 37777777774 67777777777777776663
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=105.78 Aligned_cols=70 Identities=19% Similarity=0.411 Sum_probs=55.8
Q ss_pred eEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCC
Q 009817 418 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEAD 497 (524)
Q Consensus 418 ~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~ 497 (524)
+.+.+|.||++|.| +++.|.+++|..+ |.||+++.|++|+|++++.||.++.|.++
T Consensus 320 ~~i~~~~ig~~~~I-~~~~i~~~~ig~~-------------------~~I~~~~~i~~~~i~~~~~i~~~~~i~~~---- 375 (420)
T 3brk_X 320 GSAVSSVVSGDCII-SGAALNRSLLFTG-------------------VRANSYSRLENAVVLPSVKIGRHAQLSNV---- 375 (420)
T ss_dssp CEEESCEECSSCEE-ESCEEESCEECTT-------------------CEECTTCEEEEEEECTTCEECTTCEEEEE----
T ss_pred cEecCCEECCCCEE-cCCEEeCcEEcCC-------------------CEECCCCEEcceEEcCCCEECCCCEEece----
Confidence 45557888888888 7888888777777 88999999999999999999999888763
Q ss_pred CCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 498 RPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 498 ~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+||+++.|++|++|
T Consensus 376 -------------~ig~~~~i~~~~~i 389 (420)
T 3brk_X 376 -------------VIDHGVVIPEGLIV 389 (420)
T ss_dssp -------------EECTTCEECTTCEE
T ss_pred -------------EECCCCEECCCCEE
Confidence 67777777776654
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5e-08 Score=93.63 Aligned_cols=29 Identities=7% Similarity=0.211 Sum_probs=16.4
Q ss_pred eEeCCCcEEee-eEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIRN-CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~ 493 (524)
+.|+.++.|.+ ++||++|.||.+++|...
T Consensus 154 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~ 183 (220)
T 4ea9_A 154 CHLGPASALAGGVSVGERAFLGVGARVIPG 183 (220)
T ss_dssp CEECTTCEECSSCEECTTCEECTTCEECTT
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEcCC
Confidence 55555555543 666666666666666554
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.5e-08 Score=92.29 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=13.1
Q ss_pred eEeecCCHHHHHHHHHHhhcc
Q 009817 354 YWEDIGTIKSFYEANMALTKE 374 (524)
Q Consensus 354 ~w~dIgt~~d~~~An~~l~~~ 374 (524)
...-++++...+.....+.+.
T Consensus 50 ~~iaig~~~~r~~~~~~l~~~ 70 (194)
T 3bfp_A 50 FFIAIGNNEIRKKIYQKISEN 70 (194)
T ss_dssp EEECCCCHHHHHHHHHHHHTT
T ss_pred EEEEeCCHHHHHHHHHHHHHc
Confidence 356688887666665555543
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-08 Score=90.39 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=59.9
Q ss_pred CCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEEec---eEEcCCcEECCCCEEeceEEeCCccccchhhHH--hhhcC
Q 009817 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEH---SIVGERSRLDYGVELKDTVMLGADYYQTESEIA--SLLAE 460 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~---siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~--~~~~~ 460 (524)
+...+.+.||+++.-. .++.||++|+|+ +|.+.+ ..||++|.|+++|.|....-. +. ..... ..++
T Consensus 59 ig~~~~I~~~~~~~~g--~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~----~~-~~~~~~~~~~~- 130 (188)
T 3srt_A 59 VGKQINVEQNIRCDYG--YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHP----ID-AQLRNSGIEYG- 130 (188)
T ss_dssp CCSCEEECSCEEESSS--TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECC----SS-HHHHHTTEEEE-
T ss_pred cCCCCEEcCCEEEEeC--CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCcc----Cc-hhhccccceEC-
Confidence 4455666777766310 256777777777 455543 489999999999999643210 00 11110 0111
Q ss_pred CccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 461 GKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 461 g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
-|+.||++|+|. +|+|.++++||++++|..+.
T Consensus 131 --~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgags 163 (188)
T 3srt_A 131 --SPVKIGDNVWIGGGVIITPGITIGDNVVIGAGS 163 (188)
T ss_dssp --CCEEECSSCEECTTCEECTTCEECSSEEECTTC
T ss_pred --CCcEECCCcEEcCCCEECCCcEECCCCEECCCC
Confidence 247888888885 67777777777777777664
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.69 E-value=8.3e-07 Score=94.82 Aligned_cols=345 Identities=14% Similarity=0.172 Sum_probs=183.8
Q ss_pred CCCCceeEEEEeCCCCCcccCCccCCCccceeec-CcchhHHHHHHHHHhc----CC-CeEEEEeccC-chhHHHHHHHh
Q 009817 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GI-NKIFVLTQFN-SASLNRHIART 162 (524)
Q Consensus 90 ~~~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg-Gk~pLId~~l~~l~~s----Gi-~~I~Ivt~~~-~~~l~~hl~~~ 162 (524)
...+++..|+||||.||||+ ...||.++||. |+ +++|+.++.+... |. =-.+|.|.+. .+...+++.
T Consensus 123 ~~l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgk-tflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~-- 196 (528)
T 3r3i_A 123 SVLNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNEN-TFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQ-- 196 (528)
T ss_dssp TTCTTEEEEEECCCBCTTTT---CSSBGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCG--
T ss_pred hhcCceEEEEeCCCCccccC---CCCCccceecCCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHH--
Confidence 34688999999999999995 46899999997 77 9999999998765 42 2456666664 445544443
Q ss_pred hhcCCcccCCCeEEEEccccCCC-----------------CCCCCcc-cCcHHHHHHH--HHHHHhhhcCCCCeEEEEcC
Q 009817 163 YFGNGTNFGDGFVEVLAATQTPG-----------------ESGKNWF-QGTADAVRQF--TWVFEDAKNRNIENVAILCG 222 (524)
Q Consensus 163 y~~~~~~~~~~~V~vl~~~q~~~-----------------e~~~~~~-~Gta~al~~a--~~~i~~~~~~~~e~~Lvl~g 222 (524)
+...|+. .|.++....-|- ...-.|+ -|.++..... ...+++....+.+++.+.+.
T Consensus 197 ---k~~~fg~-~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nv 272 (528)
T 3r3i_A 197 ---KYNHCRV-KIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNI 272 (528)
T ss_dssp ---GGTTSSC-CEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEET
T ss_pred ---hcCccCC-CeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEcc
Confidence 2223332 232221110000 0011222 4665533322 23455555578899999999
Q ss_pred ceecc-cCHHHHHHHHHHc----CCcEEEEEEEcCCCCCCcceEEEECCCCc--EEEEEecCCcccccccccccccccCC
Q 009817 223 DHLYR-MDYMDFIQSHVDR----DADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFS 295 (524)
Q Consensus 223 D~l~~-~dl~~ll~~h~~~----~ad~tl~~~~~~~~~a~~~g~v~id~~g~--V~~~~EKp~~~~~~~~~v~t~~~~l~ 295 (524)
|.+.. .| -.++..+..+ ++++.+-+.+...+. ..-|.+.. .+|+ +.++.|-|+.... + .++.
T Consensus 273 DNlga~vD-p~~Lg~~~~~~~~~~~d~~~kVv~Kt~~d-ek~Gvl~~-~dGk~~vvEyseip~e~~~-~---~~g~---- 341 (528)
T 3r3i_A 273 DNLGATVD-LYILNHLMNPPNGKRCEFVMEVTNKTRAD-VKGGTLTQ-YEGKLRLVEIAQVPKAHVD-E---FKSV---- 341 (528)
T ss_dssp TBTTCCCC-HHHHHHHSSCSSSCCCSEEEEECCCCTTC-CSSCEEEC-SSSSCEEECTTSSCGGGTT-T---SSCS----
T ss_pred CCcccccC-HHHHHHHHhcccccCCcEEEEEeEccccC-CcccEEEE-ECCeEEEEEecCCChhHhh-c---cCCc----
Confidence 99653 34 3356666666 788776555443321 23454432 2444 4444443332110 0 0000
Q ss_pred ccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC--------Cc----------hhhhhHHhhhhcCceEEEEec-CeEe
Q 009817 296 PQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--------ND----------FGSEIIPAAIMEHDVQAYIFR-DYWE 356 (524)
Q Consensus 296 ~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~--------~d----------~~~dii~~li~~~~V~~y~~~-~~w~ 356 (524)
..-.+.++....|+-+.|.++++...... .+ +..++++.. .+..++.+. ..+.
T Consensus 342 -----~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f---~~~~~i~VpR~rF~ 413 (528)
T 3r3i_A 342 -----SKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSF---ENSLGINVPRSRFL 413 (528)
T ss_dssp -----SSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTS---SSCCCEECCGGGCC
T ss_pred -----ccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhc---cCcEEEEEehHHcc
Confidence 01245799999999999998887632110 00 111112111 223344443 2377
Q ss_pred ecCCHHHHHHHHHHhhccCC-CccccCCCCCCCCCCccCCCeEEcC--eeeec--eEECCCCEECceEEeceEEcCCcEE
Q 009817 357 DIGTIKSFYEANMALTKESP-AFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AIISHGCFLRECTVEHSIVGERSRL 431 (524)
Q Consensus 357 dIgt~~d~~~An~~l~~~~~-~~~~~~~~~~i~~~~~i~p~~~i~~--~~i~~--siIg~g~~I~~~~i~~siIg~~~~I 431 (524)
-+-+..|++-...++-.-.. .+. ..|.....+. |-++++. .+|.+ .-+..--.|.++ .+-.|--+++.
T Consensus 414 PvKn~sdLll~~Sdly~l~~g~l~-~~~~r~~~~~----P~v~L~~~~~~v~~f~~rf~~iP~l~~~--~~LtV~Gdv~f 486 (528)
T 3r3i_A 414 PVKTTSDLLLVMSNLYSLNAGSLT-MSEKREFPTV----PLVKLGSSFTKVQDYLRRFESIPDMLEL--DHLTVSGDVTF 486 (528)
T ss_dssp BCCSHHHHHHHHSTTSEEETTEEE-CCSSCSSCCC----CEEEECTTSCSHHHHHHHCSSCCEEEEE--EEEEEESEEEC
T ss_pred cccchHHHHHHhcceeEeeCCeEE-ecccccCCCC----CEEEeCcccCcHHHHHHhCCCCCCcccC--CEEEEecceEE
Confidence 88899998876654432111 111 1111111111 2223321 22211 111111112222 24456666999
Q ss_pred CCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEE
Q 009817 432 DYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 484 (524)
Q Consensus 432 g~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~I 484 (524)
|.|+.+++++++-+ +...|+.|.+|+++.|++|--|.+|
T Consensus 487 g~~v~l~G~v~i~~--------------~~g~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 487 GKNVSLKGTVIIIA--------------NHGDRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp CTTCEEEEEEEEEC--------------CTTCEEECCTTCEEEEEEEC-----
T ss_pred CCCcEEEEEEEEEc--------------CCCCceecCCCCEEeccEEeccccc
Confidence 99999999998754 2335699999999999999877766
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-07 Score=93.58 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=52.1
Q ss_pred eceEECCCCEECc-eEE-----eceEEcCCcEECCCCEEec--eEEeCCccccchhhHHhhhcCCccceEeCCCcEEe--
Q 009817 405 KDAIISHGCFLRE-CTV-----EHSIVGERSRLDYGVELKD--TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-- 474 (524)
Q Consensus 405 ~~siIg~g~~I~~-~~i-----~~siIg~~~~Ig~~~~I~~--s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-- 474 (524)
.++.|++++.|+. +.+ ..+.||++|.|++++.|.. .+.++ ++ +.||++++|.
T Consensus 62 ~~v~I~~~~~i~~~~~i~~g~~~~v~Ig~~~~I~~~~~i~~g~~v~IG---------------~~---~~Ig~~~~I~~~ 123 (252)
T 3jqy_B 62 NKLIIEDDVECRWLTVIFRGDNNYVRIHKNSKIKGDIVATKGSKVIIG---------------RR---TTIGAGFEVVTD 123 (252)
T ss_dssp CEEEECTTCEEEEEEEEEESSSCEEEECTTCEEEEEEEEESSCEEEEC---------------TT---CEECTTCEEECS
T ss_pred CEEEEcCCcEEecceEEEeCCCCeEEECCCCEECCceEEccCCEEEEC---------------CC---CEECCCcEEEeC
Confidence 3588999998884 333 3356666666666666631 33333 33 8899999998
Q ss_pred --eeEECCCCEECCCcEEeCCC
Q 009817 475 --NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 475 --~~iI~~~~~Ig~~~~i~~~~ 494 (524)
++.||++|.||.+++|.+.+
T Consensus 124 ~~~~~IG~~~~Ig~~~~I~~~~ 145 (252)
T 3jqy_B 124 KCNVTIGHDCMIARDVILRASD 145 (252)
T ss_dssp SSEEEECTTCEECSSEEEECSC
T ss_pred CCCeEECCCCEEcCCcEEecCC
Confidence 89999999999999999873
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=7.5e-08 Score=96.43 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=13.5
Q ss_pred ceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 464 ~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
|+.||++|.|+ ||.| ++.||++|+|..+
T Consensus 233 ~V~IGDnv~IGanAtI--gVtIGd~~iIGAG 261 (332)
T 3fsy_A 233 VISIGKRCLLGANSGL--GISLGDDCVVEAG 261 (332)
T ss_dssp BCEECTTCEECTTCEE--CSCBCSSCEECTT
T ss_pred ceEECCCCEECCCCEE--eeEECCCCEECCC
Confidence 34555555553 4444 4555555555443
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.1e-08 Score=91.43 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=16.5
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.++.|. ++.||+||.||.++++..
T Consensus 137 v~IG~~~~I~~gv~IG~~~vIgagsvV~~ 165 (199)
T 3ftt_A 137 TWFGGHVAVLPGVTIGEGSVIGAGSVVTK 165 (199)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred cEEcCCCEECCCCEECCCCEECCCCEECc
Confidence 5666666553 566666666666666554
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-07 Score=87.06 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=57.2
Q ss_pred CCccCCCeEEcCeee-eceEECCCCEEC-ceEE---eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccc
Q 009817 390 SPRFLPPTKIDNCRI-KDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVP 464 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i-~~siIg~g~~I~-~~~i---~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~ 464 (524)
.+.+.||.... + .++.||++|+|. ++.+ .++.||++|.|+++|.|..+. ..+.. .+...-+ +-.-|
T Consensus 60 ~~~I~~p~~~~---~g~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~----h~~~~-~~~~~~~-~~~~~ 130 (185)
T 2p2o_A 60 RLFIEPNFRCD---YGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTAT----HPLDP-HERNSGL-EYGKP 130 (185)
T ss_dssp CEEECSCEEES---CSTTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEE----CCSSH-HHHHTCC-BEECC
T ss_pred CcEEeccEEEE---ecCCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCC----CcCCh-hhcccCc-cccCC
Confidence 44555554432 1 256677777776 4555 357999999999999997532 00111 1110000 00124
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.||++|+|. +|+|.++++||++++|..++
T Consensus 131 v~IGd~v~IG~~~~I~~gv~IG~~~vIgags 161 (185)
T 2p2o_A 131 VVIGHNVWIGGRAVINPGVTIGDNAVIASGA 161 (185)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred eEEcCCeEECCCCEECCCCEECCCCEECCCC
Confidence 7888888885 67777777777777777663
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-08 Score=99.36 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=15.8
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
|.||.|+.|. ++.||+||.||.|++|..
T Consensus 230 v~IGaga~Ilggv~IG~~a~IGagsvV~~ 258 (313)
T 3q1x_A 230 VTIGTGAKVLGNIIVGSHVRIGANCWIDR 258 (313)
T ss_dssp CEECTTCEEESSCEECSSEEECTTCEECS
T ss_pred CEECCCCEECCCcEECCCCEECCCCEECC
Confidence 5555555553 455566666666655544
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.2e-08 Score=90.18 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=11.3
Q ss_pred eeEECCCCEECCCcEEeCC
Q 009817 475 NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 475 ~~iI~~~~~Ig~~~~i~~~ 493 (524)
.++||+||.||.+++|..+
T Consensus 132 ~v~IG~~v~IG~~~~I~~g 150 (188)
T 3srt_A 132 PVKIGDNVWIGGGVIITPG 150 (188)
T ss_dssp CEEECSSCEECTTCEECTT
T ss_pred CcEECCCcEEcCCCEECCC
Confidence 4556666666666666544
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-08 Score=93.72 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=20.9
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.||++|+|. +|+|.++++||++++|..++
T Consensus 120 v~IG~~v~IG~~a~I~~gv~IG~gavIgags 150 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEA 150 (220)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred eEECCCcEECCCCEEeCCCEECCCCEEcCCC
Confidence 6777777774 67777777777777776663
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-07 Score=100.81 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=50.5
Q ss_pred eEECCCCEEC-ceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEee--------eE
Q 009817 407 AIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN--------CI 477 (524)
Q Consensus 407 siIg~g~~I~-~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~--------~i 477 (524)
++|+++|.|+ .+.+.+|+||++|.|++.+.|.++.|..+ |.||.+|.+-| ++
T Consensus 353 ~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~-------------------v~IG~g~i~~n~dg~~~~~t~ 413 (501)
T 3st8_A 353 TALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEY-------------------SNIGASSVFVNYDGTSKRRTT 413 (501)
T ss_dssp CEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSS-------------------CEECTTCEEECBCSSSBCCEE
T ss_pred cEEccccccCCeEEEccceecCCcEEeccceecCceEcCC-------------------CEECCCEEEEcccCCcccCCE
Confidence 4444444444 34445555555555555555555555444 67777777643 77
Q ss_pred ECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCc
Q 009817 478 IDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGM 522 (524)
Q Consensus 478 I~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gt 522 (524)
||+||.||.++.|... .++.++.+|..| .+|.++ ||+|+
T Consensus 414 IGd~~~iG~~~~l~~~---v~Ig~~~~i~ag-s~v~~d--vp~~~ 452 (501)
T 3st8_A 414 VGSHVRTGSDTMFVAP---VTIGDGAYTGAG-TVVRED--VPPGA 452 (501)
T ss_dssp ECTTCEECTTCEEESS---EEECTTCEECTT-CEECSC--BCTTC
T ss_pred ECCCcEECCCCEEcCC---cEECCCCEECCC-CEECcc--cCCCC
Confidence 7777777777777764 234444444444 233443 56654
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=88.05 Aligned_cols=97 Identities=21% Similarity=0.312 Sum_probs=57.5
Q ss_pred CCccCCCeEEcCeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccce
Q 009817 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI 465 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~ 465 (524)
.+.+.||.++.- -.++.||++|+|+ ++.|. .+.||++|.|+++|.|..+. ..+.. .+...-+ +-.-|+
T Consensus 58 ~~~I~~~~~~~~--g~~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~----h~~~~-~~~~~~~-~~~~~v 129 (182)
T 1ocx_A 58 EAYIEPTFRCDY--GYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTAT----HPIDP-VARNSGA-ELGKPV 129 (182)
T ss_dssp SEEECSCEEESS--STTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEE----CCSSH-HHHTTTC-BEECCE
T ss_pred CEEEeCCEEEEe--CCCEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCC----CccCh-hhcccCc-cccCCe
Confidence 355566654320 0256667777776 45553 47899999999999996532 00111 1110000 001248
Q ss_pred EeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 466 GVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 466 ~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
.||++++|. +|+|.++++||++++|..++
T Consensus 130 ~IG~~v~Ig~~a~I~~gv~IG~~~vIgags 159 (182)
T 1ocx_A 130 TIGNNVWIGGRAVINPGVTIGDNVVVASGA 159 (182)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEeCCeEECCCCEECCCcEECCCCEECCCC
Confidence 888888885 78888888888888887663
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-07 Score=89.55 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=50.8
Q ss_pred eEECCCCEECc-eEEec----eEEcCCcEECCCCEE----eceEEeCCccccchhhHHhhhcCCccceEeCCCcEEee--
Q 009817 407 AIISHGCFLRE-CTVEH----SIVGERSRLDYGVEL----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-- 475 (524)
Q Consensus 407 siIg~g~~I~~-~~i~~----siIg~~~~Ig~~~~I----~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~-- 475 (524)
+.||++|.|+. +.+.. +.||++|.|++++.+ .++.|..+ +.||+++.|.+
T Consensus 59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~-------------------~~Ig~~~~I~~~~ 119 (215)
T 2wlg_A 59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKD-------------------CMLAHGYEIRNTD 119 (215)
T ss_dssp EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTT-------------------CEECTTEEEESCC
T ss_pred EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCC-------------------CEEcCCEEEECCC
Confidence 88999999984 66653 888888888874444 23333333 88888888875
Q ss_pred ------------------eEECCCCEECCCcEEeCC
Q 009817 476 ------------------CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ------------------~iI~~~~~Ig~~~~i~~~ 493 (524)
++||++|.||.+++|..+
T Consensus 120 ~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~g 155 (215)
T 2wlg_A 120 MHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKG 155 (215)
T ss_dssp SSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTT
T ss_pred CcccccccccccccCCCCeEECCCcEECCCCEECCC
Confidence 488999999999988876
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-05 Score=84.44 Aligned_cols=344 Identities=13% Similarity=0.164 Sum_probs=191.1
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceee-cCcchhHHHHHHHHHhc----CC-CeEEEEeccC-chhHHHHHHH-hhh
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV-AGCYRLIDIPMSNCINS----GI-NKIFVLTQFN-SASLNRHIAR-TYF 164 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpI-gGk~pLId~~l~~l~~s----Gi-~~I~Ivt~~~-~~~l~~hl~~-~y~ 164 (524)
+++..|.||||.||||+ ..-||.++|| .|+ +++|..++++... |. =-.+|.|.++ .+...+++.+ .||
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgk-sflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~F 150 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQ-TFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTL 150 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCccc
Confidence 57899999999999995 4579999999 566 9999999888753 33 2567777765 5567667643 235
Q ss_pred cCC---c-ccCCCeEEEEccccC-----CCCCCCCcc-cCcHHHHHHH--HHHHHhhhcCCCCeEEEEcCceecccCHHH
Q 009817 165 GNG---T-NFGDGFVEVLAATQT-----PGESGKNWF-QGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLYRMDYMD 232 (524)
Q Consensus 165 ~~~---~-~~~~~~V~vl~~~q~-----~~e~~~~~~-~Gta~al~~a--~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ 232 (524)
+.. + -|.-+.+..+..+.. +....-.|. -|.++-.... ...+++....+.+++.+.+.|.+...-=-.
T Consensus 151 gl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~ 230 (484)
T 3gue_A 151 YEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR 230 (484)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH
T ss_pred CCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH
Confidence 421 0 111111222211110 000011222 4666644333 234555555788999999999976543356
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCCcceE-EEE--------CCCCc--EEEEEecCCcccccccccccccccCCcccccc
Q 009817 233 FIQSHVDRDADITISCAAVGESRASDYGL-VKI--------DNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 301 (524)
Q Consensus 233 ll~~h~~~~ad~tl~~~~~~~~~a~~~g~-v~i--------d~~g~--V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~ 301 (524)
++..+.++++++.+-+.+...+. ..-|+ +.. ..+|+ +.++.|-|.... ++.. | ..
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~d-ekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~-~~f~-~----------~~- 296 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTESD-KKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDE-DSFQ-N----------IA- 296 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTTC-CSSEEEEEEC--------CCCEEEEEEGGGSCGGGH-HHHT-C----------TT-
T ss_pred HHHHHHhcCCCEEEEEEECCCCC-CceeEEEEEccccccccCCCCCEEEEEeccCCHHHH-hhhc-C----------CC-
Confidence 78888889999888777665432 23553 333 12454 334444333211 0000 0 00
Q ss_pred CCcceeeeEEEEeHHHHHHHHHhhC-----CC----------C---------CchhhhhHHhhhhcCceEEEEec-CeEe
Q 009817 302 CPYVASMGVYVFKKDVLFKLLRWRY-----PT----------S---------NDFGSEIIPAAIMEHDVQAYIFR-DYWE 356 (524)
Q Consensus 302 ~~~l~~~GIYvf~~~vL~~ll~~~~-----~~----------~---------~d~~~dii~~li~~~~V~~y~~~-~~w~ 356 (524)
...+.+++-..++-..+.++++... +. . +-|..|+++.+ .+..++.+. ..+.
T Consensus 297 g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R~rF~ 373 (484)
T 3gue_A 297 KHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPRERFA 373 (484)
T ss_dssp TSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCGGGCC
T ss_pred CceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEEChhhcc
Confidence 1134488888899888877877631 10 0 11223333322 355666654 3467
Q ss_pred ecCCHHHHHHHHHHhhccCCCcccc-CCCCCCCCCCccCCCeEEcC---eeeec--eEECCCC-EECceEEeceEEcCCc
Q 009817 357 DIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKIDN---CRIKD--AIISHGC-FLRECTVEHSIVGERS 429 (524)
Q Consensus 357 dIgt~~d~~~An~~l~~~~~~~~~~-~~~~~i~~~~~i~p~~~i~~---~~i~~--siIg~g~-~I~~~~i~~siIg~~~ 429 (524)
-+-+..|++....++..-.....+. .+.. .. ..|-++++. .+|.+ ..+.+|. .|.++ .+-.|--++
T Consensus 374 PvKn~sdLl~~~Sdly~l~~~~~l~~~~~~-~~----~~P~v~L~~~~~~~v~~f~~rf~~giPsl~~~--~~L~V~Gdv 446 (484)
T 3gue_A 374 PVKTCSDLLALRSDAYQVTEDQRLVLCEER-NG----KPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQC--TSLTVRGLV 446 (484)
T ss_dssp CCSSHHHHHHHHSTTEEECTTSCEEECGGG-TT----CCCEEEECTTTSSSHHHHHHHHTTCCCBCTTE--EEEEEESSE
T ss_pred ccccchHHHHHhhhceeccCCceEEecccc-CC----CCCeEEECchhcCcHHHHHHhcCCCCCChhhC--CEEEEecce
Confidence 7888888887766554322111110 1111 01 112234432 22221 2222322 22322 244566669
Q ss_pred EECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEE
Q 009817 430 RLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 478 (524)
Q Consensus 430 ~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI 478 (524)
+.|.++.++++++..+ +...|+.|.+|+++.|++|
T Consensus 447 ~fg~~v~l~G~v~i~~--------------~~g~~~~ip~g~~l~~~~~ 481 (484)
T 3gue_A 447 EFGADVSVRGNVVIKN--------------LKEEPLIIGSGRVLDNEVV 481 (484)
T ss_dssp EECTTCEEEEEEEEEE--------------CSSSCEEECTTCEEESCEE
T ss_pred EECCCcEEEEEEEEEc--------------CCCCeeecCCCCEecceec
Confidence 9999999999998755 2234589999999998876
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-07 Score=89.31 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=16.5
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVEL 437 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I 437 (524)
+++|+++|+|++ +++||.+|.|+++|.|
T Consensus 54 ~~vI~~~~~Ig~----~v~IG~~~~Ig~~v~i 81 (220)
T 4hur_A 54 DQVLYHYEVIGD----KLIIGRFCSIGPGTTF 81 (220)
T ss_dssp GGEESCCTTTCC----CEEECSSCEECTTCEE
T ss_pred CeEEeCCCEECC----CeEECCCCEECCCCEE
Confidence 344555555542 3577777777777765
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-07 Score=99.89 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=53.9
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCC----
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN---- 481 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~---- 481 (524)
++.|++++.|.++.|.+++||++|.|+. +.|.+++|..+ +.||+++.|.++++..+
T Consensus 314 ~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~-------------------~~Ig~~~~I~~~~~~~~~~~~ 373 (451)
T 1yp2_A 314 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLR-------------------SCISEGAIIEDSLLMGADYYE 373 (451)
T ss_dssp CCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEESCEECTT-------------------CEECTTCEEESCEECCCSSCC
T ss_pred CCccCCCeEEcceEEeCeEECCCCEEcc-eEEeccEECCC-------------------CEECCCCEEcCceEECCCCcc
Confidence 4666777777667777889999999985 88888777777 89999999988777666
Q ss_pred ---------------CEECCCcEEeCC
Q 009817 482 ---------------VKIGKDVVIVNK 493 (524)
Q Consensus 482 ---------------~~Ig~~~~i~~~ 493 (524)
+.||.++.|.+.
T Consensus 374 ~~~~~~~~~~~g~~~~~Ig~~~~i~~~ 400 (451)
T 1yp2_A 374 TDADRKLLAAKGSVPIGIGKNCHIKRA 400 (451)
T ss_dssp CHHHHHHHHTTTCCCSEECTTCEEESE
T ss_pred cccccccccccCceeEEECCCCEEecc
Confidence 888888877654
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-07 Score=94.48 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=40.8
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECC
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 486 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~ 486 (524)
+.||++|.|.......++||++|.|++||.|.+.. .........+|++ |.||.|+.| ++.||+||.||.
T Consensus 215 a~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~-------~~~~~~~V~IGdn---v~IGAnAtI-GVtIGd~~iIGA 283 (347)
T 3r5d_A 215 AGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTL-------SGGGNIVISVGEG---CLIGANAGI-GIPLGDRNIVEA 283 (347)
T ss_dssp EEESSSEEECSEECTTCEECTTEEECTTCEECC-------------CCCCEECTT---CEECTTCEE-CSCBCTTCEECT
T ss_pred CEECCCcEEcCCceEeEEECCCCEECCCCEEcccc-------CCCCccceEECCC---CEECCCCEE-eeEECCCCEECC
Confidence 44555555542111236777777777777775430 0000001222233 677777777 677777777777
Q ss_pred CcEEeCC
Q 009817 487 DVVIVNK 493 (524)
Q Consensus 487 ~~~i~~~ 493 (524)
+++|...
T Consensus 284 GSVVtkd 290 (347)
T 3r5d_A 284 GLYITAG 290 (347)
T ss_dssp TCEECTT
T ss_pred CCEECCC
Confidence 7777665
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=92.01 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=20.2
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
|.||.|+.|. ++.||+||.||.+++|...
T Consensus 223 v~IGaga~Il~gv~IG~~a~IGagsvV~kd 252 (287)
T 3mc4_A 223 VLIGAGAKILGNIQVGQCSKIAAGSVVLKS 252 (287)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECSC
T ss_pred CEECCCCEECCCcEECCCCEECCCCEEccc
Confidence 6677777664 5777777777777777653
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.46 E-value=6e-07 Score=89.59 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=43.0
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEE
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~I 484 (524)
++.||++|+|... .+++||+++.||++|.|...+.+++.. ...++-++.||+||+|. +|.|..+++|
T Consensus 170 ~a~IG~~v~I~hg--~gvvIG~~~~IGd~v~I~~gvtIg~~~----------~~~~~r~~~IGd~v~IGaga~Il~gv~I 237 (287)
T 3mc4_A 170 AARLGSGLFLDHA--TGLVVGETAVVEDNVSILHGVTLGGTG----------KSSGDRHPKIRQGVLIGAGAKILGNIQV 237 (287)
T ss_dssp TCEECSSCEEESC--TTCEECTTCEECSSCEEETTCEEEC---------------CCCSCEECTTCEECTTCEEESSCEE
T ss_pred CCEECCCeEEccC--CCeEECCCeEECCCCEEcCCCEEcCCc----------ccCCCcCCEECCCCEECCCCEECCCcEE
Confidence 3455555555411 135556666666666555433333310 11223347788888885 7778778888
Q ss_pred CCCcEEeCCC
Q 009817 485 GKDVVIVNKD 494 (524)
Q Consensus 485 g~~~~i~~~~ 494 (524)
|++++|..+.
T Consensus 238 G~~a~IGags 247 (287)
T 3mc4_A 238 GQCSKIAAGS 247 (287)
T ss_dssp CTTCEECTTC
T ss_pred CCCCEECCCC
Confidence 8888887764
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.7e-07 Score=85.59 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=19.1
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.++.|. ++.||+||.||.++++..
T Consensus 138 v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 166 (203)
T 1krr_A 138 VWIGSHVVINPGVTIGDNSVIGAGSIVTK 166 (203)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred eEECCCCEEeCCeEECCCCEECCCCEECC
Confidence 6677777764 577777777777776664
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.3e-07 Score=89.60 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=17.7
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
|.||.|+.|. ++.||+||.||.|++|..
T Consensus 258 V~IGaga~Il~gv~IGd~a~IGagsvV~~ 286 (310)
T 3f1x_A 258 VIVYSNATILGRVTIGKGATVGGNIWVTE 286 (310)
T ss_dssp CEECTTCEEESSCEECTTCEECSSCEECS
T ss_pred cEEcCCCEECCCcEECCCCEECCCCEECC
Confidence 5666666664 566666666666666654
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.8e-07 Score=92.23 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=10.3
Q ss_pred eEECCCCEECCCcEEeCC
Q 009817 476 CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (524)
++||+||.||.+++|.+.
T Consensus 224 ~~IGd~v~IGaga~Ilgg 241 (313)
T 3q1x_A 224 PTVGDYVTIGTGAKVLGN 241 (313)
T ss_dssp CEECSSCEECTTCEEESS
T ss_pred CEECCCCEECCCCEECCC
Confidence 456666666666655543
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=85.81 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=24.8
Q ss_pred CCeEE--EEcCceecccCHHHHHHHHHHcC
Q 009817 214 IENVA--ILCGDHLYRMDYMDFIQSHVDRD 241 (524)
Q Consensus 214 ~e~~L--vl~gD~l~~~dl~~ll~~h~~~~ 241 (524)
.|++| ++++|+|...+|.+++..|...+
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 38999 99999999999999999988754
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.35 E-value=5.9e-07 Score=89.77 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=25.0
Q ss_pred CCeEE--EEcCceecccCHHHHHHHHHHcC
Q 009817 214 IENVA--ILCGDHLYRMDYMDFIQSHVDRD 241 (524)
Q Consensus 214 ~e~~L--vl~gD~l~~~dl~~ll~~h~~~~ 241 (524)
.|++| ++++|+|...+|.+++..|...+
T Consensus 39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 39 CEPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 48999 99999999999999999988764
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=81.49 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.++.|. ++.||+||.||.+++|..
T Consensus 137 v~IG~~~~I~~gv~IG~~~vIgagsvV~~ 165 (185)
T 2p2o_A 137 VWIGGRAVINPGVTIGDNAVIASGAVVTK 165 (185)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECC
Confidence 6777777775 677777777777777764
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.2e-07 Score=89.63 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=19.3
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+|++|. +|.|..+++||++++|..+
T Consensus 252 ~~IGd~V~IGaga~Il~gv~IGd~a~IGag 281 (310)
T 3f1x_A 252 PILEDDVIVYSNATILGRVTIGKGATVGGN 281 (310)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECSS
T ss_pred CEECCCcEEcCCCEECCCcEECCCCEECCC
Confidence 4677777664 6666666666666666655
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.2e-07 Score=88.28 Aligned_cols=60 Identities=28% Similarity=0.413 Sum_probs=32.2
Q ss_pred eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 423 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 423 siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
++||++|+|+.+|.|.++.. .. ......++++ +.||.|+.|. ++.||++|.||.++++..
T Consensus 164 ~~IG~~v~I~~gvtig~~~~------~~-~~~~~~IGd~---v~IGaga~Il~gv~IG~~a~IGagsvV~~ 224 (267)
T 1ssq_A 164 SVIENDVSILQGVTLGGTGK------ES-GDRHPKVREG---VMIGAGAKILGNIEVGKYAKIGANSVVLN 224 (267)
T ss_dssp CEECTTCEECTTCEEECCSS------SC-SSCSCEECTT---CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred eEECCCCEEcCCcEECCCcc------cC-CCCCeEECCC---eEEcCCCEEeCCcEECCCCEECCCCEEcc
Confidence 55555566666655554310 00 0011233344 6666666663 577777777777777764
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-06 Score=81.23 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=17.6
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.++.|. ++.||+||.||.+++|..
T Consensus 135 v~Ig~~a~I~~gv~IG~~~vIgagsvV~~ 163 (182)
T 1ocx_A 135 VWIGGRAVINPGVTIGDNVVVASGAVVTK 163 (182)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred eEECCCCEECCCcEECCCCEECCCCEECC
Confidence 6666666663 566666666666666654
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.3e-06 Score=84.33 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=19.3
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.|+.|. ++.||++|.||.|++|...
T Consensus 216 v~IGaga~Ilggv~IG~~a~IGagsvV~~d 245 (289)
T 1t3d_A 216 VMIGAGAKILGNIEVGRGAKIGAGSVVLQP 245 (289)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECSC
T ss_pred eEECCCCEEecCcEECCCCEECCCCEEccC
Confidence 6666666663 5677777777777776643
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-06 Score=82.60 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=21.0
Q ss_pred ceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 464 ~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
++.||++|+|. +|+|.++++||++++|..++
T Consensus 111 ~v~IG~~v~IG~~a~I~~gv~IG~~~iIgags 142 (212)
T 3eev_A 111 DTIIGHDVWIGTEAMIMPGVKIGHGAIIASRS 142 (212)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCC
Confidence 36777777774 67777777777777776663
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=88.55 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=14.6
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||.|+. .++.||++|.||.+++|...
T Consensus 297 v~IGagAv-~GV~IGdgavIGAGsVVt~d 324 (387)
T 2rij_A 297 CLLGANSV-TGIPLGDNCIVDAGIAVLEG 324 (387)
T ss_dssp CEECTTCE-ECSCBCTTCEECTTCEECTT
T ss_pred CEECCCCc-CCcEECCCCEECCCCEECCC
Confidence 44444444 45555555555555555544
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=7.1e-06 Score=76.88 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=13.2
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEe
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 491 (524)
+.||.++.|. ++.||+||.||.+++|.
T Consensus 141 v~IG~~~~I~~gv~IG~~~vIgagsvV~ 168 (190)
T 3hjj_A 141 VWVGGGAIINPGVSIGDNAVIASGAVVT 168 (190)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred CEECCCCEECCCCEECCCCEECCCCEEC
Confidence 4445555443 44455555555554444
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=9.2e-06 Score=76.52 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=16.5
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~ 492 (524)
+.||.|+.|. ++.||+||.||.++++..
T Consensus 139 v~IG~~~~I~~gv~IG~~~vIgagsvV~~ 167 (195)
T 3nz2_A 139 VWIGGNVVINQGVTIGARSVVAANSVVNQ 167 (195)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred CEEcCCCEECCCCEECCCCEECCCCEEcc
Confidence 5666666663 566666666666666553
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.7e-06 Score=80.85 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=17.2
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||++++|. +|+|.++++||++++|..+
T Consensus 119 v~Igd~v~IG~~a~I~~gv~IG~~~~Igag 148 (219)
T 4e8l_A 119 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAE 148 (219)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred cEECCCeEECCCCEEcCCCEECCCCEECCC
Confidence 5666666664 5555556666666555554
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=4.8e-06 Score=79.43 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=10.8
Q ss_pred ceEEcCCcEECCCCEE
Q 009817 422 HSIVGERSRLDYGVEL 437 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I 437 (524)
++.||++|.|+++|.|
T Consensus 58 ~v~IG~~~~I~~~v~i 73 (212)
T 3eev_A 58 KLVIGSFCSIGSGAVF 73 (212)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CcEECCCCEECCCCEE
Confidence 4567777777777765
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.8e-06 Score=79.47 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=17.6
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.|. +|+|.++++||++++|..+
T Consensus 114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igag 143 (209)
T 1mr7_A 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAAN 143 (209)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTT
T ss_pred cEECCCCEEcCCCEEcCCCEECCCCEEcCC
Confidence 5666666664 5666666666666666555
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-05 Score=75.97 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=14.6
Q ss_pred eeeEECCCCEECCCcEEeCC
Q 009817 474 RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~~ 493 (524)
++++||++|.||.+++|..+
T Consensus 117 g~v~Igd~v~IG~~a~I~~g 136 (219)
T 4e8l_A 117 GDIEIGNDVWIGRDVTIMPG 136 (219)
T ss_dssp CCEEECSSCEECTTCEECTT
T ss_pred CCcEECCCeEECCCCEEcCC
Confidence 46777777777777777765
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.1e-05 Score=73.19 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=20.5
Q ss_pred ceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 464 ~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
|+.||++|+|. +|+|.++++||++++|..++
T Consensus 110 ~v~IG~~v~IG~~a~I~~gv~Ig~~~~Igags 141 (212)
T 1xat_A 110 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRA 141 (212)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred CeEECCCCEECCCCEEeCCCEECCCCEECCCC
Confidence 46777777774 56666666666666666653
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0026 Score=69.20 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=123.1
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeec---CcchhHHHHHHHHHhc-CCC-eEEEEeccC-chhHHHHHHHhhhcC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-GIN-KIFVLTQFN-SASLNRHIARTYFGN 166 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIg---Gk~pLId~~l~~l~~s-Gi~-~I~Ivt~~~-~~~l~~hl~~~y~~~ 166 (524)
+++..|+||||.||||+ ...||.++|++ |+ +++++.++++.+. |.. -.+|.|.++ .+...+++.+ | +.
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-f-gl 186 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-L-QL 186 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-T-TC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-h-CC
Confidence 57899999999999986 46899999997 88 9999999999864 532 557777765 5667777754 3 32
Q ss_pred CcccCCCeEEEEccccCCC---CCC---------CCcc-cCcHHHHHHHHH--------------------HHHhhhcCC
Q 009817 167 GTNFGDGFVEVLAATQTPG---ESG---------KNWF-QGTADAVRQFTW--------------------VFEDAKNRN 213 (524)
Q Consensus 167 ~~~~~~~~V~vl~~~q~~~---e~~---------~~~~-~Gta~al~~a~~--------------------~i~~~~~~~ 213 (524)
. ...|.++....-+- +.+ -.|. -|.++....... .+++....+
T Consensus 187 ~----~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~G 262 (630)
T 3ogz_A 187 E----VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAG 262 (630)
T ss_dssp C----CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTT
T ss_pred C----cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcC
Confidence 1 11233221100000 000 1122 466664443321 455555578
Q ss_pred CCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEE--CCCCcE-E-EEEecCCcccc-ccc-c
Q 009817 214 IENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGRI-A-QFAEKPSGANL-KAM-Q 286 (524)
Q Consensus 214 ~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~i--d~~g~V-~-~~~EKp~~~~~-~~~-~ 286 (524)
.+++.+.+.|.+. ..---.++-.+.++++++..-+.+... ...-|.+.. ..+|+. . ...|-...+.. ... .
T Consensus 263 ieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~ 340 (630)
T 3ogz_A 263 YESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNK 340 (630)
T ss_dssp CCEEEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC--
T ss_pred CEEEEEEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccC
Confidence 8999999999943 433344678888899998877766433 234555433 345655 2 33432111100 000 0
Q ss_pred cccccccCCccccccCCcceeeeEEEEeHHHHHHHHHh
Q 009817 287 VDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 287 v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
-+...+. .......+..+++.+.|+-+.+.+.++.
T Consensus 341 ~~g~~~~---~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 341 DGGDEVS---DPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp -------------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred CCccccc---cccccccccccceeeeEEHHHHHHHHHh
Confidence 0000000 0000123456899999999866656654
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00043 Score=66.06 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=33.5
Q ss_pred eceEEcCCcEECCCCEEe--ce--EEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCC
Q 009817 421 EHSIVGERSRLDYGVELK--DT--VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 421 ~~siIg~~~~Ig~~~~I~--~s--~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~ 493 (524)
....||++|.|+++|.|. ++ -.+... .+.. ....++...-+.+++++.+. .++||++|.||.+++|..+
T Consensus 55 ~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~--s~~p--~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~g 128 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWA--STFP--FHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPG 128 (212)
T ss_dssp CCEEECSSCEECTTCEEECSTTTTCCTTSS--CCSC--GGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTT
T ss_pred cCEEEcCCCEECCCCEEEeCCCCccccccc--cccc--eeeecccccccccccCceecCCeEECCCCEECCCCEEeCC
Confidence 456888888888888873 11 111000 0000 00001110012344555443 4777777777777777765
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00026 Score=67.33 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=12.4
Q ss_pred ceEEcCCcEECCCCEE
Q 009817 422 HSIVGERSRLDYGVEL 437 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I 437 (524)
+++||++|.|+++|.|
T Consensus 60 ~v~IG~~~~Ig~gv~I 75 (209)
T 1mr7_A 60 KLKIGKFCSIGPGVTI 75 (209)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CEEECCCCEEcCCCEE
Confidence 3688888888888877
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.002 Score=60.82 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=71.5
Q ss_pred CceeEEEEe--CCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeE-EEEeccCchhHHHHHHHhhhcCCcc
Q 009817 93 KNVAAIILG--GGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTN 169 (524)
Q Consensus 93 ~~m~aVILA--aG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I-~Ivt~~~~~~l~~hl~~~y~~~~~~ 169 (524)
+.|.+||++ |...|||.|. ..+......++ |||+++++.+..++++++ ++++++... +.+
T Consensus 2 ~~~~~vip~k~g~~KtRL~~~---l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~~-------~~~------ 64 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSPV---LSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYGL-------EEM------ 64 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTTT---SCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTTC-------SSC------
T ss_pred CceEEEEEeCCCCCccccCcc---CCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHHH-------Hhh------
Confidence 458899999 7788888641 22222335678 999999999999999999 899876431 111
Q ss_pred cCCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHH
Q 009817 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQ 235 (524)
Q Consensus 170 ~~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~ 235 (524)
++ +.++... .|.+++++.+...+ .+.++++.||+ +.. ..+.++++
T Consensus 65 ~~---~~~v~~~-----------~gl~~sl~~a~~~~-------~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 65 TE---ARVLLDE-----------KDLNEALNRYLKEA-------EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp CS---SEEEECC-----------SCHHHHHHHHHHHC-------CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred cC---CEEEECC-----------CCHHHHHHHHHHhc-------CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 22 3444321 28899998886544 27899999998 333 44666665
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=84.08 E-value=8 Score=35.52 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=65.2
Q ss_pred ceeecCcchhHHHHHHHHHhcCCC--eEEEEeccCchhHHHHHHHhhhcCCcccCCCeEEEEccccCCCCCCCCcccCcH
Q 009817 119 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (524)
Q Consensus 119 LlpIgGk~pLId~~l~~l~~sGi~--~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V~vl~~~q~~~e~~~~~~~Gta 196 (524)
.+|.-+....|...|+.+.+.-.. +|+|+-....+...+.+ +.|... + ..+.++... . .|.+
T Consensus 10 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~-~~~~~~---~--~~i~~i~~~-n---------~G~~ 73 (240)
T 3bcv_A 10 IVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKIC-DDYAAQ---Y--PNIKVIHKK-N---------AGLG 73 (240)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHH-HHHHHH---C--SSEEEEECC-C---------CCHH
T ss_pred EEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHH-HHHHhh---C--CCEEEEECC-C---------CChH
Confidence 345555547888899988875443 56665543333322223 333211 1 136666422 1 4888
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceecccC-HHHHHHHHHHcCCcEEE
Q 009817 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (524)
Q Consensus 197 ~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad~tl 246 (524)
.+...++... ..+.++++.+|.+...+ +..+++...+.+.++.+
T Consensus 74 ~a~N~g~~~a------~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~ 118 (240)
T 3bcv_A 74 MACNSGLDVA------TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVF 118 (240)
T ss_dssp HHHHHHHHHC------CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHc------CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEE
Confidence 8888776654 35899999999988777 57888877766666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 524 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 4e-67 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 5e-30 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 6e-30 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 4e-25 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 2e-23 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 2e-18 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 9e-18 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 2e-07 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 2e-06 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 6e-05 | |
| d1fxja1 | 78 | b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha | 0.002 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 217 bits (552), Expect = 4e-67
Identities = 165/308 (53%), Positives = 217/308 (70%), Gaps = 9/308 (2%)
Query: 90 VDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFV 146
+DP ++V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+V
Sbjct: 4 LDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 63
Query: 147 LTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206
LTQFNSASLNRH++R Y N + + + A Q E+ +WFQGTADAVRQ+ W+F
Sbjct: 64 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP-DWFQGTADAVRQYLWLF 122
Query: 207 EDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN 266
+ + IL GDHLYRMDY FIQ+H + DADIT++ + E RA+ +GL+KID
Sbjct: 123 ---EEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE 179
Query: 267 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326
GRI +FAEKP G L+AM+VDT++LG + A++ P++ASMG+YV KDV+ LLR ++
Sbjct: 180 EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKF 239
Query: 327 PTSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK-ESPAFHFYDPK 384
P +NDFGSE+IP A VQAY++ YWEDIGTI++FY AN+ +TK P F FYD
Sbjct: 240 PGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRS 299
Query: 385 TPFYTSPR 392
P YT PR
Sbjct: 300 APIYTQPR 307
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 116 bits (293), Expect = 5e-30
Identities = 60/277 (21%), Positives = 100/277 (36%), Gaps = 48/277 (17%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P TL + +PV +I P+S + +GI +I +++
Sbjct: 4 GIILAGGSGTRLHPATLAISKQLLPVYD-KPMIYYPLSTLMLAGIREILIISTPQDTPRF 62
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G+G+N+G +++ A Q G A A N +
Sbjct: 63 QQ----LLGDGSNWG---LDLQYAVQ-------PSPDGLAQAFLIGES-----FIGNDLS 103
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+L + Y D+ + + S R ++ V YG+V+ D G+ EK
Sbjct: 104 ALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV--LDPERYGVVEFDQGGKAISLEEK 161
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--NDFGS 334
P K Y A G+Y + + V + R P+ +
Sbjct: 162 PLEP--------------------KSNY-AVTGLYFYDQQV-VDIARDLKPSPRGELEIT 199
Query: 335 EIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANM 369
++ A + + I W D GT S EA
Sbjct: 200 DVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ 236
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 112 bits (280), Expect = 6e-30
Identities = 57/135 (42%), Positives = 94/135 (69%), Gaps = 3/135 (2%)
Query: 393 FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTES 452
+LPP+K+ + + D++I GC ++ C + HS+VG RS + G ++D++++GADYY+T++
Sbjct: 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 60
Query: 453 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI 509
+ L A+G VPIG+G+N I+ IIDKN +IG +V I+NKD EA R G++I+SGI
Sbjct: 61 DRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 120
Query: 510 TIIMEKATIEDGMVI 524
+++ A I G++I
Sbjct: 121 VTVIKDALIPSGIII 135
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 103 bits (257), Expect = 4e-25
Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 56/285 (19%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++ I+L GG+GT+L+P+T + +P+ +I P+S + +GI I +++
Sbjct: 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYD-KPMIYYPLSVLMLAGIRDILIISTPRD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN- 211
L R G+G+ FG F + + +G ADA K+
Sbjct: 61 LPLYRD----LLGDGSQFGVRFSYRV----------QEEPRGIADAFIV-------GKDF 99
Query: 212 -RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
+ + +L + Y + + ++ + I V +G+V+ D+ GR+
Sbjct: 100 IGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV--RDPRPFGVVEFDSEGRV 157
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330
EK K Y G+Y + V+ R +
Sbjct: 158 ISIEEK--------------------PSRPKSNY-VVPGLYFYDNQVVEIARRIE---PS 193
Query: 331 DFGSEIIPAAIMEH------DVQAYIFRDYWEDIGTIKSFYEANM 369
D G I + E+ V+ W D GT EA+
Sbjct: 194 DRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS 238
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 97.9 bits (244), Expect = 2e-23
Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 52/278 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P+T + +P+ +I P+S + +GI +I ++T
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIYD-KPMIYYPLSVLMLAGIREILIITTPEDKGYF 62
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN--RNI 214
+ G+G+ FG +++ A Q + G A A +
Sbjct: 63 QR----LLGDGSEFG---IQLEYAEQPSPD-------GLAQAFII-------GETFLNGE 101
Query: 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
+ +L + + + ++ R T+ V +G+V+ D+ R
Sbjct: 102 PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFDDNFRAISLE 159
Query: 275 EKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN--DF 332
EK + K + A G+Y + V + + P+
Sbjct: 160 EK--------------------PKQPKSNW-AVTGLYFYDSKV-VEYAKQVKPSERGELE 197
Query: 333 GSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEAN 368
+ I + ++ + W D GT S EA+
Sbjct: 198 ITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 83.2 bits (204), Expect = 2e-18
Identities = 33/273 (12%), Positives = 73/273 (26%), Gaps = 33/273 (12%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG GT+L T+ P V + G ++ M GI + + +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG-KPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ A + + E T D+ + A+ +
Sbjct: 64 EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDE 123
Query: 217 VAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+ +D I H T++ +G + I + +
Sbjct: 124 AFLFTYGDGVADLDIKATIDFHKAHGKKATLTA----TFPPGRFGALDIQAGQVRSFQEK 179
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
+ + G +V V+ + + E
Sbjct: 180 PK-----------------------GDGAMINGGFFVLNPSVIDLIDNDAT----TWEQE 212
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368
+ + ++ A+ +W+ + T++
Sbjct: 213 PLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLE 245
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 82.7 bits (204), Expect = 9e-18
Identities = 22/206 (10%), Positives = 59/206 (28%), Gaps = 24/206 (11%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCI------NSGINKIFV 146
+ + L GG GT + + V +D+ + + + +
Sbjct: 73 DKLVVLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLM 129
Query: 147 LTQFNSASLNRHIARTYFGNGT-----------NFGDGFVEVLAATQTPGESGKNWFQGT 195
+ ++ + + N D FV + +T E + G
Sbjct: 130 NSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGW--YPPGH 187
Query: 196 ADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
D + ++ E V + D+L + + ++ + + +
Sbjct: 188 GDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTL 247
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSG 279
+ L+ + ++ + A+ P
Sbjct: 248 ADVKGGTLISYEGKVQLLEIAQVPDE 273
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 31/279 (11%), Positives = 69/279 (24%), Gaps = 66/279 (23%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL G GT+L PLT V V LI+ + GIN I ++ + +
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 64
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ A + K +
Sbjct: 65 YLKEKYGV-------------------------RLVFNDKYADYNNFYSLYLVKEELANS 99
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
I ++L++ + + + + + + ++
Sbjct: 100 YVIDADNYLFKNMFRNDLTRSTYFSVYREDCT---------NEWFLVYGDDYKVQDIIVD 150
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW------RYPTSN 330
GV + K++ + +
Sbjct: 151 SKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 186
Query: 331 DFGSEIIPAAIMEHDVQAY-IFRDYWEDIGTIKSFYEAN 368
+ ++ I E DV + + +I +++ + +
Sbjct: 187 LYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 41/267 (15%), Positives = 75/267 (28%), Gaps = 50/267 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL G GT++ VAG +++ + K + + +
Sbjct: 4 AIILAAGKGTRMKSDL---PKVLHKVAGIS-MLEHVFRSVGAIQPEKTVTVVGHKAELVE 59
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+A ++ GT AV + E
Sbjct: 60 EVLAGQTEFV---------------------TQSEQLGTGHAVMMTEPILEG--LSGHTL 96
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
V + + I H++ TI A YG + ++ + + E+
Sbjct: 97 VIAGDTPLITGESLKNLIDFHINHKNVATILTAET--DNPFGYGRIVRNDNAEVLRIVEQ 154
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF---KLLRWRYPTSNDFG 333
+ K + G YVF + LF K + +
Sbjct: 155 K-----------------DATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYI 197
Query: 334 SEIIPAAIME-HDVQAYIFRDYWEDIG 359
+++I V AY +D+ E +G
Sbjct: 198 TDVIGIFRETGEKVGAYTLKDFDESLG 224
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 42.7 bits (99), Expect = 6e-05
Identities = 32/279 (11%), Positives = 77/279 (27%), Gaps = 22/279 (7%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATP--AVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQF 150
A+++ GG G +L+PL+ R P +P+ L++ + + + +
Sbjct: 2 KTYALVMAGGRGERLWPLS-REDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 151 NSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAK 210
+ ++ R A G + +V +D
Sbjct: 61 DQEAVARPYADGIRLLLEPLGRDTAGA---VLLGVAEALKEGAERLLVLPADHYVGDDEA 117
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
R + + + + I + R + V+ +
Sbjct: 118 YREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGF--VEKPSYAEA 175
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKK-DVLFKLLRWRYPTS 329
++ K N + + + + A + + ++ L
Sbjct: 176 LEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLP------ 229
Query: 330 NDFGSEIIPAAIMEH--DVQAYIFRDYWEDIGTIKSFYE 366
I +ME V+ + R W+D+G ++
Sbjct: 230 ----KISIDYGVMEKAERVRVVLGRFPWDDVGNWRALER 264
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 34.8 bits (80), Expect = 0.002
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 467 VGRNTKI-RNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524
GR+ +I N II+ NV +G V I +G ++E A + I
Sbjct: 17 HGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTI 75
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 524 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.98 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.97 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.96 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.94 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.91 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.88 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.66 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.58 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.56 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.54 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.44 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.43 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.41 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.34 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.31 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 99.2 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.15 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.12 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.04 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.04 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.02 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 98.98 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.96 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.88 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.86 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.86 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 98.85 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.82 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.8 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.79 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.78 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.77 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.76 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.75 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.71 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.68 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.67 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.57 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.52 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.48 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.44 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.41 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.26 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.23 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.11 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.09 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.09 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.07 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.95 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.9 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.78 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.47 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.42 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=1.5e-45 Score=370.71 Aligned_cols=296 Identities=58% Similarity=1.038 Sum_probs=247.1
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
.++|.|||||||.||||+|||..+||||+||+|++|||+|++++|.++||++|+|+++++.+++.+|+.+.|..+-..+.
T Consensus 9 ~~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~ 88 (307)
T d1yp2a2 9 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 88 (307)
T ss_dssp HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC-------
T ss_pred CCceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhccccccccccc
Confidence 46699999999999999999999999999998866999999999999999999999999999999999876622211111
Q ss_pred -CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEE
Q 009817 172 -DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 172 -~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
.+...++...+... ...|..||+++++++++++++ ...++|++++||++++.++..+++.|+.+++++++++..
T Consensus 89 ~~~~~~~~~~~~~~~--~~~~~~g~~~ai~~~~~~i~~---~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~ 163 (307)
T d1yp2a2 89 NEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALP 163 (307)
T ss_dssp -CCEEEEEESCSSTT--SCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEE
T ss_pred ccccceeeceeeecc--ccccccchhHHHHHhHHhhhc---cccceEEEecCcceeccchhhhhhhhhhccccceEEEEe
Confidence 12334454444432 345778999999999999974 345789999999999999999999999999999988887
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
+..++.+.||++.+|++|+|..|.|||.......+.++..++.+.........++.++|+|+|++++|..+++...+...
T Consensus 164 ~~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~ 243 (307)
T d1yp2a2 164 MDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAN 243 (307)
T ss_dssp ECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCC
T ss_pred cccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhcccccc
Confidence 77666678999999999999999999998887777888888888877766678899999999999999988888777788
Q ss_pred chhhhhHHhhhhc-CceEEEEecCeEeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCc
Q 009817 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPR 392 (524)
Q Consensus 331 d~~~dii~~li~~-~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~-~~~~~~~~~~~i~~~~~ 392 (524)
++..++++.++++ .++++|.++|+|.||||+++|++||++++++. +.+.||+++++|||.++
T Consensus 244 ~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~~ 307 (307)
T d1yp2a2 244 DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPR 307 (307)
T ss_dssp CTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCC
T ss_pred chHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCCC
Confidence 8889999998887 68999999999999999999999999999876 56689999999999864
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=3.1e-40 Score=331.11 Aligned_cols=235 Identities=24% Similarity=0.374 Sum_probs=196.7
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+++|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++...... +.|++++.+++
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i----~~~~~~~~~~g-- 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF----QQLLGDGSNWG-- 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHH----HHHHTTSGGGT--
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHH----HHHhccccccC--
Confidence 36899999999999999999999999999999 999999999999999999998886543322 33455666676
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
+++.+..|. |++|||+|+..+.+++++ .+.|+++++|++++.|+.++++.|.++++.+++++.++++
T Consensus 74 -~~I~y~~q~-------~~~Gta~ai~~a~~~i~~-----~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~ 140 (292)
T d1fxoa_ 74 -LDLQYAVQP-------SPDGLAQAFLIGESFIGN-----DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD 140 (292)
T ss_dssp -CEEEEEECS-------SCCCGGGHHHHTHHHHTT-----SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC
T ss_pred -eEEEEccCC-------CCCcHHHHHHhhhhhcCC-----CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECCC
Confidence 333333332 357999999999999962 4567888889999999999999999999999999999876
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCc
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 331 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d 331 (524)
+++||++.+|++|+++.|.|||+.+. ++++.||+|+|+++++. +++...+. .+.
T Consensus 141 --p~~yGV~~~d~~~ki~~~~EKP~~p~---------------------Snla~~G~Y~f~~~~~~-~~~~l~~s~rgE~ 196 (292)
T d1fxoa_ 141 --PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRGEL 196 (292)
T ss_dssp --GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTSSC
T ss_pred --HHHCeEEEEcCCCCEeEEEECCCCCC---------------------CCcEEEEEEEEChHHHH-HHHhCCCCCCCch
Confidence 46899999999999999999998653 68999999999999986 45655444 345
Q ss_pred hhhhhHHhhhhcCceEEEEec-C-eEeecCCHHHHHHHHHHhh
Q 009817 332 FGSEIIPAAIMEHDVQAYIFR-D-YWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 332 ~~~dii~~li~~~~V~~y~~~-~-~w~dIgt~~d~~~An~~l~ 372 (524)
...|+++.++++.++.++.+. + +|+|+||+++|++|+..+.
T Consensus 197 eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 197 EITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp CHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 678999999999988888775 3 5999999999999997664
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-38 Score=319.01 Aligned_cols=233 Identities=22% Similarity=0.334 Sum_probs=194.1
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++||++|+|++++..+.+. +.+++++.+|+
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~----~~~~~~g~~~g--- 73 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYF----QRLLGDGSEFG--- 73 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHH----HHHHTTSGGGT---
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHH----HHHhCchHhhC---
Confidence 7999999999999999999999999999999 999999999999999999999998776543 34457777887
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
+.+.+..|.. ++|||+||..+.+++++ .+.+||+++|+++..++..+++.|.+++.++|+++.++++
T Consensus 74 i~I~y~~Q~~-------plGta~Ai~~a~~fi~~-----~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~d- 140 (291)
T d1mc3a_ 74 IQLEYAEQPS-------PDGLAQAFIIGETFLNG-----EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD- 140 (291)
T ss_dssp CEEEEEECSS-------CCCSTHHHHHTHHHHTT-----SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC-
T ss_pred cEEEEEECCC-------CCchHHHHHHHHHHhCC-----CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCC-
Confidence 3333333432 36999999999999962 3446677777889999999999999988899999999987
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CCch
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~d~ 332 (524)
+++||++.+|++|+|..|.|||+.+. ++++.+|+|+|+++++.. ++...+. .+..
T Consensus 141 -P~~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~~-~~~lk~s~rgE~E 197 (291)
T d1mc3a_ 141 -PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEY-AKQVKPSERGELE 197 (291)
T ss_dssp -CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHHH-HHSCCCCSSSSCC
T ss_pred -cccCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHHH-HhcCCCCCCCcee
Confidence 56899999999999999999998663 589999999999999974 4554443 2233
Q ss_pred hhhhHHhhhhcCceEEEEec-C-eEeecCCHHHHHHHHHHh
Q 009817 333 GSEIIPAAIMEHDVQAYIFR-D-YWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 333 ~~dii~~li~~~~V~~y~~~-~-~w~dIgt~~d~~~An~~l 371 (524)
..|+++.++++.++..+.+. + +|+|+||+++|.+|+..+
T Consensus 198 Itdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 198 ITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp HHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred ehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 57889999998887777764 3 699999999999999755
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=8.7e-34 Score=284.92 Aligned_cols=236 Identities=22% Similarity=0.345 Sum_probs=190.1
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
+.|+|||||||.||||+|+|...||||+||+|+ |||+|++++|.++|+++|+|++++....+.+++ +.+...++
T Consensus 2 ~~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~----~~~~~~~~- 75 (295)
T d1lvwa_ 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDL----LGDGSQFG- 75 (295)
T ss_dssp CSCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHH----HTTSGGGT-
T ss_pred CCcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHH----hccchhcC-
Confidence 468999999999999999999999999999999 999999999999999999999998876554333 33434444
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
..++++.+.+ ++|||+||+.+..++++ .+.++++++|+++..++..+++.|.+.+.++++++.+++
T Consensus 76 ~~i~~v~e~~---------~~gta~Al~~a~~~l~~-----~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~ 141 (295)
T d1lvwa_ 76 VRFSYRVQEE---------PRGIADAFIVGKDFIGD-----SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR 141 (295)
T ss_dssp SEEEEEECSS---------CCCGGGHHHHTHHHHTT-----SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS
T ss_pred CEEEEEECCC---------CCCHHHHHHHHHHHcCC-----CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcC
Confidence 2345454322 36999999999999862 356778888989999999999999999999999999887
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--CC
Q 009817 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (524)
Q Consensus 253 ~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~--~~ 330 (524)
+ +++||++.++++++|..|.|||..+. ++++++|+|+|++++|.. ++..... .+
T Consensus 142 ~--~~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~~-~~~~~~~~~~e 197 (295)
T d1lvwa_ 142 D--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEI-ARRIEPSDRGE 197 (295)
T ss_dssp C--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHH-HHHCCCCTTSC
T ss_pred C--CccccEEEECCCCcEEEEeecccCcc---------------------cceeecceEEECHHHHHH-HHhcCCCcCCC
Confidence 6 46799999999999999999998542 468999999999999864 4443222 33
Q ss_pred chhhhhHHhhhhcCc--eEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 331 DFGSEIIPAAIMEHD--VQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 331 d~~~dii~~li~~~~--V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
.+..++++.+++... ++.+..+.+|.|+||+++|.+|+..+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~ 241 (295)
T d1lvwa_ 198 LEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp CCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred eeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence 445678888887754 455555678999999999999988663
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.98 E-value=3.1e-31 Score=257.36 Aligned_cols=241 Identities=17% Similarity=0.275 Sum_probs=180.1
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhh-hcCCcccC-
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFG- 171 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y-~~~~~~~~- 171 (524)
..+|||||||.||||+|+|...||||+||+|+ |||+|++++|.++|+++|+|+++|.++++.+|+...+ +.....+.
T Consensus 2 ~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~ 80 (259)
T d1tzfa_ 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchh
Confidence 35899999999999999999999999999999 9999999999999999999999999999999986544 22211110
Q ss_pred -------------CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHH
Q 009817 172 -------------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238 (524)
Q Consensus 172 -------------~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~ 238 (524)
...+.++.... ..++.+++..+.+... ..++|+++++|.+++.++..+++.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~ 146 (259)
T d1tzfa_ 81 AENRMEVHHKRVEPWNVTLVDTGD---------SSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHK 146 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCS---------SCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHH
T ss_pred ccccchhhhccccccceeEEeccc---------cccccchhhhhhhhcc-----CCCceEEeccccccccchhhhhhhhc
Confidence 12233343322 2589999988876654 35789999999999999999999999
Q ss_pred HcCCcEEEEEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHH
Q 009817 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (524)
Q Consensus 239 ~~~ad~tl~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL 318 (524)
..+...+...... .+.++.+... ..++..+.+.+... +++.++|+|+++++++
T Consensus 147 ~~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~----------------------~~~~~~G~y~~~~~~~ 199 (259)
T d1tzfa_ 147 AHGKKATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVI 199 (259)
T ss_dssp HHCCSEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGG
T ss_pred ccccceeeccccc----cccCCceecc-cceEEeeeeccccc----------------------eeeecceeccccchhh
Confidence 8888777665533 2456665554 45677666655432 3678999999999976
Q ss_pred HHHHHhhCCCCCchhhhhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhccCCCccc
Q 009817 319 FKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHF 380 (524)
Q Consensus 319 ~~ll~~~~~~~~d~~~dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~~~~~~~~ 380 (524)
..+ ......+..++++.+++++++.+|.++|+|.||||++||..+|..+.+..+.+.+
T Consensus 200 ~~i----~~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~~~~~~ 257 (259)
T d1tzfa_ 200 DLI----DNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAPWKT 257 (259)
T ss_dssp GGC----CSTTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTCCTTCC
T ss_pred hhc----ccCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcCCCCCCC
Confidence 532 2334566778999999999999999999999999999999999999887654443
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=7.9e-31 Score=259.81 Aligned_cols=234 Identities=20% Similarity=0.335 Sum_probs=167.8
Q ss_pred ceeEEEEeCCCCCcccCC-ccCCCccceee-cCcchhHHHHHHHHHh-cCCCeEEEEeccCchhHHHHHHHhhhcCCccc
Q 009817 94 NVAAIILGGGAGTKLFPL-TLRAATPAVPV-AGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PL-T~~~PKpLlpI-gGk~pLId~~l~~l~~-sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~ 170 (524)
++.|||||||.||||||| |+.+||||+|| ||+ |||+++++++.+ .++++++|++++..+.+.++ +..+
T Consensus 2 Ki~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k-~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~-----~~~~--- 72 (268)
T d2cu2a2 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARP-----YADG--- 72 (268)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGG-----GCSS---
T ss_pred CceEEEecCCCcccCCCcccCCCCceeeecCCCC-CHHHHHHHHhhCcCCccchhhhhhHHHHHHhhh-----hccc---
Confidence 346999999999999999 67889999997 567 999999999987 47889999999877665432 2221
Q ss_pred CCCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCH--HHHHHHHH---HcCCcEE
Q 009817 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY--MDFIQSHV---DRDADIT 245 (524)
Q Consensus 171 ~~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl--~~ll~~h~---~~~ad~t 245 (524)
+.++.+.+. +||++++..++..+.. ...+.|+|++||++++.++ .+.+..+. +.+..++
T Consensus 73 ----~~ii~E~~~---------~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~ 136 (268)
T d2cu2a2 73 ----IRLLLEPLG---------RDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVA 136 (268)
T ss_dssp ----SEEEEESSC---------CHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ----cceeeeeec---------CCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEe
Confidence 233333332 5999999988766542 3568999999999998774 44444332 3345455
Q ss_pred EEEEEcCCCCCCcceEEEECCCC----cEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHH
Q 009817 246 ISCAAVGESRASDYGLVKIDNMG----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (524)
Q Consensus 246 l~~~~~~~~~a~~~g~v~id~~g----~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~l 321 (524)
+...+... ++.||++..++++ +|..|.|||.....+.+. ...+++++|+|+|++++|.+.
T Consensus 137 ~~~~~~~~--~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~--------------~~~~~~N~Giy~f~~~~l~~~ 200 (268)
T d2cu2a2 137 LGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI--------------RKGYVWNGGVFAFAPATMAEL 200 (268)
T ss_dssp EEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH--------------HTTCEEEEEEEEECHHHHHHH
T ss_pred eecccccc--ccccceEEeccccccchhhheeecccchhhhhhhh--------------ccCcccchhhhhcchHHHHHH
Confidence 55555444 5789999987653 799999999876543221 134789999999999998776
Q ss_pred HHhhCCC---------CCchhhhhHHhh---------h-hcCceEEEEecCeEeecCCHHHHHHHH
Q 009817 322 LRWRYPT---------SNDFGSEIIPAA---------I-MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (524)
Q Consensus 322 l~~~~~~---------~~d~~~dii~~l---------i-~~~~V~~y~~~~~w~dIgt~~d~~~An 368 (524)
++...+. ......+.++.+ + +..++.++.++++|.||||++++++..
T Consensus 201 ~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 201 FRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 6654432 111222333321 2 236899999999999999999999764
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.96 E-value=6.3e-29 Score=237.56 Aligned_cols=219 Identities=16% Similarity=0.196 Sum_probs=164.3
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+|+|||||||.||||+|+|...||||+||+|+ |||+|+++.+.++|+++|+|+++|.++++ +|+.+.| +
T Consensus 3 ~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i-~~~~~~~-------~-- 71 (229)
T d1jyka_ 3 RVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQF-DYLKEKY-------G-- 71 (229)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGG-THHHHHH-------C--
T ss_pred ceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhh-hhhhhhc-------c--
Confidence 68999999999999999999999999999999 99999999999999999999999998887 4554443 2
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
++++...+.. ..||+++++.+.+.++ ++|+++++|.+++..+.+.+ ....+.+..+.+
T Consensus 72 -i~i~~~~~~~-------~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~~~ 129 (229)
T d1jyka_ 72 -VRLVFNDKYA-------DYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRNDL-------TRSTYFSVYRED 129 (229)
T ss_dssp -CEEEECTTTT-------TSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCSCC-------CSEEEEECEESS
T ss_pred -cccccccccc-------ccccccccccchhhhc-------ccccccccccccccchhhhh-------hccccceeeeee
Confidence 3444333321 2599999999877664 57887777777665543322 122333333333
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHH---HHhhCC---
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL---LRWRYP--- 327 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~l---l~~~~~--- 327 (524)
...++.+..+++++|..+.++|+. .++.+|+|+|++.....+ ++....
T Consensus 130 --~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~ 183 (229)
T d1jyka_ 130 --CTNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVSGE 183 (229)
T ss_dssp --CSSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTTTC
T ss_pred --ccccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhcccc
Confidence 356888899999999999998763 346789999998765433 333221
Q ss_pred CCCchhhhhHHhhhhcCceEEEEecCe-EeecCCHHHHHHHHHHh
Q 009817 328 TSNDFGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMAL 371 (524)
Q Consensus 328 ~~~d~~~dii~~li~~~~V~~y~~~~~-w~dIgt~~d~~~An~~l 371 (524)
..+.+..+++...+++.+++.+.+.+. |.+|||++||..|+..+
T Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 184 FVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp CTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 123345567788888899999998874 99999999999998754
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.94 E-value=5.1e-26 Score=218.72 Aligned_cols=232 Identities=18% Similarity=0.247 Sum_probs=178.6
Q ss_pred eEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeE
Q 009817 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (524)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V 175 (524)
.|||||||.||||+| .+||||+||+|+ |||+|+++.+.++|+++|+|++++..+.+..+. ... +
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~-----~~~-------~ 66 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVL-----AGQ-------T 66 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHT-----TTT-------S
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhc-----ccc-------c
Confidence 599999999999998 479999999999 999999999999999999999999876554332 111 1
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccCHHHHHHHHHHcCCcEEEEEEEcCCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~ 254 (524)
.+..... ..||.+++..+...+.. ...+.+++..+|.++ ..++..+++.|.+.++..++...+...
T Consensus 67 ~~~~~~~---------~~g~~~~~~~a~~~l~~---~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~- 133 (250)
T d1g97a2 67 EFVTQSE---------QLGTGHAVMMTEPILEG---LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN- 133 (250)
T ss_dssp EEEECSS---------CCCHHHHHHTTHHHHTT---CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC-
T ss_pred ccccccc---------ccccchHHHHHHHhhhc---ccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc-
Confidence 1111111 24999999999888863 233455555556555 456899999999999999988887765
Q ss_pred CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC---CCCc
Q 009817 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (524)
Q Consensus 255 ~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~---~~~d 331 (524)
...|+.+..++++.+..+.+++..... ....++.++|+|+|+...|...++.... ....
T Consensus 134 -~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~ 195 (250)
T d1g97a2 134 -PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQGEY 195 (250)
T ss_dssp -CTTSCEEEECTTCCEEEEECGGGCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSC
T ss_pred -cCCCceEEEeeceEEEEeecccccccc-----------------ccccceeeeeeeecchHHHHHHHHHhccCcchhhH
Confidence 357898999999999999998764421 1134678999999999988877664332 2345
Q ss_pred hhhhhHHhhhhc-CceEEEEecCeEee--cCCHHHHHHHHHHhhcc
Q 009817 332 FGSEIIPAAIME-HDVQAYIFRDYWED--IGTIKSFYEANMALTKE 374 (524)
Q Consensus 332 ~~~dii~~li~~-~~V~~y~~~~~w~d--Igt~~d~~~An~~l~~~ 374 (524)
+..++++.++++ .+|.++.++++|.+ |+|++||..|+..+.++
T Consensus 196 ~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~~ 241 (250)
T d1g97a2 196 YITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRR 241 (250)
T ss_dssp CGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHHH
Confidence 677888888876 68999999999977 77999999998877643
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.1e-23 Score=202.59 Aligned_cols=230 Identities=15% Similarity=0.220 Sum_probs=160.2
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
+.|++||||||.||||+| .+||||+||+|+ |||+|+|+.+.+.|+++|+|++++..+.+..+. .+ .
T Consensus 1 ~~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~-----~~---~-- 66 (248)
T d2oi6a2 1 NAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQAL-----KD---D-- 66 (248)
T ss_dssp CCEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-----CC---T--
T ss_pred CCceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeec-----cc---c--
Confidence 469999999999999998 579999999999 999999999999999999999999877664332 11 1
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecccC--HHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~~d--l~~ll~~h~~~~ad~tl~~~~ 250 (524)
....+.... ..||++++.++...+. ...+++++.+|..+... +..+. +.......++...+
T Consensus 67 ~~~~~~~~~----------~~g~~~~~~~~~~~i~-----~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 129 (248)
T d2oi6a2 67 NLNWVLQAE----------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLR--DAKPQGGIGLLTVK 129 (248)
T ss_dssp TEEEEECSS----------CCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHHH--HHCCTTSEEEEEEE
T ss_pred ccccccccc----------CcccHHHHHhhhhhhc-----cccceeeecCccccccchhHHHHH--HHhhccccceeEEE
Confidence 112222221 2599999999887764 34788888888876432 22222 22234445555555
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC--
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-- 328 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~-- 328 (524)
..+ +..++.+..+. +....+.+++..... .....+..+|.|.|+.+.|.+.++.....
T Consensus 130 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 189 (248)
T d2oi6a2 130 LDD--PTGYGRITREN-GKVTGIVEHKDATDE-----------------QRQIQEINTGILIANGADMKRWLAKLTNNNA 189 (248)
T ss_dssp CSC--CTTSCEEEEET-TEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCCCST
T ss_pred ecC--Ccccccccccc-CccceeeeccCCChh-----------------hhhhhhhhhhhhccchHHHHHHHHHhhcccc
Confidence 554 34577666554 555555444332210 01245678999999999887766543322
Q ss_pred -CCchhhhhHHhhhhc-CceEEEEecCeEe--ecCCHHHHHHHHHHhhc
Q 009817 329 -SNDFGSEIIPAAIME-HDVQAYIFRDYWE--DIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 -~~d~~~dii~~li~~-~~V~~y~~~~~w~--dIgt~~d~~~An~~l~~ 373 (524)
...+..++++.++++ .+|.++..+++|. .|+|++||..|++.+..
T Consensus 190 ~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~ 238 (248)
T d2oi6a2 190 QGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQS 238 (248)
T ss_dssp TCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence 233567888888876 6899998888885 38899999999886653
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.88 E-value=2.7e-22 Score=177.70 Aligned_cols=129 Identities=40% Similarity=0.832 Sum_probs=118.9
Q ss_pred cCCCeEEcCeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHH---hhhcCCccceEeCC
Q 009817 393 FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIA---SLLAEGKVPIGVGR 469 (524)
Q Consensus 393 i~p~~~i~~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~---~~~~~g~~~~~Ig~ 469 (524)
++||+++.++++.+|+|++||+|+++.+++|+||++|+|++++.|+++++++++++..+.+.. ...++. +.||+
T Consensus 1 ~lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~---v~Ig~ 77 (135)
T d1yp2a1 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVP---IGIGK 77 (135)
T ss_dssp CCCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCC---SEECT
T ss_pred CCCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCC---CEECc
Confidence 579999999999999999999999889999999999999999999999999999999888773 344444 89999
Q ss_pred CcEEeeeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 470 NTKIRNCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 470 ~~~I~~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
+|+|++|+|++||+||++++|.+.. +.++..++++|++|.++|++|++|++||+|
T Consensus 78 ~~~I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 78 NCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp TCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred ceEeccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 9999999999999999999999986 557888999999999999999999999997
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.3e-15 Score=144.41 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=133.5
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
++.|||||||.||||. ..+||+|+||+|+ |||+|+++.+.++ ++++|+|+++++.+.+..+. ... +
T Consensus 3 ~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~----~~~---~-- 69 (225)
T d1i52a_ 3 DVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLP----LAN---H-- 69 (225)
T ss_dssp CEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSG----GGG---C--
T ss_pred CEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhh----hcc---c--
Confidence 5679999999999997 4689999999999 9999999999987 68999999988765543221 111 1
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cc-CHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~-dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
..+.+.... .++.++++.+...+.+ .+.+++..+|..+ .. .+..+++...... ...+.+.+
T Consensus 70 ~~v~~~~~~-----------~~~~~sv~~~~~~~~~-----~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~-~~~v~~~~ 132 (225)
T d1i52a_ 70 PQITVVDGG-----------DERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSETSR-TGGILAAP 132 (225)
T ss_dssp TTEEEEECC-----------SSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGTCS-SCEEEEEE
T ss_pred cccccccCC-----------cchhHHHHhhhcccCc-----cceeeeeccCCCCCCHHHHHHHHhhhhhcc-cccccccc
Confidence 124443322 2567899988877753 4677788888643 33 3566665554443 34555555
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
..++ ........+......++.. .+...+.+.|..+.|...++......
T Consensus 133 ~~d~-----~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~~- 181 (225)
T d1i52a_ 133 VRDT-----MKRAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNEG- 181 (225)
T ss_dssp CCSC-----EEEECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHTT-
T ss_pred eeec-----cchhcccccccccccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhcC-
Confidence 4331 1112222333333222111 22344677888887777666543222
Q ss_pred chhhhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHh
Q 009817 331 DFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 331 d~~~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l 371 (524)
.+..|....+.. +.++..+.-+..-..|+||+||..|+..|
T Consensus 182 ~~~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 182 ATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp CCCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 223444433333 35676655332225699999999998755
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.58 E-value=1.2e-14 Score=138.46 Aligned_cols=219 Identities=13% Similarity=0.090 Sum_probs=125.0
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
+++.+||||||.||||. ...||+|++|+|+ |||+|+++.+.++ .+++|+|+++....++. +.+.. .+.
T Consensus 3 k~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~~----~~~~~---~~~ 71 (226)
T d1w77a1 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIF----EEYEE---SID 71 (226)
T ss_dssp TCEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHHH----HTTTT---SCS
T ss_pred CceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhhh----hcccc---ccc
Confidence 56889999999999997 3689999999999 9999999999988 57899998875443332 23311 222
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
..+.+.. .. ..+.++++.++..+. ...+.+++..||.-+ . ..+..+++.+.+.+.. +...
T Consensus 72 -~~~~~~~--gg---------~~r~~sv~~~l~~~~----~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~--i~~~ 133 (226)
T d1w77a1 72 -VDLRFAI--PG---------KERQDSVYSGLQEID----VNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAA--VLGV 133 (226)
T ss_dssp -SEEEEEC--CC---------SSHHHHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEE--EEEE
T ss_pred -ccccccc--cc---------chhhhhhhhhHhhhc----cccccceecccccccccHHHhhhhhhhhhccCce--eecc
Confidence 1244332 11 135788988877664 245778888999844 3 3478888877776553 3333
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
+..+.. .+ ...++.+....+. ...+..-+-++|+.+.|.+.++......
T Consensus 134 ~~~d~~--~~----~~~~~~~~~~~~r-------------------------~~~~~~~~p~~f~~~~l~~~~~~~~~~~ 182 (226)
T d1w77a1 134 PAKATI--KE----VNSDSLVVKTLDR-------------------------KTLWEMQTPQVIKPELLKKGFELVKSEG 182 (226)
T ss_dssp ECCSCC--CC----BCTTSCBC-------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSC
T ss_pred ccccce--EE----EccCCceeecccc-------------------------hhhhHHHHHHhHhhHHHHHHHHHHHhcC
Confidence 322211 00 0112222111100 1134445678999988877665433222
Q ss_pred CchhhhhHHhh-hhcCceEEEEecCeEeecCCHHHHHHHHHHhh
Q 009817 330 NDFGSEIIPAA-IMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (524)
Q Consensus 330 ~d~~~dii~~l-i~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~ 372 (524)
..+ .|....+ ..++++..+.-+..-..|+||+|+..|+..|.
T Consensus 183 ~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL~ 225 (226)
T d1w77a1 183 LEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (226)
T ss_dssp CCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHHH
T ss_pred CCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHhC
Confidence 222 2211111 22467765554333346999999999987654
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.56 E-value=1.4e-13 Score=130.68 Aligned_cols=218 Identities=10% Similarity=0.076 Sum_probs=120.3
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
+..|||||||.||||. ..+||+|++|+|+ |||+|+++.+.+++ +++|+|++... +.+.+++...+ ..
T Consensus 3 K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~-~~------ 70 (226)
T d1vgwa_ 3 KNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAF-PQ------ 70 (226)
T ss_dssp CEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHC-TT------
T ss_pred ceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecchh-hhhhhhhcccc-cc------
Confidence 4569999999999996 4689999999999 99999999999985 57777776544 44555554322 11
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhh-hcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCA 249 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~-~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~ 249 (524)
.+.+.... ....++++.++..+.+. .....+.+++..||. +.. ..+.++++.+...+.+.. ...
T Consensus 71 -~~~~~~g~-----------~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i-~~~ 137 (226)
T d1vgwa_ 71 -VRVWKNGG-----------QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGI-LAV 137 (226)
T ss_dssp -SEEECCCC-----------SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEE-EEE
T ss_pred -eeeccccc-----------cccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhccccccee-ecc
Confidence 12222111 12344555554444321 123446788888886 334 347888888877766543 333
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 250 ~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
+..+ ..... +++.+....++.... ....-..|..+.|.+.+.... .
T Consensus 138 ~~~~------~~~~~-~~~~i~~~~~r~~~~-------------------------~~~~p~~f~~~~l~~~~~~~~--~ 183 (226)
T d1vgwa_ 138 PVAD------TLKRA-ESGQISATVDRSGLW-------------------------QAQTPQLFQAGLLHRALAAEN--L 183 (226)
T ss_dssp ECCS------CEEEE-SSSBEEEEECCTTEE-------------------------EEEEEEEEEHHHHHHHHHC-----
T ss_pred cccc------cceec-cCCeEEeccchHHHH-------------------------HHHhhhcccHHHHHHHHHHhh--c
Confidence 3322 22223 457776665543321 112235677777765554321 1
Q ss_pred CchhhhhHHhhh-hcCceEEEEecCeEeecCCHHHHHHHHHHh
Q 009817 330 NDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 330 ~d~~~dii~~li-~~~~V~~y~~~~~w~dIgt~~d~~~An~~l 371 (524)
.++ .|....+. .+.++..+.-+.....|+||+||..|+..|
T Consensus 184 ~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~ll 225 (226)
T d1vgwa_ 184 GGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLL 225 (226)
T ss_dssp -CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred CCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHHh
Confidence 122 23222222 246777665554567899999999997543
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=9.1e-14 Score=131.55 Aligned_cols=210 Identities=13% Similarity=0.179 Sum_probs=127.9
Q ss_pred EEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCeE
Q 009817 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (524)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~V 175 (524)
|||||||.||||+ ...||+|++|+|+ |||+|+++.+.++ ++++|+|+++..... ++.... +....+
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~~---~~~~~~------~~~~~~ 72 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFE---VVEKRV------FHEKVL 72 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHH---HHHTTC------CCTTEE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhhh---HHHhhh------cccccc
Confidence 8999999999996 4689999999999 9999999999997 689999998754322 222111 111234
Q ss_pred EEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-cCHHHHHHHHHHcCCcEEEEEEEcCC
Q 009817 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCAAVGE 253 (524)
Q Consensus 176 ~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~-~dl~~ll~~h~~~~ad~tl~~~~~~~ 253 (524)
.+.... .+..+++..++..+.. ...+.++++.||..+ . ..+..+++.+.+... .+...+..+
T Consensus 73 ~~~~~~-----------~~~~~s~~~~~~~~~~---~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~d 136 (221)
T d1vpaa_ 73 GIVEGG-----------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNSD 136 (221)
T ss_dssp EEEECC-----------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECCS
T ss_pred cccccc-----------ccccchHHHHHHHHHh---cCCCcEEEeccccccccHHHHHhhhhhhccccc--ccccccccc
Confidence 444322 1445666666655542 356889999999854 3 347888888776543 223333221
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCCchh
Q 009817 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (524)
Q Consensus 254 ~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~d~~ 333 (524)
.+...+ +++...+ ++ ...+...+-+.|+.+.|....+.. .++
T Consensus 137 ------~~~~~~-~~~~~~~---~~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~----~~~- 178 (221)
T d1vpaa_ 137 ------ALVRVE-NDRIEYI---PR-----------------------KGVYRILTPQAFSYEILKKAHENG----GEW- 178 (221)
T ss_dssp ------EEEEEE-TTEEEEE---CC-----------------------TTEEEEEEEEEEEHHHHHHHHTTC----CCC-
T ss_pred ------eeEeec-Cccceec---ch-----------------------HHHHHhhhhhhhhHHHHHHHHHhC----CCC-
Confidence 122222 2222111 11 113456677788888776654322 122
Q ss_pred hhhHHhhhh-cCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 334 SEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 334 ~dii~~li~-~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
.|.+..+.. +.++..+.-+.....|+|++||..|+..+.+
T Consensus 179 tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk~ 219 (221)
T d1vpaa_ 179 ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIARE 219 (221)
T ss_dssp SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHhc
Confidence 333333333 3567665544344579999999999866543
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=7.2e-12 Score=119.92 Aligned_cols=243 Identities=13% Similarity=0.177 Sum_probs=150.9
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
..+||+|.|.++|+ ..|+|.+|+|+ |||+|+++.+.++++++|+|.|.. +++.... +.| +. .
T Consensus 2 ~~~iIpAR~gSkRl------p~Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsTd~--~~i~~~~-~~~-------~~-~ 63 (255)
T d1vica_ 2 FTVIIPARFASSRL------PGKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVA-KSF-------GA-E 63 (255)
T ss_dssp CEEEEECCCCCSSS------TTGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHH-HHT-------TC-E
T ss_pred EEEEEecCCCCCCC------CCchhhhhCCc-CHHHHHHHHHHHCCCCeEEEEcCC--cccchhh-hhh-------cc-c
Confidence 36899999999998 23999999999 999999999999999999888864 4444333 222 21 1
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.+..... ..||..+...+.... ....+.++++.||..+. ..+..+++.+.....+.+.......
T Consensus 64 ~~~~~~~~---------~~~~~~~~~~~~~~~----~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 130 (255)
T d1vica_ 64 VCMTSVNH---------NSGTERLAEVVEKLA----IPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIH 130 (255)
T ss_dssp EEECCCSS---------CCHHHHHHHHHHHTT----CCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred cceeeecc---------CCcchhhHHHHHHhh----ccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeecc
Confidence 22222221 135555544433322 23456788889998654 3478888888888777766665543
Q ss_pred CC---CCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 253 ES---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 253 ~~---~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
.. ..........++++.+..+...+.......... ............+....|+|+|+++.|..+... .+..
T Consensus 131 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~ 205 (255)
T d1vica_ 131 DAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMN----LQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APTQ 205 (255)
T ss_dssp CHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTT----CSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred chhhccCccceeeeeccCCcccccccccccccchhhhh----ccchhhcccccchheeeeeecccHHHHhhhhcc-CCCh
Confidence 21 112344667788899999888765432110000 000001111234667889999999988765432 1111
Q ss_pred Cchhh--hhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHhhc
Q 009817 330 NDFGS--EIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 330 ~d~~~--dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l~~ 373 (524)
.+-.. +.+..+-.+.++..+..+. .+.||+|++||..|+..|.+
T Consensus 206 le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilkk 252 (255)
T d1vica_ 206 LENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAA 252 (255)
T ss_dssp HHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHHH
Confidence 00000 1222233446888887765 47899999999999877654
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.43 E-value=4.7e-12 Score=120.94 Aligned_cols=237 Identities=14% Similarity=0.184 Sum_probs=147.8
Q ss_pred eeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCCe
Q 009817 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (524)
Q Consensus 95 m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~~ 174 (524)
..|||+|.|.++|+ .-|+|.+|+|+ |||+|+++.+.++++++|+|.|. ++.+.++.. . ++. .
T Consensus 2 ~i~iIpAR~gSkri------p~KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~-~-------~g~-~ 63 (246)
T d1vh1a_ 2 FVVIIPARYASTRL------PGKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVE-A-------AGG-E 63 (246)
T ss_dssp CEEEEECCCCCC--------CCTTTCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-H-------TTC-E
T ss_pred EEEEEecCCCCcCC------CCchhhhcCCc-cHHHHHHHHHHHcCCCcEEEEec--Cccccchhh-c-------ccc-c
Confidence 36899999999998 23999999999 99999999999999999999995 455555553 2 221 1
Q ss_pred EEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHHcCCcEEEEEEEcC
Q 009817 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (524)
Q Consensus 175 V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tl~~~~~~ 252 (524)
+.+...... .|+.... .+..... ....+.++.+.||..+. .++..+++.+.....+....+.+..
T Consensus 64 v~~~~~~~~---------~~~~~~~-~~~~~~~---~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 130 (246)
T d1vh1a_ 64 VCMTRADHQ---------SGTERLA-EVVEKCA---FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIH 130 (246)
T ss_dssp EEECC--------------CHHHHH-HHHHHTT---CCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECC
T ss_pred ceeeccccc---------ccchHHH-HHHHhhc---ccccceeeeeccccccchhhHHHHHhhhhccccccccccccccc
Confidence 333222211 2454443 3333322 23456788899998664 3578888888888887776666554
Q ss_pred CCC---CCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCC
Q 009817 253 ESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (524)
Q Consensus 253 ~~~---a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~ 329 (524)
... ......+..+.+|++..|...+.......... ........++...|+|+|+++.|...... .++.
T Consensus 131 ~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~giy~~~~~~l~~~~~~-~~s~ 201 (246)
T d1vh1a_ 131 NAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAE--------GLETVGDNFLRHLGIYGYRAGFIRRYVNW-QPSP 201 (246)
T ss_dssp CHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSS--------CCCCCCSCCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred chhcccCCCcceeeecccCcccccccccchhhhhhhhh--------hhhccchhhheecceeeechhhhhhhccC-CCCh
Confidence 311 11233456688899999887664332111000 00011134677889999999998765332 1111
Q ss_pred Cc--hhhhhHHhhhhcCceEEEEecCe-EeecCCHHHHHHHHHHh
Q 009817 330 ND--FGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMAL 371 (524)
Q Consensus 330 ~d--~~~dii~~li~~~~V~~y~~~~~-w~dIgt~~d~~~An~~l 371 (524)
.+ ..-|.++.+-.+.++..+..+.. ..||+|++||..|...|
T Consensus 202 ~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 202 LEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp HHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 00 01133433333568988888764 68999999999998654
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.41 E-value=6.2e-12 Score=119.82 Aligned_cols=230 Identities=14% Similarity=0.211 Sum_probs=143.3
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
+.-+||+|.|.++|| ..|+|++|+|+ |||+|+++++.++ ++++|+|+|.. +.+.... +. ++.
T Consensus 2 k~i~iIpAR~~SkRl------~~Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td~--~~i~~~~-~~-------~~~ 64 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRL------PGKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAV-QA-------FGG 64 (245)
T ss_dssp CEEEEEECCSCCSSS------TTGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHH-HH-------TTC
T ss_pred CEEEEEcCCCCCcCC------CCccccccCCc-cHHHHHHHHHHhCCCCCeEEEeccc--ccchhhh-hh-------cCc
Confidence 457999999999998 34999999999 9999999999997 78899888865 3333332 22 221
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
.+ ++..... .++.+.+..+...+. .+.++++.||..+. ..+..+++.+.............
T Consensus 65 -~~-~~~~~~~---------~~~~~~~~~~~~~~~------~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~ 127 (245)
T d1h7ea_ 65 -KA-IMTRNDH---------ESGTDRLVEVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH 127 (245)
T ss_dssp -EE-EECCSCC---------SSHHHHHHHHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred -eE-EEecCcc---------ccccHHHHHHHHhcC------CCEEEEecchhhhcccccchhhhhccccccccccccccc
Confidence 12 2211111 245556666655553 47788899998653 34788888877766554333332
Q ss_pred cCC--CCC-CcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCC
Q 009817 251 VGE--SRA-SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (524)
Q Consensus 251 ~~~--~~a-~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~ 327 (524)
... ... .....+.....+.+..+...+...... .........+|+|.|+++.|.++... .+
T Consensus 128 ~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~l~~~~~~-~~ 191 (245)
T d1h7ea_ 128 AISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRN---------------AEKARYLKHVGIYAYRRDVLQNYSQL-PE 191 (245)
T ss_dssp EECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTT---------------GGGCCEEEEEEEEEEEHHHHHHGGGS-CC
T ss_pred ccccccccCCcceeeccchhhhhhhhhhhhhhhhhc---------------ccccccceeeeeEEeeeccccccccc-cC
Confidence 211 111 122334455566777777665533211 11124567889999999988764321 11
Q ss_pred CCCchhh--hhHHhhhhcCceEEEEecCeEeecCCHHHHHHHHHHhhc
Q 009817 328 TSNDFGS--EIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 328 ~~~d~~~--dii~~li~~~~V~~y~~~~~w~dIgt~~d~~~An~~l~~ 373 (524)
+...... |.+..+-.+.++..+..+..|.+|+|++||..|+..+.+
T Consensus 192 s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~~ 239 (245)
T d1h7ea_ 192 SMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp CHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 1100001 234322245789999988889999999999999876654
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=3.9e-13 Score=127.81 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=87.9
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccCCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~~ 173 (524)
+..|||||||+|+||++++. .||+|+||+|+ |||+|+++.+.++|+++|+|++++..... .
T Consensus 2 ~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~~--------------~--- 62 (231)
T d2dpwa1 2 RPSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVPA--------------P--- 62 (231)
T ss_dssp CCEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSSC--------------C---
T ss_pred CceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccce--------------e---
Confidence 34799999999999999884 58999999999 99999999999999999988887743211 0
Q ss_pred eEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-cCHHHHHHHHHHcCCcEEEEEEEc
Q 009817 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (524)
Q Consensus 174 ~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad~tl~~~~~ 251 (524)
.... . +..|+.++++.++..++ +.++++.||. +.+ ..+..+++.+. +.+..+.+.+.
T Consensus 63 -~~~~---~--------~~~~~~~~v~~al~~~~-------~~~lv~~~D~P~i~~~~i~~l~~~~~--~~~~~~~~~~~ 121 (231)
T d2dpwa1 63 -ALTL---P--------DRGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLDKAP--EAALVYPIVPK 121 (231)
T ss_dssp -SEEE---C--------CCSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHHHCC--SCSEEEEEEEH
T ss_pred -eeec---c--------cchHHHHHHHHHHHhhc-------CceEEeeCCCccCCHHHHHHHHHHhh--hcCceEEEEec
Confidence 1111 1 12489999999887654 7899999998 444 34788887654 34455555544
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2.3e-11 Score=111.14 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=75.1
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcCCCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sGi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
|.++.|||||||+||||+. .+|+|++++|+ |||+|+++.+... +.+|+|+++...+.. .. ++
T Consensus 1 M~~i~~iILAgG~ssRmG~----~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~-----~~-------~~ 62 (188)
T d1e5ka_ 1 MTTITGVVLAGGKARRMGG----VDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIY-----QA-------SG 62 (188)
T ss_dssp CCSEEEEEECCCCCSSSCS----SCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHH-----HT-------TS
T ss_pred CCceeEEEEcCCCCcCCCC----CCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhh-----hh-------cC
Confidence 6778999999999999962 58999999999 9999999998876 567888887653321 11 11
Q ss_pred CCeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-ccC-HHHHHH
Q 009817 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQ 235 (524)
Q Consensus 172 ~~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~-~~d-l~~ll~ 235 (524)
+.+....... ..|...++..+.... ..+.++++.||.-+ ..+ +..+++
T Consensus 63 ---~~v~~d~~~~-------~~~~~~g~~~~~~~~------~~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 63 ---LKVIEDSLAD-------YPGPLAGMLSVMQQE------AGEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp ---CCEECCCTTC-------CCSHHHHHHHHHHHC------CSSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ---CCcccccccc-------ccchhHHHHHHHHhc------ccceEEEeccCCCCCCHHHHHHHHH
Confidence 2222221111 136666776665443 35889999999944 555 455544
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=99.20 E-value=3.9e-11 Score=116.67 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=44.4
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCcE-----EEcCCCEeCCCccc
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGIT-----IIMEKATIEDGMVI 524 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~~-----vv~~~~~i~~gtvI 524 (524)
+.||+++.|. ++.|+++|.||+++++.+.. ...+..+..+|..+.. .||+++.|++|++|
T Consensus 109 T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~V 177 (262)
T d2jf2a1 109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGV 177 (262)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEE
T ss_pred eEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhceeeccceE
Confidence 6788888885 58889999999999998886 4466666677766532 67777777777654
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.15 E-value=4.5e-10 Score=104.77 Aligned_cols=216 Identities=16% Similarity=0.136 Sum_probs=132.6
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
...|||+|.|.++|+ | .|+|++|+|+ |||+|+++.+.+++ +++|+|.+. .+.+.+.+ +.| +.
T Consensus 4 ~~iaiIpar~~S~R~-p-----~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~td--~~~i~~i~-~~~-------~~ 66 (225)
T d1eyra_ 4 QNIAVILARQNSKGL-P-----LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTD--GGLIAEEA-KNF-------GV 66 (225)
T ss_dssp EEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHH-HHT-------TC
T ss_pred CEEEEEccCCCCcCC-C-----CccccccCCe-EHHHHHHHHHHHcCCCceEEEeec--cchhhhhh-hhh-------cc
Confidence 345899999999998 3 4999999999 99999999999997 688888774 44454443 333 21
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
.+ +........ ...++.+.++.+...+. ...+.++++.||.-+. .++.++++.+.+.+.+..+++.+
T Consensus 67 -~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~ 135 (225)
T d1eyra_ 67 -EV-VLRPAELAS-----DTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACP 135 (225)
T ss_dssp -EE-EECCHHHHS-----TTCCHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEE
T ss_pred -ee-eeecccccc-----ccccchhhccccccccc----cccceEEEeeccccccccccccccceeeccccccccceeec
Confidence 12 111111110 11245566666665554 3568899999998553 35899999888888776666655
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCCCC
Q 009817 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (524)
Q Consensus 251 ~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~~~ 330 (524)
.... ..+. +...+++....+......... ..-....+..+.++|+++.+.|.+. ..
T Consensus 136 ~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~y~~~g~iy~~~~~~l~~~--~~----- 191 (225)
T d1eyra_ 136 MEHH--PLKT-LLQINNGEYAPMRHLSDLEQP--------------RQQLPQAFRPNGAIYINDTASLIAN--NC----- 191 (225)
T ss_dssp CSSC--TTSC-EEECSSSCEEESSCGGGGTSC--------------GGGSCCEEEEEEEEEEEEHHHHHHH--TS-----
T ss_pred cccc--cccc-ccccccccccccccccccccc--------------cccCcceeeecceeEEeeHHHHHHc--CC-----
Confidence 5431 1233 333355655544332221110 0001123567889999999977542 00
Q ss_pred chhhhhHHhhhhcCceEEEEecC-eEeecCCHHHHHHHHHHh
Q 009817 331 DFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (524)
Q Consensus 331 d~~~dii~~li~~~~V~~y~~~~-~w~dIgt~~d~~~An~~l 371 (524)
.-..++..|..+. .-+||+|++||..|...+
T Consensus 192 ----------~~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 192 ----------FFIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp ----------SCCSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred ----------ccCCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 0112455555543 357999999999997644
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.12 E-value=2.5e-10 Score=107.18 Aligned_cols=127 Identities=17% Similarity=0.302 Sum_probs=77.4
Q ss_pred CccCCCeEEcC-eee-eceEECCCCEEC-ceEE-----eceEEcCCcEECCCCEEeceEEeCCccccchh--------hH
Q 009817 391 PRFLPPTKIDN-CRI-KDAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYYQTES--------EI 454 (524)
Q Consensus 391 ~~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i-----~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~--------~~ 454 (524)
++|.|.++|+. +.| .++.||++|+|+ +|.| ....||++|.|+++|.|+.............. .-
T Consensus 23 p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T d1qrea_ 23 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEY 102 (210)
T ss_dssp CEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEE
T ss_pred CccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccccccc
Confidence 34444444432 222 356666666666 4444 24688888888888888643332221111000 01
Q ss_pred HhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcE----EEcCCCEeCCCccc
Q 009817 455 ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGIT----IIMEKATIEDGMVI 524 (524)
Q Consensus 455 ~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~----vv~~~~~i~~gtvI 524 (524)
.+.++++ +.||+++.|+ +|.||+++.||.+++|.++ ++.++..|..+.+ +|.++..|++|+++
T Consensus 103 ~~~IG~~---v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~----~IG~~~vIg~~svv~g~~i~~g~~I~~g~~v 170 (210)
T d1qrea_ 103 AVYIGNN---VSLAHQSQVHGPAAVGDDTFIGMQAFVFKS----KVGNNCVLEPRSAAIGVTIPDGRYIPAGMVV 170 (210)
T ss_dssp SEEECTT---CEECTTCEEEEEEEECTTCEECTTCEEEEE----EECTTCEECTTCEEESCEECTTBEECTTCEE
T ss_pred ceeeccc---cccccccccccCCcccCCcEeeCCcccccc----ccccCcEEecCcEecCcEeCCCcEECCCcEE
Confidence 3456666 7888888885 7999999999999999875 4556666654432 45666777777653
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.04 E-value=3.2e-09 Score=107.76 Aligned_cols=210 Identities=12% Similarity=0.162 Sum_probs=139.8
Q ss_pred CCceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHh----cCC-CeEEEEeccC-chhHHHHHHHhhhc
Q 009817 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGI-NKIFVLTQFN-SASLNRHIARTYFG 165 (524)
Q Consensus 92 ~~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~----sGi-~~I~Ivt~~~-~~~l~~hl~~~y~~ 165 (524)
.+++.+|+||||.||||+ ...||.++||++..+++|..++++.. .|. -.++|.|++. ++...+++. .|.
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~-~~~- 146 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVE-KYT- 146 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHG-GGT-
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHH-Hhc-
Confidence 477999999999999995 46899999997333999999999874 232 2577888765 566777774 441
Q ss_pred CCcccCCCeEEEEc---------------cccCCCCCCCCc-ccCcHHHHHHHHH--HHHhhhcCCCCeEEEEcCceecc
Q 009817 166 NGTNFGDGFVEVLA---------------ATQTPGESGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYR 227 (524)
Q Consensus 166 ~~~~~~~~~V~vl~---------------~~q~~~e~~~~~-~~Gta~al~~a~~--~i~~~~~~~~e~~Lvl~gD~l~~ 227 (524)
.|+. .+.++. .... ......| +-|+++....... .+++....+.+++.+.+.|.+..
T Consensus 147 ---~fg~-~i~~f~Q~~~P~~~~~~~~~~~~~~-~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a 221 (378)
T d2icya2 147 ---NSNV-DIHTFNQSKYPRVVADEFVPWPSKG-KTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGA 221 (378)
T ss_dssp ---TSSS-CEEEEECCCEECEETTTTEEGGGGT-CCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTC
T ss_pred ---cCCC-ceEEEEecccccccCCccccccccc-CCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCccc
Confidence 2221 122211 0000 0001123 4588887776543 35555557889999999999887
Q ss_pred cCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCccee
Q 009817 228 MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS 307 (524)
Q Consensus 228 ~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~ 307 (524)
+.--.++-.|.++++++++-+.+...+....-.++..|..-+|+++.|.|.....+. .-++ .-.+.+
T Consensus 222 ~~Dp~~lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~~-~~~~------------~~~~~N 288 (378)
T d2icya2 222 IVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEF-KSIE------------KFKIFN 288 (378)
T ss_dssp CCCHHHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHH-HSSS------------SCCEEE
T ss_pred ccchHHHHHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhhh-cCCc------------Ccceee
Confidence 655788899999999999888877654333445667766666777777765432110 0000 123579
Q ss_pred eeEEEEeHHHHHHHHHh
Q 009817 308 MGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 308 ~GIYvf~~~vL~~ll~~ 324 (524)
++.+.|+-+.|.++++.
T Consensus 289 ~nn~~~~l~~l~~~~~~ 305 (378)
T d2icya2 289 TNNLWVNLKAIKKLVEA 305 (378)
T ss_dssp EEEEEEEHHHHHHHHHT
T ss_pred eeeeeeeHHHHHHHHhh
Confidence 99999999999988764
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.04 E-value=6.1e-10 Score=107.73 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=36.9
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC---CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD---EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~---e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
+.||+++.|. ++.|+.++.||.++.+.+.. ......+..+|+.+. +.||++++|++|++|
T Consensus 104 t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV 172 (259)
T d1j2za_ 104 TLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSAL 172 (259)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ccccCceEEeccccccceecccceeeeeccccccccccccccceecceeeeecccEeccceeeeeeeee
Confidence 5677777774 46666666666666666654 334455555555442 366777777776654
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=4.9e-10 Score=88.42 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=48.4
Q ss_pred ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCE
Q 009817 406 DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 483 (524)
Q Consensus 406 ~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~ 483 (524)
++.||++|.|+ ++.++ ++.||++|+||++|.|+++.++.+ +.|+++++|++|+|++||.
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~-------------------~~I~~~s~i~~~~Ig~~~~ 74 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAACT 74 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEEESEEECTTCE
T ss_pred cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC-------------------CEEcCCcEEECCEECCCCE
Confidence 35555555555 34444 578899999999999988888887 8899999998899998888
Q ss_pred ECC
Q 009817 484 IGK 486 (524)
Q Consensus 484 Ig~ 486 (524)
||+
T Consensus 75 IGP 77 (78)
T d1fxja1 75 IGP 77 (78)
T ss_dssp ESC
T ss_pred ECc
Confidence 886
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=2.4e-09 Score=100.14 Aligned_cols=216 Identities=14% Similarity=0.178 Sum_probs=126.1
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhcC-CCeEEEEeccCchhHHHHHHHhhhcCCcccC
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~sG-i~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~ 171 (524)
..+.|||+|.|.++|| | -|+|.+|+|+ |||+|+++++.+++ +++|+|.|. .+.+.+... .| +
T Consensus 2 ~ki~aiIpaR~~S~Rl-p-----~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivstd--~~~i~~~~~-~~-------~ 64 (228)
T d1qwja_ 2 PHLAALVLARGGSKGI-P-----LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAK-QF-------G 64 (228)
T ss_dssp CCEEEEEECCSCCSSS-S-----CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHH-HT-------T
T ss_pred CCEEEEeccCCCCCCC-C-----CcchhhhCCe-eHHHHHHHHHHhcCCcceEEEecc--hhhhhhhhh-hc-------C
Confidence 4678999999999998 4 4999999999 99999999999985 688888774 344544442 22 2
Q ss_pred CCeEEE-EccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--cCHHHHHHHHHHcCCcEEEEE
Q 009817 172 DGFVEV-LAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISC 248 (524)
Q Consensus 172 ~~~V~v-l~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~l~~--~dl~~ll~~h~~~~ad~tl~~ 248 (524)
+.+ .......++ .....+.+..+.... ...+.++++.+|.-+. .++.++++.+.+.+.+..+.+
T Consensus 65 ---~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~-----~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~ 131 (228)
T d1qwja_ 65 ---AQVHRRSSETSKD-----SSTSLDAIVEFLNYH-----NEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV 131 (228)
T ss_dssp ---CEEEECCGGGSST-----TCCHHHHHHHHHTTC-----TTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred ---ccccccccccccc-----cchhhhhhhhccccc-----cccceeeeecccccccCchhhhhhhhhhhccCccccccc
Confidence 122 111111110 024455555444322 2357788888987443 468999999998888877766
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCcccccccccccccccCCccccccCCcceeeeEEEEeHHHHHHHHHhhCCC
Q 009817 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (524)
Q Consensus 249 ~~~~~~~a~~~g~v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~~~~~l~~~GIYvf~~~vL~~ll~~~~~~ 328 (524)
...... .+..+.....+........+... ...+. ....+..+.++|+++.+++.. .
T Consensus 132 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------------~~~qd-~~~~y~~ng~~~~~k~~~~~~---~---- 187 (228)
T d1qwja_ 132 VRRHQF---RWSEIQKGVREVTEPLNLNPAKR-------------PRRQD-WDGELYENGSFYFAKRHLIEM---G---- 187 (228)
T ss_dssp EEECCC---EECCCCSSTTCCCCBSSSBTTBC-------------CCTTT-SCCEEEEEEEEEEEEHHHHHT---T----
T ss_pred cccccc---cchhhhhhccccccchhhhhhhc-------------ccccc-ccceeeeeeEEEEEeHHHHhh---C----
Confidence 554321 11111111111100000000000 00000 012356677888888776541 0
Q ss_pred CCchhhhhHHhhhhcCceEEEEecCe-EeecCCHHHHHHHHHHhhc
Q 009817 329 SNDFGSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMALTK 373 (524)
Q Consensus 329 ~~d~~~dii~~li~~~~V~~y~~~~~-w~dIgt~~d~~~An~~l~~ 373 (524)
. +...+...|..+.+ -+||+|++||..|...+..
T Consensus 188 --~---------~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k 222 (228)
T d1qwja_ 188 --Y---------LQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (228)
T ss_dssp --C---------SSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred --C---------cCCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence 0 11235666766543 5799999999999887765
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.96 E-value=2.2e-09 Score=97.14 Aligned_cols=110 Identities=18% Similarity=0.390 Sum_probs=64.5
Q ss_pred ccCCCeEEcC-eee-eceEECCCCEEC-ceEE----eceEEcCCcEECCCCEEece----EEeCCccccchhhHHhhhcC
Q 009817 392 RFLPPTKIDN-CRI-KDAIISHGCFLR-ECTV----EHSIVGERSRLDYGVELKDT----VMLGADYYQTESEIASLLAE 460 (524)
Q Consensus 392 ~i~p~~~i~~-~~i-~~siIg~g~~I~-~~~i----~~siIg~~~~Ig~~~~I~~s----~i~~~~~~~~~~~~~~~~~~ 460 (524)
+|++.++|+. +.| .++.||++|.|+ +|.| ....||.++.+++++.+..+ +..+.
T Consensus 14 ~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~--------------- 78 (172)
T d1xhda_ 14 KIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILED--------------- 78 (172)
T ss_dssp EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECT---------------
T ss_pred EECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeee---------------
Confidence 4444444432 333 256777777776 4544 23688888888888887654 22222
Q ss_pred CccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCcc
Q 009817 461 GKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMV 523 (524)
Q Consensus 461 g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtv 523 (524)
. +.++.++.+.++.|++++.||.+++|.+.. .+.++.+|..| .+|.++..|+++++
T Consensus 79 ~---~~~~~~~~~~~~~i~~~~~ig~~~~i~~gv---~IG~~~~Igag-svV~~~~~i~~~~v 134 (172)
T d1xhda_ 79 D---VTVGHQVILHSCHIKKDALIGMGSIILDGA---EIGEGAFIGAG-SLVSQGKKIPPNTL 134 (172)
T ss_dssp T---CEECTTCEEESCEECTTCEECTTCEECTTC---EECTTCEECTT-CEECTTCEECTTEE
T ss_pred e---eeeeeeecccccccccceEEecccEeeCCc---EEcCcccccce-EEEeeCeEECCCeE
Confidence 2 667777777778888888888888877762 23333333333 23444444555543
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.88 E-value=3.2e-09 Score=102.79 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=26.3
Q ss_pred cCCCCCCCCCCccCCCeEEcCeeeeceEECCCCEECceEEeceEEcCCcEECCCCEEe
Q 009817 381 YDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK 438 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~ 438 (524)
+++++.|++++.|.|+++|++ ++.||++|+|++ ++.||++|.|+++|.|.
T Consensus 2 i~~~~~I~p~a~I~~~~~Ig~----~v~Ig~~~~I~~----~v~Ig~~~~I~~~~~I~ 51 (262)
T d2jf2a1 2 IDKSAFVHPTAIVEEGASIGA----NAHIGPFCIVGP----HVEIGEGTVLKSHVVVN 51 (262)
T ss_dssp BCTTCEECTTCEECTTCEECT----TCEECTTCEECT----TEEECTTCEECSSCEEC
T ss_pred cCCCCEECCCCEECCCCEECC----CCEECCCCEECC----CCEECCCCEEeCCEEEc
Confidence 345555666666666666653 566666666652 23444444444444443
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=4.4e-09 Score=82.78 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=57.3
Q ss_pred ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCCCCCCCCC
Q 009817 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDEADRPEL 501 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~ 501 (524)
++.||.+|.|++++.|++.+..++. +.||.||+|++|.|++|++|+.++.|.++
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~------------------v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~-------- 67 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHR------------------VKIGTGCVIKNSVIGDDCEISPYTVVEDA-------- 67 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTT------------------CEECTTCEEESCEECTTCEECTTCEEESE--------
T ss_pred cEEECCCCEECCccEEeCCcEECCC------------------CEECCCeEEecCEECCCCEEcCCcEEECC--------
Confidence 4789999999999999876655554 99999999999999999999999999864
Q ss_pred ceEEecCcEEEcCCCEeCCC
Q 009817 502 GFYIRSGITIIMEKATIEDG 521 (524)
Q Consensus 502 ~~~i~~g~~vv~~~~~i~~g 521 (524)
+|++++.|+|.
T Consensus 68 ---------~Ig~~~~IGPf 78 (78)
T d1fxja1 68 ---------NLAAACTIGPF 78 (78)
T ss_dssp ---------EECTTCEESCC
T ss_pred ---------EECCCCEECcC
Confidence 89999999873
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.86 E-value=8.4e-09 Score=99.53 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=24.5
Q ss_pred CCCCCCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEe-ceEEcCCcEECCCCEE
Q 009817 382 DPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVEL 437 (524)
Q Consensus 382 ~~~~~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~-~siIg~~~~Ig~~~~I 437 (524)
+|++-|.+++.|+++++|++ |.|. +++|++||.|+ ++.|. ++.||+++.|.+++.|
T Consensus 4 h~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~I 63 (259)
T d1j2za_ 4 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 63 (259)
T ss_dssp CTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEE
Confidence 34444444444444444432 3332 35555555555 33332 3444444444444444
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=98.85 E-value=1.9e-09 Score=100.69 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=83.0
Q ss_pred ceeEEEEeCCCCCcccCCccCCCccceeecCcchhHHHHHHHHHhc-CCCeEEEEeccCchhHHHHHHHhhhcCCcccCC
Q 009817 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (524)
Q Consensus 94 ~m~aVILAaG~GtRL~PLT~~~PKpLlpIgGk~pLId~~l~~l~~s-Gi~~I~Ivt~~~~~~l~~hl~~~y~~~~~~~~~ 172 (524)
++.+||||||.|+||. ...||+|++|+|+ |||+|+++++.+. .+++|+|++.. .+ ++ +.+ ..
T Consensus 1 ~is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~~-~~----~~-~~~-~~------ 63 (205)
T d1w55a1 1 EMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSSN-IT----YM-KKF-TK------ 63 (205)
T ss_dssp CEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEESC-HH----HH-HTT-CS------
T ss_pred CeEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhcccccccccccc-cc----cc-ccc-cc------
Confidence 4679999999999997 3589999999999 9999999999987 46788776543 21 22 222 11
Q ss_pred CeEEEEccccCCCCCCCCcccCcHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccc-CHHHHHHHHHHcCCcEEEEEEE
Q 009817 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITISCAA 250 (524)
Q Consensus 173 ~~V~vl~~~q~~~e~~~~~~~Gta~al~~a~~~i~~~~~~~~e~~Lvl~gD~-l~~~-dl~~ll~~h~~~~ad~tl~~~~ 250 (524)
.+.++... ..-.++++.++..++ .+.+++..||. +... .+.++++.+.+ .++.+.+.+
T Consensus 64 -~~~~v~Gg-----------~~r~~Sv~~gl~~~~------~~~VlIhd~~rP~i~~~~i~~li~~~~~--~~~~i~~~~ 123 (205)
T d1w55a1 64 -NYEFIEGG-----------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDK--ADCITPALK 123 (205)
T ss_dssp -SSEEEECC-----------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGG--CSEEEEEEC
T ss_pred -cccccccc-----------cchhhhhhhhhhhhh------hcceeeeccCcccCcHHHHHHHHhhhhc--ccccccccc
Confidence 12333211 133578888776653 47788889987 4443 46888876654 345666665
Q ss_pred cCC
Q 009817 251 VGE 253 (524)
Q Consensus 251 ~~~ 253 (524)
+.+
T Consensus 124 ~~d 126 (205)
T d1w55a1 124 VAD 126 (205)
T ss_dssp CCS
T ss_pred ccc
Confidence 543
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.82 E-value=2e-08 Score=92.65 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=17.6
Q ss_pred EeecCCHHHHHHHHHHhhccC-CCccccCCCCCCCCCCcc
Q 009817 355 WEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRF 393 (524)
Q Consensus 355 w~dIgt~~d~~~An~~l~~~~-~~~~~~~~~~~i~~~~~i 393 (524)
..-||++..-.+.-..+.+.. ....+++|.+.+...+.+
T Consensus 50 ~iaIG~~~~R~~~~~~~~~~~~~~~~~I~p~a~I~~~~~I 89 (193)
T d3bswa1 50 FIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIV 89 (193)
T ss_dssp EECCSCHHHHHHHHHHHHHTTCCBCCEECTTCEECTTSEE
T ss_pred EEEECCcHHHHHHHHHhhhhccccceecCCCcEEeeeeEE
Confidence 345777764333333343332 223344555444444333
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=7.6e-09 Score=96.11 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=66.8
Q ss_pred CCCCCCccCCCeEEc-CeeeeceEECCCCEEC-ceEE---eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcC
Q 009817 386 PFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAE 460 (524)
Q Consensus 386 ~i~~~~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i---~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~ 460 (524)
.+...+.|.||+++. + .++.||++|+|+ +|.| ..+.||++|.|+++|.|............. .....+
T Consensus 56 ~iG~~~~I~p~~~i~~G---~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~---~~~~~~- 128 (200)
T d1krra_ 56 TVGENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRK---NGEMYS- 128 (200)
T ss_dssp BCCSSCEECSCEEESCS---TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCT---TCCBEE-
T ss_pred cCCCCCEEcCCEEEecC---CccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccc---cceeec-
Confidence 356677888888874 2 145677777777 5655 346899999999999997654332211100 011111
Q ss_pred CccceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 461 GKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 461 g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
-|+.||++++|. +|+|.++++||++++|..++
T Consensus 129 --~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagS 161 (200)
T d1krra_ 129 --FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGS 161 (200)
T ss_dssp --CCEEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred --ceEEEccCcccceeeecccccccCCCcEEeCCC
Confidence 258889999985 78888888888888888774
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.79 E-value=5e-09 Score=94.70 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=58.2
Q ss_pred CCCCCCccCCCeEEcCeeeeceEECCCCEEC-ceEE----eceEEcCCcEECCCCEEeceE----EeCCccccchhhHHh
Q 009817 386 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV----EHSIVGERSRLDYGVELKDTV----MLGADYYQTESEIAS 456 (524)
Q Consensus 386 ~i~~~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i----~~siIg~~~~Ig~~~~I~~s~----i~~~~~~~~~~~~~~ 456 (524)
.|.+++.+.|.+.|. .++.||++|.|+ ++.| ..+.|+.++.++..+.+..+. ..+...... ..
T Consensus 12 ~I~~~~~I~~~a~I~----g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~ 83 (173)
T d1v3wa_ 12 RIHPSAFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIG----HN 83 (173)
T ss_dssp EECTTCEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEEC----TT
T ss_pred EECcCcEECCCCEEe----CceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeee----ee
Confidence 344444555554443 256666666666 3444 345778888888777775321 111110000 00
Q ss_pred hhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 457 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 457 ~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
.. ..++.||++++|. +|+|+++++||++++|... .+|.+|..|++++++
T Consensus 84 ~~---~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgag----------------svV~~~~~i~~~~iv 133 (173)
T d1v3wa_ 84 AM---VHGAKVGNYVIIGISSVILDGAKIGDHVIIGAG----------------AVVPPNKEIPDYSLV 133 (173)
T ss_dssp CE---EESCEECSSEEECTTCEECTTCEECSSEEECTT----------------CEECTTCEECTTEEE
T ss_pred ee---eeeeecCCcccccceeeecCCEEEcceeEEcCC----------------cEEeCCeEeCCCCEE
Confidence 00 1125555555553 4555555555555555554 367777777777654
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.78 E-value=1.8e-08 Score=94.14 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=45.8
Q ss_pred ceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 422 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 422 ~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
.+.||++|.||.++.|.+.+..+++ +.||.++.|.+|.||++|.||.++.+.+.
T Consensus 103 ~~~IG~~v~IG~~~~i~g~~~IGd~------------------~~IG~gs~i~~~~IG~~~vIg~~svv~g~ 156 (210)
T d1qrea_ 103 AVYIGNNVSLAHQSQVHGPAAVGDD------------------TFIGMQAFVFKSKVGNNCVLEPRSAAIGV 156 (210)
T ss_dssp SEEECTTCEECTTCEEEEEEEECTT------------------CEECTTCEEEEEEECTTCEECTTCEEESC
T ss_pred ceeeccccccccccccccCCcccCC------------------cEeeCCccccccccccCcEEecCcEecCc
Confidence 4789999999999999765544443 89999999999999999999999998865
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.77 E-value=9.9e-09 Score=93.73 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=23.4
Q ss_pred ccCCCC-CCCCCCccCCCeEEcC-eeee-ceEECCCCEEC-ceEEeceEEcCCcEE
Q 009817 380 FYDPKT-PFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHSIVGERSRL 431 (524)
Q Consensus 380 ~~~~~~-~i~~~~~i~p~~~i~~-~~i~-~siIg~g~~I~-~~~i~~siIg~~~~I 431 (524)
++||++ .|.+++.++++++|++ +.|. ++.||++|.|+ ++.++++.||+++.|
T Consensus 3 ~i~P~s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I 58 (196)
T d1g97a1 3 FVNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVI 58 (196)
T ss_dssp ESCGGGCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEE
T ss_pred EeCCCeEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccc
Confidence 444433 2444445554444432 3332 35555555555 344444444444443
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.76 E-value=7e-09 Score=90.08 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=73.4
Q ss_pred CCccCCCeEEcCeeeeceEECCCCEEC-ceEEeceEEcCC-------------------cEECCCCEEeceEEeCCcccc
Q 009817 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGER-------------------SRLDYGVELKDTVMLGADYYQ 449 (524)
Q Consensus 390 ~~~i~p~~~i~~~~i~~siIg~g~~I~-~~~i~~siIg~~-------------------~~Ig~~~~I~~s~i~~~~~~~ 449 (524)
.+.+++++.|.++.+.+|+||++|.|+ ++.|+++++..+ ++||++|.|+++++..+
T Consensus 14 ~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~---- 89 (135)
T d1yp2a1 14 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKN---- 89 (135)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTT----
T ss_pred eCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCC----
Confidence 456888999987888899999999999 788888776544 78999999998888777
Q ss_pred chhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEe
Q 009817 450 TESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATI 518 (524)
Q Consensus 450 ~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i 518 (524)
+.||+|+.|. .+.+.+.+++++++.|.++. ..|..| ++|+.+++|
T Consensus 90 ---------------~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~--------vvIg~~-~~I~~g~vI 135 (135)
T d1yp2a1 90 ---------------ARIGDNVKIINKDNVQEAARETDGYFIKSGI--------VTVIKD-ALIPSGIII 135 (135)
T ss_dssp ---------------CEECTTCEECCSSCCSCEEEGGGTEEEETTE--------EEECTT-CEECTTCBC
T ss_pred ---------------CEECCCcEECCCcccccceeeCCCEEECCCe--------EEECCC-CEECcCcCC
Confidence 8888888885 45555556666666665431 233333 566666554
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.75 E-value=1.3e-08 Score=93.81 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=10.6
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEe
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 491 (524)
+.||++|+|. +|.|.++++||++++|.
T Consensus 143 v~Ig~~~~IG~~s~I~~~v~Ig~~~~Ig 170 (193)
T d3bswa1 143 VKIGKNCFLGINSCVLPNLSLADDSILG 170 (193)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred ceeeccccCCceeeEcCCeEECCCCEEC
Confidence 3344444442 33333444444444333
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.71 E-value=8e-09 Score=94.36 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=73.6
Q ss_pred ccCCCCCCCCCCccCCCeEEc-C------------eeeeceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCc
Q 009817 380 FYDPKTPFYTSPRFLPPTKID-N------------CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGAD 446 (524)
Q Consensus 380 ~~~~~~~i~~~~~i~p~~~i~-~------------~~i~~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~ 446 (524)
+++++..|...++++|++.|+ + +.|.++.||++|.|....+..+.+++++.||+++.+.+.+.++..
T Consensus 10 ~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~i~~~ 89 (196)
T d1g97a1 10 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLGAQ 89 (196)
T ss_dssp EECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTT
T ss_pred EECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccccceeeccccCcceeecceecccccccccc
Confidence 345555555555555555543 2 333445556666665545555666777777777777555444432
Q ss_pred c-ccchhhH-HhhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCC
Q 009817 447 Y-YQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEK 515 (524)
Q Consensus 447 ~-~~~~~~~-~~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~ 515 (524)
. ....... ...+++. +.+++++.+.++.++.++.++.++...... ......++..|..+. +.||++
T Consensus 90 ~~i~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~ 166 (196)
T d1g97a1 90 VHIGNFVEVKGSSIGEN---TKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDN 166 (196)
T ss_dssp CEEEEEEEEESCEECTT---CEEEEEEEEESEEECSSCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSCEECTT
T ss_pred eeecccccceeeecCcc---eEecceEEecceeecceeecCCCeEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECCC
Confidence 1 1111111 2222333 455555666666666666766666655432 112223334444332 367777
Q ss_pred CEeCCCccc
Q 009817 516 ATIEDGMVI 524 (524)
Q Consensus 516 ~~i~~gtvI 524 (524)
++|++|++|
T Consensus 167 s~IgagsvV 175 (196)
T d1g97a1 167 SLVGAGSTI 175 (196)
T ss_dssp CEECTTCEE
T ss_pred CEECCCCEE
Confidence 777777764
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.68 E-value=3.6e-08 Score=93.98 Aligned_cols=100 Identities=13% Similarity=0.225 Sum_probs=56.3
Q ss_pred CCCCCccCCCeEEcCeeee-ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccce
Q 009817 387 FYTSPRFLPPTKIDNCRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI 465 (524)
Q Consensus 387 i~~~~~i~p~~~i~~~~i~-~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~ 465 (524)
+-.++.+.|++.+.++-|. .+.||+||.|.. +++||..++||.+|+|...+-+++. ++.-.....+++++ |
T Consensus 111 VR~GayI~~~vVlmps~VNigA~ig~~~midt----~a~vgs~aqIG~~vhis~g~~igGv-lep~~~~p~iIed~---~ 182 (274)
T d3tdta_ 111 VRQGAFIARNTVLMPSYVNIGAYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGV-LEPLQANPTIIEDN---C 182 (274)
T ss_dssp EBTTCEECTTCEECSEEECTTCEECTTCEECT----TEEECTTCEECTTCEECTTCEECCS-BTTBCSSCCEECTT---C
T ss_pred eccCcEECCCcEEeeeEeccccEEcCCcEEcc----cceecceeEECCCeEECCCcEEEec-cccCCCCCcEEecC---c
Confidence 3334444444444443332 467777777762 4677777777777777555544432 22222223334444 5
Q ss_pred EeCCCcEE-eeeEECCCCEECCCcEEeCCC
Q 009817 466 GVGRNTKI-RNCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 466 ~Ig~~~~I-~~~iI~~~~~Ig~~~~i~~~~ 494 (524)
.||.++.| ..++|+++|.||.|++|....
T Consensus 183 ~IGa~s~v~egv~Vg~~avi~~gv~i~~~t 212 (274)
T d3tdta_ 183 FIGARSEVVEGVIVEEGSVISMGVYLGQST 212 (274)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EeccCceEecCEEecCceEeccceEEeccc
Confidence 55555555 367777777777777777763
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=2.1e-08 Score=91.63 Aligned_cols=93 Identities=20% Similarity=0.366 Sum_probs=56.5
Q ss_pred CccCCCeEEc-CeeeeceEECCCCEEC-ceEEe---ceEEcCCcEECCCCEEeceEEeCCccccchhhH--HhhhcCCcc
Q 009817 391 PRFLPPTKID-NCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKV 463 (524)
Q Consensus 391 ~~i~p~~~i~-~~~i~~siIg~g~~I~-~~~i~---~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~--~~~~~~g~~ 463 (524)
..+.||.+++ + .|..||++|+|+ +|.|. ...||++|.|+++|.|........ .... ...++.
T Consensus 59 ~~i~~p~~~~~G---~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~-----~~~~~~~~~~~~--- 127 (182)
T d1ocxa_ 59 AYIEPTFRCDYG---YNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPID-----PVARNSGAELGK--- 127 (182)
T ss_dssp EEECSCEEESSS---TTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSS-----HHHHTTTCBEEC---
T ss_pred eEEECCEEEEec---cceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccc-----eeeeeccceEcc---
Confidence 3456666653 1 134455555555 34332 247899999999988876543322 1111 111222
Q ss_pred ceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 464 ~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
|+.||++++|. +|+|.++++||++++|..++
T Consensus 128 ~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgags 159 (182)
T d1ocxa_ 128 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGA 159 (182)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred eeEECceEeeCceeeccCcEEECCCCEECCCC
Confidence 47888888884 78888888888888887764
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=5e-08 Score=89.62 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=30.3
Q ss_pred eCCCcEEeeeEECCCCEECCCcEEeCCC----CCCCCCCceEEecCc-----EEEcCCCEeCCCccc
Q 009817 467 VGRNTKIRNCIIDKNVKIGKDVVIVNKD----EADRPELGFYIRSGI-----TIIMEKATIEDGMVI 524 (524)
Q Consensus 467 Ig~~~~I~~~iI~~~~~Ig~~~~i~~~~----e~~~~~~~~~i~~g~-----~vv~~~~~i~~gtvI 524 (524)
|++++.+.++.++.++.|+.++...+.. ......++..|..+. +.||++++|++|++|
T Consensus 110 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV 176 (201)
T d2oi6a1 110 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV 176 (201)
T ss_dssp EEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred EceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEE
Confidence 3333333355566666666666555543 112233333333332 577777777777764
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.52 E-value=2.2e-07 Score=88.49 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=50.5
Q ss_pred CccCCCeEEcCeeeeceEECCCCEECceEE-eceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCC
Q 009817 391 PRFLPPTKIDNCRIKDAIISHGCFLRECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGR 469 (524)
Q Consensus 391 ~~i~p~~~i~~~~i~~siIg~g~~I~~~~i-~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~ 469 (524)
.|+-|++.+.. .+.|++|+++.++.| ..+.||++|.|..++.|..+...|.+ |.|+.
T Consensus 103 ~RvvPga~VR~----GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~------------------vhis~ 160 (274)
T d3tdta_ 103 FRVVPPATVRQ----GAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLSG 160 (274)
T ss_dssp CEECTTCEEBT----TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTT------------------CEECT
T ss_pred EEeCCCceecc----CcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCC------------------eEECC
Confidence 45556655543 467777776665444 24566666666666666544433332 66666
Q ss_pred CcEEe---------eeEECCCCEECCCcEEeCC
Q 009817 470 NTKIR---------NCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 470 ~~~I~---------~~iI~~~~~Ig~~~~i~~~ 493 (524)
++.|. .+||++||.||.++.|..+
T Consensus 161 g~~igGvlep~~~~p~iIed~~~IGa~s~v~eg 193 (274)
T d3tdta_ 161 GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEG 193 (274)
T ss_dssp TCEECCSBTTBCSSCCEECTTCEECTTCEECTT
T ss_pred CcEEEeccccCCCCCcEEecCcEeccCceEecC
Confidence 66665 4578888888888888866
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.48 E-value=1.7e-07 Score=84.32 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=44.2
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEec---eEEeCCc-cccchhhHHhhhcCCccceEeC------CCcEEee
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD---TVMLGAD-YYQTESEIASLLAEGKVPIGVG------RNTKIRN 475 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~---s~i~~~~-~~~~~~~~~~~~~~g~~~~~Ig------~~~~I~~ 475 (524)
++.|+++|+|.+ ++.||++|.|+++|.|.. .+..+.. .+.....+. .....++.++ ......+
T Consensus 16 ~~~I~~~a~I~g----~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
T d1v3wa_ 16 SAFVDENAVVIG----DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIH---TSHGYPTEIGEYVTIGHNAMVHG 88 (173)
T ss_dssp TCEECTTSEEEE----EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEE---CBTTBCEEECSSCEECTTCEEES
T ss_pred CcEECCCCEEeC----ceEECCCCEECCCccccccccccccccccccccccccc---cccCCCcccCcceeeeeeeeeee
Confidence 344455555542 588999999999999963 3333332 111111110 0001123333 4444446
Q ss_pred eEECCCCEECCCcEEeCC
Q 009817 476 CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (524)
+.||+++.||.+++|..+
T Consensus 89 ~~Ig~~~~ig~~~~i~~g 106 (173)
T d1v3wa_ 89 AKVGNYVIIGISSVILDG 106 (173)
T ss_dssp CEECSSEEECTTCEECTT
T ss_pred eecCCcccccceeeecCC
Confidence 777777777777777765
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.44 E-value=1.4e-07 Score=84.92 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=11.2
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEe
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 491 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~ 491 (524)
+.||.++.|. ++.||++|.||.++.|.
T Consensus 97 ~~ig~~~~i~~gv~IG~~~~IgagsvV~ 124 (172)
T d1xhda_ 97 ALIGMGSIILDGAEIGEGAFIGAGSLVS 124 (172)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEEecccEeeCCcEEcCcccccceEEEe
Confidence 3444444442 34444444444444443
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.41 E-value=6.2e-08 Score=89.90 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=21.8
Q ss_pred ceEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 464 PIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 464 ~~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
++.||++|+|. +|+|.++++||+++.|..++
T Consensus 113 ~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagS 144 (203)
T d1mr7a_ 113 DTIIGNDVWIGKDVVIMPGVKIGDGAIVAANS 144 (203)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred CeEECCEEEECCceeEEeEEEEcCCCEEecCe
Confidence 36777777774 67777777777777777664
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.26 E-value=5.1e-07 Score=83.56 Aligned_cols=20 Identities=50% Similarity=0.677 Sum_probs=15.6
Q ss_pred eeeEECCCCEECCCcEEeCC
Q 009817 474 RNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 474 ~~~iI~~~~~Ig~~~~i~~~ 493 (524)
+.++||++|.||.+++|..+
T Consensus 112 g~v~IGd~v~IG~~~~I~~g 131 (203)
T d1mr7a_ 112 GDTIIGNDVWIGKDVVIMPG 131 (203)
T ss_dssp CCEEECSSCEECTTCEECTT
T ss_pred cCeEECCEEEECCceeEEeE
Confidence 36778888888888888776
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=4e-07 Score=82.93 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=41.4
Q ss_pred EECCCCEEC-ceEEec-eEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEEe-eeEECCCCEE
Q 009817 408 IISHGCFLR-ECTVEH-SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 484 (524)
Q Consensus 408 iIg~g~~I~-~~~i~~-siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I~-~~iI~~~~~I 484 (524)
.||++|.|+ ++.|.+ +.++..+....++.+...+..+++ +.||.++.|. ++.||+||.|
T Consensus 94 ~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~------------------~~iG~~~~I~~Gv~IG~~~vI 155 (182)
T d1ocxa_ 94 RIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNN------------------VWIGGRAVINPGVTIGDNVVV 155 (182)
T ss_dssp EECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTT------------------CEECTTCEECTTCEECTTCEE
T ss_pred EECCCeEECcCceEeecccccceeeeeccceEcceeEECce------------------EeeCceeeccCcEEECCCCEE
Confidence 556666665 344432 334444444555555544444443 7788888885 5888888888
Q ss_pred CCCcEEeCC
Q 009817 485 GKDVVIVNK 493 (524)
Q Consensus 485 g~~~~i~~~ 493 (524)
|+++++...
T Consensus 156 gagsvV~kd 164 (182)
T d1ocxa_ 156 ASGAVVTKD 164 (182)
T ss_dssp CTTCEECSC
T ss_pred CCCCEEccC
Confidence 888888754
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=3.1e-06 Score=78.00 Aligned_cols=18 Identities=44% Similarity=0.457 Sum_probs=12.4
Q ss_pred eEECCCCEECCCcEEeCC
Q 009817 476 CIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 476 ~iI~~~~~Ig~~~~i~~~ 493 (524)
+.|+++|.||.+++|..+
T Consensus 131 v~Igd~v~IG~~~~I~~G 148 (200)
T d1krra_ 131 ITIGNNVWIGSHVVINPG 148 (200)
T ss_dssp EEECTTCEECTTCEECTT
T ss_pred EEEccCcccceeeecccc
Confidence 467777777777777665
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.09 E-value=5.1e-05 Score=78.78 Aligned_cols=212 Identities=18% Similarity=0.264 Sum_probs=125.5
Q ss_pred CceeEEEEeCCCCCcccCCccCCCccceee---cCcchhHHHHHHHHHhc----------CC-CeEEEEeccC-chhHHH
Q 009817 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINS----------GI-NKIFVLTQFN-SASLNR 157 (524)
Q Consensus 93 ~~m~aVILAaG~GtRL~PLT~~~PKpLlpI---gGk~pLId~~l~~l~~s----------Gi-~~I~Ivt~~~-~~~l~~ 157 (524)
.++..|+||||.||||+ ..-||.++|| .|+ .+++..++.+... +. =-++|+|.+. .+.+..
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~k-sllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCCC-cHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 56899999999999995 4679999998 467 9999988887552 21 2467777765 567777
Q ss_pred HHHH-hhhcCCcccCCCeEEEEccccCC--CCCCC----------CcccCcHHHHHHHHH--HHHhhhcCCCCeEEEEcC
Q 009817 158 HIAR-TYFGNGTNFGDGFVEVLAATQTP--GESGK----------NWFQGTADAVRQFTW--VFEDAKNRNIENVAILCG 222 (524)
Q Consensus 158 hl~~-~y~~~~~~~~~~~V~vl~~~q~~--~e~~~----------~~~~Gta~al~~a~~--~i~~~~~~~~e~~Lvl~g 222 (524)
++.+ .||+-.. ..|.++....-| ...++ ..+-|.++....... .++++...+.+++.+.+.
T Consensus 177 ~l~~~~~FGl~~----~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~v 252 (501)
T d1jv1a_ 177 FFTKHKYFGLKK----ENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252 (501)
T ss_dssp HHHHTGGGGSCG----GGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEET
T ss_pred HHHhccccCCCc----CceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEec
Confidence 7764 3454321 122222110000 00010 012477665554432 455555578899999999
Q ss_pred ceec-ccCHHHHHHHHHHcCCcEEEEEEEcCCCCCCcceE-EEECCCCcEEEEEecCCcccccccccccccccCCccccc
Q 009817 223 DHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGL-VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300 (524)
Q Consensus 223 D~l~-~~dl~~ll~~h~~~~ad~tl~~~~~~~~~a~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~v~t~~~~l~~~~~~ 300 (524)
|.+. ..---.++-.+..+++++.+-+.+...+. ..-|. +..|..-+|+++.|-|.... +... +.+-+
T Consensus 253 DN~l~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-e~~G~l~~~dg~~~vvEysel~~~~~-~~~~-~~g~l-------- 321 (501)
T d1jv1a_ 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNPT-EPVGVVCRVDGVYQVVEYSEISLATA-QKRS-SDGRL-------- 321 (501)
T ss_dssp TBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEEETTEEEEECGGGSCHHHH-HCBC-TTSSB--------
T ss_pred CCccccccCHHHHHHHHhcccceeEEEEEcCCCC-cccceEEEECCeEEEEEeccCCHHHH-hhcc-CCCcc--------
Confidence 9865 33335678888999999988877765422 23444 34443333444433332111 1000 00000
Q ss_pred cCCcceeeeEEEEeHHHHHHHHHh
Q 009817 301 KCPYVASMGVYVFKKDVLFKLLRW 324 (524)
Q Consensus 301 ~~~~l~~~GIYvf~~~vL~~ll~~ 324 (524)
.-...+++.++|+-++|.++++.
T Consensus 322 -~f~~~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 322 -LFNAGNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp -SSCEEEEEEEEEEHHHHHHHHHT
T ss_pred -cccccceeheeeEHHHHHHHHHh
Confidence 12357899999999999988764
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=8.1e-06 Score=74.30 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=22.6
Q ss_pred ceEECCCCEECceEEeceEEcCCcEECCCCEEeceEEeCC
Q 009817 406 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 445 (524)
Q Consensus 406 ~siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~ 445 (524)
++.|+++|+|++ +++||++|+|+++|.|.++.+.+.
T Consensus 20 ~v~Ig~~vvI~~----~v~IG~~~~I~~~~~I~~~~~~~~ 55 (201)
T d2oi6a1 20 DVEIDTNVIIEG----NVTLGHRVKIGTGCVIKNSVIGDD 55 (201)
T ss_dssp SCEECTTEEEEE----EEEECTTCEECTTCEEESCEECTT
T ss_pred CCEECCCCEECC----ceEECCCcEECCCEEEeeeccCCc
Confidence 344444444442 477777777777777777666665
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.07 E-value=4.1e-06 Score=79.37 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=14.4
Q ss_pred eEECCCCEECceEEeceEEcCCcEECCCCEEe
Q 009817 407 AIISHGCFLRECTVEHSIVGERSRLDYGVELK 438 (524)
Q Consensus 407 siIg~g~~I~~~~i~~siIg~~~~Ig~~~~I~ 438 (524)
+.||+|++|... ...+||+++.||.+|.|.
T Consensus 144 ~~Ig~g~~i~h~--~givig~~~~ig~~~~i~ 173 (241)
T d1ssqa_ 144 AKIGHGIMFDHA--TGIVVGETSVIENDVSIL 173 (241)
T ss_dssp CEECSSCEESSC--TTCEECTTCEECTTCEEC
T ss_pred CEEccCcccCcc--ceEEEeccceecCCeeec
Confidence 444555555421 124555555555555553
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.95 E-value=3.4e-06 Score=78.22 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=18.6
Q ss_pred eEeCCCcEEe-eeEECCCCEECCCcEEeCCC
Q 009817 465 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 494 (524)
Q Consensus 465 ~~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~~ 494 (524)
+.||++|+|. +|.|.++++||++|+|..++
T Consensus 109 v~Igd~v~IG~~s~I~~gv~IG~~~vIgagS 139 (208)
T d1xata_ 109 TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRA 139 (208)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred EEEcCCeEECccccccCCeEeCCCCEEeCce
Confidence 6666666663 56666666666666666553
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.90 E-value=1.5e-05 Score=78.33 Aligned_cols=113 Identities=12% Similarity=0.252 Sum_probs=58.7
Q ss_pred cCCCCCCCCCCccCCCeEEcC-eee-eceEECCCCEECceEEe-ceEEcCCcEECCCCEEeceEEeCCccccchhhHH--
Q 009817 381 YDPKTPFYTSPRFLPPTKIDN-CRI-KDAIISHGCFLRECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIA-- 455 (524)
Q Consensus 381 ~~~~~~i~~~~~i~p~~~i~~-~~i-~~siIg~g~~I~~~~i~-~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~-- 455 (524)
||+.+.++..+++...++|.+ +.| .++.|+++|.|+++.|. ++.|+.+++|+.++.+.++.+.++..+.....+-
T Consensus 60 ~~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i~g~ 139 (320)
T d2f9ca1 60 YDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAI 139 (320)
T ss_dssp CSTTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEECCC
T ss_pred ECCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEEECC
Confidence 344555556666666666643 444 25677777777654442 4556666666555555555554443322222110
Q ss_pred -hhhcCCccceEeCCCcEEeeeEECCCCEECCCcEEeCC
Q 009817 456 -SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 493 (524)
Q Consensus 456 -~~~~~g~~~~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~ 493 (524)
.......-...++.++.+.++.|..++.|+.++.+.+.
T Consensus 140 ~~~~~~~~~~~~i~~~~~~~~~~I~~~~~Iggna~i~~~ 178 (320)
T d2f9ca1 140 QGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHA 178 (320)
T ss_dssp CCCSSSTTCCCEECSSCEEESCEECSSCEECSSCEEESC
T ss_pred CceeecccCcceecccceeeeeEEeeeeeeCCCccccce
Confidence 00000001135566666667777777777777766543
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.78 E-value=2.8e-05 Score=73.41 Aligned_cols=67 Identities=30% Similarity=0.407 Sum_probs=33.0
Q ss_pred CCEECceEEeceEEcCCcEECCCCEEeceEEeCCccccchhhHHhhhcCCccceEeCCCcEE-eeeEECCCCEECCCcEE
Q 009817 412 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVI 490 (524)
Q Consensus 412 g~~I~~~~i~~siIg~~~~Ig~~~~I~~s~i~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~I-~~~iI~~~~~Ig~~~~i 490 (524)
|++|++ ++.||.+|.|..++.+........+ ....++++ +.||.|++| .+..||+||.||.|+++
T Consensus 157 givig~----~~~ig~~~~i~~~v~~~~~~~~~~~-------~~~~Ig~~---v~IGaga~Ilg~v~IG~~a~IgAgsvV 222 (241)
T d1ssqa_ 157 GIVVGE----TSVIENDVSILQGVTLGGTGKESGD-------RHPKVREG---VMIGAGAKILGNIEVGKYAKIGANSVV 222 (241)
T ss_dssp TCEECT----TCEECTTCEECTTCEEECCSSSCSS-------CSCEECTT---CEECTTCEEESSCEECTTCEECTTCEE
T ss_pred eEEEec----cceecCCeeecccccccccccCCCC-------CCCccCCC---eEECCCCEEcCCcEECCCCEECCCCEE
Confidence 455553 2566666677777766543211110 01123333 555555544 35555555555555555
Q ss_pred eC
Q 009817 491 VN 492 (524)
Q Consensus 491 ~~ 492 (524)
..
T Consensus 223 ~k 224 (241)
T d1ssqa_ 223 LN 224 (241)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.47 E-value=5.3e-05 Score=69.84 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=24.9
Q ss_pred EeeeEECCCCEECCCcEEeCCCCCCCCCCceEEecCcEEEcCCCEeCCCccc
Q 009817 473 IRNCIIDKNVKIGKDVVIVNKDEADRPELGFYIRSGITIIMEKATIEDGMVI 524 (524)
Q Consensus 473 I~~~iI~~~~~Ig~~~~i~~~~e~~~~~~~~~i~~g~~vv~~~~~i~~gtvI 524 (524)
.+.++||+||.||.++.|..+ +.||+|++|++|++|
T Consensus 106 ~g~v~Igd~v~IG~~s~I~~g----------------v~IG~~~vIgagSvV 141 (208)
T d1xata_ 106 AGDTLIGHEVWIGTEAMFMPG----------------VRVGHGAIIGSRALV 141 (208)
T ss_dssp CCCEEECTTCEECTTCEECTT----------------CEECTTCEECTTCEE
T ss_pred cCCEEEcCCeEECccccccCC----------------eEeCCCCEEeCceEE
Confidence 346888888888888888876 355566666655553
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.42 E-value=0.00042 Score=67.66 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=13.4
Q ss_pred eEeCCCcEEeeeEECCCCEECCCcEEeC
Q 009817 465 IGVGRNTKIRNCIIDKNVKIGKDVVIVN 492 (524)
Q Consensus 465 ~~Ig~~~~I~~~iI~~~~~Ig~~~~i~~ 492 (524)
+.|+.++.+.++.+..+++|..++.|..
T Consensus 111 ~~i~~~~~i~~~~i~g~~~v~~~a~i~g 138 (320)
T d2f9ca1 111 VTIQSSSVREECAIYGDARVLNQSEILA 138 (320)
T ss_dssp CEEESCEECSSEEECSSCEEESSCEECC
T ss_pred eeecCccEEeeeEEECCeEEeCCcEEEC
Confidence 3444444444445555555555555543
|